@cyanheads/gbif-biodiversity-mcp-server 0.2.2 → 0.2.4

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Files changed (52) hide show
  1. package/CLAUDE.md +2 -2
  2. package/README.md +1 -2
  3. package/dist/config/server-config.d.ts +0 -1
  4. package/dist/config/server-config.d.ts.map +1 -1
  5. package/dist/config/server-config.js +0 -5
  6. package/dist/config/server-config.js.map +1 -1
  7. package/dist/index.js +0 -1
  8. package/dist/index.js.map +1 -1
  9. package/dist/mcp-server/resources/definitions/gbif-species.resource.d.ts.map +1 -1
  10. package/dist/mcp-server/resources/definitions/gbif-species.resource.js.map +1 -1
  11. package/dist/mcp-server/tools/definitions/gbif-count-occurrences.tool.d.ts +1 -1
  12. package/dist/mcp-server/tools/definitions/gbif-count-occurrences.tool.d.ts.map +1 -1
  13. package/dist/mcp-server/tools/definitions/gbif-get-dataset.tool.d.ts +1 -1
  14. package/dist/mcp-server/tools/definitions/gbif-get-dataset.tool.d.ts.map +1 -1
  15. package/dist/mcp-server/tools/definitions/gbif-get-occurrence.tool.d.ts +1 -1
  16. package/dist/mcp-server/tools/definitions/gbif-get-occurrence.tool.d.ts.map +1 -1
  17. package/dist/mcp-server/tools/definitions/gbif-get-species-children.tool.d.ts +6 -4
  18. package/dist/mcp-server/tools/definitions/gbif-get-species-children.tool.d.ts.map +1 -1
  19. package/dist/mcp-server/tools/definitions/gbif-get-species-children.tool.js +25 -13
  20. package/dist/mcp-server/tools/definitions/gbif-get-species-children.tool.js.map +1 -1
  21. package/dist/mcp-server/tools/definitions/gbif-get-species-classification.tool.d.ts +1 -1
  22. package/dist/mcp-server/tools/definitions/gbif-get-species-classification.tool.d.ts.map +1 -1
  23. package/dist/mcp-server/tools/definitions/gbif-get-species.tool.d.ts +1 -1
  24. package/dist/mcp-server/tools/definitions/gbif-get-species.tool.d.ts.map +1 -1
  25. package/dist/mcp-server/tools/definitions/gbif-match-species.tool.d.ts +1 -1
  26. package/dist/mcp-server/tools/definitions/gbif-match-species.tool.d.ts.map +1 -1
  27. package/dist/mcp-server/tools/definitions/gbif-occurrence-facets.tool.d.ts +4 -1
  28. package/dist/mcp-server/tools/definitions/gbif-occurrence-facets.tool.d.ts.map +1 -1
  29. package/dist/mcp-server/tools/definitions/gbif-occurrence-facets.tool.js +12 -0
  30. package/dist/mcp-server/tools/definitions/gbif-occurrence-facets.tool.js.map +1 -1
  31. package/dist/mcp-server/tools/definitions/gbif-search-datasets.tool.d.ts +7 -5
  32. package/dist/mcp-server/tools/definitions/gbif-search-datasets.tool.d.ts.map +1 -1
  33. package/dist/mcp-server/tools/definitions/gbif-search-datasets.tool.js +29 -14
  34. package/dist/mcp-server/tools/definitions/gbif-search-datasets.tool.js.map +1 -1
  35. package/dist/mcp-server/tools/definitions/gbif-search-occurrences.tool.d.ts +7 -5
  36. package/dist/mcp-server/tools/definitions/gbif-search-occurrences.tool.d.ts.map +1 -1
  37. package/dist/mcp-server/tools/definitions/gbif-search-occurrences.tool.js +29 -14
  38. package/dist/mcp-server/tools/definitions/gbif-search-occurrences.tool.js.map +1 -1
  39. package/dist/mcp-server/tools/definitions/gbif-search-publishers.tool.d.ts +7 -5
  40. package/dist/mcp-server/tools/definitions/gbif-search-publishers.tool.d.ts.map +1 -1
  41. package/dist/mcp-server/tools/definitions/gbif-search-publishers.tool.js +29 -14
  42. package/dist/mcp-server/tools/definitions/gbif-search-publishers.tool.js.map +1 -1
  43. package/dist/mcp-server/tools/definitions/gbif-search-species.tool.d.ts +7 -5
  44. package/dist/mcp-server/tools/definitions/gbif-search-species.tool.d.ts.map +1 -1
  45. package/dist/mcp-server/tools/definitions/gbif-search-species.tool.js +29 -14
  46. package/dist/mcp-server/tools/definitions/gbif-search-species.tool.js.map +1 -1
  47. package/dist/services/gbif/gbif-service.d.ts +1 -5
  48. package/dist/services/gbif/gbif-service.d.ts.map +1 -1
  49. package/dist/services/gbif/gbif-service.js +2 -13
  50. package/dist/services/gbif/gbif-service.js.map +1 -1
  51. package/package.json +2 -2
  52. package/server.json +3 -15
package/CLAUDE.md CHANGED
@@ -1,8 +1,8 @@
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  # Developer Protocol
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  **Server:** @cyanheads/gbif-biodiversity-mcp-server
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- **Version:** 0.2.2
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- **Framework:** [@cyanheads/mcp-ts-core](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) `^0.9.13`
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+ **Version:** 0.2.4
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+ **Framework:** [@cyanheads/mcp-ts-core](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) `^0.9.16`
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  **Engines:** Bun ≥1.3.0, Node ≥24.0.0
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  **MCP SDK:** `@modelcontextprotocol/sdk` ^1.29.0
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  **Zod:** ^4.4.3
package/README.md CHANGED
@@ -7,7 +7,7 @@
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  <div align="center">
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- [![Version](https://img.shields.io/badge/Version-0.2.2-blue.svg?style=flat-square)](./CHANGELOG.md) [![License](https://img.shields.io/badge/License-Apache%202.0-orange.svg?style=flat-square)](./LICENSE) [![Docker](https://img.shields.io/badge/Docker-ghcr.io-2496ED?style=flat-square&logo=docker&logoColor=white)](https://github.com/users/cyanheads/packages/container/package/gbif-biodiversity-mcp-server) [![MCP SDK](https://img.shields.io/badge/MCP%20SDK-^1.29.0-green.svg?style=flat-square)](https://modelcontextprotocol.io/) [![npm](https://img.shields.io/npm/v/@cyanheads/gbif-biodiversity-mcp-server?style=flat-square&logo=npm&logoColor=white)](https://www.npmjs.com/package/@cyanheads/gbif-biodiversity-mcp-server) [![TypeScript](https://img.shields.io/badge/TypeScript-^6.0.3-3178C6.svg?style=flat-square)](https://www.typescriptlang.org/) [![Bun](https://img.shields.io/badge/Bun-v1.3.2-blueviolet.svg?style=flat-square)](https://bun.sh/)
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+ [![Version](https://img.shields.io/badge/Version-0.2.4-blue.svg?style=flat-square)](./CHANGELOG.md) [![License](https://img.shields.io/badge/License-Apache%202.0-orange.svg?style=flat-square)](./LICENSE) [![Docker](https://img.shields.io/badge/Docker-ghcr.io-2496ED?style=flat-square&logo=docker&logoColor=white)](https://github.com/users/cyanheads/packages/container/package/gbif-biodiversity-mcp-server) [![MCP SDK](https://img.shields.io/badge/MCP%20SDK-^1.29.0-green.svg?style=flat-square)](https://modelcontextprotocol.io/) [![npm](https://img.shields.io/npm/v/@cyanheads/gbif-biodiversity-mcp-server?style=flat-square&logo=npm&logoColor=white)](https://www.npmjs.com/package/@cyanheads/gbif-biodiversity-mcp-server) [![TypeScript](https://img.shields.io/badge/TypeScript-^6.0.3-3178C6.svg?style=flat-square)](https://www.typescriptlang.org/) [![Bun](https://img.shields.io/badge/Bun-v1.3.2-blueviolet.svg?style=flat-square)](https://bun.sh/)
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  </div>
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@@ -308,7 +308,6 @@ All configuration is validated at startup via Zod schemas in `src/config/server-
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  | `MCP_GC_PRESSURE_INTERVAL_MS` | Opt-in Bun-only forced-GC pressure loop (ms). Try `60000` if RSS grows under sustained HTTP load. | `0` (disabled) |
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  | `LOGS_DIR` | Directory for log files (Node.js only) | `<project-root>/logs` |
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  | `STORAGE_PROVIDER_TYPE` | Storage backend: `in-memory`, `filesystem`, `supabase`, `cloudflare-kv/r2/d1` | `in-memory` |
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- | `GBIF_API_KEY` | GBIF API key. Sent as HTTP Basic Auth username for higher rate limits. | none |
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  | `GBIF_BASE_URL` | GBIF API base URL override | `https://api.gbif.org/v1` |
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  | `GBIF_REQUEST_TIMEOUT_MS` | HTTP request timeout in milliseconds | `10000` |
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  | `OTEL_ENABLED` | Enable OpenTelemetry | `false` |
package/dist/config/server-config.d.ts CHANGED
@@ -4,7 +4,6 @@
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  */
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  import { z } from '@cyanheads/mcp-ts-core';
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  declare const ServerConfigSchema: z.ZodObject<{
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- apiKey: z.ZodOptional<z.ZodString>;
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  baseUrl: z.ZodDefault<z.ZodString>;
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  requestTimeoutMs: z.ZodDefault<z.ZodCoercedNumber<unknown>>;
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  }, z.core.$strip>;
package/dist/config/server-config.d.ts.map CHANGED
@@ -1 +1 @@
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package/dist/config/server-config.js CHANGED
@@ -5,10 +5,6 @@
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  import { z } from '@cyanheads/mcp-ts-core';
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  import { parseEnvConfig } from '@cyanheads/mcp-ts-core/config';
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  const ServerConfigSchema = z.object({
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- apiKey: z
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- .string()
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- .optional()
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- .describe('GBIF API key for higher rate limits. Sent as HTTP Basic Auth username with empty password.'),
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  baseUrl: z.string().default('https://api.gbif.org/v1').describe('GBIF API base URL.'),
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  requestTimeoutMs: z.coerce
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  .number()
@@ -18,7 +14,6 @@ const ServerConfigSchema = z.object({
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  let _config;
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  export function getServerConfig() {
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  _config ??= parseEnvConfig(ServerConfigSchema, {
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- apiKey: 'GBIF_API_KEY',
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  baseUrl: 'GBIF_BASE_URL',
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  requestTimeoutMs: 'GBIF_REQUEST_TIMEOUT_MS',
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  });
package/dist/config/server-config.js.map CHANGED
@@ -1 +1 @@
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package/dist/index.js CHANGED
