@cyanheads/ensembl-mcp-server 0.4.0 → 0.4.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/AGENTS.md +2 -2
- package/CLAUDE.md +2 -2
- package/Dockerfile +10 -6
- package/LICENSE +1 -1
- package/README.md +2 -2
- package/changelog/0.4.x/0.4.1.md +30 -0
- package/changelog/0.4.x/0.4.2.md +19 -0
- package/changelog/template.md +5 -3
- package/dist/mcp-server/resources/definitions/gene.resource.d.ts.map +1 -1
- package/dist/mcp-server/resources/definitions/gene.resource.js +3 -1
- package/dist/mcp-server/resources/definitions/gene.resource.js.map +1 -1
- package/dist/mcp-server/resources/definitions/transcript.resource.d.ts.map +1 -1
- package/dist/mcp-server/resources/definitions/transcript.resource.js +3 -1
- package/dist/mcp-server/resources/definitions/transcript.resource.js.map +1 -1
- package/dist/mcp-server/tools/definitions/get-homology.tool.d.ts +4 -0
- package/dist/mcp-server/tools/definitions/get-homology.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/get-homology.tool.js +52 -12
- package/dist/mcp-server/tools/definitions/get-homology.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/get-sequence.tool.d.ts +5 -0
- package/dist/mcp-server/tools/definitions/get-sequence.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/get-sequence.tool.js +42 -24
- package/dist/mcp-server/tools/definitions/get-sequence.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/get-xrefs.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/get-xrefs.tool.js +3 -1
- package/dist/mcp-server/tools/definitions/get-xrefs.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/lookup-gene.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/lookup-gene.tool.js +13 -5
- package/dist/mcp-server/tools/definitions/lookup-gene.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/predict-variant.tool.d.ts +8 -0
- package/dist/mcp-server/tools/definitions/predict-variant.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/predict-variant.tool.js +138 -16
- package/dist/mcp-server/tools/definitions/predict-variant.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/query-region.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/query-region.tool.js +6 -2
- package/dist/mcp-server/tools/definitions/query-region.tool.js.map +1 -1
- package/dist/services/ensembl/ensembl-service.d.ts +1 -1
- package/dist/services/ensembl/ensembl-service.d.ts.map +1 -1
- package/dist/services/ensembl/ensembl-service.js +11 -2
- package/dist/services/ensembl/ensembl-service.js.map +1 -1
- package/package.json +9 -7
- package/server.json +3 -3
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|
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1
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|
package/package.json
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@cyanheads/ensembl-mcp-server",
|
|
3
|
-
"version": "0.4.
|
|
3
|
+
"version": "0.4.2",
|
|
4
4
|
"mcpName": "io.github.cyanheads/ensembl-mcp-server",
|
|
5
5
|
"description": "Look up genes, fetch sequences, predict variant consequences, find orthologs and cross-database xrefs via Ensembl REST via MCP. STDIO or Streamable HTTP.",
|
|
6
6
|
"type": "module",
|
|
@@ -69,7 +69,7 @@
|
|
|
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69
|
"url": "https://github.com/cyanheads/ensembl-mcp-server/issues"
|
|
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70
|
},
|
|
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71
|
"homepage": "https://github.com/cyanheads/ensembl-mcp-server#readme",
|
|
72
|
-
"author": "
|
|
72
|
+
"author": "Casey Hand <casey@caseyjhand.com> (https://caseyjhand.com)",
|
|
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73
|
"funding": [
|
|
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|
{
|
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|
"type": "github",
|
|
@@ -81,7 +81,7 @@
|
|
|
81
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|
}
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|
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|
],
|
|
83
83
|
"license": "Apache-2.0",
|
|
84
|
-
"packageManager": "bun@1.3.
|
|
84
|
+
"packageManager": "bun@1.3.14",
|
|
85
85
|
"engines": {
|
|
86
86
|
"bun": ">=1.3.0",
|
|
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"node": ">=24.0.0"
|
|
@@ -90,17 +90,19 @@
|
|
|
90
90
|
"access": "public"
|
|
91
91
|
},
|
|
92
92
|
"dependencies": {
|
|
93
|
-
"@cyanheads/mcp-ts-core": "^0.10.
|
|
93
|
+
"@cyanheads/mcp-ts-core": "^0.10.14",
|
|
94
94
|
"pino-pretty": "^13.1.3",
|
|
95
95
|
"zod": "^4.4.3"
|
|
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},
|
|
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|
"devDependencies": {
|
|
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98
|
"@biomejs/biome": "^2.5.0",
|
|
99
|
+
"@socketsecurity/bun-security-scanner": "^1.1.2",
|
|
99
100
|
"@types/node": "^26.0.0",
|
|
100
101
|
"depcheck": "^1.4.7",
|
|
101
102
|
"ignore": "^7.0.5",
|
|
102
|
-
"tsc-alias": "^1.
|
|
103
|
+
"tsc-alias": "^1.9.0",
|
|
103
104
|
"typescript": "^6.0.3",
|
|
104
|
-
"vitest": "^4.1.
|
|
105
|
-
}
|
|
105
|
+
"vitest": "^4.1.10"
|
|
106
|
+
},
|
|
107
|
+
"trustedDependencies": ["@socketsecurity/bun-security-scanner"]
|
|
106
108
|
}
|
package/server.json
CHANGED
|
@@ -6,7 +6,7 @@
|
|
|
6
6
|
"url": "https://github.com/cyanheads/ensembl-mcp-server",
|
|
7
7
|
"source": "github"
|
|
8
8
|
},
|
|
9
|
-
"version": "0.4.
|
|
9
|
+
"version": "0.4.2",
|
|
10
10
|
"remotes": [
|
|
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11
|
{
|
|
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12
|
"type": "streamable-http",
|
|
@@ -19,7 +19,7 @@
|
|
|
19
19
|
"registryBaseUrl": "https://registry.npmjs.org",
|
|
20
20
|
"identifier": "@cyanheads/ensembl-mcp-server",
|
|
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21
|
"runtimeHint": "bun",
|
|
22
|
-
"version": "0.4.
|
|
22
|
+
"version": "0.4.2",
|
|
23
23
|
"packageArguments": [
|
|
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|
{
|
|
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25
|
"type": "positional",
|
|
@@ -55,7 +55,7 @@
|
|
|
55
55
|
"registryBaseUrl": "https://registry.npmjs.org",
|
|
56
56
|
"identifier": "@cyanheads/ensembl-mcp-server",
|
|
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|
"runtimeHint": "bun",
|
|
58
|
-
"version": "0.4.
|
|
58
|
+
"version": "0.4.2",
|
|
59
59
|
"packageArguments": [
|
|
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|
{
|
|
61
61
|
"type": "positional",
|