@cyanheads/ensembl-mcp-server 0.4.0 → 0.4.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
package/AGENTS.md CHANGED
@@ -1,8 +1,8 @@
1
1
  # Developer Protocol
2
2
 
3
3
  **Server:** ensembl-mcp-server
4
- **Version:** 0.4.0
5
- **Framework:** [@cyanheads/mcp-ts-core](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) `^0.10.10`
4
+ **Version:** 0.4.1
5
+ **Framework:** [@cyanheads/mcp-ts-core](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) `^0.10.14`
6
6
  **Engines:** Bun ≥1.3.0, Node ≥24.0.0
7
7
  **MCP SDK:** `@modelcontextprotocol/sdk` ^1.29.0
8
8
  **Zod:** ^4.4.3
package/CLAUDE.md CHANGED
@@ -1,8 +1,8 @@
1
1
  # Developer Protocol
2
2
 
3
3
  **Server:** ensembl-mcp-server
4
- **Version:** 0.4.0
5
- **Framework:** [@cyanheads/mcp-ts-core](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) `^0.10.10`
4
+ **Version:** 0.4.1
5
+ **Framework:** [@cyanheads/mcp-ts-core](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) `^0.10.14`
6
6
  **Engines:** Bun ≥1.3.0, Node ≥24.0.0
7
7
  **MCP SDK:** `@modelcontextprotocol/sdk` ^1.29.0
8
8
  **Zod:** ^4.4.3
package/Dockerfile CHANGED
@@ -4,15 +4,17 @@
4
4
  # This stage installs all dependencies (including dev), builds the TypeScript
5
5
  # source code into JavaScript, and prepares the production assets.
6
6
  # ==============================================================================
7
- FROM oven/bun:1.3 AS build
7
+ FROM oven/bun:1.3.14 AS build
8
8
 
9
9
  WORKDIR /usr/src/app
10
10
 
11
11
  # Copy dependency manifests for optimized layer caching
12
12
  COPY package.json bun.lock ./
13
13
 
14
- # Install all dependencies (including dev dependencies for building)
15
- RUN bun install --frozen-lockfile
14
+ # Install all dependencies (including dev dependencies for building).
15
+ # The BuildKit cache mount persists Bun's global package cache across builds.
16
+ RUN --mount=type=cache,target=/root/.bun/install/cache \
17
+ bun install --frozen-lockfile --ignore-scripts
16
18
 
17
19
  # Copy the rest of the source code
18
20
  COPY . .
@@ -28,7 +30,7 @@ RUN bun run build
28
30
  # application. It uses a slim base image and only includes production
29
31
  # dependencies and build artifacts.
30
32
  # ==============================================================================
31
- FROM oven/bun:1.3-slim AS production
33
+ FROM oven/bun:1.3.14-slim AS production
32
34
 
33
35
  WORKDIR /usr/src/app
34
36
 
@@ -49,13 +51,15 @@ COPY package.json bun.lock ./
49
51
 
50
52
  # Install only production dependencies, ignoring any lifecycle scripts (like 'prepare')
51
53
  # that are not needed in the final production image.
52
- RUN bun install --production --frozen-lockfile --ignore-scripts
54
+ RUN --mount=type=cache,target=/root/.bun/install/cache \
55
+ bun install --production --frozen-lockfile --ignore-scripts
53
56
 
54
57
  # Conditionally install OpenTelemetry optional peer dependencies (Tier 3).
55
58
  # These are not bundled by default to keep the base image lean. Enable at build time
56
59
  # with: docker build --build-arg OTEL_ENABLED=true
57
60
  ARG OTEL_ENABLED=true
58
- RUN if [ "$OTEL_ENABLED" = "true" ]; then \
61
+ RUN --mount=type=cache,target=/root/.bun/install/cache \
62
+ if [ "$OTEL_ENABLED" = "true" ]; then \
59
63
  bun add @hono/otel \
60
64
  @opentelemetry/instrumentation-http \
61
65
  @opentelemetry/exporter-metrics-otlp-http \
package/LICENSE CHANGED
@@ -186,7 +186,7 @@ Apache License
186
186
  same "printed page" as the copyright notice for easier
187
187
  identification within third-party archives.
188
188
 
189
- Copyright 2025 Casey Hand @cyanheads
189
+ Copyright 2026 Casey Hand @cyanheads
190
190
 
191
191
  Licensed under the Apache License, Version 2.0 (the "License");
192
192
  you may not use this file except in compliance with the License.
package/README.md CHANGED
@@ -7,7 +7,7 @@
7
7
 
8
8
  <div align="center">
9
9
 
10
- [![Version](https://img.shields.io/badge/Version-0.4.0-blue.svg?style=flat-square)](./CHANGELOG.md) [![License](https://img.shields.io/badge/License-Apache%202.0-orange.svg?style=flat-square)](./LICENSE) [![Docker](https://img.shields.io/badge/Docker-ghcr.io-2496ED?style=flat-square&logo=docker&logoColor=white)](https://github.com/users/cyanheads/packages/container/package/ensembl-mcp-server) [![MCP SDK](https://img.shields.io/badge/MCP%20SDK-^1.29.0-green.svg?style=flat-square)](https://modelcontextprotocol.io/) [![npm](https://img.shields.io/npm/v/@cyanheads/ensembl-mcp-server?style=flat-square&logo=npm&logoColor=white)](https://www.npmjs.com/package/@cyanheads/ensembl-mcp-server) [![TypeScript](https://img.shields.io/badge/TypeScript-^6.0.3-3178C6.svg?style=flat-square)](https://www.typescriptlang.org/) [![Bun](https://img.shields.io/badge/Bun-v1.3.11-blueviolet.svg?style=flat-square)](https://bun.sh/)
10
+ [![Version](https://img.shields.io/badge/Version-0.4.1-blue.svg?style=flat-square)](./CHANGELOG.md) [![License](https://img.shields.io/badge/License-Apache%202.0-orange.svg?style=flat-square)](./LICENSE) [![Docker](https://img.shields.io/badge/Docker-ghcr.io-2496ED?style=flat-square&logo=docker&logoColor=white)](https://github.com/users/cyanheads/packages/container/package/ensembl-mcp-server) [![MCP SDK](https://img.shields.io/badge/MCP%20SDK-^1.29.0-green.svg?style=flat-square)](https://modelcontextprotocol.io/) [![npm](https://img.shields.io/npm/v/@cyanheads/ensembl-mcp-server?style=flat-square&logo=npm&logoColor=white)](https://www.npmjs.com/package/@cyanheads/ensembl-mcp-server) [![TypeScript](https://img.shields.io/badge/TypeScript-^6.0.3-3178C6.svg?style=flat-square)](https://www.typescriptlang.org/) [![Bun](https://img.shields.io/badge/Bun-v1.3.14-blueviolet.svg?style=flat-square)](https://bun.sh/)
11
11
 
12
12
  </div>
13
13
 
@@ -235,7 +235,7 @@ MCP_TRANSPORT_TYPE=http MCP_HTTP_PORT=3010 bun run start:http
235
235
 
236
236
  ### Prerequisites
237
237
 
238
- - [Bun v1.3.11](https://bun.sh/) or higher (or Node.js v24+).
238
+ - [Bun v1.3.14](https://bun.sh/) or higher (or Node.js v24+).
239
239
  - No API key required — Ensembl REST is fully public.
240
240
 
241
241
  ### Installation
@@ -0,0 +1,30 @@
1
+ ---
2
+ summary: "ensembl_get_sequence forwards expand_5prime/expand_3prime to stable-ID genomic lookups and accepts a bare chr:start-end region when species is set; mcp-ts-core 0.10.10 → 0.10.14 with a Bun supply-chain guard and Dockerfile hardening"
3
+ breaking: false
4
+ security: false
5
+ ---
6
+
7
+ # 0.4.1 — 2026-07-09
8
+
9
+ ## Added
10
+
11
+ - **`ensembl_get_sequence` accepts a bare `chr:start-end` region when `species` is set** — alongside the existing `species:chr:start-end` form, so region-mode input chains directly from `ensembl_lookup_gene`/`ensembl_query_region` coordinates without repackaging into a server-specific string. A bare region given without `species` throws the new `missing_species` `ValidationError`. ([#14](https://github.com/cyanheads/ensembl-mcp-server/issues/14))
12
+
13
+ ## Changed
14
+
15
+ - **`@cyanheads/mcp-ts-core` maintenance adoption** — 12 skills re-synced to the current framework set; see Dependencies for the version arrow.
16
+ - **Supply-chain guard** — `bunfig.toml` sets `install.minimumReleaseAge` (3 days, `@cyanheads/mcp-ts-core` excluded) and `install.security.scanner = "@socketsecurity/bun-security-scanner"`.
17
+ - **`devcheck.config.json`** outdated-package allowlist adds `@socketsecurity/bun-security-scanner`; `scripts/devcheck.ts`'s outdated check also skips any package held back by the `minimumReleaseAge` guard instead of flagging it as unexpected.
18
+ - **`Dockerfile`** pins `oven/bun:1.3.14` (was floating `1.3`), adds BuildKit cache mounts to both install stages, and runs the build-stage install with `--ignore-scripts`.
19
+ - **`.github/SECURITY.md`** and **`.gitattributes`** added; **`LICENSE`** copyright year 2025 → 2026.
20
+
21
+ ## Fixed
22
+
23
+ - **`ensembl_get_sequence` stable-ID genomic lookups now forward `expand_5prime`/`expand_3prime`** — previously only region-mode requests received these params, so a stable-ID call returned the same sequence length regardless of the requested expansion. `EnsemblService.getSequenceById` now accepts both params and gates them to `type=genomic` (Ensembl ignores them for cdna/cds/protein). ([#13](https://github.com/cyanheads/ensembl-mcp-server/issues/13))
24
+
25
+ ## Dependencies
26
+
27
+ - `@cyanheads/mcp-ts-core` `^0.10.10` → `^0.10.14`
28
+ - `tsc-alias` `^1.8.17` → `^1.9.0`
29
+ - `vitest` `^4.1.9` → `^4.1.10`
30
+ - `@socketsecurity/bun-security-scanner` `^1.1.2` added
@@ -15,9 +15,11 @@ summary: ""
15
15
  # usage. Flagged as `Breaking` in the rollup.
16
16
  breaking: false
17
17
 
18
- # Set `true` if this release contains any security fix. Pairs with the
19
- # `## Security` section below. Flagged as `Security` in the rollup so
20
- # users can triage upgrade urgency at a glance.
18
+ # Set `true` ONLY for a security fix in THIS project's own source code — a
19
+ # vulnerability or hardening in code you ship. A dependency or transitive CVE
20
+ # bump is routine maintenance, NOT a security release: record it under
21
+ # `## Dependencies` (with the advisory ID) and leave this `false`. When true,
22
+ # pairs with the `## Security` section below and flags `Security` in the rollup.
21
23
  security: false
22
24
 