@@ -48,7 +48,6 @@ await createApp({
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  initGbifService(core.config, core.storage, {
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  baseUrl: cfg.baseUrl,
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  timeoutMs: cfg.requestTimeoutMs,
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- ...(cfg.apiKey ? { apiKey: cfg.apiKey } : {}),
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  });
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  },
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  });
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package/dist/mcp-server/resources/definitions/gbif-species.resource.js.map CHANGED
@@ -1 +1 @@
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1
+ {"version":3,"file":"gbif-species.resource.js","sourceRoot":"","sources":["../../../../src/mcp-server/resources/definitions/gbif-species.resource.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,QAAQ,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACrD,OAAO,EAAE,QAAQ,EAAE,eAAe,EAAE,MAAM,+BAA+B,CAAC;AAC1E,OAAO,EAAE,cAAc,EAAE,MAAM,iCAAiC,CAAC;AAEjE,MAAM,CAAC,MAAM,mBAAmB,GAAG,QAAQ,CAAC,2BAA2B,EAAE;IACvE,IAAI,EAAE,cAAc;IACpB,KAAK,EAAE,qBAAqB;IAC5B,WAAW,EACT,qFAAqF;QACrF,mEAAmE;IACrE,QAAQ,EAAE,kBAAkB;IAC5B,MAAM,EAAE,CAAC,CAAC,MAAM,CAAC;QACf,QAAQ,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,sCAAsC,CAAC;KACtE,CAAC;IACF,MAAM,EAAE,CAAC,CAAC,MAAM,CAAC;QACf,GAAG,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,0BAA0B,CAAC;QAC/D,cAAc,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,uCAAuC,CAAC;QACvF,aAAa,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,qCAAqC,CAAC;QACpF,UAAU,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,uBAAuB,CAAC;QACnE,cAAc,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,qCAAqC,CAAC;QACrF,IAAI,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,iBAAiB,CAAC;QACvD,eAAe,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,mCAAmC,CAAC;QACpF,OAAO,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,yBAAyB,CAAC;QAClE,MAAM,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,wBAAwB,CAAC;QAChE,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,uBAAuB,CAAC;QAC9D,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,uBAAuB,CAAC;QAC9D,MAAM,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,wBAAwB,CAAC;QAChE,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,uBAAuB,CAAC;QAC9D,cAAc,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,kCAAkC,CAAC;QAClF,OAAO,EAAE,CAAC,CAAC,OAAO,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,0CAA0C,CAAC;QACpF,WAAW,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,kCAAkC,CAAC;QAC/E,QAAQ,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,6BAA6B,CAAC;KACxE,CAAC;IAEF,KAAK,CAAC,OAAO,CAAC,MAAM,EAAE,GAAG;QACvB,MAAM,QAAQ,GAAG,QAAQ,CAAC,MAAM,CAAC,QAAQ,EAAE,EAAE,CAAC,CAAC;QAC/C,IAAI,MAAM,CAAC,KAAK,CAAC,QAAQ,CAAC,EAAE,CAAC;YAC3B,MAAM,eAAe,CACnB,uBAAuB,MAAM,CAAC,QAAQ,oCAAoC,CAC3E,CAAC;QACJ,CAAC;QACD,GAAG,CAAC,GAAG,CAAC,KAAK,CAAC,2BAA2B,EAAE,EAAE,QAAQ,EAAE,CAAC,CAAC;QACzD,MAAM,GAAG,GAAG,MAAM,cAAc,EAAE,CAAC,UAAU,CAAC,QAAQ,EAAE,GAAG,CAAC,CAAC;QAE7D,IAAI,CAAC,GAAG,CAAC,GAAG,EAAE,CAAC;YACb,MAAM,QAAQ,CAAC,aAAa,QAAQ,kCAAkC,CAAC,CAAC;QAC1E,CAAC;QAED,OAAO;YACL,GAAG,EAAE,GAAG,CAAC,GAAG;YACZ,cAAc,EAAE,GAAG,CAAC,cAAc;YAClC,aAAa,EAAE,GAAG,CAAC,aAAa;YAChC,UAAU,EAAE,GAAG,CAAC,UAAU;YAC1B,cAAc,EAAE,GAAG,CAAC,cAAc;YAClC,IAAI,EAAE,GAAG,CAAC,IAAI;YACd,eAAe,EAAE,GAAG,CAAC,eAAe;YACpC,OAAO,EAAE,GAAG,CAAC,OAAO;YACpB,MAAM,EAAE,GAAG,CAAC,MAAM;YAClB,KAAK,EAAE,GAAG,CAAC,KAAK;YAChB,KAAK,EAAE,GAAG,CAAC,KAAK;YAChB,MAAM,EAAE,GAAG,CAAC,MAAM;YAClB,KAAK,EAAE,GAAG,CAAC,KAAK;YAChB,cAAc,EAAE,GAAG,CAAC,cAAc;YAClC,WAAW,EAAE,GAAG,CAAC,WAAW;YAC5B,QAAQ,EAAE,GAAG,CAAC,QAAQ;YACtB,GAAG,CAAC,OAAO,GAAG,CAAC,OAAO,KAAK,SAAS,IAAI,EAAE,OAAO,EAAE,GAAG,CAAC,OAAO,EAAE,CAAC;SAClE,CAAC;IACJ,CAAC;CACF,CAAC,CAAC"}
package/dist/mcp-server/tools/definitions/gbif-count-occurrences.tool.d.ts CHANGED
@@ -11,5 +11,5 @@ export declare const gbifCountOccurrences: import("@cyanheads/mcp-ts-core").Tool
11
11
  year: z.ZodOptional<z.ZodString>;
12
12
  }, z.core.$strip>, z.ZodObject<{
13
13
  count: z.ZodNumber;
14
- }, z.core.$strip>, undefined>;
14
+ }, z.core.$strip>, undefined, undefined>;
15
15
  //# sourceMappingURL=gbif-count-occurrences.tool.d.ts.map
package/dist/mcp-server/tools/definitions/gbif-count-occurrences.tool.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"gbif-count-occurrences.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/gbif-count-occurrences.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAGjD,eAAO,MAAM,oBAAoB;;;;;;;;6BAkD/B,CAAC"}
1
+ {"version":3,"file":"gbif-count-occurrences.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/gbif-count-occurrences.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAGjD,eAAO,MAAM,oBAAoB;;;;;;;;wCAkD/B,CAAC"}
package/dist/mcp-server/tools/definitions/gbif-get-dataset.tool.d.ts CHANGED
@@ -29,5 +29,5 @@ export declare const gbifGetDataset: import("@cyanheads/mcp-ts-core").ToolDefini
29
29
  readonly code: JsonRpcErrorCode.NotFound;
30
30
  readonly when: "The datasetKey UUID does not match any dataset in GBIF.";
31
31
  readonly recovery: "Use gbif_search_datasets to find valid dataset keys, or check the UUID from an occurrence record's datasetKey field.";
32
- }]>;
32
+ }], undefined>;
33
33
  //# sourceMappingURL=gbif-get-dataset.tool.d.ts.map
package/dist/mcp-server/tools/definitions/gbif-get-dataset.tool.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"gbif-get-dataset.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/gbif-get-dataset.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAY,MAAM,+BAA+B,CAAC;AAK3E,eAAO,MAAM,cAAc;;;;;;;;;;;;;;;;;;;;;;;;;GAqIzB,CAAC"}
1
+ {"version":3,"file":"gbif-get-dataset.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/gbif-get-dataset.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAY,MAAM,+BAA+B,CAAC;AAK3E,eAAO,MAAM,cAAc;;;;;;;;;;;;;;;;;;;;;;;;;cAqIzB,CAAC"}
package/dist/mcp-server/tools/definitions/gbif-get-occurrence.tool.d.ts CHANGED
@@ -54,5 +54,5 @@ export declare const gbifGetOccurrence: import("@cyanheads/mcp-ts-core").ToolDef
54
54
  readonly code: JsonRpcErrorCode.NotFound;
55
55
  readonly when: "The occurrenceKey does not exist in GBIF.";
56
56
  readonly recovery: "Use gbif_search_occurrences to find valid occurrence keys.";
57
- }]>;
57
+ }], undefined>;
58
58
  //# sourceMappingURL=gbif-get-occurrence.tool.d.ts.map
package/dist/mcp-server/tools/definitions/gbif-get-occurrence.tool.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"gbif-get-occurrence.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/gbif-get-occurrence.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAY,MAAM,+BAA+B,CAAC;AAI3E,eAAO,MAAM,iBAAiB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GA8O5B,CAAC"}
1
+ {"version":3,"file":"gbif-get-occurrence.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/gbif-get-occurrence.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAY,MAAM,+BAA+B,CAAC;AAI3E,eAAO,MAAM,iBAAiB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;cA8O5B,CAAC"}
package/dist/mcp-server/tools/definitions/gbif-get-species-children.tool.d.ts CHANGED
@@ -18,8 +18,10 @@ export declare const gbifGetSpeciesChildren: import("@cyanheads/mcp-ts-core").To
18
18
  numOccurrences: z.ZodOptional<z.ZodNumber>;
19
19
  numDescendants: z.ZodOptional<z.ZodNumber>;
20
20
  }, z.core.$strip>>;
21
- offset: z.ZodNumber;
22
- limit: z.ZodNumber;
23
- endOfRecords: z.ZodBoolean;
24
- }, z.core.$strip>, undefined>;
21
+ }, z.core.$strip>, undefined, {
22
+ readonly offset: z.ZodNumber;
23
+ readonly limit: z.ZodNumber;
24
+ readonly endOfRecords: z.ZodBoolean;
25
+ readonly notice: z.ZodOptional<z.ZodString>;
26
+ }>;
25
27
  //# sourceMappingURL=gbif-get-species-children.tool.d.ts.map
package/dist/mcp-server/tools/definitions/gbif-get-species-children.tool.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"gbif-get-species-children.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/gbif-get-species-children.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAGjD,eAAO,MAAM,sBAAsB;;;;;;;;;;;;;;;;;;6BA2FjC,CAAC"}
1
+ {"version":3,"file":"gbif-get-species-children.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/gbif-get-species-children.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAYjD,eAAO,MAAM,sBAAsB;;;;;;;;;;;;;;;;;;;;EAiGjC,CAAC"}
package/dist/mcp-server/tools/definitions/gbif-get-species-children.tool.js CHANGED
@@ -4,6 +4,14 @@
4
4
  */
5
5
  import { tool, z } from '@cyanheads/mcp-ts-core';
6
6
  import { getGbifService } from '../../../services/gbif/gbif-service.js';
7
+ /** Pagination guidance when end of records is reached. */
8
+ function buildNotice(args) {
9
+ const { childCount, endOfRecords } = args;
10
+ if (childCount === 0 && endOfRecords) {
11
+ return 'This taxon has no direct children in the GBIF backbone at this rank, or the taxonKey does not exist. Verify the key with gbif_get_species.';
12
+ }
13
+ return;
14
+ }
7
15
  export const gbifGetSpeciesChildren = tool('gbif_get_species_children', {
8
16
  title: 'Get Species Children',
9
17
  description: 'List direct children of a backbone taxon — genera within a family, species within a genus, ' +
@@ -37,10 +45,17 @@ export const gbifGetSpeciesChildren = tool('gbif_get_species_children', {
37
45
  })
38
46
  .describe('A direct child taxon with key, name, rank, and status.'))
39
47
  .describe('Direct child taxa.'),
48
+ }),
49
+ // Pagination context and recovery guidance — reaches both structuredContent and content[].
50
+ enrichment: {
40
51
  offset: z.number().describe('Current pagination offset.'),
41
52
  limit: z.number().describe('Records returned in this page.'),
42
53
  endOfRecords: z.boolean().describe('True when there are no more results after this page.'),
43
- }),
54
+ notice: z
55
+ .string()
56
+ .optional()
57
+ .describe('Guidance when no children are found (empty taxon or invalid key). Absent on successful result pages.'),
58
+ },
44
59
  async handler(input, ctx) {
45
60
  ctx.log.info('Fetching species children', { taxonKey: input.taxonKey });
46
61
  const raw = await getGbifService().getSpeciesChildren(input.taxonKey, { limit: input.limit, offset: input.offset }, ctx);
@@ -54,17 +69,17 @@ export const gbifGetSpeciesChildren = tool('gbif_get_species_children', {
54
69
  numOccurrences: r.numOccurrences,
55
70
  numDescendants: r.numDescendants,
56
71
  }));
57
- return {
58
- children,
59
- offset: raw.offset ?? input.offset,
60
- limit: raw.limit ?? input.limit,
61
- endOfRecords: raw.endOfRecords ?? true,
62
- };
72
+ const offset = raw.offset ?? input.offset;
73
+ const limit = raw.limit ?? input.limit;
74
+ const endOfRecords = raw.endOfRecords ?? true;
75
+ ctx.enrich({ offset, limit, endOfRecords });
76
+ const notice = buildNotice({ childCount: children.length, endOfRecords });
77
+ if (notice)
78
+ ctx.enrich.notice(notice);
79
+ return { children };
63
80
  },
64
81
  format: (result) => {
65
- const lines = [
66