23
25
  # Optional free-form notes for maintenance agents processing this release.
@@ -31,5 +31,10 @@ export declare const ensemblGetSequence: import("@cyanheads/mcp-ts-core").ToolDe
31
31
  readonly code: JsonRpcErrorCode.ValidationError;
32
32
  readonly when: "The requested sequence type is incompatible with the provided ID type.";
33
33
  readonly recovery: string;
34
+ }, {
35
+ readonly reason: "missing_species";
36
+ readonly code: JsonRpcErrorCode.ValidationError;
37
+ readonly when: "A bare chr:start-end region was given without a species.";
38
+ readonly recovery: string;
34
39
  }], undefined>;
35
40
  //# sourceMappingURL=get-sequence.tool.d.ts.map
@@ -1 +1 @@
1
- {"version":3,"file":"get-sequence.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/get-sequence.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAKjE,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;cA8K7B,CAAC"}
1
+ {"version":3,"file":"get-sequence.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/get-sequence.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAKjE,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;cA8L7B,CAAC"}
@@ -12,17 +12,18 @@ export const ensemblGetSequence = tool('ensembl_get_sequence', {
12
12
  'Returns the sequence with its stable ID, molecule type, and character count — large sequences are ' +
13
13
  'returned in full but the length is stated so callers can budget context. The type parameter selects ' +
14
14
  'which sequence is fetched: genomic (default, includes introns), cdna (spliced transcript), ' +
15
- 'cds (coding sequence only), protein. For region mode, set id to the format species:chr:start-end ' +
16
- '(e.g. homo_sapiens:13:32315086-32400268) and set species. Protein sequences require a transcript or ' +
15
+ 'cds (coding sequence only), protein. For region mode, set id to a region — either ' +
16
+ 'species:chr:start-end (e.g. homo_sapiens:13:32315086-32400268) or a bare chr:start-end with ' +
17
+ 'species set (e.g. id 13:32315086-32400268, species homo_sapiens). Protein sequences require a transcript or ' +
17
18
  'protein stable ID (ENST…/ENSP…), not a gene ID — use ensembl_lookup_gene with expand_transcripts=true ' +
18
19
  'to get the canonical transcript ID first.',
19
20
  annotations: { readOnlyHint: true, openWorldHint: true, idempotentHint: true },
20
21
  input: z.object({
21
22
  id: z
22
23
  .string()
23
- .describe('Ensembl stable ID (ENSG…, ENST…, ENSP…) or region in the format ' +
24
- 'species:chr:start-end (e.g. homo_sapiens:13:32315086-32400268) for region mode. ' +
25
- 'For genomic region queries, species is also required.'),
24
+ .describe('Ensembl stable ID (ENSG…, ENST…, ENSP…) or a genomic region for region mode. ' +
25
+ 'Region accepts species:chr:start-end (e.g. homo_sapiens:13:32315086-32400268) or a bare ' +
26
+ 'chr:start-end (e.g. 13:32315086-32400268) when the species field is set.'),
26
27
  type: z
27
28
  .enum(SEQUENCE_TYPES)
28
29
  .default('genomic')
@@ -35,7 +36,8 @@ export const ensemblGetSequence = tool('ensembl_get_sequence', {
35
36
  .string()
36
37
  .optional()
37
38
  .describe('Species in Ensembl internal format (e.g. homo_sapiens). ' +
38
- 'Required for region mode (when id is a species:chr:start-end string). ' +
39
+ 'Required for a bare chr:start-end region; optional for the species:chr:start-end form ' +
40
+ '(the embedded species is used when the field is omitted). ' +
39
41
  'Optional for stable ID lookups — Ensembl infers species from the ID prefix.'),
40
42
  expand_5prime: z
41
43
  .number()
@@ -82,26 +84,38 @@ export const ensemblGetSequence = tool('ensembl_get_sequence', {
82
84
  'Use ensembl_lookup_gene with expand_transcripts=true to find the canonical transcript ID, ' +
83
85
  'then request the protein or cds sequence from that transcript ID.',
84
86
  },
87
+ {
88
+ reason: 'missing_species',
89
+ code: JsonRpcErrorCode.ValidationError,
90
+ when: 'A bare chr:start-end region was given without a species.',
91
+ recovery: 'Set species (e.g. homo_sapiens) alongside the chr:start-end region, ' +
92
+ 'or use the combined species:chr:start-end id form.',
93
+ },
85
94
  ],
86
95
  async handler(input, ctx) {
87
96
  ctx.log.info('Fetching sequence', { id: input.id, type: input.type });
88
97
  const service = getEnsemblService();
89
- // Detect region mode: contains ":" after optional species prefix.
90
- // Scaffold/patch names carry dots (e.g. GL000220.1), so the chromosome
91
- // segment allows "." in addition to word characters.
92
- const regionPattern = /^[a-z_]+:[\w.]+:\d+-\d+$/i;
93
- const isRegion = regionPattern.test(input.id);
94
- if (isRegion) {
95
- // Parse "species:chr:start-end"
96
- const parts = input.id.split(':');
97
- if (parts.length !== 3) {
98
- throw ctx.fail('not_found', `Region format should be species:chr:start-end, got: ${input.id}`);
98
+ // Region mode accepts two id shapes:
99
+ // species:chr:start-end embedded species (e.g. homo_sapiens:13:32315086-32400268)
100
+ // chr:start-end bare region — the species field supplies the species
101
+ // Scaffold/patch names carry dots (e.g. GL000220.1), so the chromosome segment
102
+ // allows "." alongside word characters. Colon count is the discriminant: the two
103
+ // patterns are mutually exclusive (2 colons vs. 1), and a stable ID (ENSG…, no
104
+ // colon) matches neither, routing to stable-ID mode below.
105
+ const isPrefixedRegion = /^[a-z_]+:[\w.]+:\d+-\d+$/i.test(input.id);
106
+ const isBareRegion = /^[\w.]+:\d+-\d+$/.test(input.id);
107
+ if (isPrefixedRegion || isBareRegion) {
108
+ // For the prefixed form the species is the segment before the first colon and
109
+ // the region is everything after it; the bare form takes its species from the
110
+ // species field and uses the whole id as the region.
111
+ const firstColon = input.id.indexOf(':');
112
+ const species = input.species?.trim() || (isPrefixedRegion ? input.id.slice(0, firstColon) : undefined);
113
+ const region = isPrefixedRegion ? input.id.slice(firstColon + 1) : input.id;
114
+ if (!species) {
115
+ throw ctx.fail('missing_species', `Region ${input.id} needs a species — set species (e.g. homo_sapiens) or use the species:chr:start-end id form.`);
99
116
  }
100
- const [speciesFromId, chr, range] = parts;
101
- const speciesStr = input.species?.trim() || speciesFromId;
102
- const region = `${chr}:${range}`;
103
117
  const seq = await service
104
- .getSequenceByRegion(speciesStr, region, input.expand_5prime, input.expand_3prime, ctx)
118
+ .getSequenceByRegion(species, region, input.expand_5prime, input.expand_3prime, ctx)
105
119
  .catch((err) => {
106
120
  const msg = err instanceof Error ? err.message : String(err);
107
121
  if (/not found|invalid|no stable id/i.test(msg)) {
@@ -113,7 +127,7 @@ export const ensemblGetSequence = tool('ensembl_get_sequence', {
113
127
  }
114
128
  // Stable ID mode
115
129
  const seq = await service
116
- .getSequenceById(input.id.trim(), input.type, ctx)
130
+ .getSequenceById(input.id.trim(), input.type, input.expand_5prime, input.expand_3prime, ctx)
117
131
  .catch((err) => {
118
132
  const msg = err instanceof Error ? err.message : String(err);
119
133
  if (/protein.*gene|cds.*gene|type.*mismatch|incompatible/i.test(msg) ||
@@ -1 +1 @@
1
- {"version":3,"file":"get-sequence.tool.js","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/get-sequence.