- `**Showing:** ${result.children.length} | **Limit:** ${result.limit} | **End of records:** ${result.endOfRecords} (offset ${result.offset})`,
67
- ];
82
+ const lines = [`**Results:** ${result.children.length}`];
68
83
  for (const child of result.children) {
69
84
  const name = child.canonicalName ?? 'Unknown';
70
85
  const sci = child.scientificName && child.scientificName !== name ? ` [${child.scientificName}]` : '';
@@ -82,9 +97,6 @@ export const gbifGetSpeciesChildren = tool('gbif_get_species_children', {
82
97
  if (child.numDescendants != null)
83
98
  lines.push(` Descendants: ${child.numDescendants}`);
84
99
  }
85
- if (!result.endOfRecords) {
86
- lines.push(`\n*More results available — use offset ${result.offset + result.limit} to continue.*`);
87
- }
88
100
  return [{ type: 'text', text: lines.join('\n') }];
89
101
  },
90
102
  });
package/dist/mcp-server/tools/definitions/gbif-get-species-children.tool.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"gbif-get-species-children.tool.js","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/gbif-get-species-children.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,IAAI,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,cAAc,EAAE,MAAM,iCAAiC,CAAC;AAEjE,MAAM,CAAC,MAAM,sBAAsB,GAAG,IAAI,CAAC,2BAA2B,EAAE;IACtE,KAAK,EAAE,sBAAsB;IAC7B,WAAW,EACT,6FAA6F;QAC7F,4FAA4F;QAC5F,4CAA4C;IAC9C,WAAW,EAAE,EAAE,YAAY,EAAE,IAAI,EAAE,cAAc,EAAE,IAAI,EAAE,aAAa,EAAE,KAAK,EAAE;IAC/E,KAAK,EAAE,CAAC,CAAC,MAAM,CAAC;QACd,QAAQ,EAAE,CAAC;aACR,MAAM,EAAE;aACR,QAAQ,CAAC,2EAA2E,CAAC;QACxF,KAAK,EAAE,CAAC;aACL,MAAM,EAAE;aACR,GAAG,CAAC,CAAC,CAAC;aACN,GAAG,CAAC,IAAI,CAAC;aACT,OAAO,CAAC,EAAE,CAAC;aACX,QAAQ,CAAC,sDAAsD,CAAC;QACnE,MAAM,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,oBAAoB,CAAC;KACpE,CAAC;IACF,MAAM,EAAE,CAAC,CAAC,MAAM,CAAC;QACf,QAAQ,EAAE,CAAC;aACR,KAAK,CACJ,CAAC;aACE,MAAM,CAAC;YACN,GAAG,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,0BAA0B,CAAC;YAC/D,cAAc,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,uCAAuC,CAAC;YACvF,aAAa,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,qCAAqC,CAAC;YACpF,IAAI,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,iBAAiB,CAAC;YACvD,eAAe,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,mCAAmC,CAAC;YACpF,cAAc,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,6BAA6B,CAAC;YAC7E,cAAc,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,0BAA0B,CAAC;YAC1E,cAAc,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,sCAAsC,CAAC;SACvF,CAAC;aACD,QAAQ,CAAC,wDAAwD,CAAC,CACtE;aACA,QAAQ,CAAC,oBAAoB,CAAC;QACjC,MAAM,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,4BAA4B,CAAC;QACzD,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,gCAAgC,CAAC;QAC5D,YAAY,EAAE,CAAC,CAAC,OAAO,EAAE,CAAC,QAAQ,CAAC,sDAAsD,CAAC;KAC3F,CAAC;IAEF,KAAK,CAAC,OAAO,CAAC,KAAK,EAAE,GAAG;QACtB,GAAG,CAAC,GAAG,CAAC,IAAI,CAAC,2BAA2B,EAAE,EAAE,QAAQ,EAAE,KAAK,CAAC,QAAQ,EAAE,CAAC,CAAC;QACxE,MAAM,GAAG,GAAG,MAAM,cAAc,EAAE,CAAC,kBAAkB,CACnD,KAAK,CAAC,QAAQ,EACd,EAAE,KAAK,EAAE,KAAK,CAAC,KAAK,EAAE,MAAM,EAAE,KAAK,CAAC,MAAM,EAAE,EAC5C,GAAG,CACJ,CAAC;QAEF,MAAM,QAAQ,GAAG,CAAC,GAAG,CAAC,OAAO,IAAI,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC;YAC/C,GAAG,EAAE,CAAC,CAAC,GAAG;YACV,cAAc,EAAE,CAAC,CAAC,cAAc;YAChC,aAAa,EAAE,CAAC,CAAC,aAAa;YAC9B,IAAI,EAAE,CAAC,CAAC,IAAI;YACZ,eAAe,EAAE,CAAC,CAAC,eAAe;YAClC,cAAc,EAAE,CAAC,CAAC,cAAc;YAChC,cAAc,EAAE,CAAC,CAAC,cAAc;YAChC,cAAc,EAAE,CAAC,CAAC,cAAc;SACjC,CAAC,CAAC,CAAC;QAEJ,OAAO;YACL,QAAQ;YACR,MAAM,EAAE,GAAG,CAAC,MAAM,IAAI,KAAK,CAAC,MAAM;YAClC,KAAK,EAAE,GAAG,CAAC,KAAK,IAAI,KAAK,CAAC,KAAK;YAC/B,YAAY,EAAE,GAAG,CAAC,YAAY,IAAI,IAAI;SACvC,CAAC;IACJ,CAAC;IAED,MAAM,EAAE,CAAC,MAAM,EAAE,EAAE;QACjB,MAAM,KAAK,GAAa;YACtB,gBAAgB,MAAM,CAAC,QAAQ,CAAC,MAAM,iBAAiB,MAAM,CAAC,KAAK,0BAA0B,MAAM,CAAC,YAAY,YAAY,MAAM,CAAC,MAAM,GAAG;SAC7I,CAAC;QACF,KAAK,MAAM,KAAK,IAAI,MAAM,CAAC,QAAQ,EAAE,CAAC;YACpC,MAAM,IAAI,GAAG,KAAK,CAAC,aAAa,IAAI,SAAS,CAAC;YAC9C,MAAM,GAAG,GACP,KAAK,CAAC,cAAc,IAAI,KAAK,CAAC,cAAc,KAAK,IAAI,CAAC,CAAC,CAAC,KAAK,KAAK,CAAC,cAAc,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC;YAC5F,KAAK,CAAC,IAAI,CAAC,SAAS,IAAI,KAAK,GAAG,EAAE,CAAC,CAAC;YACpC,IAAI,KAAK,CAAC,GAAG,IAAI,IAAI;gBAAE,KAAK,CAAC,IAAI,CAAC,UAAU,KAAK,CAAC,GAAG,EAAE,CAAC,CAAC;YACzD,IAAI,KAAK,CAAC,IAAI;gBAAE,KAAK,CAAC,IAAI,CAAC,WAAW,KAAK,CAAC,IAAI,EAAE,CAAC,CAAC;YACpD,IAAI,KAAK,CAAC,eAAe;gBAAE,KAAK,CAAC,IAAI,CAAC,aAAa,KAAK,CAAC,eAAe,EAAE,CAAC,CAAC;YAC5E,IAAI,KAAK,CAAC,cAAc;gBAAE,KAAK,CAAC,IAAI,CAAC,kBAAkB,KAAK,CAAC,cAAc,EAAE,CAAC,CAAC;YAC/E,IAAI,KAAK,CAAC,cAAc,IAAI,IAAI;gBAAE,KAAK,CAAC,IAAI,CAAC,kBAAkB,KAAK,CAAC,cAAc,EAAE,CAAC,CAAC;YACvF,IAAI,KAAK,CAAC,cAAc,IAAI,IAAI;gBAAE,KAAK,CAAC,IAAI,CAAC,kBAAkB,KAAK,CAAC,cAAc,EAAE,CAAC,CAAC;QACzF,CAAC;QACD,IAAI,CAAC,MAAM,CAAC,YAAY,EAAE,CAAC;YACzB,KAAK,CAAC,IAAI,CACR,0CAA0C,MAAM,CAAC,MAAM,GAAG,MAAM,CAAC,KAAK,gBAAgB,CACvF,CAAC;QACJ,CAAC;QACD,OAAO,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACpD,CAAC;CACF,CAAC,CAAC"}
1
+ {"version":3,"file":"gbif-get-species-children.tool.js","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/gbif-get-species-children.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,IAAI,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,cAAc,EAAE,MAAM,iCAAiC,CAAC;AAEjE,0DAA0D;AAC1D,SAAS,WAAW,CAAC,IAAmD;IACtE,MAAM,EAAE,UAAU,EAAE,YAAY,EAAE,GAAG,IAAI,CAAC;IAC1C,IAAI,UAAU,KAAK,CAAC,IAAI,YAAY,EAAE,CAAC;QACrC,OAAO,4IAA4I,CAAC;IACtJ,CAAC;IACD,OAAO;AACT,CAAC;AAED,MAAM,CAAC,MAAM,sBAAsB,GAAG,IAAI,CAAC,2BAA2B,EAAE;IACtE,KAAK,EAAE,sBAAsB;IAC7B,WAAW,EACT,6FAA6F;QAC7F,4FAA4F;QAC5F,4CAA4C;IAC9C,WAAW,EAAE,EAAE,YAAY,EAAE,IAAI,EAAE,cAAc,EAAE,IAAI,EAAE,aAAa,EAAE,KAAK,EAAE;IAC/E,KAAK,EAAE,CAAC,CAAC,MAAM,CAAC;QACd,QAAQ,EAAE,CAAC;aACR,MAAM,EAAE;aACR,QAAQ,CAAC,2EAA2E,CAAC;QACxF,KAAK,EAAE,CAAC;aACL,MAAM,EAAE;aACR,GAAG,CAAC,CAAC,CAAC;aACN,GAAG,CAAC,IAAI,CAAC;aACT,OAAO,CAAC,EAAE,CAAC;aACX,QAAQ,CAAC,sDAAsD,CAAC;QACnE,MAAM,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,oBAAoB,CAAC;KACpE,CAAC;IACF,MAAM,EAAE,CAAC,CAAC,MAAM,CAAC;QACf,QAAQ,EAAE,CAAC;aACR,KAAK,CACJ,CAAC;aACE,MAAM,CAAC;YACN,GAAG,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,0BAA0B,CAAC;YAC/D,cAAc,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,uCAAuC,CAAC;YACvF,aAAa,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,qCAAqC,CAAC;YACpF,IAAI,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,iBAAiB,CAAC;YACvD,eAAe,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,mCAAmC,CAAC;YACpF,cAAc,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,6BAA6B,CAAC;YAC7E,cAAc,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,0BAA0B,CAAC;YAC1E,cAAc,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,sCAAsC,CAAC;SACvF,CAAC;aACD,QAAQ,CAAC,wDAAwD,CAAC,CACtE;aACA,QAAQ,CAAC,oBAAoB,CAAC;KAClC,CAAC;IAEF,2FAA2F;IAC3F,UAAU,EAAE;QACV,MAAM,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,4BAA4B,CAAC;QACzD,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,gCAAgC,CAAC;QAC5D,YAAY,EAAE,CAAC,CAAC,OAAO,EAAE,CAAC,QAAQ,CAAC,sDAAsD,CAAC;QAC1F,MAAM,EAAE,CAAC;aACN,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CACP,sGAAsG,CACvG;KACJ;IAED,KAAK,CAAC,OAAO,CAAC,KAAK,EAAE,GAAG;QACtB,GAAG,CAAC,GAAG,CAAC,IAAI,CAAC,2BAA2B,EAAE,EAAE,QAAQ,EAAE,KAAK,CAAC,QAAQ,EAAE,CAAC,CAAC;QACxE,MAAM,GAAG,GAAG,MAAM,cAAc,EAAE,CAAC,kBAAkB,CACnD,KAAK,CAAC,QAAQ,EACd,EAAE,KAAK,EAAE,KAAK,CAAC,KAAK,EAAE,MAAM,EAAE,KAAK,CAAC,MAAM,EAAE,EAC5C,GAAG,CACJ,CAAC;QAEF,MAAM,QAAQ,GAAG,CAAC,GAAG,CAAC,OAAO,IAAI,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC;YAC/C,GAAG,EAAE,CAAC,CAAC,GAAG;YACV,cAAc,EAAE,CAAC,CAAC,cAAc;YAChC,aAAa,EAAE,CAAC,CAAC,aAAa;YAC9B,IAAI,EAAE,CAAC,CAAC,IAAI;YACZ,eAAe,EAAE,CAAC,CAAC,eAAe;YAClC,cAAc,EAAE,CAAC,CAAC,cAAc;YAChC,cAAc,EAAE,CAAC,CAAC,cAAc;YAChC,cAAc,EAAE,CAAC,CAAC,cAAc;SACjC,CAAC,CAAC,CAAC;QAEJ,MAAM,MAAM,GAAG,GAAG,CAAC,MAAM,IAAI,KAAK,CAAC,MAAM,CAAC;QAC1C,MAAM,KAAK,GAAG,GAAG,CAAC,KAAK,IAAI,KAAK,CAAC,KAAK,CAAC;QACvC,MAAM,YAAY,GAAG,GAAG,CAAC,YAAY,IAAI,IAAI,CAAC;QAE9C,GAAG,CAAC,MAAM,CAAC,EAAE,MAAM,EAAE,KAAK,EAAE,YAAY,EAAE,CAAC,CAAC;QAC5C,MAAM,MAAM,GAAG,WAAW,CAAC,EAAE,UAAU,EAAE,QAAQ,CAAC,MAAM,EAAE,YAAY,EAAE,CAAC,CAAC;QAC1E,IAAI,MAAM;YAAE,GAAG,CAAC,MAAM,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;QAEtC,OAAO,EAAE,QAAQ,EAAE,CAAC;IACtB,CAAC;IAED,MAAM,EAAE,CAAC,MAAM,EAAE,EAAE;QACjB,MAAM,KAAK,GAAa,CAAC,gBAAgB,MAAM,CAAC,QAAQ,CAAC,MAAM,EAAE,CAAC,CAAC;QACnE,KAAK,MAAM,KAAK,IAAI,MAAM,CAAC,QAAQ,EAAE,CAAC;YACpC,MAAM,IAAI,GAAG,KAAK,CAAC,aAAa,IAAI,SAAS,CAAC;YAC9C,MAAM,GAAG,GACP,KAAK,CAAC,cAAc,IAAI,KAAK,CAAC,cAAc,KAAK,IAAI,CAAC,CAAC,CAAC,KAAK,KAAK,CAAC,cAAc,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC;YAC5F,KAAK,CAAC,IAAI,CAAC,SAAS,IAAI,KAAK,GAAG,EAAE,CAAC,CAAC;YACpC,IAAI,KAAK,CAAC,GAAG,IAAI,IAAI;gBAAE,KAAK,CAAC,IAAI,CAAC,UAAU,KAAK,CAAC,GAAG,EAAE,CAAC,CAAC;YACzD,IAAI,KAAK,CAAC,IAAI;gBAAE,KAAK,CAAC,IAAI,CAAC,WAAW,KAAK,CAAC,IAAI,EAAE,CAAC,CAAC;YACpD,IAAI,KAAK,CAAC,eAAe;gBAAE,KAAK,CAAC,IAAI,CAAC,aAAa,KAAK,CAAC,eAAe,EAAE,CAAC,CAAC;YAC5E,IAAI,KAAK,CAAC,cAAc;gBAAE,KAAK,CAAC,IAAI,CAAC,kBAAkB,KAAK,CAAC,cAAc,EAAE,CAAC,CAAC;YAC/E,IAAI,KAAK,CAAC,cAAc,IAAI,IAAI;gBAAE,KAAK,CAAC,IAAI,CAAC,kBAAkB,KAAK,CAAC,cAAc,EAAE,CAAC,CAAC;YACvF,IAAI,KAAK,CAAC,cAAc,IAAI,IAAI;gBAAE,KAAK,CAAC,IAAI,CAAC,kBAAkB,KAAK,CAAC,cAAc,EAAE,CAAC,CAAC;QACzF,CAAC;QACD,OAAO,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACpD,CAAC;CACF,CAAC,CAAC"}
package/dist/mcp-server/tools/definitions/gbif-get-species-classification.tool.d.ts CHANGED
@@ -18,5 +18,5 @@ export declare const gbifGetSpeciesClassification: import("@cyanheads/mcp-ts-cor
18
18
  readonly code: JsonRpcErrorCode.NotFound;
19
19
  readonly when: "The taxonKey does not exist in the GBIF backbone.";
20
20
  readonly recovery: "Use gbif_match_species to resolve a name to a valid backbone taxon key.";
21
- }]>;
21
+ }], undefined>;
22
22
  //# sourceMappingURL=gbif-get-species-classification.tool.d.ts.map
package/dist/mcp-server/tools/definitions/gbif-get-species-classification.tool.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"gbif-get-species-classification.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/gbif-get-species-classification.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAY,MAAM,+BAA+B,CAAC;AAG3E,eAAO,MAAM,4BAA4B;;;;;;;;;;;;;;GAyFvC,CAAC"}
1
+ {"version":3,"file":"gbif-get-species-classification.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/gbif-get-species-classification.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAY,MAAM,+BAA+B,CAAC;AAG3E,eAAO,MAAM,4BAA4B;;;;;;;;;;;;;;cAyFvC,CAAC"}
package/dist/mcp-server/tools/definitions/gbif-get-species.tool.d.ts CHANGED
@@ -41,5 +41,5 @@ export declare const gbifGetSpecies: import("@cyanheads/mcp-ts-core").ToolDefini
41
41
  readonly code: JsonRpcErrorCode.NotFound;
42
42
  readonly when: "The taxonKey does not exist in the GBIF backbone.";
43
43
  readonly recovery: "Use gbif_match_species to resolve a name to a valid backbone key, or gbif_search_species to browse.";
44
- }]>;
44
+ }], undefined>;
45
45
  //# sourceMappingURL=gbif-get-species.tool.d.ts.map