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,IAAI,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AACjE,OAAO,EAAE,iBAAiB,EAAE,MAAM,uCAAuC,CAAC;AAE1E,MAAM,cAAc,GAAG,CAAC,SAAS,EAAE,MAAM,EAAE,KAAK,EAAE,SAAS,CAAU,CAAC;AAEtE,MAAM,CAAC,MAAM,kBAAkB,GAAG,IAAI,CAAC,sBAAsB,EAAE;IAC7D,KAAK,EAAE,cAAc;IACrB,WAAW,EACT,oGAAoG;QACpG,oGAAoG;QACpG,sGAAsG;QACtG,6FAA6F;QAC7F,mGAAmG;QACnG,sGAAsG;QACtG,wGAAwG;QACxG,2CAA2C;IAC7C,WAAW,EAAE,EAAE,YAAY,EAAE,IAAI,EAAE,aAAa,EAAE,IAAI,EAAE,cAAc,EAAE,IAAI,EAAE;IAC9E,KAAK,EAAE,CAAC,CAAC,MAAM,CAAC;QACd,EAAE,EAAE,CAAC;aACF,MAAM,EAAE;aACR,QAAQ,CACP,kEAAkE;YAChE,kFAAkF;YAClF,uDAAuD,CAC1D;QACH,IAAI,EAAE,CAAC;aACJ,IAAI,CAAC,cAAc,CAAC;aACpB,OAAO,CAAC,SAAS,CAAC;aAClB,QAAQ,CACP,6BAA6B;YAC3B,yDAAyD;YACzD,yDAAyD;YACzD,iFAAiF;YACjF,4DAA4D,CAC/D;QACH,OAAO,EAAE,CAAC;aACP,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CACP,0DAA0D;YACxD,wEAAwE;YACxE,6EAA6E,CAChF;QACH,aAAa,EAAE,CAAC;aACb,MAAM,EAAE;aACR,GAAG,EAAE;aACL,GAAG,CAAC,CAAC,CAAC;aACN,OAAO,CAAC,CAAC,CAAC;aACV,QAAQ,CACP,mFAAmF;YACjF,kEAAkE,CACrE;QACH,aAAa,EAAE,CAAC;aACb,MAAM,EAAE;aACR,GAAG,EAAE;aACL,GAAG,CAAC,CAAC,CAAC;aACN,OAAO,CAAC,CAAC,CAAC;aACV,QAAQ,CACP,qFAAqF;YACnF,kEAAkE,CACrE;KACJ,CAAC;IACF,MAAM,EAAE,CAAC,CAAC,MAAM,CAAC;QACf,EAAE,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,8CAA8C,CAAC;QACvE,IAAI,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,0DAA0D,CAAC;QACrF,GAAG,EAAE,CAAC;aACH,MAAM,EAAE;aACR,QAAQ,CACP,wFAAwF;YACtF,wDAAwD;YACxD,sEAAsE,CACzE;QACH,MAAM,EAAE,CAAC;aACN,MAAM,EAAE;aACR,QAAQ,CACP,qGAAqG;YACnG,yEAAyE,CAC5E;QACH,WAAW,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,iDAAiD,CAAC;KAC/F,CAAC;IAEF,MAAM,EAAE;QACN;YACE,MAAM,EAAE,WAAW;YACnB,IAAI,EAAE,gBAAgB,CAAC,QAAQ;YAC/B,IAAI,EAAE,mDAAmD;YACzD,QAAQ,EACN,oEAAoE;gBACpE,wDAAwD;SAC3D;QACD;YACE,MAAM,EAAE,eAAe;YACvB,IAAI,EAAE,gBAAgB,CAAC,eAAe;YACtC,IAAI,EAAE,wEAAwE;YAC9E,QAAQ,EACN,kGAAkG;gBAClG,4FAA4F;gBAC5F,mEAAmE;SACtE;KACF;IAED,KAAK,CAAC,OAAO,CAAC,KAAK,EAAE,GAAG;QACtB,GAAG,CAAC,GAAG,CAAC,IAAI,CAAC,mBAAmB,EAAE,EAAE,EAAE,EAAE,KAAK,CAAC,EAAE,EAAE,IAAI,EAAE,KAAK,CAAC,IAAI,EAAE,CAAC,CAAC;QACtE,MAAM,OAAO,GAAG,iBAAiB,EAAE,CAAC;QAEpC,kEAAkE;QAClE,uEAAuE;QACvE,qDAAqD;QACrD,MAAM,aAAa,GAAG,2BAA2B,CAAC;QAClD,MAAM,QAAQ,GAAG,aAAa,CAAC,IAAI,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;QAE9C,IAAI,QAAQ,EAAE,CAAC;YACb,gCAAgC;YAChC,MAAM,KAAK,GAAG,KAAK,CAAC,EAAE,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC;YAClC,IAAI,KAAK,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;gBACvB,MAAM,GAAG,CAAC,IAAI,CACZ,WAAW,EACX,uDAAuD,KAAK,CAAC,EAAE,EAAE,CAClE,CAAC;YACJ,CAAC;YACD,MAAM,CAAC,aAAa,EAAE,GAAG,EAAE,KAAK,CAAC,GAAG,KAAiC,CAAC;YACtE,MAAM,UAAU,GAAG,KAAK,CAAC,OAAO,EAAE,IAAI,EAAE,IAAI,aAAa,CAAC;YAC1D,MAAM,MAAM,GAAG,GAAG,GAAG,IAAI,KAAK,EAAE,CAAC;YACjC,MAAM,GAAG,GAAG,MAAM,OAAO;iBACtB,mBAAmB,CAAC,UAAU,EAAE,MAAM,EAAE,KAAK,CAAC,aAAa,EAAE,KAAK,CAAC,aAAa,EAAE,GAAG,CAAC;iBACtF,KAAK,CAAC,CAAC,GAAY,EAAE,EAAE;gBACtB,MAAM,GAAG,GAAG,GAAG,YAAY,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;gBAC7D,IAAI,iCAAiC,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC;oBAChD,MAAM,GAAG,CAAC,IAAI,CAAC,WAAW,EAAE,UAAU,KAAK,CAAC,EAAE,eAAe,GAAG,EAAE,CAAC,CAAC;gBACtE,CAAC;gBACD,MAAM,GAAG,CAAC;YACZ,CAAC,CAAC,CAAC;YACL,OAAO,GAAG,CAAC;QACb,CAAC;QAED,iBAAiB;QACjB,MAAM,GAAG,GAAG,MAAM,OAAO;aACtB,eAAe,CAAC,KAAK,CAAC,EAAE,CAAC,IAAI,EAAE,EAAE,KAAK,CAAC,IAAI,EAAE,GAAG,CAAC;aACjD,KAAK,CAAC,CAAC,GAAY,EAAE,EAAE;YACtB,MAAM,GAAG,GAAG,GAAG,YAAY,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;YAC7D,IACE,sDAAsD,CAAC,IAAI,CAAC,GAAG,CAAC;gBAChE,uCAAuC,CAAC,IAAI,CAAC,GAAG,CAAC;gBACjD,8BAA8B,CAAC,IAAI,CAAC,GAAG,CAAC,EACxC,CAAC;gBACD,MAAM,GAAG,CAAC,IAAI,CACZ,eAAe,EACf,wBAAwB,KAAK,CAAC,IAAI,oEAAoE;oBACpG,8EAA8E,CACjF,CAAC;YACJ,CAAC;YACD,IAAI,yBAAyB,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC;gBACxC,MAAM,GAAG,CAAC,IAAI,CAAC,WAAW,EAAE,MAAM,KAAK,CAAC,EAAE,wBAAwB,CAAC,CAAC;YACtE,CAAC;YACD,MAAM,GAAG,CAAC;QACZ,CAAC,CAAC,CAAC;QACL,OAAO,GAAG,CAAC;IACb,CAAC;IAED,MAAM,EAAE,CAAC,MAAM,EAAE,EAAE;QACjB,MAAM,KAAK,GAAa,EAAE,CAAC;QAC3B,KAAK,CAAC,IAAI,CAAC,gBAAgB,MAAM,CAAC,EAAE,EAAE,CAAC,CAAC;QACxC,MAAM,IAAI,GAAG,MAAM,CAAC,IAAI,KAAK,SAAS,CAAC,CAAC,CAAC,UAAU,CAAC,CAAC,CAAC,IAAI,CAAC;QAC3D,KAAK,CAAC,IAAI,CAAC,aAAa,MAAM,CAAC,IAAI,kBAAkB,MAAM,CAAC,MAAM,CAAC,cAAc,EAAE,IAAI,IAAI,EAAE,CAAC,CAAC;QAC/F,IAAI,MAAM,CAAC,WAAW;YAAE,KAAK,CAAC,IAAI,CAAC,oBAAoB,MAAM,CAAC,WAAW,EAAE,CAAC,CAAC;QAC7E,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACf,6DAA6D;QAC7D,IAAI,MAAM,CAAC,GAAG,CAAC,MAAM,GAAG,GAAG,EAAE,CAAC;YAC5B,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;YAClB,KAAK,CAAC,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC,CAAC;YACrC,KAAK,CAAC,IAAI,CAAC,MAAM,MAAM,CAAC,MAAM,CAAC,cAAc,EAAE,oBAAoB,CAAC,CAAC;YACrE,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;QACpB,CAAC;aAAM,CAAC;YACN,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;YAClB,KAAK,CAAC,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;YACvB,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;QACpB,CAAC;QACD,OAAO,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACpD,CAAC;CACF,CAAC,CAAC"}
1
+ {"version":3,"file":"get-sequence.tool.js","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/get-sequence.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,IAAI,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AACjE,OAAO,EAAE,iBAAiB,EAAE,MAAM,uCAAuC,CAAC;AAE1E,MAAM,cAAc,GAAG,CAAC,SAAS,EAAE,MAAM,EAAE,KAAK,EAAE,SAAS,CAAU,CAAC;AAEtE,MAAM,CAAC,MAAM,kBAAkB,GAAG,IAAI,CAAC,sBAAsB,EAAE;IAC7D,KAAK,EAAE,cAAc;IACrB,WAAW,EACT,oGAAoG;QACpG,oGAAoG;QACpG,sGAAsG;QACtG,6FAA6F;QAC7F,oFAAoF;QACpF,8FAA8F;QAC9F,8GAA8G;QAC9G,wGAAwG;QACxG,2CAA2C;IAC7C,WAAW,EAAE,EAAE,YAAY,EAAE,IAAI,EAAE,aAAa,EAAE,IAAI,EAAE,cAAc,EAAE,IAAI,EAAE;IAC9E,KAAK,EAAE,CAAC,CAAC,MAAM,CAAC;QACd,EAAE,EAAE,CAAC;aACF,MAAM,EAAE;aACR,QAAQ,CACP,+EAA+E;YAC7E,0FAA0F;YAC1F,0EAA0E,CAC7E;QACH,IAAI,EAAE,CAAC;aACJ,IAAI,CAAC,cAAc,CAAC;aACpB,OAAO,CAAC,SAAS,CAAC;aAClB,QAAQ,CACP,6BAA6B;YAC3B,yDAAyD;YACzD,yDAAyD;YACzD,iFAAiF;YACjF,4DAA4D,CAC/D;QACH,OAAO,EAAE,CAAC;aACP,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CACP,0DAA0D;YACxD,wFAAwF;YACxF,4DAA4D;YAC5D,6EAA6E,CAChF;QACH,aAAa,EAAE,CAAC;aACb,MAAM,EAAE;aACR,GAAG,EAAE;aACL,GAAG,CAAC,CAAC,CAAC;aACN,OAAO,CAAC,CAAC,CAAC;aACV,QAAQ,CACP,mFAAmF;YACjF,kEAAkE,CACrE;QACH,aAAa,EAAE,CAAC;aACb,MAAM,EAAE;aACR,GAAG,EAAE;aACL,GAAG,CAAC,CAAC,CAAC;aACN,OAAO,CAAC,CAAC,CAAC;aACV,QAAQ,CACP,qFAAqF;YACnF,kEAAkE,CACrE;KACJ,CAAC;IACF,MAAM,EAAE,CAAC,CAAC,MAAM,CAAC;QACf,EAAE,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,8CAA8C,CAAC;QACvE,IAAI,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,0DAA0D,CAAC;QACrF,GAAG,EAAE,CAAC;aACH,MAAM,EAAE;aACR,QAAQ,CACP,wFAAwF;YACtF,wDAAwD;YACxD,sEAAsE,CACzE;QACH,MAAM,EAAE,CAAC;aACN,MAAM,EAAE;aACR,QAAQ,CACP,qGAAqG;YACnG,yEAAyE,CAC5E;QACH,WAAW,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,iDAAiD,CAAC;KAC/F,CAAC;IAEF,MAAM,EAAE;QACN;YACE,MAAM,EAAE,WAAW;YACnB,IAAI,EAAE,gBAAgB,CAAC,QAAQ;YAC/B,IAAI,EAAE,mDAAmD;YACzD,QAAQ,EACN,oEAAoE;gBACpE,wDAAwD;SAC3D;QACD;YACE,MAAM,EAAE,eAAe;YACvB,IAAI,EAAE,gBAAgB,CAAC,eAAe;YACtC,IAAI,EAAE,wEAAwE;YAC9E,QAAQ,EACN,kGAAkG;gBAClG,4FAA4F;gBAC5F,mEAAmE;SACtE;QACD;YACE,MAAM,EAAE,iBAAiB;YACzB,IAAI,EAAE,gBAAgB,CAAC,eAAe;YACtC,IAAI,EAAE,0DAA0D;YAChE,QAAQ,EACN,sEAAsE;gBACtE,oDAAoD;SACvD;KACF;IAED,KAAK,CAAC,OAAO,CAAC,KAAK,EAAE,GAAG;QACtB,GAAG,CAAC,GAAG,CAAC,IAAI,CAAC,mBAAmB,EAAE,EAAE,EAAE,EAAE,KAAK,CAAC,EAAE,EAAE,IAAI,EAAE,KAAK,CAAC,IAAI,EAAE,CAAC,CAAC;QACtE,MAAM,OAAO,GAAG,iBAAiB,EAAE,CAAC;QAEpC,qCAAqC;QACrC,sFAAsF;QACtF,iFAAiF;QACjF,+EAA+E;QAC/E,iFAAiF;QACjF,+EAA+E;QAC/E,2DAA2D;QAC3D,MAAM,gBAAgB,GAAG,2BAA2B,CAAC,IAAI,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;QACpE,MAAM,YAAY,GAAG,kBAAkB,CAAC,IAAI,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;QAEvD,IAAI,gBAAgB,IAAI,YAAY,EAAE,CAAC;YACrC,8EAA8E;YAC9E,8EAA8E;YAC9E,qDAAqD;YACrD,MAAM,UAAU,GAAG,KAAK,CAAC,EAAE,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC;YACzC,MAAM,OAAO,GACX,KAAK,CAAC,OAAO,EAAE,IAAI,EAAE,IAAI,CAAC,gBAAgB,CAAC,CAAC,CAAC,KAAK,CAAC,EAAE,CAAC,KAAK,CAAC,CAAC,EAAE,UAAU,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC;YAC1F,MAAM,MAAM,GAAG,gBAAgB,CAAC,CAAC,CAAC,KAAK,CAAC,EAAE,CAAC,KAAK,CAAC,UAAU,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC,EAAE,CAAC;YAC5E,IAAI,CAAC,OAAO,EAAE,CAAC;gBACb,MAAM,GAAG,CAAC,IAAI,CACZ,iBAAiB,EACjB,UAAU,KAAK,CAAC,EAAE,8FAA8F,CACjH,CAAC;YACJ,CAAC;YACD,MAAM,GAAG,GAAG,MAAM,OAAO;iBACtB,mBAAmB,CAAC,OAAO,EAAE,MAAM,EAAE,KAAK,CAAC,aAAa,EAAE,KAAK,CAAC,aAAa,EAAE,GAAG,CAAC;iBACnF,KAAK,CAAC,CAAC,GAAY,EAAE,EAAE;gBACtB,MAAM,GAAG,GAAG,GAAG,YAAY,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;gBAC7D,IAAI,iCAAiC,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC;oBAChD,MAAM,GAAG,CAAC,IAAI,CAAC,WAAW,EAAE,UAAU,KAAK,CAAC,EAAE,eAAe,GAAG,EAAE,CAAC,CAAC;gBACtE,CAAC;gBACD,MAAM,GAAG,CAAC;YACZ,CAAC,CAAC,CAAC;YACL,OAAO,GAAG,CAAC;QACb,CAAC;QAED,iBAAiB;QACjB,MAAM,GAAG,GAAG,MAAM,OAAO;aACtB,eAAe,CAAC,KAAK,CAAC,EAAE,CAAC,IAAI,EAAE,EAAE,KAAK,CAAC,IAAI,EAAE,KAAK,CAAC,aAAa,EAAE,KAAK,CAAC,aAAa,EAAE,GAAG,CAAC;aAC3F,KAAK,CAAC,CAAC,GAAY,EAAE,EAAE;YACtB,MAAM,GAAG,GAAG,GAAG,YAAY,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;YAC7D,IACE,sDAAsD,CAAC,IAAI,CAAC,GAAG,CAAC;gBAChE,uCAAuC,CAAC,IAAI,CAAC,GAAG,CAAC;gBACjD,8BAA8B,CAAC,IAAI,CAAC,GAAG,CAAC,EACxC,CAAC;gBACD,MAAM,GAAG,CAAC,IAAI,CACZ,eAAe,EACf,wBAAwB,KAAK,CAAC,IAAI,oEAAoE;oBACpG,8EAA8E,CACjF,CAAC;YACJ,CAAC;YACD,IAAI,yBAAyB,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC;gBACxC,MAAM,GAAG,CAAC,IAAI,CAAC,WAAW,EAAE,MAAM,KAAK,CAAC,EAAE,wBAAwB,CAAC,CAAC;YACtE,CAAC;YACD,MAAM,GAAG,CAAC;QACZ,CAAC,CAAC,CAAC;QACL,OAAO,GAAG,CAAC;IACb,CAAC;IAED,MAAM,EAAE,CAAC,MAAM,EAAE,EAAE;QACjB,MAAM,KAAK,GAAa,EAAE,CAAC;QAC3B,KAAK,CAAC,IAAI,CAAC,gBAAgB,MAAM,CAAC,EAAE,EAAE,CAAC,CAAC;QACxC,MAAM,IAAI,GAAG,MAAM,CAAC,IAAI,KAAK,SAAS,CAAC,CAAC,CAAC,UAAU,CAAC,CAAC,CAAC,IAAI,CAAC;QAC3D,KAAK,CAAC,IAAI,CAAC,aAAa,MAAM,CAAC,IAAI,kBAAkB,MAAM,CAAC,MAAM,CAAC,cAAc,EAAE,IAAI,IAAI,EAAE,CAAC,CAAC;QAC/F,IAAI,MAAM,CAAC,WAAW;YAAE,KAAK,CAAC,IAAI,CAAC,oBAAoB,MAAM,CAAC,WAAW,EAAE,CAAC,CAAC;QAC7E,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACf,6DAA6D;QAC7D,IAAI,MAAM,CAAC,GAAG,CAAC,MAAM,GAAG,GAAG,EAAE,CAAC;YAC5B,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;YAClB,KAAK,CAAC,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC,CAAC;YACrC,KAAK,CAAC,IAAI,CAAC,MAAM,MAAM,CAAC,MAAM,CAAC,cAAc,EAAE,oBAAoB,CAAC,CAAC;YACrE,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;QACpB,CAAC;aAAM,CAAC;YACN,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;YAClB,KAAK,CAAC,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;YACvB,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;QACpB,CAAC;QACD,OAAO,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACpD,CAAC;CACF,CAAC,CAAC"}
@@ -17,7 +17,7 @@ export declare class EnsemblService {
17
17
  lookupGenesBatch(ids: string[], expandTranscripts: boolean, ctx: Context): Promise<Map<string, GeneRecord>>;
18
18
  lookupSymbolsBatch(symbols: string[], species: string, expandTranscripts: boolean, ctx: Context): Promise<Map<string, GeneRecord>>;
19
19
  lookupTranscript(id: string, ctx: Context): Promise<TranscriptRecord>;
20
- getSequenceById(id: string, type: string, ctx: Context): Promise<SequenceRecord>;
20
+ getSequenceById(id: string, type: string, expand5prime: number, expand3prime: number, ctx: Context): Promise<SequenceRecord>;
21
21
  getSequenceByRegion(species: string, region: string, expand5prime: number, expand3prime: number, ctx: Context): Promise<SequenceRecord>;
22
22
  queryRegion(species: string, region: string, features: string[], biotype: string | undefined, ctx: Context): Promise<OverlapFeature[]>;
23
23
  predictVariantHgvs(notation: string, species: string, ctx: Context): Promise<VepRecord[]>;
@@ -1 +1 @@
1
- {"version":3,"file":"ensembl-service.d.ts","sourceRoot":"","sources":["../../../src/services/ensembl/ensembl-service.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,wBAAwB,CAAC;AACtD,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,+BAA+B,CAAC;AAE/D,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,gCAAgC,CAAC;AAGrE,OAAO,KAAK,EAEV,UAAU,EAEV,cAAc,EACd,cAAc,EASd,cAAc,EACd,WAAW,EACX,gBAAgB,EAChB,SAAS,EACT,SAAS,EACV,MAAM,YAAY,CAAC;AAqKpB,qBAAa,cAAc;IACzB,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAS;gBAErB,OAAO,EAAE,SAAS,EAAE,QAAQ,EAAE,cAAc;YAM1C,SAAS;IAmFvB,OAAO,CAAC,cAAc;IAuBhB,UAAU,CACd,MAAM,EAAE,MAAM,EACd,OAAO,EAAE,MAAM,EACf,iBAAiB,EAAE,OAAO,EAC1B,GAAG,EAAE,OAAO,GACX,OAAO,CAAC,UAAU,CAAC;IAOhB,cAAc,CAAC,EAAE,EAAE,MAAM,EAAE,iBAAiB,EAAE,OAAO,EAAE,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,UAAU,CAAC;IAOzF,gBAAgB,CACpB,GAAG,EAAE,MAAM,EAAE,EACb,iBAAiB,EAAE,OAAO,EAC1B,GAAG,EAAE,OAAO,GACX,OAAO,CAAC,GAAG,CAAC,MAAM,EAAE,UAAU,CAAC,CAAC;IAc7B,kBAAkB,CACtB,OAAO,EAAE,MAAM,EAAE,EACjB,OAAO,EAAE,MAAM,EACf,iBAAiB,EAAE,OAAO,EAC1B,GAAG,EAAE,OAAO,GACX,OAAO,CAAC,GAAG,CAAC,MAAM,EAAE,UAAU,CAAC,CAAC;IAiB7B,gBAAgB,CAAC,EAAE,EAAE,MAAM,EAAE,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,gBAAgB,CAAC;IAQrE,eAAe,CAAC,EAAE,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,cAAc,CAAC;IAMhF,mBAAmB,CACvB,OAAO,EAAE,MAAM,EACf,MAAM,EAAE,MAAM,EACd,YAAY,EAAE,MAAM,EACpB,YAAY,EAAE,MAAM,EACpB,GAAG,EAAE,OAAO,GACX,OAAO,CAAC,cAAc,CAAC;IAYpB,WAAW,CACf,OAAO,EAAE,MAAM,EACf,MAAM,EAAE,MAAM,EACd,QAAQ,EAAE,MAAM,EAAE,EAClB,OAAO,EAAE,MAAM,GAAG,SAAS,EAC3B,GAAG,EAAE,OAAO,GACX,OAAO,CAAC,cAAc,EAAE,CAAC;IAWtB,kBAAkB,CAAC,QAAQ,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,SAAS,EAAE,CAAC;IAOzF,oBAAoB,CACxB,GAAG,EAAE,MAAM,EACX,KAAK,EAAE,MAAM,EACb,GAAG,EAAE,MAAM,EACX,MAAM,EAAE,MAAM,EACd,MAAM,EAAE,MAAM,EACd,OAAO,EAAE,MAAM,EACf,GAAG,EAAE,OAAO,GACX,OAAO,CAAC,SAAS,EAAE,CAAC;IAQjB,gBAAgB,CAAC,EAAE,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,SAAS,EAAE,CAAC;IASjF,mBAAmB,CACvB,MAAM,EAAE,MAAM,EACd,OAAO,EAAE,MAAM,EACf,IAAI,EAAE,MAAM,EACZ,aAAa,EAAE,MAAM,GAAG,SAAS,EACjC,GAAG,EAAE,OAAO,GACX,OAAO,CAAC,cAAc,CAAC;IAOpB,eAAe,CACnB,EAAE,EAAE,MAAM,EACV,OAAO,EAAE,MAAM,EACf,IAAI,EAAE,MAAM,EACZ,aAAa,EAAE,MAAM,GAAG,SAAS,EACjC,GAAG,EAAE,OAAO,GACX,OAAO,CAAC,cAAc,CAAC;IASpB,YAAY,CAAC,EAAE,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,GAAG,SAAS,EAAE,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,SAAS,EAAE,CAAC;IAUxF,WAAW,CAAC,QAAQ,EAAE,MAAM,GAAG,SAAS,EAAE,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,WAAW,EAAE,CAAC;CAMtF;AAMD,wBAAgB,kBAAkB,CAAC,MAAM,EAAE,SAAS,EAAE,OAAO,EAAE,cAAc,GAAG,IAAI,CAEnF;AAED,wBAAgB,iBAAiB,IAAI,cAAc,CAKlD"}
1
+ {"version":3,"file":"ensembl-service.d.ts","sourceRoot":"","sources":["../../../src/services/ensembl/ensembl-service.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,wBAAwB,CAAC;AACtD,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,+BAA+B,CAAC;AAE/D,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,gCAAgC,CAAC;AAGrE,OAAO,KAAK,EAEV,UAAU,EAEV,cAAc,EACd,cAAc,EASd,cAAc,EACd,WAAW,EACX,gBAAgB,EAChB,SAAS,EACT,SAAS,EACV,MAAM,YAAY,CAAC;AAqKpB,qBAAa,cAAc;IACzB,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAS;gBAErB,OAAO,EAAE,SAAS,EAAE,QAAQ,EAAE,cAAc;YAM1C,SAAS;IAmFvB,OAAO,CAAC,cAAc;IAuBhB,UAAU,CACd,MAAM,EAAE,MAAM,EACd,OAAO,EAAE,MAAM,EACf,iBAAiB,EAAE,OAAO,EAC1B,GAAG,EAAE,OAAO,GACX,OAAO,CAAC,UAAU,CAAC;IAOhB,cAAc,CAAC,EAAE,EAAE,MAAM,EAAE,iBAAiB,EAAE,OAAO,EAAE,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,UAAU,CAAC;IAOzF,gBAAgB,CACpB,GAAG,EAAE,MAAM,EAAE,EACb,iBAAiB,EAAE,OAAO,EAC1B,GAAG,EAAE,OAAO,GACX,OAAO,CAAC,GAAG,CAAC,MAAM,EAAE,UAAU,CAAC,CAAC;IAc7B,kBAAkB,CACtB,OAAO,EAAE,MAAM,EAAE,EACjB,OAAO,EAAE,MAAM,EACf,iBAAiB,EAAE,OAAO,EAC1B,GAAG,EAAE,OAAO,GACX,OAAO,CAAC,GAAG,CAAC,MAAM,EAAE,UAAU,CAAC,CAAC;IAiB7B,gBAAgB,CAAC,EAAE,EAAE,MAAM,EAAE,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,gBAAgB,CAAC;IAQrE,eAAe,CACnB,EAAE,EAAE,MAAM,EACV,IAAI,EAAE,MAAM,EACZ,YAAY,EAAE,MAAM,EACpB,YAAY,EAAE,MAAM,EACpB,GAAG,EAAE,OAAO,GACX,OAAO,CAAC,cAAc,CAAC;IAapB,mBAAmB,CACvB,OAAO,EAAE,MAAM,EACf,MAAM,EAAE,MAAM,EACd,YAAY,EAAE,MAAM,EACpB,YAAY,EAAE,MAAM,EACpB,GAAG,EAAE,OAAO,GACX,OAAO,CAAC,cAAc,CAAC;IAYpB,WAAW,CACf,OAAO,EAAE,MAAM,EACf,MAAM,EAAE,MAAM,EACd,QAAQ,EAAE,MAAM,EAAE,EAClB,OAAO,EAAE,MAAM,GAAG,SAAS,EAC3B,GAAG,EAAE,OAAO,GACX,OAAO,CAAC,cAAc,EAAE,CAAC;IAWtB,kBAAkB,CAAC,QAAQ,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,SAAS,EAAE,CAAC;IAOzF,oBAAoB,CACxB,GAAG,EAAE,MAAM,EACX,KAAK,EAAE,MAAM,EACb,GAAG,EAAE,MAAM,EACX,MAAM,EAAE,MAAM,EACd,MAAM,EAAE,MAAM,EACd,OAAO,EAAE,MAAM,EACf,GAAG,EAAE,OAAO,GACX,OAAO,CAAC,SAAS,EAAE,CAAC;IAQjB,gBAAgB,CAAC,EAAE,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,SAAS,EAAE,CAAC;IASjF,mBAAmB,CACvB,MAAM,EAAE,MAAM,EACd,OAAO,EAAE,MAAM,EACf,IAAI,EAAE,MAAM,EACZ,aAAa,EAAE,MAAM,GAAG,SAAS,EACjC,GAAG,EAAE,OAAO,GACX,OAAO,CAAC,cAAc,CAAC;IAOpB,eAAe,CACnB,EAAE,EAAE,MAAM,EACV,OAAO,EAAE,MAAM,EACf,IAAI,EAAE,MAAM,EACZ,aAAa,EAAE,MAAM,GAAG,SAAS,EACjC,GAAG,EAAE,OAAO,GACX,OAAO,CAAC,cAAc,CAAC;IASpB,YAAY,CAAC,EAAE,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,GAAG,SAAS,EAAE,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,SAAS,EAAE,CAAC;IAUxF,WAAW,CAAC,QAAQ,EAAE,MAAM,GAAG,SAAS,EAAE,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,WAAW,EAAE,CAAC;CAMtF;AAMD,wBAAgB,kBAAkB,CAAC,MAAM,EAAE,SAAS,EAAE,OAAO,EAAE,cAAc,GAAG,IAAI,CAEnF;AAED,wBAAgB,iBAAiB,IAAI,cAAc,CAKlD"}
@@ -283,8 +283,17 @@ export class EnsemblService {
283
283
  return normalizeTranscript(raw);
284
284
  }
285
285
  // --- Sequence ---
286
- async getSequenceById(id, type, ctx) {
287
- const path = `/sequence/id/${encodeURIComponent(id)}?type=${encodeURIComponent(type)}`;
286
+ async getSequenceById(id, type, expand5prime, expand3prime, ctx) {
287
+ const params = [`type=${encodeURIComponent(type)}`];
288
+ // Ensembl only honors expansion when type=genomic; it is meaningless for
289
+ // cdna/cds/protein, so gate the params to avoid sending them where the API ignores them.
290
+ if (type === 'genomic') {
291
+ if (expand5prime > 0)
292
+ params.push(`expand_5prime=${expand5prime}`);
293
+ if (expand3prime > 0)
294
+ params.push(`expand_3prime=${expand3prime}`);
295
+ }
296
+ const path = `/sequence/id/${encodeURIComponent(id)}?${params.join('&')}`;
288
297
  const raw = await this.fetchWithRetry(path, ctx);
289
298
  return normalizeSequence(raw, type);
290
299
  }
@@ -1 +1 @@
1