package/dist/mcp-server/tools/definitions/gbif-get-species.tool.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"gbif-get-species.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/gbif-get-species.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAY,MAAM,+BAA+B,CAAC;AAI3E,eAAO,MAAM,cAAc;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GA4LzB,CAAC"}
1
+ {"version":3,"file":"gbif-get-species.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/gbif-get-species.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAY,MAAM,+BAA+B,CAAC;AAI3E,eAAO,MAAM,cAAc;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;cA4LzB,CAAC"}
package/dist/mcp-server/tools/definitions/gbif-match-species.tool.d.ts CHANGED
@@ -45,5 +45,5 @@ export declare const gbifMatchSpecies: import("@cyanheads/mcp-ts-core").ToolDefi
45
45
  readonly code: JsonRpcErrorCode.NotFound;
46
46
  readonly when: "matchType is NONE — no candidate met the match threshold.";
47
47
  readonly recovery: "Try a broader name, remove the strict flag, or search with gbif_search_species instead.";
48
- }]>;
48
+ }], undefined>;
49
49
  //# sourceMappingURL=gbif-match-species.tool.d.ts.map
package/dist/mcp-server/tools/definitions/gbif-match-species.tool.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"gbif-match-species.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/gbif-match-species.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAGjE,eAAO,MAAM,gBAAgB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAsK3B,CAAC"}
1
+ {"version":3,"file":"gbif-match-species.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/gbif-match-species.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAGjE,eAAO,MAAM,gBAAgB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;cAsK3B,CAAC"}
package/dist/mcp-server/tools/definitions/gbif-occurrence-facets.tool.d.ts CHANGED
@@ -42,5 +42,8 @@ export declare const gbifOccurrenceFacets: import("@cyanheads/mcp-ts-core").Tool
42
42
  name: z.ZodString;
43
43
  count: z.ZodNumber;
44
44
  }, z.core.$strip>>;
45
- }, z.core.$strip>, undefined>;
45
+ }, z.core.$strip>, undefined, {
46
+ readonly facetLimit: z.ZodNumber;
47
+ readonly notice: z.ZodOptional<z.ZodString>;
48
+ }>;
46
49
  //# sourceMappingURL=gbif-occurrence-facets.tool.d.ts.map
package/dist/mcp-server/tools/definitions/gbif-occurrence-facets.tool.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"gbif-occurrence-facets.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/gbif-occurrence-facets.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AA+BjD,eAAO,MAAM,oBAAoB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;6BAsG/B,CAAC"}
1
+ {"version":3,"file":"gbif-occurrence-facets.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/gbif-occurrence-facets.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AA+BjD,eAAO,MAAM,oBAAoB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EAsH/B,CAAC"}
package/dist/mcp-server/tools/definitions/gbif-occurrence-facets.tool.js CHANGED
@@ -81,6 +81,14 @@ export const gbifOccurrenceFacets = tool('gbif_occurrence_facets', {
81
81
  .describe('A facet value with its occurrence count.'))
82
82
  .describe('Facet values ranked by count descending (top facetLimit entries).'),
83
83
  }),
84
+ // Agent-facing context — reaches both structuredContent and content[].
85
+ enrichment: {
86
+ facetLimit: z.number().describe('Maximum facet values requested.'),
87
+ notice: z
88
+ .string()
89
+ .optional()
90
+ .describe('Guidance when no facet values were returned. Absent when counts are non-empty.'),
91
+ },
84
92
  async handler(input, ctx) {
85
93
  ctx.log.info('Fetching occurrence facets', { facet: input.facet, taxonKey: input.taxonKey });
86
94
  const raw = await getGbifService().getOccurrenceFacets({
@@ -97,6 +105,10 @@ export const gbifOccurrenceFacets = tool('gbif_occurrence_facets', {
97
105
  name: c.name ?? '',
98
106
  count: c.count ?? 0,
99
107
  }));
108
+ ctx.enrich({ facetLimit: input.facetLimit });
109
+ if (counts.length === 0) {
110
+ ctx.enrich.notice('No facet values returned. The filter combination may match zero occurrences, or the facet dimension has no data for the given scope.');
111
+ }
100
112
  return {
101
113
  facet: input.facet,
102
114
  totalOccurrences: raw.count ?? 0,
package/dist/mcp-server/tools/definitions/gbif-occurrence-facets.tool.js.map CHANGED
@@ -1 +1 @@
1
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1
+ {"version":3,"file":"gbif-occurrence-facets.tool.js","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/gbif-occurrence-facets.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,IAAI,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,cAAc,EAAE,MAAM,iCAAiC,CAAC;AAEjE,MAAM,sBAAsB,GAAG;IAC7B,mBAAmB;IACnB,qBAAqB;IACrB,oBAAoB;IACpB,iBAAiB;IACjB,iBAAiB;IACjB,mBAAmB;IACnB,YAAY;IACZ,YAAY;CACJ,CAAC;AAEX,MAAM,YAAY,GAAG;IACnB,iBAAiB;IACjB,SAAS;IACT,gBAAgB;IAChB,MAAM;IACN,aAAa;IACb,aAAa;IACb,YAAY;IACZ,WAAW;IACX,WAAW;IACX,YAAY;IACZ,WAAW;IACX,aAAa;IACb,oBAAoB;IACpB,OAAO;CACC,CAAC;AAEX,MAAM,CAAC,MAAM,oBAAoB,GAAG,IAAI,CAAC,wBAAwB,EAAE;IACjE,KAAK,EAAE,8BAA8B;IACrC,WAAW,EACT,+GAA+G;QAC/G,oGAAoG;QACpG,gGAAgG;QAChG,wEAAwE;QACxE,yFAAyF;IAC3F,WAAW,EAAE,EAAE,YAAY,EAAE,IAAI,EAAE,cAAc,EAAE,IAAI,EAAE,aAAa,EAAE,KAAK,EAAE;IAC/E,KAAK,EAAE,CAAC,CAAC,MAAM,CAAC;QACd,KAAK,EAAE,CAAC;aACL,IAAI,CAAC,YAAY,CAAC;aAClB,QAAQ,CAAC,gFAAgF,CAAC;QAC7F,QAAQ,EAAE,CAAC;aACR,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CACP,6HAA6H,CAC9H;QACH,OAAO,EAAE,CAAC;aACP,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CAAC,0DAA0D,CAAC;QACvE,IAAI,EAAE,CAAC;aACJ,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CACP,4FAA4F,CAC7F;QACH,aAAa,EAAE,CAAC;aACb,IAAI,CAAC,sBAAsB,CAAC;aAC5B,QAAQ,EAAE;aACV,QAAQ,CAAC,sCAAsC,CAAC;QACnD,QAAQ,EAAE,CAAC;aACR,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CACP,gJAAgJ,CACjJ;QACH,UAAU,EAAE,CAAC;aACV,MAAM,EAAE;aACR,GAAG,CAAC,CAAC,CAAC;aACN,GAAG,CAAC,GAAG,CAAC;aACR,OAAO,CAAC,EAAE,CAAC;aACX,QAAQ,CAAC,iEAAiE,CAAC;KAC/E,CAAC;IACF,MAAM,EAAE,CAAC,CAAC,MAAM,CAAC;QACf,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,iCAAiC,CAAC;QAC7D,gBAAgB,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,qDAAqD,CAAC;QAC5F,MAAM,EAAE,CAAC;aACN,KAAK,CACJ,CAAC;aACE,MAAM,CAAC;YACN,IAAI,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,wDAAwD,CAAC;YACnF,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,wCAAwC,CAAC;SACrE,CAAC;aACD,QAAQ,CAAC,0CAA0C,CAAC,CACxD;aACA,QAAQ,CAAC,mEAAmE,CAAC;KACjF,CAAC;IAEF,uEAAuE;IACvE,UAAU,EAAE;QACV,UAAU,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,iCAAiC,CAAC;QAClE,MAAM,EAAE,CAAC;aACN,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CAAC,gFAAgF,CAAC;KAC9F;IAED,KAAK,CAAC,OAAO,CAAC,KAAK,EAAE,GAAG;QACtB,GAAG,CAAC,GAAG,CAAC,IAAI,CAAC,4BAA4B,EAAE,EAAE,KAAK,EAAE,KAAK,CAAC,KAAK,EAAE,QAAQ,EAAE,KAAK,CAAC,QAAQ,EAAE,CAAC,CAAC;QAC7F,MAAM,GAAG,GAAG,MAAM,cAAc,EAAE,CAAC,mBAAmB,CACpD;YACE,KAAK,EAAE,KAAK,CAAC,KAAK;YAClB,GAAG,CAAC,KAAK,CAAC,QAAQ,KAAK,SAAS,IAAI,EAAE,QAAQ,EAAE,KAAK,CAAC,QAAQ,EAAE,CAAC;YACjE,GAAG,CAAC,KAAK,CAAC,OAAO,EAAE,IAAI,EAAE,IAAI,EAAE,OAAO,EAAE,KAAK,CAAC,OAAO,EAAE,CAAC;YACxD,GAAG,CAAC,KAAK,CAAC,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,KAAK,CAAC,IAAI,EAAE,CAAC;YAC/C,GAAG,CAAC,KAAK,CAAC,aAAa,IAAI,EAAE,aAAa,EAAE,KAAK,CAAC,aAAa,EAAE,CAAC;YAClE,GAAG,CAAC,KAAK,CAAC,QAAQ,EAAE,IAAI,EAAE,IAAI,EAAE,QAAQ,EAAE,KAAK,CAAC,QAAQ,EAAE,CAAC;YAC3D,UAAU,EAAE,KAAK,CAAC,UAAU;SAC7B,EACD,GAAG,CACJ,CAAC;QAEF,MAAM,SAAS,GAAG,GAAG,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,KAAK,EAAE,WAAW,EAAE,KAAK,KAAK,CAAC,KAAK,CAAC,WAAW,EAAE,CAAC,CAAC;QAChG,MAAM,MAAM,GAAG,CAAC,SAAS,EAAE,MAAM,IAAI,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC;YACnD,IAAI,EAAE,CAAC,CAAC,IAAI,IAAI,EAAE;YAClB,KAAK,EAAE,CAAC,CAAC,KAAK,IAAI,CAAC;SACpB,CAAC,CAAC,CAAC;QAEJ,GAAG,CAAC,MAAM,CAAC,EAAE,UAAU,EAAE,KAAK,CAAC,UAAU,EAAE,CAAC,CAAC;QAC7C,IAAI,MAAM,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACxB,GAAG,CAAC,MAAM,CAAC,MAAM,CACf,sIAAsI,CACvI,CAAC;QACJ,CAAC;QAED,OAAO;YACL,KAAK,EAAE,KAAK,CAAC,KAAK;YAClB,gBAAgB,EAAE,GAAG,CAAC,KAAK,IAAI,CAAC;YAChC,MAAM;SACP,CAAC;IACJ,CAAC;IAED,MAAM,EAAE,CAAC,MAAM,EAAE,EAAE;QACjB,MAAM,KAAK,GAAa;YACtB,MAAM,MAAM,CAAC,KAAK,QAAQ;YAC1B,mCAAmC,MAAM,CAAC,gBAAgB,EAAE;YAC5D,SAAS,MAAM,CAAC,MAAM,CAAC,MAAM,YAAY;SAC1C,CAAC;QACF,MAAM,KAAK,GAAG,MAAM,CAAC,gBAAgB,IAAI,CAAC,CAAC;QAC3C,KAAK,MAAM,KAAK,IAAI,MAAM,CAAC,MAAM,EAAE,CAAC;YAClC,MAAM,GAAG,GAAG,CAAC,CAAC,KAAK,CAAC,KAAK,GAAG,KAAK,CAAC,GAAG,GAAG,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC;YACrD,KAAK,CAAC,IAAI,CAAC,OAAO,KAAK,CAAC,IAAI,OAAO,KAAK,CAAC,KAAK,CAAC,cAAc,EAAE,KAAK,GAAG,aAAa,CAAC,CAAC;QACxF,CAAC;QACD,OAAO,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACpD,CAAC;CACF,CAAC,CAAC"}
package/dist/mcp-server/tools/definitions/gbif-search-datasets.tool.d.ts CHANGED
@@ -26,9 +26,11 @@ export declare const gbifSearchDatasets: import("@cyanheads/mcp-ts-core").ToolDe
26
26
  publishingCountry: z.ZodOptional<z.ZodString>;
27
27
  recordCount: z.ZodOptional<z.ZodNumber>;
28
28
  }, z.core.$strip>>;
29
- totalCount: z.ZodNumber;
30
- offset: z.ZodNumber;
31
- limit: z.ZodNumber;
32
- endOfRecords: z.ZodBoolean;
33
- }, z.core.$strip>, undefined>;
29
+ }, z.core.$strip>, undefined, {
30
+ readonly totalCount: z.ZodNumber;
31
+ readonly offset: z.ZodNumber;
32
+ readonly limit: z.ZodNumber;
33
+ readonly endOfRecords: z.ZodBoolean;
34
+ readonly notice: z.ZodOptional<z.ZodString>;
35
+ }>;
34
36
  //# sourceMappingURL=gbif-search-datasets.tool.d.ts.map
package/dist/mcp-server/tools/definitions/gbif-search-datasets.tool.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"gbif-search-datasets.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/gbif-search-datasets.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAIjD,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;6BA4G7B,CAAC"}
1
+ {"version":3,"file":"gbif-search-datasets.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/gbif-search-datasets.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAoBjD,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EAoH7B,CAAC"}
package/dist/mcp-server/tools/definitions/gbif-search-datasets.tool.js CHANGED
@@ -5,6 +5,17 @@
5
5
  import { tool, z } from '@cyanheads/mcp-ts-core';
6
6
  import { getGbifService } from '../../../services/gbif/gbif-service.js';
7
7
  import { stripHtml } from '../utils.js';
8
+ /** Empty-result and pagination-overshoot guidance. */
9
+ function buildNotice(args) {
10
+ const { totalCount, datasetCount, offset } = args;
11
+ if (totalCount === 0) {
12
+ return 'No datasets matched. Try a shorter keyword, remove the type or country filter, or omit hostingOrg.';
13
+ }
14
+ if (datasetCount === 0 && offset > 0 && offset >= totalCount) {
15
+ return `Offset ${offset} exceeds totalCount (${totalCount}). Reset offset to 0 or reduce it below ${totalCount} to page through results.`;
16
+ }
17
+ return;
18
+ }
8
19
  export const gbifSearchDatasets = tool('gbif_search_datasets', {
9
20
  title: 'Search Datasets',
10
21
  description: 'Search GBIF datasets by keyword, type, country, or publishing organization. ' +
@@ -49,11 +60,18 @@ export const gbifSearchDatasets = tool('gbif_search_datasets', {
49
60
  })
50
61
  .describe('A GBIF dataset with key, title, type, license, and record count.'))
51
62
  .describe('Matching datasets.'),
63
+ }),
64
+ // Pagination context and recovery guidance — reaches both structuredContent and content[].
65
+ enrichment: {
52
66
  totalCount: z.number().describe('Total matching datasets before pagination.'),
53
67
  offset: z.number().describe('Current pagination offset.'),
54
68
  limit: z.number().describe('Datasets returned in this page.'),
55
69
  endOfRecords: z.boolean().describe('True when there are no more results after this page.'),
56
- }),
70
+ notice: z
71
+ .string()
72
+ .optional()
73
+ .describe('Guidance when results are empty or paging overshot. Absent on successful result pages.'),
74
+ },
57
75
  async handler(input, ctx) {
58
76
  ctx.log.info('Searching datasets', { q: input.q, type: input.type });
59
77
  const raw = await getGbifService().searchDatasets({
@@ -74,18 +92,18 @@ export const gbifSearchDatasets = tool('gbif_search_datasets', {
74
92
  publishingCountry: r.publishingCountry,
75
93
  recordCount: r.numRecords ?? r.recordCount,
76
94
  }));
77
- return {
78
- datasets,
79
- totalCount: raw.count ?? 0,
80
- offset: raw.offset ?? input.offset,
81
- limit: raw.limit ?? input.limit,
82
- endOfRecords: raw.endOfRecords ?? true,
83
- };
95
+ const totalCount = raw.count ?? 0;
96
+ const offset = raw.offset ?? input.offset;
97
+ const limit = raw.limit ?? input.limit;
98
+ const endOfRecords = raw.endOfRecords ?? true;
99
+ ctx.enrich({ totalCount, offset, limit, endOfRecords });
100
+ const notice = buildNotice({ totalCount, datasetCount: datasets.length, offset });
101
+ if (notice)
102
+ ctx.enrich.notice(notice);
103
+ return { datasets };
84
104
  },
85
105
  format: (result) => {
86
- const lines = [
87
- `**Total matches:** ${result.totalCount} | **Showing:** ${result.datasets.length} | **Limit:** ${result.limit} | **End of records:** ${result.endOfRecords} (offset ${result.offset})`,
88
- ];
106
+ const lines = [`**Results:** ${result.datasets.length}`];
89
107
  for (const ds of result.datasets) {
90
108
  lines.push(`\n## ${ds.title ?? 'Untitled dataset'}`);
91
109
  if (ds.key)
@@ -103,9 +121,6 @@ export const gbifSearchDatasets = tool('gbif_search_datasets', {
103
121
  if (ds.description)
104
122
  lines.push(`${ds.description}${ds.description.length >= 300 ? '…' : ''}`);
105
123
  }
106
- if (!result.endOfRecords) {
107
- lines.push(`\n*More results — use offset ${result.offset + result.limit} to continue.*`);
108
- }
109
124
  return [{ type: 'text', text: lines.join('\n') }];
110
125
  },
111
126
  });
package/dist/mcp-server/tools/definitions/gbif-search-datasets.tool.js.map CHANGED
@@ -1 +1 @@
1
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1
+ 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package/dist/mcp-server/tools/definitions/gbif-search-occurrences.tool.d.ts CHANGED
@@ -54,10 +54,6 @@ export declare const gbifSearchOccurrences: import("@cyanheads/mcp-ts-core").Too
54
54
  recordedBy: z.ZodOptional<z.ZodString>;
55
55
  issues: z.ZodOptional<z.ZodArray<z.ZodString>>;
56
56
  }, z.core.$strip>>;
57
- totalCount: z.ZodNumber;
58
- offset: z.ZodNumber;
59
- limit: z.ZodNumber;
60
- endOfRecords: z.ZodBoolean;
61
57
  }, z.core.$strip>, readonly [{
62
58
  readonly reason: "pagination_cap_exceeded";
63
59
  readonly code: JsonRpcErrorCode.ValidationError;
@@ -68,5 +64,11 @@ export declare const gbifSearchOccurrences: import("@cyanheads/mcp-ts-core").Too
68
64
  readonly code: JsonRpcErrorCode.InternalError;
69
65
  readonly when: "The GBIF occurrence search API returned an unexpected error.";
70
66
  readonly recovery: "Retry the request or narrow the filters. Check that geometry WKT is valid if supplied.";
71
- }]>;
67
+ }], {
68
+ readonly totalCount: z.ZodNumber;
69
+ readonly offset: z.ZodNumber;
70
+ readonly limit: z.ZodNumber;
71
+ readonly endOfRecords: z.ZodBoolean;
72
+ readonly notice: z.ZodOptional<z.ZodString>;
73
+ }>;
72
74
  //# sourceMappingURL=gbif-search-occurrences.tool.d.ts.map
package/dist/mcp-server/tools/definitions/gbif-search-occurrences.tool.d.ts.map CHANGED
@@ -1 +1 @@
1
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1
+ {"version":3,"file":"gbif-search-occurrences.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/gbif-search-occurrences.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAqBjE,eAAO,MAAM,qBAAqB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EAmUhC,CAAC"}
package/dist/mcp-server/tools/definitions/gbif-search-occurrences.tool.js CHANGED
@@ -5,6 +5,17 @@
5
5
  import { tool, z } from '@cyanheads/mcp-ts-core';
6
6
  import { JsonRpcErrorCode } from '@cyanheads/mcp-ts-core/errors';
7
7
  import { getGbifService } from '../../../services/gbif/gbif-service.js';
8
+ /** Empty-result and pagination-overshoot guidance. */
9
+ function buildNotice(args) {
10
+ const { totalCount, occurrenceCount, offset } = args;
11
+ if (totalCount === 0) {
12
+ return 'No occurrences matched the filters. Try broadening the taxon (use gbif_match_species for a reliable taxonKey), relaxing geographic filters, expanding the year range, or removing basisOfRecord.';
13
+ }
14
+ if (occurrenceCount === 0 && offset > 0 && offset >= totalCount) {
15
+ return `Offset ${offset} exceeds totalCount (${totalCount}). Reset offset to 0 or reduce it below ${totalCount} to page through results.`;
16
+ }
17
+ return;
18
+ }
8
19
  const PAGINATION_CAP = 99_000;
9
20
  export const gbifSearchOccurrences = tool('gbif_search_occurrences', {
10
21
  title: 'Search Occurrences',
@@ -151,11 +162,18 @@ export const gbifSearchOccurrences = tool('gbif_search_occurrences', {
151
162
  })
152
163
  .describe('A single occurrence record with location, taxon, date, and provenance fields.'))
153
164
  .describe('Occurrence records matching the filters.'),
165
+ }),
166
+ // Pagination context and recovery guidance — reaches both structuredContent and content[].
167
+ enrichment: {
154
168
  totalCount: z.number().describe('Total matching occurrences before pagination.'),
155
169
  offset: z.number().describe('Current pagination offset.'),
156
170
  limit: z.number().describe('Records returned in this page.'),
157
171
  endOfRecords: z.boolean().describe('True when there are no more results after this page.'),
158
- }),
172
+ notice: z
173
+ .string()
174
+ .optional()
175
+ .describe('Guidance when results are empty or paging overshot. Absent on successful result pages.'),
176
+ },
159
177
  errors: [
160
178
  {
161
179
  reason: 'pagination_cap_exceeded',
@@ -223,18 +241,18 @@ export const gbifSearchOccurrences = tool('gbif_search_occurrences', {
223
241
  recordedBy: r.recordedBy,
224
242
  issues: r.issues?.length ? r.issues : undefined,
225
243
  }));
226
- return {
227
- occurrences,
228
- totalCount: raw.count ?? 0,
229
- offset: raw.offset ?? input.offset,
230
- limit: raw.limit ?? input.limit,
231
- endOfRecords: raw.endOfRecords ?? true,
232
- };
244
+ const totalCount = raw.count ?? 0;
245
+ const offset = raw.offset ?? input.offset;
246
+ const limit = raw.limit ?? input.limit;
247
+ const endOfRecords = raw.endOfRecords ?? true;
248
+ ctx.enrich({ totalCount, offset, limit, endOfRecords });
249
+ const notice = buildNotice({ totalCount, occurrenceCount: occurrences.length, offset });
250
+ if (notice)
251
+ ctx.enrich.notice(notice);
252
+ return { occurrences };
233
253
  },
234
254
  format: (result) => {
235
- const lines = [
236
- `**Total matches:** ${result.totalCount} | **Showing:** ${result.occurrences.length} | **Limit:** ${result.limit} | **End of records:** ${result.endOfRecords} (offset ${result.offset})`,
237
- ];
255
+ const lines = [`**Results:** ${result.occurrences.length}`];
238
256
  for (const occ of result.occurrences) {
239
257
  const canonical = occ.canonicalName ?? occ.scientificName ?? 'Unknown taxon';
240
258
  const sci = occ.scientificName && occ.scientificName !== canonical ? ` [${occ.scientificName}]` : '';
@@ -284,9 +302,6 @@ export const gbifSearchOccurrences = tool('gbif_search_occurrences', {
284
302
  if (occ.issues?.length)
285
303
  lines.push(`**Issues:** ${occ.issues.join(', ')}`);
286
304
  }
287
- if (!result.endOfRecords) {
288
- lines.push(`\n*More results — use offset ${result.offset + result.limit} to continue.*`);
289
- }
290
305
  return [{ type: 'text', text: lines.join('\n') }];
291
306
  },
292
307
  });
package/dist/mcp-server/tools/definitions/gbif-search-occurrences.tool.js.map CHANGED
@@ -1 +1 @@
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package/dist/mcp-server/tools/definitions/gbif-search-publishers.tool.d.ts CHANGED
@@ -15,9 +15,11 @@ export declare const gbifSearchPublishers: import("@cyanheads/mcp-ts-core").Tool
15
15
  country: z.ZodOptional<z.ZodString>;
16
16
  city: z.ZodOptional<z.ZodString>;
17
17
  }, z.core.$strip>>;
18
- totalCount: z.ZodNumber;
19
- offset: z.ZodNumber;
20
- limit: z.ZodNumber;
21
- endOfRecords: z.ZodBoolean;
22
- }, z.core.$strip>, undefined>;
18
+ }, z.core.$strip>, undefined, {
19
+ readonly totalCount: z.ZodNumber;
20
+ readonly offset: z.ZodNumber;
21
+ readonly limit: z.ZodNumber;
22
+ readonly endOfRecords: z.ZodBoolean;
23
+ readonly notice: z.ZodOptional<z.ZodString>;
24
+ }>;
23
25
  //# sourceMappingURL=gbif-search-publishers.tool.d.ts.map
package/dist/mcp-server/tools/definitions/gbif-search-publishers.tool.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"gbif-search-publishers.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/gbif-search-publishers.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAGjD,eAAO,MAAM,oBAAoB;;;;;;;;;;;;;;;;6BAwF/B,CAAC"}
1
+ {"version":3,"file":"gbif-search-publishers.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/gbif-search-publishers.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAmBjD,eAAO,MAAM,oBAAoB;;;;;;;;;;;;;;;;;;EAgG/B,CAAC"}
package/dist/mcp-server/tools/definitions/gbif-search-publishers.tool.js CHANGED
@@ -4,6 +4,17 @@
4
4
  */
5
5
  import { tool, z } from '@cyanheads/mcp-ts-core';
6
6
  import { getGbifService } from '../../../services/gbif/gbif-service.js';
7
+ /** Empty-result and pagination-overshoot guidance. */
8
+ function buildNotice(args) {
9
+ const { totalCount, publisherCount, offset } = args;
10
+ if (totalCount === 0) {
11
+ return 'No publishers matched. Try a shorter name fragment or remove the country filter.';
12
+ }
13
+ if (publisherCount === 0 && offset > 0 && offset >= totalCount) {
14
+ return `Offset ${offset} exceeds totalCount (${totalCount}). Reset offset to 0 or reduce it below ${totalCount} to page through results.`;
15
+ }
16
+ return;
17
+ }
7
18
  export const gbifSearchPublishers = tool('gbif_search_publishers', {
8
19
  title: 'Search Publishers',
9
20
  description: 'Search organizations registered with GBIF by name fragment or country. ' +
@@ -38,11 +49,18 @@ export const gbifSearchPublishers = tool('gbif_search_publishers', {
38
49
  })
39
50
  .describe('A GBIF-registered publishing organization.'))