- {"version":3,"file":"ensembl-service.js","sourceRoot":"","sources":["../../../src/services/ensembl/ensembl-service.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAIH,OAAO,EAAE,QAAQ,EAAE,kBAAkB,EAAE,eAAe,EAAE,MAAM,+BAA+B,CAAC;AAE9F,OAAO,EAAE,qBAAqB,EAAE,SAAS,EAAE,MAAM,8BAA8B,CAAC;AAChF,OAAO,EAAE,eAAe,EAAE,MAAM,2BAA2B,CAAC;AAsB5D,sBAAsB;AAEtB,SAAS,aAAa,CAAC,GAAkB;IACvC,MAAM,IAAI,GAAG,GAAG,CAAC,WAAW,EAAE,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,EAAE,IAAI,EAAE,CAAC;IACpD,OAAO;QACL,EAAE,EAAE,GAAG,CAAC,EAAE;QACV,GAAG,CAAC,GAAG,CAAC,OAAO,IAAI,EAAE,OAAO,EAAE,GAAG,CAAC,OAAO,EAAE,CAAC;QAC5C,GAAG,CAAC,GAAG,CAAC,YAAY,IAAI,EAAE,WAAW,EAAE,GAAG,CAAC,YAAY,EAAE,CAAC;QAC1D,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,WAAW,EAAE,IAAI,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;QACtC,GAAG,CAAC,GAAG,CAAC,OAAO,IAAI,EAAE,OAAO,EAAE,GAAG,CAAC,OAAO,EAAE,CAAC;QAC5C,GAAG,CAAC,GAAG,CAAC,eAAe,IAAI,EAAE,UAAU,EAAE,GAAG,CAAC,eAAe,EAAE,CAAC;QAC/D,GAAG,CAAC,OAAO,GAAG,CAAC,KAAK,KAAK,QAAQ,IAAI,EAAE,KAAK,EAAE,GAAG,CAAC,KAAK,EAAE,CAAC;QAC1D,GAAG,CAAC,OAAO,GAAG,CAAC,GAAG,KAAK,QAAQ,IAAI,EAAE,GAAG,EAAE,GAAG,CAAC,GAAG,EAAE,CAAC;QACpD,GAAG,CAAC,OAAO,GAAG,CAAC,MAAM,KAAK,QAAQ,IAAI,EAAE,MAAM,EAAE,GAAG,CAAC,MAAM,EAAE,CAAC;QAC7D,GAAG,CAAC,GAAG,CAAC,aAAa,IAAI,EAAE,YAAY,EAAE,GAAG,CAAC,aAAa,EAAE,CAAC;QAC7D,GAAG,CAAC,GAAG,CAAC,UAAU,IAAI;YACpB,WAAW,EAAE,GAAG,CAAC,UAAU,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC;gBACtC,EAAE,EAAE,CAAC,CAAC,EAAE;gBACR,GAAG,CAAC,CAAC,CAAC,YAAY,IAAI,EAAE,WAAW,EAAE,CAAC,CAAC,YAAY,EAAE,CAAC;gBACtD,GAAG,CAAC,CAAC,CAAC,OAAO,IAAI,EAAE,OAAO,EAAE,CAAC,CAAC,OAAO,EAAE,CAAC;gBACxC,WAAW,EAAE,CAAC,CAAC,YAAY,KAAK,CAAC;gBACjC,GAAG,CAAC,OAAO,CAAC,CAAC,KAAK,KAAK,QAAQ,IAAI,EAAE,KAAK,EAAE,CAAC,CAAC,KAAK,EAAE,CAAC;gBACtD,GAAG,CAAC,OAAO,CAAC,CAAC,GAAG,KAAK,QAAQ,IAAI,EAAE,GAAG,EAAE,CAAC,CAAC,GAAG,EAAE,CAAC;gBAChD,GAAG,CAAC,OAAO,CAAC,CAAC,MAAM,KAAK,QAAQ,IAAI,EAAE,MAAM,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC;gBACzD,GAAG,CAAC,OAAO,CAAC,CAAC,MAAM,KAAK,QAAQ,IAAI,EAAE,UAAU,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC;aAC9D,CAAC,CAAC;SACJ,CAAC;KACH,CAAC;AACJ,CAAC;AAED,SAAS,mBAAmB,CAAC,GAAwB;IACnD,OAAO;QACL,EAAE,EAAE,GAAG,CAAC,EAAE;QACV,GAAG,CAAC,GAAG,CAAC,MAAM,IAAI,EAAE,YAAY,EAAE,GAAG,CAAC,MAAM,EAAE,CAAC;QAC/C,GAAG,CAAC,GAAG,CAAC,YAAY,IAAI,EAAE,WAAW,EAAE,GAAG,CAAC,YAAY,EAAE,CAAC;QAC1D,GAAG,CAAC,GAAG,CAAC,OAAO,IAAI,EAAE,OAAO,EAAE,GAAG,CAAC,OAAO,EAAE,CAAC;QAC5C,WAAW,EAAE,GAAG,CAAC,YAAY,KAAK,CAAC;QACnC,GAAG,CAAC,GAAG,CAAC,OAAO,IAAI,EAAE,OAAO,EAAE,GAAG,CAAC,OAAO,EAAE,CAAC;QAC5C,GAAG,CAAC,GAAG,CAAC,eAAe,IAAI,EAAE,UAAU,EAAE,GAAG,CAAC,eAAe,EAAE,CAAC;QAC/D,GAAG,CAAC,OAAO,GAAG,CAAC,KAAK,KAAK,QAAQ,IAAI,EAAE,KAAK,EAAE,GAAG,CAAC,KAAK,EAAE,CAAC;QAC1D,GAAG,CAAC,OAAO,GAAG,CAAC,GAAG,KAAK,QAAQ,IAAI,EAAE,GAAG,EAAE,GAAG,CAAC,GAAG,EAAE,CAAC;QACpD,GAAG,CAAC,OAAO,GAAG,CAAC,MAAM,KAAK,QAAQ,IAAI,EAAE,MAAM,EAAE,GAAG,CAAC,MAAM,EAAE,CAAC;QAC7D,GAAG,CAAC,GAAG,CAAC,aAAa,IAAI,EAAE,YAAY,EAAE,GAAG,CAAC,aAAa,EAAE,CAAC;QAC7D,GAAG,CAAC,OAAO,GAAG,CAAC,MAAM,KAAK,QAAQ,IAAI,EAAE,UAAU,EAAE,GAAG,CAAC,MAAM,EAAE,CAAC;KAClE,CAAC;AACJ,CAAC;AAED,SAAS,iBAAiB,CAAC,GAAsB,EAAE,IAAY;IAC7D,OAAO;QACL,EAAE,EAAE,GAAG,CAAC,EAAE;QACV,IAAI;QACJ,GAAG,EAAE,GAAG,CAAC,GAAG;QACZ,MAAM,EAAE,GAAG,CAAC,GAAG,CAAC,MAAM;QACtB,GAAG,CAAC,GAAG,CAAC,IAAI,IAAI,EAAE,WAAW,EAAE,GAAG,CAAC,IAAI,EAAE,CAAC;KAC3C,CAAC;AACJ,CAAC;AAED,SAAS,uBAAuB,CAAC,GAAsB;IACrD,OAAO;QACL,GAAG,CAAC,GAAG,CAAC,EAAE,IAAI,EAAE,EAAE,EAAE,GAAG,CAAC,EAAE,EAAE,CAAC;QAC7B,GAAG,CAAC,GAAG,CAAC,aAAa,IAAI,EAAE,IAAI,EAAE,GAAG,CAAC,aAAa,EAAE,CAAC;QACrD,WAAW,EAAE,GAAG,CAAC,YAAY,IAAI,SAAS;QAC1C,GAAG,CAAC,GAAG,CAAC,OAAO,IAAI,EAAE,OAAO,EAAE,GAAG,CAAC,OAAO,EAAE,CAAC;QAC5C,UAAU,EAAE,GAAG,CAAC,eAAe,IAAI,EAAE;QACrC,KAAK,EAAE,GAAG,CAAC,KAAK,IAAI,CAAC;QACrB,GAAG,EAAE,GAAG,CAAC,GAAG,IAAI,CAAC;QACjB,GAAG,CAAC,OAAO,GAAG,CAAC,MAAM,KAAK,QAAQ,IAAI,EAAE,MAAM,EAAE,GAAG,CAAC,MAAM,EAAE,CAAC;QAC7D,GAAG,CAAC,GAAG,CAAC,WAAW,IAAI,EAAE,WAAW,EAAE,GAAG,CAAC,WAAW,EAAE,CAAC;QACxD,GAAG,CAAC,GAAG,CAAC,gBAAgB,IAAI,EAAE,eAAe,EAAE,GAAG,CAAC,gBAAgB,EAAE,CAAC;QACtE,GAAG,CAAC,GAAG,CAAC,qBAAqB,EAAE,MAAM,IAAI;YACvC,oBAAoB,EAAE,GAAG,CAAC,qBAAqB;SAChD,CAAC;QACF,4EAA4E;QAC5E,8EAA8E;QAC9E,iFAAiF;QACjF,GAAG,CAAC,GAAG,CAAC,YAAY,KAAK,MAAM,IAAI,GAAG,CAAC,MAAM,IAAI,EAAE,QAAQ,EAAE,GAAG,CAAC,MAAM,EAAE,CAAC;QAC1E,GAAG,CAAC,GAAG,CAAC,YAAY,KAAK,MAAM,IAAI,OAAO,GAAG,CAAC,IAAI,KAAK,QAAQ,IAAI,EAAE,IAAI,EAAE,GAAG,CAAC,IAAI,EAAE,CAAC;KACvF,CAAC;AACJ,CAAC;AAED,SAAS,YAAY,CAAC,GAAiB;IACrC,OAAO;QACL,GAAG,CAAC,GAAG,CAAC,KAAK,IAAI,EAAE,KAAK,EAAE,GAAG,CAAC,KAAK,EAAE,CAAC;QACtC,GAAG,CAAC,GAAG,CAAC,eAAe,IAAI,EAAE,UAAU,EAAE,GAAG,CAAC,eAAe,EAAE,CAAC;QAC/D,GAAG,CAAC,OAAO,GAAG,CAAC,KAAK,KAAK,QAAQ,IAAI,EAAE,KAAK,EAAE,GAAG,CAAC,KAAK,EAAE,CAAC;QAC1D,GAAG,CAAC,OAAO,GAAG,CAAC,GAAG,KAAK,QAAQ,IAAI,EAAE,GAAG,EAAE,GAAG,CAAC,GAAG,EAAE,CAAC;QACpD,GAAG,CAAC,GAAG,CAAC,aAAa,IAAI,EAAE,YAAY,EAAE,GAAG,CAAC,aAAa,EAAE,CAAC;QAC7D,GAAG,CAAC,GAAG,CAAC,uBAAuB,IAAI;YACjC,qBAAqB,EAAE,GAAG,CAAC,uBAAuB;SACnD,CAAC;QACF,sBAAsB,EAAE,CAAC,GAAG,CAAC,uBAAuB,IAAI,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,CAAC;YACvE,GAAG,CAAC,EAAE,CAAC,aAAa,IAAI,EAAE,YAAY,EAAE,EAAE,CAAC,aAAa,EAAE,CAAC;YAC3D,GAAG,CAAC,EAAE,CAAC,OAAO,IAAI,EAAE,MAAM,EAAE,EAAE,CAAC,OAAO,EAAE,CAAC;YACzC,GAAG,CAAC,EAAE,CAAC,WAAW,IAAI,EAAE,UAAU,EAAE,EAAE,CAAC,WAAW,EAAE,CAAC;YACrD,gBAAgB,EAAE,EAAE,CAAC,iBAAiB,IAAI,EAAE;YAC5C,GAAG,CAAC,EAAE,CAAC,MAAM,IAAI,EAAE,MAAM,EAAE,EAAE,CAAC,MAAM,EAAE,CAAC;YACvC,GAAG,CAAC,EAAE,CAAC,OAAO,IAAI,EAAE,OAAO,EAAE,EAAE,CAAC,OAAO,EAAE,CAAC;YAC1C,GAAG,CAAC,EAAE,CAAC,KAAK,IAAI,EAAE,KAAK,EAAE,EAAE,CAAC,KAAK,EAAE,CAAC;YACpC,GAAG,CAAC,EAAE,CAAC,KAAK,IAAI,EAAE,KAAK,EAAE,EAAE,CAAC,KAAK,EAAE,CAAC;YACpC,GAAG,CAAC,EAAE,CAAC,WAAW,IAAI,EAAE,UAAU,EAAE,EAAE,CAAC,WAAW,EAAE,CAAC;YACrD,GAAG,CAAC,EAAE,CAAC,IAAI,IAAI,EAAE,IAAI,EAAE,EAAE,CAAC,IAAI,EAAE,CAAC;YACjC,GAAG,CAAC,EAAE,CAAC,QAAQ,IAAI,EAAE,QAAQ,EAAE,EAAE,CAAC,QAAQ,EAAE,CAAC;SAC9C,CAAC,CAAC;QACH,iBAAiB,EAAE,CAAC,GAAG,CAAC,kBAAkB,IAAI,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,CAAC;YAC7D,GAAG,CAAC,EAAE,CAAC,EAAE,IAAI,EAAE,EAAE,EAAE,EAAE,CAAC,EAAE,EAAE,CAAC;YAC3B,GAAG,CAAC,EAAE,CAAC,aAAa,IAAI,EAAE,YAAY,EAAE,EAAE,CAAC,aAAa,EAAE,CAAC;YAC3D,GAAG,CAAC,EAAE,CAAC,qBAAqB,EAAE,MAAM,IAAI;gBACtC,oBAAoB,EAAE,EAAE,CAAC,qBAAqB;aAC/C,CAAC;YACF,GAAG,CAAC,EAAE,CAAC,MAAM,EAAE,MAAM,IAAI,EAAE,MAAM,EAAE,EAAE,CAAC,MAAM,EAAE,CAAC;SAChD,CAAC,CAAC;KACJ,CAAC;AACJ,CAAC;AAED,SAAS,iBAAiB,CAAC,GAAwB,EAAE,QAAgB;IACnE,MAAM,SAAS,GAAG,GAAG,CAAC,IAAI,EAAE,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,EAAE,KAAK,QAAQ,CAAC,IAAI,GAAG,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC,CAAC;IAC5E,MAAM,QAAQ,GAAoB,CAAC,SAAS,EAAE,UAAU,IAAI,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC;QAC1E,QAAQ,EAAE,CAAC,CAAC,MAAM,EAAE,EAAE,IAAI,CAAC,CAAC,EAAE;QAC9B,GAAG,CAAC,CAAC,CAAC,MAAM,EAAE,OAAO;YACnB,CAAC,CAAC,EAAE,aAAa,EAAE,CAAC,CAAC,MAAM,CAAC,OAAO,EAAE;YACrC,CAAC,CAAC,CAAC,CAAC,OAAO;gBACT,CAAC,CAAC,EAAE,aAAa,EAAE,CAAC,CAAC,OAAO,EAAE;gBAC9B,CAAC,CAAC,EAAE,CAAC;QACT,GAAG,CAAC,CAAC,CAAC,IAAI,IAAI,EAAE,IAAI,EAAE,CAAC,CAAC,IAAI,EAAE,CAAC;QAC/B,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,EAAE,OAAO,IAAI,CAAC,CAAC,OAAO,CAAC,KAAK,QAAQ,IAAI;YAC1D,MAAM,EAAE,CAAC,CAAC,MAAM,EAAE,OAAO,IAAI,CAAC,CAAC,OAAO;SACvC,CAAC;QACF,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,EAAE,QAAQ,IAAI,CAAC,CAAC,QAAQ,CAAC,KAAK,QAAQ,IAAI;YAC5D,OAAO,EAAE,CAAC,CAAC,MAAM,EAAE,QAAQ,IAAI,CAAC,CAAC,QAAQ;SAC1C,CAAC;QACF,GAAG,CAAC,CAAC,CAAC,cAAc,IAAI,EAAE,aAAa,EAAE,CAAC,CAAC,cAAc,EAAE,CAAC;KAC7D,CAAC,CAAC,CAAC;IACJ,gFAAgF;IAChF,2EAA2E;IAC3E,OAAO;QACL,QAAQ;QACR,GAAG,CAAC,SAAS,EAAE,EAAE,IAAI,EAAE,eAAe,EAAE,SAAS,CAAC,EAAE,EAAE,CAAC;KACxD,CAAC;AACJ,CAAC;AAED,SAAS,aAAa,CAAC,GAAiB;IACtC,OAAO;QACL,GAAG,CAAC,GAAG,CAAC,MAAM,IAAI,EAAE,MAAM,EAAE,GAAG,CAAC,MAAM,EAAE,CAAC;QACzC,GAAG,CAAC,GAAG,CAAC,eAAe,IAAI,EAAE,aAAa,EAAE,GAAG,CAAC,eAAe,EAAE,CAAC;QAClE,GAAG,CAAC,GAAG,CAAC,UAAU,IAAI,EAAE,SAAS,EAAE,GAAG,CAAC,UAAU,EAAE,CAAC;QACpD,GAAG,CAAC,GAAG,CAAC,UAAU,IAAI,EAAE,SAAS,EAAE,GAAG,CAAC,UAAU,EAAE,CAAC;QACpD,GAAG,CAAC,GAAG,CAAC,WAAW,IAAI,EAAE,WAAW,EAAE,GAAG,CAAC,WAAW,EAAE,CAAC;KACzD,CAAC;AACJ,CAAC;AAED,SAAS,gBAAgB,CAAC,GAAuB;IAC/C,OAAO,CAAC,GAAG,CAAC,OAAO,IAAI,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC;QACrC,IAAI,EAAE,CAAC,CAAC,IAAI,IAAI,EAAE;QAClB,GAAG,CAAC,CAAC,CAAC,YAAY,IAAI,EAAE,WAAW,EAAE,CAAC,CAAC,YAAY,EAAE,CAAC;QACtD,GAAG,CAAC,CAAC,CAAC,WAAW,IAAI,EAAE,UAAU,EAAE,CAAC,CAAC,WAAW,EAAE,CAAC;QACnD,GAAG,CAAC,CAAC,CAAC,QAAQ,IAAI,EAAE,OAAO,EAAE,CAAC,CAAC,QAAQ,EAAE,CAAC;QAC1C,GAAG,CAAC,CAAC,CAAC,QAAQ,IAAI,EAAE,QAAQ,EAAE,CAAC,CAAC,QAAQ,EAAE,CAAC;QAC3C,GAAG,CAAC,CAAC,CAAC,QAAQ,IAAI,EAAE,QAAQ,EAAE,CAAC,CAAC,QAAQ,EAAE,CAAC;KAC5C,CAAC,CAAC,CAAC;AACN,CAAC;AAED,kBAAkB;AAElB,MAAM,OAAO,cAAc;IACR,OAAO,CAAS;IAEjC,YAAY,OAAkB,EAAE,QAAwB;QACtD,IAAI,CAAC,OAAO,GAAG,eAAe,EAAE,CAAC,OAAO,CAAC;IAC3C,CAAC;IAED,qBAAqB;IAEb,KAAK,CAAC,SAAS,CACrB,IAAY,EACZ,GAAY,EACZ,OAIC;QAED,MAAM,GAAG,GAAG,GAAG,IAAI,CAAC,OAAO,GAAG,IAAI,EAAE,CAAC;QACrC,MAAM,MAAM,GAAG,OAAO,EAAE,MAAM,IAAI,KAAK,CAAC;QACxC,MAAM,YAAY,GAAgB;YAChC,MAAM;YACN,OAAO,EAAE;gBACP,MAAM,EAAE,kBAAkB;gBAC1B,cAAc,EAAE,kBAAkB;aACnC;YACD,MAAM,EAAE,OAAO,EAAE,MAAM,IAAI,GAAG,CAAC,MAAM;SACtC,CAAC;QACF,IAAI,OAAO,EAAE,IAAI,KAAK,SAAS,EAAE,CAAC;YAChC,YAAY,CAAC,IAAI,GAAG,IAAI,CAAC,SAAS,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC;QACnD,CAAC;QAED,GAAG,CAAC,GAAG,CAAC,KAAK,CAAC,iBAAiB,EAAE,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,CAAC;QAElD,MAAM,QAAQ,GAAG,MAAM,KAAK,CAAC,GAAG,EAAE,YAAY,CAAC,CAAC;QAEhD,IAAI,QAAQ,CAAC,MAAM,KAAK,GAAG,EAAE,CAAC;YAC5B,MAAM,UAAU,GAAG,QAAQ,CAAC,OAAO,CAAC,GAAG,CAAC,aAAa,CAAC,CAAC;YACvD,MAAM,kBAAkB,CACtB,+BAA+B,UAAU,CAAC,CAAC,CAAC,gBAAgB,UAAU,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,EACjF,EAAE,UAAU,EAAE,UAAU,CAAC,CAAC,CAAC,MAAM,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC,SAAS,EAAE,CAC5D,CAAC;QACJ,CAAC;QAED,MAAM,IAAI,GAAG,MAAM,QAAQ,CAAC,IAAI,EAAE,CAAC;QAEnC,0BAA0B;QAC1B,IAAI,mCAAmC,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC;YACnD,MAAM,kBAAkB,CACtB,sEAAsE,CACvE,CAAC;QACJ,CAAC;QAED,IAAI,MAAe,CAAC;QACpB,IAAI,CAAC;YACH,MAAM,GAAG,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;QAC5B,CAAC;QAAC,MAAM,CAAC;YACP,MAAM,kBAAkB,CAAC,4CAA4C,EAAE;gBACrE,MAAM,EAAE,QAAQ,CAAC,MAAM;aACxB,CAAC,CAAC;QACL,CAAC;QAED,2CAA2C;QAC3C,IACE,OAAO,MAAM,KAAK,QAAQ;YAC1B,MAAM,KAAK,IAAI;YACf,OAAO,IAAI,MAAM;YACjB,OAAQ,MAA+B,CAAC,KAAK,KAAK,QAAQ,EAC1D,CAAC;YACD,MAAM,GAAG,GAAI,MAA+B,CAAC,KAAK,CAAC;YACnD,oCAAoC;YACpC,IAAI,kDAAkD,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC;gBACjE,MAAM,QAAQ,CAAC,GAAG,CAAC,CAAC;YACtB,CAAC;YACD,IAAI,6CAA6C,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC;gBAC5D,MAAM,eAAe,CAAC,GAAG,CAAC,CAAC;YAC7B,CAAC;YACD,8DAA8D;YAC9D,MAAM,QAAQ,CAAC,GAAG,CAAC,CAAC;QACtB,CAAC;QAED,IAAI,CAAC,QAAQ,CAAC,EAAE,EAAE,CAAC;YACjB,MAAM,kBAAkB,CAAC,6BAA6B,QAAQ,CAAC,MAAM,GAAG,EAAE;gBACxE,MAAM,EAAE,QAAQ,CAAC,MAAM;aACxB,CAAC,CAAC;QACL,CAAC;QAED,OAAO,MAAW,CAAC;IACrB,CAAC;IAED,4BAA4B;IAEpB,cAAc,CACpB,IAAY,EACZ,GAAY,EACZ,OAGC;QAED,MAAM,SAAS,GAAG,wBAAwB,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC;QAC/D,MAAM,MAAM,GAAG,qBAAqB,CAAC,oBAAoB,CAAC;YACxD,SAAS;YACT,aAAa,EAAE,EAAE,SAAS,EAAE,GAAG,CAAC,SAAS,EAAE;SAC5C,CAAC,CAAC;QACH,OAAO,SAAS,CAAC,GAAG,EAAE,CAAC,IAAI,CAAC,SAAS,CAAI,IAAI,EAAE,GAAG,EAAE,OAAO,CAAC,EAAE;YAC5D,SAAS;YACT,OAAO,EAAE,MAAM;YACf,WAAW,EAAE,IAAI;YACjB,MAAM,EAAE,GAAG,CAAC,MAAM;SACnB,CAAC,CAAC;IACL,CAAC;IAED,sBAAsB;IAEtB,KAAK,CAAC,UAAU,CACd,MAAc,EACd,OAAe,EACf,iBAA0B,EAC1B,GAAY;QAEZ,MAAM,MAAM,GAAG,iBAAiB,CAAC,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,EAAE,CAAC;QACpD,MAAM,IAAI,GAAG,kBAAkB,kBAAkB,CAAC,OAAO,CAAC,IAAI,kBAAkB,CAAC,MAAM,CAAC,GAAG,MAAM,EAAE,CAAC;QACpG,MAAM,GAAG,GAAG,MAAM,IAAI,CAAC,cAAc,CAAgB,IAAI,EAAE,GAAG,CAAC,CAAC;QAChE,OAAO,aAAa,CAAC,GAAG,CAAC,CAAC;IAC5B,CAAC;IAED,KAAK,CAAC,cAAc,CAAC,EAAU,EAAE,iBAA0B,EAAE,GAAY;QACvE,MAAM,MAAM,GAAG,iBAAiB,CAAC,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,EAAE,CAAC;QACpD,MAAM,IAAI,GAAG,cAAc,kBAAkB,CAAC,EAAE,CAAC,GAAG,MAAM,EAAE,CAAC;QAC7D,MAAM,GAAG,GAAG,MAAM,IAAI,CAAC,cAAc,CAAgB,IAAI,EAAE,GAAG,CAAC,CAAC;QAChE,OAAO,aAAa,CAAC,GAAG,CAAC,CAAC;IAC5B,CAAC;IAED,KAAK,CAAC,gBAAgB,CACpB,GAAa,EACb,iBAA0B,EAC1B,GAAY;QAEZ,MAAM,IAAI,GAA4B,EAAE,GAAG,EAAE,CAAC;QAC9C,IAAI,iBAAiB;YAAE,IAAI,CAAC,MAAM,GAAG,CAAC,CAAC;QACvC,MAAM,GAAG,GAAG,MAAM,IAAI,CAAC,cAAc,CAAuC,YAAY,EAAE,GAAG,EAAE;YAC7F,MAAM,EAAE,MAAM;YACd,IAAI;SACL,CAAC,CAAC;QACH,MAAM,MAAM,GAAG,IAAI,GAAG,EAAsB,CAAC;QAC7C,KAAK,MAAM,CAAC,CAAC,EAAE,CAAC,CAAC,IAAI,MAAM,CAAC,OAAO,CAAC,GAAG,CAAC,EAAE,CAAC;YACzC,IAAI,CAAC;gBAAE,MAAM,CAAC,GAAG,CAAC,CAAC,EAAE,aAAa,CAAC,CAAC,CAAC,CAAC,CAAC;QACzC,CAAC;QACD,OAAO,MAAM,CAAC;IAChB,CAAC;IAED,KAAK,CAAC,kBAAkB,CACtB,OAAiB,EACjB,OAAe,EACf,iBAA0B,EAC1B,GAAY;QAEZ,MAAM,IAAI,GAA4B,EAAE,OAAO,EAAE,CAAC;QAClD,IAAI,iBAAiB;YAAE,IAAI,CAAC,MAAM,GAAG,CAAC,CAAC;QACvC,MAAM,GAAG,GAAG,MAAM,IAAI,CAAC,cAAc,CACnC,kBAAkB,kBAAkB,CAAC,OAAO,CAAC,EAAE,EAC/C,GAAG,EACH,EAAE,MAAM,EAAE,MAAM,EAAE,IAAI,EAAE,CACzB,CAAC;QACF,MAAM,MAAM,GAAG,IAAI,GAAG,EAAsB,CAAC;QAC7C,KAAK,MAAM,CAAC,CAAC,EAAE,CAAC,CAAC,IAAI,MAAM,CAAC,OAAO,CAAC,GAAG,CAAC,EAAE,CAAC;YACzC,IAAI,CAAC;gBAAE,MAAM,CAAC,GAAG,CAAC,CAAC,EAAE,aAAa,CAAC,CAAC,CAAC,CAAC,CAAC;QACzC,CAAC;QACD,OAAO,MAAM,CAAC;IAChB,CAAC;IAED,4BAA4B;IAE5B,KAAK,CAAC,gBAAgB,CAAC,EAAU,EAAE,GAAY;QAC7C,MAAM,IAAI,GAAG,cAAc,kBAAkB,CAAC,EAAE,CAAC,EAAE,CAAC;QACpD,MAAM,GAAG,GAAG,MAAM,IAAI,CAAC,cAAc,CAAsB,IAAI,EAAE,GAAG,CAAC,CAAC;QACtE,OAAO,mBAAmB,CAAC,GAAG,CAAC,CAAC;IAClC,CAAC;IAED,mBAAmB;IAEnB,KAAK,CAAC,eAAe,CAAC,EAAU,EAAE,IAAY,EAAE,GAAY;QAC1D,MAAM,IAAI,GAAG,gBAAgB,kBAAkB,CAAC,EAAE,CAAC,SAAS,kBAAkB,CAAC,IAAI,CAAC,EAAE,CAAC;QACvF,MAAM,GAAG,GAAG,MAAM,IAAI,CAAC,cAAc,CAAoB,IAAI,EAAE,GAAG,CAAC,CAAC;QACpE,OAAO,iBAAiB,CAAC,GAAG,EAAE,IAAI,CAAC,CAAC;IACtC,CAAC;IAED,KAAK,CAAC,mBAAmB,CACvB,OAAe,EACf,MAAc,EACd,YAAoB,EACpB,YAAoB,EACpB,GAAY;QAEZ,IAAI,IAAI,GAAG,oBAAoB,kBAAkB,CAAC,OAAO,CAAC,IAAI,kBAAkB,CAAC,MAAM,CAAC,EAAE,CAAC;QAC3F,MAAM,MAAM,GAAa,EAAE,CAAC;QAC5B,IAAI,YAAY,GAAG,CAAC;YAAE,MAAM,CAAC,IAAI,CAAC,iBAAiB,YAAY,EAAE,CAAC,CAAC;QACnE,IAAI,YAAY,GAAG,CAAC;YAAE,MAAM,CAAC,IAAI,CAAC,iBAAiB,YAAY,EAAE,CAAC,CAAC;QACnE,IAAI,MAAM,CAAC,MAAM,GAAG,CAAC;YAAE,IAAI,IAAI,IAAI,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC;QACtD,MAAM,GAAG,GAAG,MAAM,IAAI,CAAC,cAAc,CAAoB,IAAI,EAAE,GAAG,CAAC,CAAC;QACpE,OAAO,iBAAiB,CAAC,GAAG,EAAE,SAAS,CAAC,CAAC;IAC3C,CAAC;IAED,yBAAyB;IAEzB,KAAK,CAAC,WAAW,CACf,OAAe,EACf,MAAc,EACd,QAAkB,EAClB,OAA2B,EAC3B,GAAY;QAEZ,MAAM,aAAa,GAAG,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,WAAW,kBAAkB,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;QACxF,IAAI,IAAI,GAAG,mBAAmB,kBAAkB,CAAC,OAAO,CAAC,IAAI,kBAAkB,CAAC,MAAM,CAAC,IAAI,aAAa,EAAE,CAAC;QAC3G,IAAI,OAAO;YAAE,IAAI,IAAI,YAAY,kBAAkB,CAAC,OAAO,CAAC,EAAE,CAAC;QAC/D,MAAM,GAAG,GAAG,MAAM,IAAI,CAAC,cAAc,CAAsB,IAAI,EAAE,GAAG,CAAC,CAAC;QACtE,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,GAAG,CAAC;YAAE,OAAO,EAAE,CAAC;QACnC,OAAO,GAAG,CAAC,GAAG,CAAC,uBAAuB,CAAC,CAAC;IAC1C,CAAC;IAED,cAAc;IAEd,KAAK,CAAC,kBAAkB,CAAC,QAAgB,EAAE,OAAe,EAAE,GAAY;QACtE,MAAM,IAAI,GAAG,QAAQ,kBAAkB,CAAC,OAAO,CAAC,SAAS,kBAAkB,CAAC,QAAQ,CAAC,EAAE,CAAC;QACxF,MAAM,GAAG,GAAG,MAAM,IAAI,CAAC,cAAc,CAAiB,IAAI,EAAE,GAAG,CAAC,CAAC;QACjE,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,GAAG,CAAC;YAAE,OAAO,EAAE,CAAC;QACnC,OAAO,GAAG,CAAC,GAAG,CAAC,YAAY,CAAC,CAAC;IAC/B,CAAC;IAED,KAAK,CAAC,oBAAoB,CACxB,GAAW,EACX,KAAa,EACb,GAAW,EACX,MAAc,EACd,MAAc,EACd,OAAe,EACf,GAAY;QAEZ,MAAM,YAAY,GAAG,GAAG,kBAAkB,CAAC,GAAG,GAAG,IAAI,KAAK,IAAI,GAAG,IAAI,MAAM,EAAE,CAAC,IAAI,kBAAkB,CAAC,MAAM,CAAC,EAAE,CAAC;QAC/G,MAAM,IAAI,GAAG,QAAQ,kBAAkB,CAAC,OAAO,CAAC,WAAW,YAAY,EAAE,CAAC;QAC1E,MAAM,GAAG,GAAG,MAAM,IAAI,CAAC,cAAc,CAAiB,IAAI,EAAE,GAAG,CAAC,CAAC;QACjE,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,GAAG,CAAC;YAAE,OAAO,EAAE,CAAC;QACnC,OAAO,GAAG,CAAC,GAAG,CAAC,YAAY,CAAC,CAAC;IAC/B,CAAC;IAED,KAAK,CAAC,gBAAgB,CAAC,EAAU,EAAE,OAAe,EAAE,GAAY;QAC9D,MAAM,IAAI,GAAG,QAAQ,kBAAkB,CAAC,OAAO,CAAC,OAAO,kBAAkB,CAAC,EAAE,CAAC,EAAE,CAAC;QAChF,MAAM,GAAG,GAAG,MAAM,IAAI,CAAC,cAAc,CAAiB,IAAI,EAAE,GAAG,CAAC,CAAC;QACjE,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,GAAG,CAAC;YAAE,OAAO,EAAE,CAAC;QACnC,OAAO,GAAG,CAAC,GAAG,CAAC,YAAY,CAAC,CAAC;IAC/B,CAAC;IAED,mBAAmB;IAEnB,KAAK,CAAC,mBAAmB,CACvB,MAAc,EACd,OAAe,EACf,IAAY,EACZ,aAAiC,EACjC,GAAY;QAEZ,IAAI,IAAI,GAAG,oBAAoB,kBAAkB,CAAC,OAAO,CAAC,IAAI,kBAAkB,CAAC,MAAM,CAAC,SAAS,kBAAkB,CAAC,IAAI,CAAC,EAAE,CAAC;QAC5H,IAAI,aAAa;YAAE,IAAI,IAAI,mBAAmB,kBAAkB,CAAC,aAAa,CAAC,EAAE,CAAC;QAClF,MAAM,GAAG,GAAG,MAAM,IAAI,CAAC,cAAc,CAAsB,IAAI,EAAE,GAAG,CAAC,CAAC;QACtE,OAAO,iBAAiB,CAAC,GAAG,EAAE,MAAM,CAAC,CAAC;IACxC,CAAC;IAED,KAAK,CAAC,eAAe,CACnB,EAAU,EACV,OAAe,EACf,IAAY,EACZ,aAAiC,EACjC,GAAY;QAEZ,IAAI,IAAI,GAAG,gBAAgB,kBAAkB,CAAC,OAAO,CAAC,IAAI,kBAAkB,CAAC,EAAE,CAAC,SAAS,kBAAkB,CAAC,IAAI,CAAC,EAAE,CAAC;QACpH,IAAI,aAAa;YAAE,IAAI,IAAI,mBAAmB,kBAAkB,CAAC,aAAa,CAAC,EAAE,CAAC;QAClF,MAAM,GAAG,GAAG,MAAM,IAAI,CAAC,cAAc,CAAsB,IAAI,EAAE,GAAG,CAAC,CAAC;QACtE,OAAO,iBAAiB,CAAC,GAAG,EAAE,EAAE,CAAC,CAAC;IACpC,CAAC;IAED,gBAAgB;IAEhB,KAAK,CAAC,YAAY,CAAC,EAAU,EAAE,MAA0B,EAAE,GAAY;QACrE,IAAI,IAAI,GAAG,aAAa,kBAAkB,CAAC,EAAE,CAAC,EAAE,CAAC;QACjD,IAAI,MAAM;YAAE,IAAI,IAAI,gBAAgB,kBAAkB,CAAC,MAAM,CAAC,EAAE,CAAC;QACjE,MAAM,GAAG,GAAG,MAAM,IAAI,CAAC,cAAc,CAAiB,IAAI,EAAE,GAAG,CAAC,CAAC;QACjE,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,GAAG,CAAC;YAAE,OAAO,EAAE,CAAC;QACnC,OAAO,GAAG,CAAC,GAAG,CAAC,aAAa,CAAC,CAAC;IAChC,CAAC;IAED,kBAAkB;IAElB,KAAK,CAAC,WAAW,CAAC,QAA4B,EAAE,GAAY;QAC1D,IAAI,IAAI,GAAG,eAAe,CAAC;QAC3B,IAAI,QAAQ;YAAE,IAAI,IAAI,aAAa,kBAAkB,CAAC,QAAQ,CAAC,EAAE,CAAC;QAClE,MAAM,GAAG,GAAG,MAAM,IAAI,CAAC,cAAc,CAAqB,IAAI,EAAE,GAAG,CAAC,CAAC;QACrE,OAAO,gBAAgB,CAAC,GAAG,CAAC,CAAC;IAC/B,CAAC;CACF;AAED,gCAAgC;AAEhC,IAAI,QAAoC,CAAC;AAEzC,MAAM,UAAU,kBAAkB,CAAC,MAAiB,EAAE,OAAuB;IAC3E,QAAQ,GAAG,IAAI,cAAc,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;AACjD,CAAC;AAED,MAAM,UAAU,iBAAiB;IAC/B,IAAI,CAAC,QAAQ,EAAE,CAAC;QACd,MAAM,IAAI,KAAK,CAAC,uEAAuE,CAAC,CAAC;IAC3F,CAAC;IACD,OAAO,QAAQ,CAAC;AAClB,CAAC"}