40
51
  .describe('Matching organizations.'),
52
+ }),
53
+ // Pagination context and recovery guidance — reaches both structuredContent and content[].
54
+ enrichment: {
41
55
  totalCount: z.number().describe('Total matching organizations before pagination.'),
42
56
  offset: z.number().describe('Current pagination offset.'),
43
57
  limit: z.number().describe('Organizations returned in this page.'),
44
58
  endOfRecords: z.boolean().describe('True when there are no more results after this page.'),
45
- }),
59
+ notice: z
60
+ .string()
61
+ .optional()
62
+ .describe('Guidance when results are empty or paging overshot. Absent on successful result pages.'),
63
+ },
46
64
  async handler(input, ctx) {
47
65
  ctx.log.info('Searching publishers', { q: input.q, country: input.country });
48
66
  const raw = await getGbifService().searchPublishers({
@@ -57,18 +75,18 @@ export const gbifSearchPublishers = tool('gbif_search_publishers', {
57
75
  country: r.country,
58
76
  city: r.city,
59
77
  }));
60
- return {
61
- publishers,
62
- totalCount: raw.count ?? 0,
63
- offset: raw.offset ?? input.offset,
64
- limit: raw.limit ?? input.limit,
65
- endOfRecords: raw.endOfRecords ?? true,
66
- };
78
+ const totalCount = raw.count ?? 0;
79
+ const offset = raw.offset ?? input.offset;
80
+ const limit = raw.limit ?? input.limit;
81
+ const endOfRecords = raw.endOfRecords ?? true;
82
+ ctx.enrich({ totalCount, offset, limit, endOfRecords });
83
+ const notice = buildNotice({ totalCount, publisherCount: publishers.length, offset });
84
+ if (notice)
85
+ ctx.enrich.notice(notice);
86
+ return { publishers };
67
87
  },
68
88
  format: (result) => {
69
- const lines = [
70
- `**Total matches:** ${result.totalCount} | **Showing:** ${result.publishers.length} | **Limit:** ${result.limit} | **End of records:** ${result.endOfRecords} (offset ${result.offset})`,
71
- ];
89
+ const lines = [`**Results:** ${result.publishers.length}`];
72
90
  for (const pub of result.publishers) {
73
91
  lines.push(`\n- **${pub.title ?? 'Unknown'}**`);
74
92
  if (pub.key)
@@ -81,9 +99,6 @@ export const gbifSearchPublishers = tool('gbif_search_publishers', {
81
99
  if (location.length > 0)
82
100
  lines.push(` Location: ${location.join(', ')}`);
83
101
  }
84
- if (!result.endOfRecords) {
85
- lines.push(`\n*More results — use offset ${result.offset + result.limit} to continue.*`);
86
- }
87
102
  return [{ type: 'text', text: lines.join('\n') }];
88
103
  },
89
104
  });
package/dist/mcp-server/tools/definitions/gbif-search-publishers.tool.js.map CHANGED
@@ -1 +1 @@
1
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1
+ {"version":3,"file":"gbif-search-publishers.tool.js","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/gbif-search-publishers.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,IAAI,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,cAAc,EAAE,MAAM,iCAAiC,CAAC;AAEjE,sDAAsD;AACtD,SAAS,WAAW,CAAC,IAIpB;IACC,MAAM,EAAE,UAAU,EAAE,cAAc,EAAE,MAAM,EAAE,GAAG,IAAI,CAAC;IACpD,IAAI,UAAU,KAAK,CAAC,EAAE,CAAC;QACrB,OAAO,kFAAkF,CAAC;IAC5F,CAAC;IACD,IAAI,cAAc,KAAK,CAAC,IAAI,MAAM,GAAG,CAAC,IAAI,MAAM,IAAI,UAAU,EAAE,CAAC;QAC/D,OAAO,UAAU,MAAM,wBAAwB,UAAU,2CAA2C,UAAU,2BAA2B,CAAC;IAC5I,CAAC;IACD,OAAO;AACT,CAAC;AAED,MAAM,CAAC,MAAM,oBAAoB,GAAG,IAAI,CAAC,wBAAwB,EAAE;IACjE,KAAK,EAAE,mBAAmB;IAC1B,WAAW,EACT,yEAAyE;QACzE,+FAA+F;QAC/F,oEAAoE;IACtE,WAAW,EAAE,EAAE,YAAY,EAAE,IAAI,EAAE,cAAc,EAAE,IAAI,EAAE,aAAa,EAAE,KAAK,EAAE;IAC/E,KAAK,EAAE,CAAC,CAAC,MAAM,CAAC;QACd,CAAC,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,0DAA0D,CAAC;QAC7F,OAAO,EAAE,CAAC;aACP,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CAAC,qEAAqE,CAAC;QAClF,KAAK,EAAE,CAAC;aACL,MAAM,EAAE;aACR,GAAG,CAAC,CAAC,CAAC;aACN,GAAG,CAAC,IAAI,CAAC;aACT,OAAO,CAAC,EAAE,CAAC;aACX,QAAQ,CAAC,2DAA2D,CAAC;QACxE,MAAM,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,oBAAoB,CAAC;KACpE,CAAC;IACF,MAAM,EAAE,CAAC,CAAC,MAAM,CAAC;QACf,UAAU,EAAE,CAAC;aACV,KAAK,CACJ,CAAC;aACE,MAAM,CAAC;YACN,GAAG,EAAE,CAAC;iBACH,MAAM,EAAE;iBACR,QAAQ,EAAE;iBACV,QAAQ,CAAC,kEAAkE,CAAC;YAC/E,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,oBAAoB,CAAC;YAC3D,OAAO,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,kCAAkC,CAAC;YAC3E,IAAI,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,sBAAsB,CAAC;SAC7D,CAAC;aACD,QAAQ,CAAC,4CAA4C,CAAC,CAC1D;aACA,QAAQ,CAAC,yBAAyB,CAAC;KACvC,CAAC;IAEF,2FAA2F;IAC3F,UAAU,EAAE;QACV,UAAU,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,iDAAiD,CAAC;QAClF,MAAM,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,4BAA4B,CAAC;QACzD,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,sCAAsC,CAAC;QAClE,YAAY,EAAE,CAAC,CAAC,OAAO,EAAE,CAAC,QAAQ,CAAC,sDAAsD,CAAC;QAC1F,MAAM,EAAE,CAAC;aACN,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CACP,wFAAwF,CACzF;KACJ;IAED,KAAK,CAAC,OAAO,CAAC,KAAK,EAAE,GAAG;QACtB,GAAG,CAAC,GAAG,CAAC,IAAI,CAAC,sBAAsB,EAAE,EAAE,CAAC,EAAE,KAAK,CAAC,CAAC,EAAE,OAAO,EAAE,KAAK,CAAC,OAAO,EAAE,CAAC,CAAC;QAC7E,MAAM,GAAG,GAAG,MAAM,cAAc,EAAE,CAAC,gBAAgB,CACjD;YACE,GAAG,CAAC,KAAK,CAAC,CAAC,EAAE,IAAI,EAAE,IAAI,EAAE,CAAC,EAAE,KAAK,CAAC,CAAC,EAAE,CAAC;YACtC,GAAG,CAAC,KAAK,CAAC,OAAO,EAAE,IAAI,EAAE,IAAI,EAAE,OAAO,EAAE,KAAK,CAAC,OAAO,EAAE,CAAC;YACxD,KAAK,EAAE,KAAK,CAAC,KAAK;YAClB,MAAM,EAAE,KAAK,CAAC,MAAM;SACrB,EACD,GAAG,CACJ,CAAC;QAEF,MAAM,UAAU,GAAG,CAAC,GAAG,CAAC,OAAO,IAAI,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC;YACjD,GAAG,EAAE,CAAC,CAAC,GAAG;YACV,KAAK,EAAE,CAAC,CAAC,KAAK;YACd,OAAO,EAAE,CAAC,CAAC,OAAO;YAClB,IAAI,EAAE,CAAC,CAAC,IAAI;SACb,CAAC,CAAC,CAAC;QAEJ,MAAM,UAAU,GAAG,GAAG,CAAC,KAAK,IAAI,CAAC,CAAC;QAClC,MAAM,MAAM,GAAG,GAAG,CAAC,MAAM,IAAI,KAAK,CAAC,MAAM,CAAC;QAC1C,MAAM,KAAK,GAAG,GAAG,CAAC,KAAK,IAAI,KAAK,CAAC,KAAK,CAAC;QACvC,MAAM,YAAY,GAAG,GAAG,CAAC,YAAY,IAAI,IAAI,CAAC;QAE9C,GAAG,CAAC,MAAM,CAAC,EAAE,UAAU,EAAE,MAAM,EAAE,KAAK,EAAE,YAAY,EAAE,CAAC,CAAC;QACxD,MAAM,MAAM,GAAG,WAAW,CAAC,EAAE,UAAU,EAAE,cAAc,EAAE,UAAU,CAAC,MAAM,EAAE,MAAM,EAAE,CAAC,CAAC;QACtF,IAAI,MAAM;YAAE,GAAG,CAAC,MAAM,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;QAEtC,OAAO,EAAE,UAAU,EAAE,CAAC;IACxB,CAAC;IAED,MAAM,EAAE,CAAC,MAAM,EAAE,EAAE;QACjB,MAAM,KAAK,GAAa,CAAC,gBAAgB,MAAM,CAAC,UAAU,CAAC,MAAM,EAAE,CAAC,CAAC;QACrE,KAAK,MAAM,GAAG,IAAI,MAAM,CAAC,UAAU,EAAE,CAAC;YACpC,KAAK,CAAC,IAAI,CAAC,SAAS,GAAG,CAAC,KAAK,IAAI,SAAS,IAAI,CAAC,CAAC;YAChD,IAAI,GAAG,CAAC,GAAG;gBAAE,KAAK,CAAC,IAAI,CAAC,UAAU,GAAG,CAAC,GAAG,EAAE,CAAC,CAAC;YAC7C,MAAM,QAAQ,GAAa,EAAE,CAAC;YAC9B,IAAI,GAAG,CAAC,IAAI;gBAAE,QAAQ,CAAC,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;YACtC,IAAI,GAAG,CAAC,OAAO;gBAAE,QAAQ,CAAC,IAAI,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;YAC5C,IAAI,QAAQ,CAAC,MAAM,GAAG,CAAC;gBAAE,KAAK,CAAC,IAAI,CAAC,eAAe,QAAQ,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAC5E,CAAC;QACD,OAAO,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACpD,CAAC;CACF,CAAC,CAAC"}
package/dist/mcp-server/tools/definitions/gbif-search-species.tool.d.ts CHANGED
@@ -40,9 +40,11 @@ export declare const gbifSearchSpecies: import("@cyanheads/mcp-ts-core").ToolDef
40
40
  numDescendants: z.ZodOptional<z.ZodNumber>;
41
41
  extinct: z.ZodOptional<z.ZodBoolean>;
42
42
  }, z.core.$strip>>;
43
- totalCount: z.ZodNumber;
44
- offset: z.ZodNumber;
45
- limit: z.ZodNumber;
46
- endOfRecords: z.ZodBoolean;
47
- }, z.core.$strip>, undefined>;
43
+ }, z.core.$strip>, undefined, {
44
+ readonly totalCount: z.ZodNumber;
45
+ readonly offset: z.ZodNumber;
46
+ readonly limit: z.ZodNumber;
47
+ readonly endOfRecords: z.ZodBoolean;
48
+ readonly notice: z.ZodOptional<z.ZodString>;
49
+ }>;
48
50
  //# sourceMappingURL=gbif-search-species.tool.d.ts.map
package/dist/mcp-server/tools/definitions/gbif-search-species.tool.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"gbif-search-species.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/gbif-search-species.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAGjD,eAAO,MAAM,iBAAiB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;6BA8I5B,CAAC"}
1
+ {"version":3,"file":"gbif-search-species.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/gbif-search-species.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAmBjD,eAAO,MAAM,iBAAiB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EAoJ5B,CAAC"}
package/dist/mcp-server/tools/definitions/gbif-search-species.tool.js CHANGED
@@ -4,6 +4,17 @@
4
4
  */
5
5
  import { tool, z } from '@cyanheads/mcp-ts-core';
6
6
  import { getGbifService } from '../../../services/gbif/gbif-service.js';
7
+ /** Empty-result and pagination-overshoot guidance. */
8
+ function buildNotice(args) {
9
+ const { totalCount, taxaCount, offset } = args;
10
+ if (totalCount === 0) {
11
+ return 'No taxa matched the query. Try a shorter name fragment, remove rank/kingdom filters, or use gbif_match_species for exact name lookup.';
12
+ }
13
+ if (taxaCount === 0 && offset > 0 && offset >= totalCount) {
14
+ return `Offset ${offset} exceeds totalCount (${totalCount}). Reset offset to 0 or reduce it below ${totalCount} to page through results.`;
15
+ }
16
+ return;
17
+ }
7
18
  export const gbifSearchSpecies = tool('gbif_search_species', {
8
19
  title: 'Search Species Taxonomy',
9
20
  description: 'Search or browse the GBIF backbone taxonomy. Accepts scientific name fragments, rank filters, ' +
@@ -61,11 +72,18 @@ export const gbifSearchSpecies = tool('gbif_search_species', {
61
72
  })
62
73
  .describe('A backbone taxon with classification, status, and occurrence counts.'))
63
74
  .describe('Matching taxa.'),
75
+ }),
76
+ // Pagination context and recovery guidance — reaches both structuredContent and content[].
77
+ enrichment: {
64
78
  totalCount: z.number().describe('Total matches before pagination.'),
65
79
  offset: z.number().describe('Current pagination offset.'),
66
80
  limit: z.number().describe('Records returned in this page.'),
67
81
  endOfRecords: z.boolean().describe('True when there are no more results after this page.'),
68
- }),
82
+ notice: z
83
+ .string()
84
+ .optional()
85
+ .describe('Guidance when results are empty or paging overshot. Absent on successful result pages.'),
86
+ },
69
87
  async handler(input, ctx) {
70
88
  ctx.log.info('Searching species taxonomy', { q: input.q, rank: input.rank });
71
89
  const raw = await getGbifService().searchSpecies({
@@ -96,18 +114,18 @@ export const gbifSearchSpecies = tool('gbif_search_species', {
96
114
  numDescendants: r.numDescendants,
97
115
  ...(typeof r.extinct === 'boolean' && { extinct: r.extinct }),
98
116
  }));
99
- return {
100
- taxa,
101
- totalCount: raw.count ?? 0,
102
- offset: raw.offset ?? input.offset,
103
- limit: raw.limit ?? input.limit,
104
- endOfRecords: raw.endOfRecords ?? true,
105
- };
117
+ const totalCount = raw.count ?? 0;
118
+ const offset = raw.offset ?? input.offset;
119
+ const limit = raw.limit ?? input.limit;
120
+ const endOfRecords = raw.endOfRecords ?? true;
121
+ ctx.enrich({ totalCount, offset, limit, endOfRecords });
122
+ const notice = buildNotice({ totalCount, taxaCount: taxa.length, offset });
123
+ if (notice)
124
+ ctx.enrich.notice(notice);
125
+ return { taxa };
106
126
  },
107
127
  format: (result) => {
108
- const lines = [
109
- `**Total matches:** ${result.totalCount} | **Showing:** ${result.taxa.length} | **Limit:** ${result.limit} | **End of records:** ${result.endOfRecords} (offset ${result.offset})`,
110
- ];
128
+ const lines = [`**Results:** ${result.taxa.length}`];
111
129
  for (const t of result.taxa) {
112
130
  const name = t.canonicalName ?? 'Unknown';
113
131
  const sci = t.scientificName && t.scientificName !== name ? ` [${t.scientificName}]` : '';
@@ -142,9 +160,6 @@ export const gbifSearchSpecies = tool('gbif_search_species', {
142
160
  if (typeof t.extinct === 'boolean')
143
161
  lines.push(`**Extinct:** ${t.extinct ? 'Yes' : 'No'}`);
144
162
  }
145
- if (!result.endOfRecords) {
146
- lines.push(`\n*More results available — use offset ${result.offset + result.limit} to continue.*`);
147
- }
148
163
  return [{ type: 'text', text: lines.join('\n') }];
149
164
  },
150
165
  });
package/dist/mcp-server/tools/definitions/gbif-search-species.tool.js.map CHANGED
@@ -1 +1 @@
1
- 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1
+ {"version":3,"file":"gbif-search-species.tool.js","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/gbif-search-species.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,IAAI,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,cAAc,EAAE,MAAM,iCAAiC,CAAC;AAEjE,sDAAsD;AACtD,SAAS,WAAW,CAAC,IAIpB;IACC,MAAM,EAAE,UAAU,EAAE,SAAS,EAAE,MAAM,EAAE,GAAG,IAAI,CAAC;IAC/C,IAAI,UAAU,KAAK,CAAC,EAAE,CAAC;QACrB,OAAO,uIAAuI,CAAC;IACjJ,CAAC;IACD,IAAI,SAAS,KAAK,CAAC,IAAI,MAAM,GAAG,CAAC,IAAI,MAAM,IAAI,UAAU,EAAE,CAAC;QAC1D,OAAO,UAAU,MAAM,wBAAwB,UAAU,2CAA2C,UAAU,2BAA2B,CAAC;IAC5I,CAAC;IACD,OAAO;AACT,CAAC;AAED,MAAM,CAAC,MAAM,iBAAiB,GAAG,IAAI,CAAC,qBAAqB,EAAE;IAC3D,KAAK,EAAE,yBAAyB;IAChC,WAAW,EACT,gGAAgG;QAChG,6FAA6F;QAC7F,wFAAwF;QACxF,2GAA2G;IAC7G,WAAW,EAAE,EAAE,YAAY,EAAE,IAAI,EAAE,cAAc,EAAE,IAAI,EAAE,aAAa,EAAE,KAAK,EAAE;IAC/E,KAAK,EAAE,CAAC,CAAC,MAAM,CAAC;QACd,CAAC,EAAE,CAAC;aACD,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CAAC,uEAAuE,CAAC;QACpF,IAAI,EAAE,CAAC;aACJ,IAAI,CAAC,CAAC,SAAS,EAAE,QAAQ,EAAE,OAAO,EAAE,OAAO,EAAE,QAAQ,EAAE,OAAO,EAAE,SAAS,EAAE,YAAY,CAAC,CAAC;aACzF,QAAQ,EAAE;aACV,QAAQ,CAAC,sCAAsC,CAAC;QACnD,OAAO,EAAE,CAAC;aACP,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CAAC,0DAA0D,CAAC;QACvE,MAAM,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,gCAAgC,CAAC;QACxE,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,+BAA+B,CAAC;QACtE,SAAS,EAAE,CAAC,CAAC,OAAO,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,kDAAkD,CAAC;QAC9F,UAAU,EAAE,CAAC;aACV,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CAAC,+EAA+E,CAAC;QAC5F,KAAK,EAAE,CAAC;aACL,MAAM,EAAE;aACR,GAAG,CAAC,CAAC,CAAC;aACN,GAAG,CAAC,IAAI,CAAC;aACT,OAAO,CAAC,EAAE,CAAC;aACX,QAAQ,CAAC,qDAAqD,CAAC;QAClE,MAAM,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,oBAAoB,CAAC;KACpE,CAAC;IACF,MAAM,EAAE,CAAC,CAAC,MAAM,CAAC;QACf,IAAI,EAAE,CAAC;aACJ,KAAK,CACJ,CAAC;aACE,MAAM,CAAC;YACN,GAAG,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,0BAA0B,CAAC;YAC/D,cAAc,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,uCAAuC,CAAC;YACvF,aAAa,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,qCAAqC,CAAC;YACpF,IAAI,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,iBAAiB,CAAC;YACvD,eAAe,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,mCAAmC,CAAC;YACpF,OAAO,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,yBAAyB,CAAC;YAClE,MAAM,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,wBAAwB,CAAC;YAChE,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,uBAAuB,CAAC;YAC9D,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,uBAAuB,CAAC;YAC9D,MAAM,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,wBAAwB,CAAC;YAChE,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,uBAAuB,CAAC;YAC9D,cAAc,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,6BAA6B,CAAC;YAC7E,cAAc,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,kCAAkC,CAAC;YAClF,cAAc,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,sCAAsC,CAAC;YACtF,OAAO,EAAE,CAAC,CAAC,OAAO,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,0CAA0C,CAAC;SACrF,CAAC;aACD,QAAQ,CAAC,sEAAsE,CAAC,CACpF;aACA,QAAQ,CAAC,gBAAgB,CAAC;KAC9B,CAAC;IAEF,2FAA2F;IAC3F,UAAU,EAAE;QACV,UAAU,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,kCAAkC,CAAC;QACnE,MAAM,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,4BAA4B,CAAC;QACzD,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,gCAAgC,CAAC;QAC5D,YAAY,EAAE,CAAC,CAAC,OAAO,EAAE,CAAC,QAAQ,CAAC,sDAAsD,CAAC;QAC1F,MAAM,EAAE,CAAC;aACN,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CACP,wFAAwF,CACzF;KACJ;IAED,KAAK,CAAC,OAAO,CAAC,KAAK,EAAE,GAAG;QACtB,GAAG,CAAC,GAAG,CAAC,IAAI,CAAC,4BAA4B,EAAE,EAAE,CAAC,EAAE,KAAK,CAAC,CAAC,EAAE,IAAI,EAAE,KAAK,CAAC,IAAI,EAAE,CAAC,CAAC;QAC7E,MAAM,GAAG,GAAG,MAAM,cAAc,EAAE,CAAC,aAAa,CAC9C;YACE,GAAG,CAAC,KAAK,CAAC,CAAC,EAAE,IAAI,EAAE,IAAI,EAAE,CAAC,EAAE,KAAK,CAAC,CAAC,EAAE,CAAC;YACtC,GAAG,CAAC,KAAK,CAAC,IAAI,IAAI,EAAE,IAAI,EAAE,KAAK,CAAC,IAAI,EAAE,CAAC;YACvC,GAAG,CAAC,KAAK,CAAC,OAAO,EAAE,IAAI,EAAE,IAAI,EAAE,OAAO,EAAE,KAAK,CAAC,OAAO,EAAE,CAAC;YACxD,GAAG,CAAC,KAAK,CAAC,MAAM,EAAE,IAAI,EAAE,IAAI,EAAE,MAAM,EAAE,KAAK,CAAC,MAAM,EAAE,CAAC;YACrD,GAAG,CAAC,KAAK,CAAC,KAAK,EAAE,IAAI,EAAE,IAAI,EAAE,KAAK,EAAE,KAAK,CAAC,KAAK,EAAE,CAAC;YAClD,GAAG,CAAC,KAAK,CAAC,SAAS,KAAK,SAAS,IAAI,EAAE,SAAS,EAAE,KAAK,CAAC,SAAS,EAAE,CAAC;YACpE,GAAG,CAAC,KAAK,CAAC,UAAU,EAAE,IAAI,EAAE,IAAI,EAAE,UAAU,EAAE,KAAK,CAAC,UAAU,EAAE,CAAC;YACjE,KAAK,EAAE,KAAK,CAAC,KAAK;YAClB,MAAM,EAAE,KAAK,CAAC,MAAM;SACrB,EACD,GAAG,CACJ,CAAC;QAEF,MAAM,IAAI,GAAG,CAAC,GAAG,CAAC,OAAO,IAAI,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC;YAC3C,GAAG,EAAE,CAAC,CAAC,GAAG;YACV,cAAc,EAAE,CAAC,CAAC,cAAc;YAChC,aAAa,EAAE,CAAC,CAAC,aAAa;YAC9B,IAAI,EAAE,CAAC,CAAC,IAAI;YACZ,eAAe,EAAE,CAAC,CAAC,eAAe;YAClC,OAAO,EAAE,CAAC,CAAC,OAAO;YAClB,MAAM,EAAE,CAAC,CAAC,MAAM;YAChB,KAAK,EAAE,CAAC,CAAC,KAAK;YACd,KAAK,EAAE,CAAC,CAAC,KAAK;YACd,MAAM,EAAE,CAAC,CAAC,MAAM;YAChB,KAAK,EAAE,CAAC,CAAC,KAAK;YACd,cAAc,EAAE,CAAC,CAAC,cAAc;YAChC,cAAc,EAAE,CAAC,CAAC,cAAc;YAChC,cAAc,EAAE,CAAC,CAAC,cAAc;YAChC,GAAG,CAAC,OAAO,CAAC,CAAC,OAAO,KAAK,SAAS,IAAI,EAAE,OAAO,EAAE,CAAC,CAAC,OA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package/dist/services/gbif/gbif-service.d.ts CHANGED
@@ -1,5 +1,5 @@
1
1
  /**
2
- * @fileoverview GBIF API v1 service — wraps api.gbif.org/v1 with retry, auth, and response parsing.
2
+ * @fileoverview GBIF API v1 service — wraps api.gbif.org/v1 with retry and response parsing.