1
+ {"version":3,"file":"ensembl-service.js","sourceRoot":"","sources":["../../../src/services/ensembl/ensembl-service.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAIH,OAAO,EAAE,QAAQ,EAAE,kBAAkB,EAAE,eAAe,EAAE,MAAM,+BAA+B,CAAC;AAE9F,OAAO,EAAE,qBAAqB,EAAE,SAAS,EAAE,MAAM,8BAA8B,CAAC;AAChF,OAAO,EAAE,eAAe,EAAE,MAAM,2BAA2B,CAAC;AAsB5D,sBAAsB;AAEtB,SAAS,aAAa,CAAC,GAAkB;IACvC,MAAM,IAAI,GAAG,GAAG,CAAC,WAAW,EAAE,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,EAAE,IAAI,EAAE,CAAC;IACpD,OAAO;QACL,EAAE,EAAE,GAAG,CAAC,EAAE;QACV,GAAG,CAAC,GAAG,CAAC,OAAO,IAAI,EAAE,OAAO,EAAE,GAAG,CAAC,OAAO,EAAE,CAAC;QAC5C,GAAG,CAAC,GAAG,CAAC,YAAY,IAAI,EAAE,WAAW,EAAE,GAAG,CAAC,YAAY,EAAE,CAAC;QAC1D,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,WAAW,EAAE,IAAI,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;QACtC,GAAG,CAAC,GAAG,CAAC,OAAO,IAAI,EAAE,OAAO,EAAE,GAAG,CAAC,OAAO,EAAE,CAAC;QAC5C,GAAG,CAAC,GAAG,CAAC,eAAe,IAAI,EAAE,UAAU,EAAE,GAAG,CAAC,eAAe,EAAE,CAAC;QAC/D,GAAG,CAAC,OAAO,GAAG,CAAC,KAAK,KAAK,QAAQ,IAAI,EAAE,KAAK,EAAE,GAAG,CAAC,KAAK,EAAE,CAAC;QAC1D,GAAG,CAAC,OAAO,GAAG,CAAC,GAAG,KAAK,QAAQ,IAAI,EAAE,GAAG,EAAE,GAAG,CAAC,GAAG,EAAE,CAAC;QACpD,GAAG,CAAC,OAAO,GAAG,CAAC,MAAM,KAAK,QAAQ,IAAI,EAAE,MAAM,EAAE,GAAG,CAAC,MAAM,EAAE,CAAC;QAC7D,GAAG,CAAC,GAAG,CAAC,aAAa,IAAI,EAAE,YAAY,EAAE,GAAG,CAAC,aAAa,EAAE,CAAC;QAC7D,GAAG,CAAC,GAAG,CAAC,UAAU,IAAI;YACpB,WAAW,EAAE,GAAG,CAAC,UAAU,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC;gBACtC,EAAE,EAAE,CAAC,CAAC,EAAE;gBACR,GAAG,CAAC,CAAC,CAAC,YAAY,IAAI,EAAE,WAAW,EAAE,CAAC,CAAC,YAAY,EAAE,CAAC;gBACtD,GAAG,CAAC,CAAC,CAAC,OAAO,IAAI,EAAE,OAAO,EAAE,CAAC,CAAC,OAAO,EAAE,CAAC;gBACxC,WAAW,EAAE,CAAC,CAAC,YAAY,KAAK,CAAC;gBACjC,GAAG,CAAC,OAAO,CAAC,CAAC,KAAK,KAAK,QAAQ,IAAI,EAAE,KAAK,EAAE,CAAC,CAAC,KAAK,EAAE,CAAC;gBACtD,GAAG,CAAC,OAAO,CAAC,CAAC,GAAG,KAAK,QAAQ,IAAI,EAAE,GAAG,EAAE,CAAC,CAAC,GAAG,EAAE,CAAC;gBAChD,GAAG,CAAC,OAAO,CAAC,CAAC,MAAM,KAAK,QAAQ,IAAI,EAAE,MAAM,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC;gBACzD,GAAG,CAAC,OAAO,CAAC,CAAC,MAAM,KAAK,QAAQ,IAAI,EAAE,UAAU,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC;aAC9D,CAAC,CAAC;SACJ,CAAC;KACH,CAAC;AACJ,CAAC;AAED,SAAS,mBAAmB,CAAC,GAAwB;IACnD,OAAO;QACL,EAAE,EAAE,GAAG,CAAC,EAAE;QACV,GAAG,CAAC,GAAG,CAAC,MAAM,IAAI,EAAE,YAAY,EAAE,GAAG,CAAC,MAAM,EAAE,CAAC;QAC/C,GAAG,CAAC,GAAG,CAAC,YAAY,IAAI,EAAE,WAAW,EAAE,GAAG,CAAC,YAAY,EAAE,CAAC;QAC1D,GAAG,CAAC,GAAG,CAAC,OAAO,IAAI,EAAE,OAAO,EAAE,GAAG,CAAC,OAAO,EAAE,CAAC;QAC5C,WAAW,EAAE,GAAG,CAAC,YAAY,KAAK,CAAC;QACnC,GAAG,CAAC,GAAG,CAAC,OAAO,IAAI,EAAE,OAAO,EAAE,GAAG,CAAC,OAAO,EAAE,CAAC;QAC5C,GAAG,CAAC,GAAG,CAAC,eAAe,IAAI,EAAE,UAAU,EAAE,GAAG,CAAC,eAAe,EAAE,CAAC;QAC/D,GAAG,CAAC,OAAO,GAAG,CAAC,KAAK,KAAK,QAAQ,IAAI,EAAE,KAAK,EAAE,GAAG,CAAC,KAAK,EAAE,CAAC;QAC1D,GAAG,CAAC,OAAO,GAAG,CAAC,GAAG,KAAK,QAAQ,IAAI,EAAE,GAAG,EAAE,GAAG,CAAC,GAAG,EAAE,CAAC;QACpD,GAAG,CAAC,OAAO,GAAG,CAAC,MAAM,KAAK,QAAQ,IAAI,EAAE,MAAM,EAAE,GAAG,CAAC,MAAM,EAAE,CAAC;QAC7D,GAAG,CAAC,GAAG,CAAC,aAAa,IAAI,EAAE,YAAY,EAAE,GAAG,CAAC,aAAa,EAAE,CAAC;QAC7D,GAAG,CAAC,OAAO,GAAG,CAAC,MAAM,KAAK,QAAQ,IAAI,EAAE,UAAU,EAAE,GAAG,CAAC,MAAM,EAAE,CAAC;KAClE,CAAC;AACJ,CAAC;AAED,SAAS,iBAAiB,CAAC,GAAsB,EAAE,IAAY;IAC7D,OAAO;QACL,EAAE,EAAE,GAAG,CAAC,EAAE;QACV,IAAI;QACJ,GAAG,EAAE,GAAG,CAAC,GAAG;QACZ,MAAM,EAAE,GAAG,CAAC,GAAG,CAAC,MAAM;QACtB,GAAG,CAAC,GAAG,CAAC,IAAI,IAAI,EAAE,WAAW,EAAE,GAAG,CAAC,IAAI,EAAE,CAAC;KAC3C,CAAC;AACJ,CAAC;AAED,SAAS,uBAAuB,CAAC,GAAsB;IACrD,OAAO;QACL,GAAG,CAAC,GAAG,CAAC,EAAE,IAAI,EAAE,EAAE,EAAE,GAAG,CAAC,EAAE,EAAE,CAAC;QAC7B,GAAG,CAAC,GAAG,CAAC,aAAa,IAAI,EAAE,IAAI,EAAE,GAAG,CAAC,aAAa,EAAE,CAAC;QACrD,WAAW,EAAE,GAAG,CAAC,YAAY,IAAI,SAAS;QAC1C,GAAG,CAAC,GAAG,CAAC,OAAO,IAAI,EAAE,OAAO,EAAE,GAAG,CAAC,OAAO,EAAE,CAAC;QAC5C,UAAU,EAAE,GAAG,CAAC,eAAe,IAAI,EAAE;QACrC,KAAK,EAAE,GAAG,CAAC,KAAK,IAAI,CAAC;QACrB,GAAG,EAAE,GAAG,CAAC,GAAG,IAAI,CAAC;QACjB,GAAG,CAAC,OAAO,GAAG,CAAC,MAAM,KAAK,QAAQ,IAAI,EAAE,MAAM,EAAE,GAAG,CAAC,MAAM,EAAE,CAAC;QAC7D,GAAG,CAAC,GAAG,CAAC,WAAW,IAAI,EAAE,WAAW,EAAE,GAAG,CAAC,WAAW,EAAE,CAAC;QACxD,GAAG,CAAC,GAAG,CAAC,gBAAgB,IAAI,EAAE,eAAe,EAAE,GAAG,CAAC,gBAAgB,EAAE,CAAC;QACtE,GAAG,CAAC,GAAG,CAAC,qBAAqB,EAAE,MAAM,IAAI;YACvC,oBAAoB,EAAE,GAAG,CAAC,qBAAqB;SAChD,CAAC;QACF,4EAA4E;QAC5E,8EAA8E;QAC9E,iFAAiF;QACjF,GAAG,CAAC,GAAG,CAAC,YAAY,KAAK,MAAM,IAAI,GAAG,CAAC,MAAM,IAAI,EAAE,QAAQ,EAAE,GAAG,CAAC,MAAM,EAAE,CAAC;QAC1E,GAAG,CAAC,GAAG,CAAC,YAAY,KAAK,MAAM,IAAI,OAAO,GAAG,CAAC,IAAI,KAAK,QAAQ,IAAI,EAAE,IAAI,EAAE,GAAG,CAAC,IAAI,EAAE,CAAC;KACvF,CAAC;AACJ,CAAC;AAED,SAAS,YAAY,CAAC,GAAiB;IACrC,OAAO;QACL,GAAG,CAAC,GAAG,CAAC,KAAK,IAAI,EAAE,KAAK,EAAE,GAAG,CAAC,KAAK,EAAE,CAAC;QACtC,GAAG,CAAC,GAAG,CAAC,eAAe,IAAI,EAAE,UAAU,EAAE,GAAG,CAAC,eAAe,EAAE,CAAC;QAC/D,GAAG,CAAC,OAAO,GAAG,CAAC,KAAK,KAAK,QAAQ,IAAI,EAAE,KAAK,EAAE,GAAG,CAAC,KAAK,EAAE,CAAC;QAC1D,GAAG,CAAC,OAAO,GAAG,CAAC,GAAG,KAAK,QAAQ,IAAI,EAAE,GAAG,EAAE,GAAG,CAAC,GAAG,EAAE,CAAC;QACpD,GAAG,CAAC,GAAG,CAAC,aAAa,IAAI,EAAE,YAAY,EAAE,GAAG,CAAC,aAAa,EAAE,CAAC;QAC7D,GAAG,CAAC,GAAG,CAAC,uBAAuB,IAAI;YACjC,qBAAqB,EAAE,GAAG,CAAC,uBAAuB;SACnD,CAAC;QACF,sBAAsB,EAAE,CAAC,GAAG,CAAC,uBAAuB,IAAI,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,CAAC;YACvE,GAAG,CAAC,EAAE,CAAC,aAAa,IAAI,EAAE,YAAY,EAAE,EAAE,CAAC,aAAa,EAAE,CAAC;YAC3D,GAAG,CAAC,EAAE,CAAC,OAAO,IAAI,EAAE,MAAM,EAAE,EAAE,CAAC,OAAO,EAAE,CAAC;YACzC,GAAG,CAAC,EAAE,CAAC,WAAW,IAAI,EAAE,UAAU,EAAE,EAAE,CAAC,WAAW,EAAE,CAAC;YACrD,gBAAgB,EAAE,EAAE,CAAC,iBAAiB,IAAI,EAAE;YAC5C,GAAG,CAAC,EAAE,CAAC,MAAM,IAAI,EAAE,MAAM,EAAE,EAAE,CAAC,MAAM,EAAE,CAAC;YACvC,GAAG,CAAC,EAAE,CAAC,OAAO,IAAI,EAAE,OAAO,EAAE,EAAE,CAAC,OAAO,EAAE,CAAC;YAC1C,GAAG,CAAC,EAAE,CAAC,KAAK,IAAI,EAAE,KAAK,EAAE,EAAE,CAAC,KAAK,EAAE,CAAC;YACpC,GAAG,CAAC,EAAE,CAAC,KAAK,IAAI,EAAE,KAAK,EAAE,EAAE,CAAC,KAAK,EAAE,CAAC;YACpC,GAAG,CAAC,EAAE,CAAC,WAAW,IAAI,EAAE,UAAU,EAAE,EAAE,CAAC,WAAW,EAAE,CAAC;YACrD,GAAG,CAAC,EAAE,CAAC,IAAI,IAAI,EAAE,IAAI,EAAE,EAAE,CAAC,IAAI,EAAE,CAAC;YACjC,GAAG,CAAC,EAAE,CAAC,QAAQ,IAAI,EAAE,QAAQ,EAAE,EAAE,CAAC,QAAQ,EAAE,CAAC;SAC9C,CAAC,CAAC;QACH,iBAAiB,EAAE,CAAC,GAAG,CAAC,kBAAkB,IAAI,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,CAAC;YAC7D,GAAG,CAAC,EAAE,CAAC,EAAE,IAAI,EAAE,EAAE,EAAE,EAAE,CAAC,EAAE,EAAE,CAAC;YAC3B,GAAG,CAAC,EAAE,CAAC,aAAa,IAAI,EAAE,YAAY,EAAE,EAAE,CAAC,aAAa,EAAE,CAAC;YAC3D,GAAG,CAAC,EAAE,CAAC,qBAAqB,EAAE,MAAM,IAAI;gBACtC,oBAAoB,EAAE,EAAE,CAAC,qBAAqB;aAC/C,CAAC;YACF,GAAG,CAAC,EAAE,CAAC,MAAM,EAAE,MAAM,IAAI,EAAE,MAAM,EAAE,EAAE,CAAC,MAAM,EAAE,CAAC;SAChD,CAAC,CAAC;KACJ,CAAC;AACJ,CAAC;AAED,SAAS,iBAAiB,CAAC,GAAwB,EAAE,QAAgB;IACnE,MAAM,SAAS,GAAG,GAAG,CAAC,IAAI,EAAE,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,EAAE,KAAK,QAAQ,CAAC,IAAI,GAAG,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC,CAAC;IAC5E,MAAM,QAAQ,GAAoB,CAAC,SAAS,EAAE,UAAU,IAAI,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC;QAC1E,QAAQ,EAAE,CAAC,CAAC,MAAM,EAAE,EAAE,IAAI,CAAC,CAAC,EAAE;QAC9B,GAAG,CAAC,CAAC,CAAC,MAAM,EAAE,OAAO;YACnB,CAAC,CAAC,EAAE,aAAa,EAAE,CAAC,CAAC,MAAM,CAAC,OAAO,EAAE;YACrC,CAAC,CAAC,CAAC,CAAC,OAAO;gBACT,CAAC,CAAC,EAAE,aAAa,EAAE,CAAC,CAAC,OAAO,EAAE;gBAC9B,CAAC,CAAC,EAAE,CAAC;QACT,GAAG,CAAC,CAAC,CAAC,IAAI,IAAI,EAAE,IAAI,EAAE,CAAC,CAAC,IAAI,EAAE,CAAC;QAC/B,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,EAAE,OAAO,IAAI,CAAC,CAAC,OAAO,CAAC,KAAK,QAAQ,IAAI;YAC1D,MAAM,EAAE,CAAC,CAAC,MAAM,EAAE,OAAO,IAAI,CAAC,CAAC,OAAO;SACvC,CAAC;QACF,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,EAAE,QAAQ,IAAI,CAAC,CAAC,QAAQ,CAAC,KAAK,QAAQ,IAAI;YAC5D,OAAO,EAAE,CAAC,CAAC,MAAM,EAAE,QAAQ,IAAI,CAAC,CAAC,QAAQ;SAC1C,CAAC;QACF,GAAG,CAAC,CAAC,CAAC,cAAc,IAAI,EAAE,aAAa,EAAE,CAAC,CAAC,cAAc,EAAE,CAAC;KAC7D,CAAC,CAAC,CAAC;IACJ,gFAAgF;IAChF,2EAA2E;IAC3E,OAAO;QACL,QAAQ;QACR,GAAG,CAAC,SAAS,EAAE,EAAE,IAAI,EAAE,eAAe,EAAE,SAAS,CAAC,EAAE,EAAE,CAAC;KACxD,CAAC;AACJ,CAAC;AAED,SAAS,aAAa,CAAC,GAAiB;IACtC,OAAO;QACL,GAAG,CAAC,GAAG,CAAC,MAAM,IAAI,EAAE,MAAM,EAAE,GAAG,CAAC,MAAM,EAAE,CAAC;QACzC,GAAG,CAAC,GAAG,CAAC,eAAe,IAAI,EAAE,aAAa,EAAE,GAAG,CAAC,eAAe,EAAE,CAAC;QAClE,GAAG,CAAC,GAAG,CAAC,UAAU,IAAI,EAAE,SAAS,EAAE,GAAG,CAAC,UAAU,EAAE,CAAC;QACpD,GAAG,CAAC,GAAG,CAAC,UAAU,IAAI,EAAE,SAAS,EAAE,GAAG,CAAC,UAAU,EAAE,CAAC;QACpD,GAAG,CAAC,GAAG,CAAC,WAAW,IAAI,EAAE,WAAW,EAAE,GAAG,CAAC,WAAW,EAAE,CAAC;KACzD,CAAC;AACJ,CAAC;AAED,SAAS,gBAAgB,CAAC,GAAuB;IAC/C,OAAO,CAAC,GAAG,CAAC,OAAO,IAAI,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC;QACrC,IAAI,EAAE,CAAC,CAAC,IAAI,IAAI,EAAE;QAClB,GAAG,CAAC,CAAC,CAAC,YAAY,IAAI,EAAE,WAAW,EAAE,CAAC,CAAC,YAAY,EAAE,CAAC;QACtD,GAAG,CAAC,CAAC,CAAC,WAAW,IAAI,EAAE,UAAU,EAAE,CAAC,CAAC,WAAW,EAAE,CAAC;QACnD,GAAG,CAAC,CAAC,CAAC,QAAQ,IAAI,EAAE,OAAO,EAAE,CAAC,CAAC,QAAQ,EAAE,CAAC;QAC1C,GAAG,CAAC,CAAC,CAAC,QAAQ,IAAI,EAAE,QAAQ,EAAE,CAAC,CAAC,QAAQ,EAAE,CAAC;QAC3C,GAAG,CAAC,CAAC,CAAC,QAAQ,IAAI,EAAE,QAAQ,EAAE,CAAC,CAAC,QAAQ,EAAE,CAAC;KAC5C,CAAC,CAAC,CAAC;AACN,CAAC;AAED,kBAAkB;AAElB,MAAM,OAAO,cAAc;IACR,OAAO,CAAS;IAEjC,YAAY,OAAkB,EAAE,QAAwB