3
3
  * @module services/gbif/gbif-service
4
4
  */
5
5
  import type { Context } from '@cyanheads/mcp-ts-core';
@@ -9,13 +9,10 @@ import type { BasisOfRecord, RawChildrenResponse, RawDatasetRecord, RawDatasetSe
9
9
  export declare class GbifService {
10
10
  private readonly baseUrl;
11
11
  private readonly timeoutMs;
12
- private readonly authHeader;
13
12
  constructor(_config: AppConfig, _storage: StorageService, opts: {
14
13
  baseUrl: string;
15
14
  timeoutMs: number;
16
- apiKey?: string;
17
15
  });
18
- private buildHeaders;
19
16
  private buildUrl;
20
17
  private getJson;
21
18
  matchSpecies(params: {
@@ -94,7 +91,6 @@ export declare class GbifService {
94
91
  export declare function initGbifService(config: AppConfig, storage: StorageService, opts: {
95
92
  baseUrl: string;
96
93
  timeoutMs: number;
97
- apiKey?: string;
98
94
  }): void;
99
95
  export declare function getGbifService(): GbifService;
100
96
  //# sourceMappingURL=gbif-service.d.ts.map
package/dist/services/gbif/gbif-service.d.ts.map CHANGED
@@ -1 +1 @@
1
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1
+ {"version":3,"file":"gbif-service.d.ts","sourceRoot":"","sources":["../../../src/services/gbif/gbif-service.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,wBAAwB,CAAC;AACtD,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,+BAA+B,CAAC;AAE/D,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,gCAAgC,CAAC;AAErE,OAAO,KAAK,EACV,aAAa,EACb,mBAAmB,EACnB,gBAAgB,EAChB,wBAAwB,EACxB,mBAAmB,EACnB,2BAA2B,EAC3B,6BAA6B,EAC7B,aAAa,EACb,eAAe,EACf,gBAAgB,EAChB,wBAAwB,EACzB,MAAM,YAAY,CAAC;AAIpB,qBAAa,WAAW;IACtB,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAS;IACjC,OAAO,CAAC,QAAQ,CAAC,SAAS,CAAS;gBAGjC,OAAO,EAAE,SAAS,EAClB,QAAQ,EAAE,cAAc,EACxB,IAAI,EAAE;QAAE,OAAO,EAAE,MAAM,CAAC;QAAC,SAAS,EAAE,MAAM,CAAA;KAAE;IAQ9C,OAAO,CAAC,QAAQ;IAahB,OAAO,CAAC,OAAO;IAsCf,YAAY,CACV,MAAM,EAAE;QACN,IAAI,EAAE,MAAM,CAAC;QACb,MAAM,CAAC,EAAE,OAAO,CAAC;QACjB,OAAO,CAAC,EAAE,MAAM,CAAC;QACjB,IAAI,CAAC,EAAE,MAAM,CAAC;KACf,EACD,GAAG,EAAE,OAAO,GACX,OAAO,CAAC,eAAe,CAAC;IAU3B,UAAU,CAAC,QAAQ,EAAE,MAAM,EAAE,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,gBAAgB,CAAC;IAMrE,aAAa,CACX,MAAM,EAAE;QACN,CAAC,CAAC,EAAE,MAAM,CAAC;QACX,IAAI,CAAC,EAAE,MAAM,CAAC;QACd,OAAO,CAAC,EAAE,MAAM,CAAC;QACjB,MAAM,CAAC,EAAE,MAAM,CAAC;QAChB,KAAK,CAAC,EAAE,MAAM,CAAC;QACf,SAAS,CAAC,EAAE,OAAO,CAAC;QACpB,UAAU,CAAC,EAAE,MAAM,CAAC;QACpB,KAAK,CAAC,EAAE,MAAM,CAAC;QACf,MAAM,CAAC,EAAE,MAAM,CAAC;KACjB,EACD,GAAG,EAAE,OAAO,GACX,OAAO,CAAC,wBAAwB,CAAC;IAgBpC,iBAAiB,CAAC,QAAQ,EAAE,MAAM,EAAE,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,aAAa,EAAE,CAAC;IAM3E,kBAAkB,CAChB,QAAQ,EAAE,MAAM,EAChB,MAAM,EAAE;QAAE,KAAK,CAAC,EAAE,MAAM,CAAC;QAAC,MAAM,CAAC,EAAE,MAAM,CAAA;KAAE,EAC3C,GAAG,EAAE,OAAO,GACX,OAAO,CAAC,mBAAmB,CAAC;IAW/B,iBAAiB,CACf,MAAM,EAAE;QACN,QAAQ,CAAC,EAAE,MAAM,CAAC;QAClB,cAAc,CAAC,EAAE,MAAM,CAAC;QACxB,OAAO,CAAC,EAAE,MAAM,CAAC;QACjB,eAAe,CAAC,EAAE,MAAM,CAAC;QACzB,gBAAgB,CAAC,EAAE,MAAM,CAAC;QAC1B,QAAQ,CAAC,EAAE,MAAM,CAAC;QAClB,IAAI,CAAC,EAAE,MAAM,CAAC;QACd,KAAK,CAAC,EAAE,MAAM,CAAC;QACf,aAAa,CAAC,EAAE,aAAa,CAAC;QAC9B,aAAa,CAAC,EAAE,OAAO,CAAC;QACxB,WAAW,CAAC,EAAE,OAAO,CAAC;QACtB,6BAA6B,CAAC,EAAE,MAAM,CAAC;QACvC,UAAU,CAAC,EAAE,MAAM,CAAC;QACpB,KAAK,CAAC,EAAE,MAAM,CAAC;QACf,MAAM,CAAC,EAAE,MAAM,CAAC;KACjB,EACD,GAAG,EAAE,OAAO,GACX,OAAO,CAAC,2BAA2B,CAAC;IAuBvC,gBAAgB,CACd,MAAM,EAAE;QACN,QAAQ,CAAC,EAAE,MAAM,CAAC;QAClB,OAAO,CAAC,EAAE,MAAM,CAAC;QACjB,eAAe,CAAC,EAAE,OAAO,CAAC;QAC1B,UAAU,CAAC,EAAE,MAAM,CAAC;QACpB,IAAI,CAAC,EAAE,MAAM,CAAC;KACf,EACD,GAAG,EAAE,OAAO,GACX,OAAO,CAAC,MAAM,CAAC;IAYlB,aAAa,CAAC,aAAa,EAAE,MAAM,EAAE,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,mBAAmB,CAAC;IAMhF,mBAAmB,CACjB,MAAM,EAAE;QACN,QAAQ,CAAC,EAAE,MAAM,CAAC;QAClB,OAAO,CAAC,EAAE,MAAM,CAAC;QACjB,IAAI,CAAC,EAAE,MAAM,CAAC;QACd,aAAa,CAAC,EAAE,aAAa,CAAC;QAC9B,QAAQ,CAAC,EAAE,MAAM,CAAC;QAClB,KAAK,EAAE,MAAM,CAAC;QACd,UAAU,CAAC,EAAE,MAAM,CAAC;KACrB,EACD,GAAG,EAAE,OAAO,GACX,OAAO,CAAC,2BAA2B,CAAC;IAevC,cAAc,CACZ,MAAM,EAAE;QACN,CAAC,CAAC,EAAE,MAAM,CAAC;QACX,IAAI,CAAC,EAAE,MAAM,CAAC;QACd,iBAAiB,CAAC,EAAE,MAAM,CAAC;QAC3B,UAAU,CAAC,EAAE,MAAM,CAAC;QACpB,KAAK,CAAC,EAAE,MAAM,CAAC;QACf,MAAM,CAAC,EAAE,MAAM,CAAC;KACjB,EACD,GAAG,EAAE,OAAO,GACX,OAAO,CAAC,wBAAwB,CAAC;IAapC,UAAU,CAAC,UAAU,EAAE,MAAM,EAAE,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,gBAAgB,CAAC;IAQvE,gBAAgB,CACd,MAAM,EAAE;QACN,CAAC,CAAC,EAAE,MAAM,CAAC;QACX,OAAO,CAAC,EAAE,MAAM,CAAC;QACjB,KAAK,CAAC,EAAE,MAAM,CAAC;QACf,MAAM,CAAC,EAAE,MAAM,CAAC;KACjB,EACD,GAAG,EAAE,OAAO,GACX,OAAO,CAAC,6BAA6B,CAAC;CAU1C;AAMD,wBAAgB,eAAe,CAC7B,MAAM,EAAE,SAAS,EACjB,OAAO,EAAE,cAAc,EACvB,IAAI,EAAE;IAAE,OAAO,EAAE,MAAM,CAAC;IAAC,SAAS,EAAE,MAAM,CAAA;CAAE,GAC3C,IAAI,CAEN;AAED,wBAAgB,cAAc,IAAI,WAAW,CAK5C"}
package/dist/services/gbif/gbif-service.js CHANGED
@@ -1,5 +1,5 @@
1
1
  /**
2
- * @fileoverview GBIF API v1 service — wraps api.gbif.org/v1 with retry, auth, and response parsing.
2
+ * @fileoverview GBIF API v1 service — wraps api.gbif.org/v1 with retry and response parsing.
3
3
  * @module services/gbif/gbif-service
4
4
  */
5
5
  import { serviceUnavailable } from '@cyanheads/mcp-ts-core/errors';
@@ -8,22 +8,11 @@ import { httpErrorFromResponse, withRetry } from '@cyanheads/mcp-ts-core/utils';
8
8
  export class GbifService {
9
9
  baseUrl;
10
10
  timeoutMs;
11
- authHeader;
12
11
  constructor(_config, _storage, opts) {
13
12
  this.baseUrl = opts.baseUrl.replace(/\/$/, '');
14
13
  this.timeoutMs = opts.timeoutMs;
15
- if (opts.apiKey) {
16
- // GBIF auth: Basic base64(apiKey + ':')
17
- this.authHeader = `Basic ${btoa(`${opts.apiKey}:`)}`;
18
- }
19
14
  }
20
15
  // ─── Private helpers ─────────────────────────────────────────────────────────
21
- buildHeaders() {
22
- const headers = { Accept: 'application/json' };
23
- if (this.authHeader)
24
- headers.Authorization = this.authHeader;
25
- return headers;
26
- }
27
16
  buildUrl(path, params = {}) {
28
17
  const url = new URL(`${this.baseUrl}${path}`);
29
18
  for (const [key, value] of Object.entries(params)) {
@@ -48,7 +37,7 @@ export class GbifService {
48
37
  ctx.signal.addEventListener('abort', onAbort, { once: true });
49
38
  try {
50
39
  const response = await fetch(url, {
51
- headers: this.buildHeaders(),
40
+ headers: { Accept: 'application/json' },
52
41
  signal: controller.signal,
53
42
  });
54
43
  if (!response.ok) {
package/dist/services/gbif/gbif-service.js.map CHANGED
@@ -1 +1 @@
1
- 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package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@cyanheads/gbif-biodiversity-mcp-server",
3
- "version": "0.2.2",
3
+ "version": "0.2.4",
4
4
  "mcpName": "io.github.cyanheads/gbif-biodiversity-mcp-server",
5
5
  "description": "Search GBIF species taxonomy, occurrence records, datasets, and publishers via MCP. STDIO or Streamable HTTP.",
6
6
  "type": "module",
@@ -75,7 +75,7 @@
75
75
  "access": "public"
76
76
  },
77
77
  "dependencies": {
78
- "@cyanheads/mcp-ts-core": "^0.9.13",
78
+ "@cyanheads/mcp-ts-core": "^0.9.16",
79
79
  "pino-pretty": "^13.1.3",
80
80
  "zod": "^4.4.3"
81
81
  },
package/server.json CHANGED
@@ -12,14 +12,14 @@
12
12
  "url": "https://gbif-biodiversity.caseyjhand.com/mcp"
13
13
  }
14
14
  ],
15
- "version": "0.2.2",
15
+ "version": "0.2.4",
16
16
  "packages": [
17
17
  {
18
18
  "registryType": "npm",
19
19
  "registryBaseUrl": "https://registry.npmjs.org",
20
20
  "identifier": "@cyanheads/gbif-biodiversity-mcp-server",
21
21
  "runtimeHint": "bun",
22
- "version": "0.2.2",
22
+ "version": "0.2.4",
23
23
  "packageArguments": [
24
24
  {
25
25
  "type": "positional",
@@ -31,12 +31,6 @@
31
31
  }
32
32
  ],
33
33
  "environmentVariables": [
34
- {
35
- "name": "GBIF_API_KEY",
36
- "description": "GBIF API key for higher rate limits. Sent as HTTP Basic Auth username.",
37
- "format": "string",
38
- "isRequired": false
39
- },
40
34
  {
41
35
  "name": "MCP_LOG_LEVEL",
42
36
  "description": "Sets the minimum log level for output (e.g., 'debug', 'info', 'warn').",
@@ -54,7 +48,7 @@
54
48
  "registryBaseUrl": "https://registry.npmjs.org",
55
49
  "identifier": "@cyanheads/gbif-biodiversity-mcp-server",
56
50
  "runtimeHint": "bun",
57
- "version": "0.2.2",
51
+ "version": "0.2.4",
58
52
  "packageArguments": [
59
53
  {
60
54
  "type": "positional",
@@ -66,12 +60,6 @@
66
60
  }
67
61
  ],
68
62
  "environmentVariables": [
69
- {
70
- "name": "GBIF_API_KEY",
71
- "description": "GBIF API key for higher rate limits. Sent as HTTP Basic Auth username.",
72
- "format": "string",
73
- "isRequired": false
74
- },
75
63
  {
76
64
  "name": "MCP_HTTP_HOST",
77
65
  "description": "The hostname for the HTTP server.",