;QACtD,IAAI,CAAC,OAAO,GAAG,eAAe,EAAE,CAAC,OAAO,CAAC;IAC3C,CAAC;IAED,qBAAqB;IAEb,KAAK,CAAC,SAAS,CACrB,IAAY,EACZ,GAAY,EACZ,OAIC;QAED,MAAM,GAAG,GAAG,GAAG,IAAI,CAAC,OAAO,GAAG,IAAI,EAAE,CAAC;QACrC,MAAM,MAAM,GAAG,OAAO,EAAE,MAAM,IAAI,KAAK,CAAC;QACxC,MAAM,YAAY,GAAgB;YAChC,MAAM;YACN,OAAO,EAAE;gBACP,MAAM,EAAE,kBAAkB;gBAC1B,cAAc,EAAE,kBAAkB;aACnC;YACD,MAAM,EAAE,OAAO,EAAE,MAAM,IAAI,GAAG,CAAC,MAAM;SACtC,CAAC;QACF,IAAI,OAAO,EAAE,IAAI,KAAK,SAAS,EAAE,CAAC;YAChC,YAAY,CAAC,IAAI,GAAG,IAAI,CAAC,SAAS,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC;QACnD,CAAC;QAED,GAAG,CAAC,GAAG,CAAC,KAAK,CAAC,iBAAiB,EAAE,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,CAAC;QAElD,MAAM,QAAQ,GAAG,MAAM,KAAK,CAAC,GAAG,EAAE,YAAY,CAAC,CAAC;QAEhD,IAAI,QAAQ,CAAC,MAAM,KAAK,GAAG,EAAE,CAAC;YAC5B,MAAM,UAAU,GAAG,QAAQ,CAAC,OAAO,CAAC,GAAG,CAAC,aAAa,CAAC,CAAC;YACvD,MAAM,kBAAkB,CACtB,+BAA+B,UAAU,CAAC,CAAC,CAAC,gBAAgB,UAAU,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,EACjF,EAAE,UAAU,EAAE,UAAU,CAAC,CAAC,CAAC,MAAM,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC,SAAS,EAAE,CAC5D,CAAC;QACJ,CAAC;QAED,MAAM,IAAI,GAAG,MAAM,QAAQ,CAAC,IAAI,EAAE,CAAC;QAEnC,0BAA0B;QAC1B,IAAI,mCAAmC,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC;YACnD,MAAM,kBAAkB,CACtB,sEAAsE,CACvE,CAAC;QACJ,CAAC;QAED,IAAI,MAAe,CAAC;QACpB,IAAI,CAAC;YACH,MAAM,GAAG,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;QAC5B,CAAC;QAAC,MAAM,CAAC;YACP,MAAM,kBAAkB,CAAC,4CAA4C,EAAE;gBACrE,MAAM,EAAE,QAAQ,CAAC,MAAM;aACxB,CAAC,CAAC;QACL,CAAC;QAED,2CAA2C;QAC3C,IACE,OAAO,MAAM,KAAK,QAAQ;YAC1B,MAAM,KAAK,IAAI;YACf,OAAO,IAAI,MAAM;YACjB,OAAQ,MAA+B,CAAC,KAAK,KAAK,QAAQ,EAC1D,CAAC;YACD,MAAM,GAAG,GAAI,MAA+B,CAAC,KAAK,CAAC;YACnD,oCAAoC;YACpC,IAAI,kDAAkD,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC;gBACjE,MAAM,QAAQ,CAAC,GAAG,CAAC,CAAC;YACtB,CAAC;YACD,IAAI,6CAA6C,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC;gBAC5D,MAAM,eAAe,CAAC,GAAG,CAAC,CAAC;YAC7B,CAAC;YACD,8DAA8D;YAC9D,MAAM,QAAQ,CAAC,GAAG,CAAC,CAAC;QACtB,CAAC;QAED,IAAI,CAAC,QAAQ,CAAC,EAAE,EAAE,CAAC;YACjB,MAAM,kBAAkB,CAAC,6BAA6B,QAAQ,CAAC,MAAM,GAAG,EAAE;gBACxE,MAAM,EAAE,QAAQ,CAAC,MAAM;aACxB,CAAC,CAAC;QACL,CAAC;QAED,OAAO,MAAW,CAAC;IACrB,CAAC;IAED,4BAA4B;IAEpB,cAAc,CACpB,IAAY,EACZ,GAAY,EACZ,OAGC;QAED,MAAM,SAAS,GAAG,wBAAwB,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC;QAC/D,MAAM,MAAM,GAAG,qBAAqB,CAAC,oBAAoB,CAAC;YACxD,SAAS;YACT,aAAa,EAAE,EAAE,SAAS,EAAE,GAAG,CAAC,SAAS,EAAE;SAC5C,CAAC,CAAC;QACH,OAAO,SAAS,CAAC,GAAG,EAAE,CAAC,IAAI,CAAC,SAAS,CAAI,IAAI,EAAE,GAAG,EAAE,OAAO,CAAC,EAAE;YAC5D,SAAS;YACT,OAAO,EAAE,MAAM;YACf,WAAW,EAAE,IAAI;YACjB,MAAM,EAAE,GAAG,CAAC,MAAM;SACnB,CAAC,CAAC;IACL,CAAC;IAED,sBAAsB;IAEtB,KAAK,CAAC,UAAU,CACd,MAAc,EACd,OAAe,EACf,iBAA0B,EAC1B,GAAY;QAEZ,MAAM,MAAM,GAAG,iBAAiB,CAAC,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,EAAE,CAAC;QACpD,MAAM,IAAI,GAAG,kBAAkB,kBAAkB,CAAC,OAAO,CAAC,IAAI,kBAAkB,CAAC,MAAM,CAAC,GAAG,MAAM,EAAE,CAAC;QACpG,MAAM,GAAG,GAAG,MAAM,IAAI,CAAC,cAAc,CAAgB,IAAI,EAAE,GAAG,CAAC,CAAC;QAChE,OAAO,aAAa,CAAC,GAAG,CAAC,CAAC;IAC5B,CAAC;IAED,KAAK,CAAC,cAAc,CAAC,EAAU,EAAE,iBAA0B,EAAE,GAAY;QACvE,MAAM,MAAM,GAAG,iBAAiB,CAAC,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,EAAE,CAAC;QACpD,MAAM,IAAI,GAAG,cAAc,kBAAkB,CAAC,EAAE,CAAC,GAAG,MAAM,EAAE,CAAC;QAC7D,MAAM,GAAG,GAAG,MAAM,IAAI,CAAC,cAAc,CAAgB,IAAI,EAAE,GAAG,CAAC,CAAC;QAChE,OAAO,aAAa,CAAC,GAAG,CAAC,CAAC;IAC5B,CAAC;IAED,KAAK,CAAC,gBAAgB,CACpB,GAAa,EACb,iBAA0B,EAC1B,GAAY;QAEZ,MAAM,IAAI,GAA4B,EAAE,GAAG,EAAE,CAAC;QAC9C,IAAI,iBAAiB;YAAE,IAAI,CAAC,MAAM,GAAG,CAAC,CAAC;QACvC,MAAM,GAAG,GAAG,MAAM,IAAI,CAAC,cAAc,CAAuC,YAAY,EAAE,GAAG,EAAE;YAC7F,MAAM,EAAE,MAAM;YACd,IAAI;SACL,CAAC,CAAC;QACH,MAAM,MAAM,GAAG,IAAI,GAAG,EAAsB,CAAC;QAC7C,KAAK,MAAM,CAAC,CAAC,EAAE,CAAC,CAAC,IAAI,MAAM,CAAC,OAAO,CAAC,GAAG,CAAC,EAAE,CAAC;YACzC,IAAI,CAAC;gBAAE,MAAM,CAAC,GAAG,CAAC,CAAC,EAAE,aAAa,CAAC,CAAC,CAAC,CAAC,CAAC;QACzC,CAAC;QACD,OAAO,MAAM,CAAC;IAChB,CAAC;IAED,KAAK,CAAC,kBAAkB,CACtB,OAAiB,EACjB,OAAe,EACf,iBAA0B,EAC1B,GAAY;QAEZ,MAAM,IAAI,GAA4B,EAAE,OAAO,EAAE,CAAC;QAClD,IAAI,iBAAiB;YAAE,IAAI,CAAC,MAAM,GAAG,CAAC,CAAC;QACvC,MAAM,GAAG,GAAG,MAAM,IAAI,CAAC,cAAc,CACnC,kBAAkB,kBAAkB,CAAC,OAAO,CAAC,EAAE,EAC/C,GAAG,EACH,EAAE,MAAM,EAAE,MAAM,EAAE,IAAI,EAAE,CACzB,CAAC;QACF,MAAM,MAAM,GAAG,IAAI,GAAG,EAAsB,CAAC;QAC7C,KAAK,MAAM,CAAC,CAAC,EAAE,CAAC,CAAC,IAAI,MAAM,CAAC,OAAO,CAAC,GAAG,CAAC,EAAE,CAAC;YACzC,IAAI,CAAC;gBAAE,MAAM,CAAC,GAAG,CAAC,CAAC,EAAE,aAAa,CAAC,CAAC,CAAC,CAAC,CAAC;QACzC,CAAC;QACD,OAAO,MAAM,CAAC;IAChB,CAAC;IAED,4BAA4B;IAE5B,KAAK,CAAC,gBAAgB,CAAC,EAAU,EAAE,GAAY;QAC7C,MAAM,IAAI,GAAG,cAAc,kBAAkB,CAAC,EAAE,CAAC,EAAE,CAAC;QACpD,MAAM,GAAG,GAAG,MAAM,IAAI,CAAC,cAAc,CAAsB,IAAI,EAAE,GAAG,CAAC,CAAC;QACtE,OAAO,mBAAmB,CAAC,GAAG,CAAC,CAAC;IAClC,CAAC;IAED,mBAAmB;IAEnB,KAAK,CAAC,eAAe,CACnB,EAAU,EACV,IAAY,EACZ,YAAoB,EACpB,YAAoB,EACpB,GAAY;QAEZ,MAAM,MAAM,GAAG,CAAC,QAAQ,kBAAkB,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACpD,yEAAyE;QACzE,yFAAyF;QACzF,IAAI,IAAI,KAAK,SAAS,EAAE,CAAC;YACvB,IAAI,YAAY,GAAG,CAAC;gBAAE,MAAM,CAAC,IAAI,CAAC,iBAAiB,YAAY,EAAE,CAAC,CAAC;YACnE,IAAI,YAAY,GAAG,CAAC;gBAAE,MAAM,CAAC,IAAI,CAAC,iBAAiB,YAAY,EAAE,CAAC,CAAC;QACrE,CAAC;QACD,MAAM,IAAI,GAAG,gBAAgB,kBAAkB,CAAC,EAAE,CAAC,IAAI,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC;QAC1E,MAAM,GAAG,GAAG,MAAM,IAAI,CAAC,cAAc,CAAoB,IAAI,EAAE,GAAG,CAAC,CAAC;QACpE,OAAO,iBAAiB,CAAC,GAAG,EAAE,IAAI,CAAC,CAAC;IACtC,CAAC;IAED,KAAK,CAAC,mBAAmB,CACvB,OAAe,EACf,MAAc,EACd,YAAoB,EACpB,YAAoB,EACpB,GAAY;QAEZ,IAAI,IAAI,GAAG,oBAAoB,kBAAkB,CAAC,OAAO,CAAC,IAAI,kBAAkB,CAAC,MAAM,CAAC,EAAE,CAAC;QAC3F,MAAM,MAAM,GAAa,EAAE,CAAC;QAC5B,IAAI,YAAY,GAAG,CAAC;YAAE,MAAM,CAAC,IAAI,CAAC,iBAAiB,YAAY,EAAE,CAAC,CAAC;QACnE,IAAI,YAAY,GAAG,CAAC;YAAE,MAAM,CAAC,IAAI,CAAC,iBAAiB,YAAY,EAAE,CAAC,CAAC;QACnE,IAAI,MAAM,CAAC,MAAM,GAAG,CAAC;YAAE,IAAI,IAAI,IAAI,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC;QACtD,MAAM,GAAG,GAAG,MAAM,IAAI,CAAC,cAAc,CAAoB,IAAI,EAAE,GAAG,CAAC,CAAC;QACpE,OAAO,iBAAiB,CAAC,GAAG,EAAE,SAAS,CAAC,CAAC;IAC3C,CAAC;IAED,yBAAyB;IAEzB,KAAK,CAAC,WAAW,CACf,OAAe,EACf,MAAc,EACd,QAAkB,EAClB,OAA2B,EAC3B,GAAY;QAEZ,MAAM,aAAa,GAAG,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,WAAW,kBAAkB,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;QACxF,IAAI,IAAI,GAAG,mBAAmB,kBAAkB,CAAC,OAAO,CAAC,IAAI,kBAAkB,CAAC,MAAM,CAAC,IAAI,aAAa,EAAE,CAAC;QAC3G,IAAI,OAAO;YAAE,IAAI,IAAI,YAAY,kBAAkB,CAAC,OAAO,CAAC,EAAE,CAAC;QAC/D,MAAM,GAAG,GAAG,MAAM,IAAI,CAAC,cAAc,CAAsB,IAAI,EAAE,GAAG,CAAC,CAAC;QACtE,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,GAAG,CAAC;YAAE,OAAO,EAAE,CAAC;QACnC,OAAO,GAAG,CAAC,GAAG,CAAC,uBAAuB,CAAC,CAAC;IAC1C,CAAC;IAED,cAAc;IAEd,KAAK,CAAC,kBAAkB,CAAC,QAAgB,EAAE,OAAe,EAAE,GAAY;QACtE,MAAM,IAAI,GAAG,QAAQ,kBAAkB,CAAC,OAAO,CAAC,SAAS,kBAAkB,CAAC,QAAQ,CAAC,EAAE,CAAC;QACxF,MAAM,GAAG,GAAG,MAAM,IAAI,CAAC,cAAc,CAAiB,IAAI,EAAE,GAAG,CAAC,CAAC;QACjE,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,GAAG,CAAC;YAAE,OAAO,EAAE,CAAC;QACnC,OAAO,GAAG,CAAC,GAAG,CAAC,YAAY,CAAC,CAAC;IAC/B,CAAC;IAED,KAAK,CAAC,oBAAoB,CACxB,GAAW,EACX,KAAa,EACb,GAAW,EACX,MAAc,EACd,MAAc,EACd,OAAe,EACf,GAAY;QAEZ,MAAM,YAAY,GAAG,GAAG,kBAAkB,CAAC,GAAG,GAAG,IAAI,KAAK,IAAI,GAAG,IAAI,MAAM,EAAE,CAAC,IAAI,kBAAkB,CAAC,MAAM,CAAC,EAAE,CAAC;QAC/G,MAAM,IAAI,GAAG,QAAQ,kBAAkB,CAAC,OAAO,CAAC,WAAW,YAAY,EAAE,CAAC;QAC1E,MAAM,GAAG,GAAG,MAAM,IAAI,CAAC,cAAc,CAAiB,IAAI,EAAE,GAAG,CAAC,CAAC;QACjE,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,GAAG,CAAC;YAAE,OAAO,EAAE,CAAC;QACnC,OAAO,GAAG,CAAC,GAAG,CAAC,YAAY,CAAC,CAAC;IAC/B,CAAC;IAED,KAAK,CAAC,gBAAgB,CAAC,EAAU,EAAE,OAAe,EAAE,GAAY;QAC9D,MAAM,IAAI,GAAG,QAAQ,kBAAkB,CAAC,OAAO,CAAC,OAAO,kBAAkB,CAAC,EAAE,CAAC,EAAE,CAAC;QAChF,MAAM,GAAG,GAAG,MAAM,IAAI,CAAC,cAAc,CAAiB,IAAI,EAAE,GAAG,CAAC,CAAC;QACjE,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,GAAG,CAAC;YAAE,OAAO,EAAE,CAAC;QACnC,OAAO,GAAG,CAAC,GAAG,CAAC,YAAY,CAAC,CAAC;IAC/B,CAAC;IAED,mBAAmB;IAEnB,KAAK,CAAC,mBAAmB,CACvB,MAAc,EACd,OAAe,EACf,IAAY,EACZ,aAAiC,EACjC,GAAY;QAEZ,IAAI,IAAI,GAAG,oBAAoB,kBAAkB,CAAC,OAAO,CAAC,IAAI,kBAAkB,CAAC,MAAM,CAAC,SAAS,kBAAkB,CAAC,IAAI,CAAC,EAAE,CAAC;QAC5H,IAAI,aAAa;YAAE,IAAI,IAAI,mBAAmB,kBAAkB,CAAC,aAAa,CAAC,EAAE,CAAC;QAClF,MAAM,GAAG,GAAG,MAAM,IAAI,CAAC,cAAc,CAAsB,IAAI,EAAE,GAAG,CAAC,CAAC;QACtE,OAAO,iBAAiB,CAAC,GAAG,EAAE,MAAM,CAAC,CAAC;IACxC,CAAC;IAED,KAAK,CAAC,eAAe,CACnB,EAAU,EACV,OAAe,EACf,IAAY,EACZ,aAAiC,EACjC,GAAY;QAEZ,IAAI,IAAI,GAAG,gBAAgB,kBAAkB,CAAC,OAAO,CAAC,IAAI,kBAAkB,CAAC,EAAE,CAAC,SAAS,kBAAkB,CAAC,IAAI,CAAC,EAAE,CAAC;QACpH,IAAI,aAAa;YAAE,IAAI,IAAI,mBAAmB,kBAAkB,CAAC,aAAa,CAAC,EAAE,CAAC;QAClF,MAAM,GAAG,GAAG,MAAM,IAAI,CAAC,cAAc,CAAsB,IAAI,EAAE,GAAG,CAAC,CAAC;QACtE,OAAO,iBAAiB,CAAC,GAAG,EAAE,EAAE,CAAC,CAAC;IACpC,CAAC;IAED,gBAAgB;IAEhB,KAAK,CAAC,YAAY,CAAC,EAAU,EAAE,MAA0B,EAAE,GAAY;QACrE,IAAI,IAAI,GAAG,aAAa,kBAAkB,CAAC,EAAE,CAAC,EAAE,CAAC;QACjD,IAAI,MAAM;YAAE,IAAI,IAAI,gBAAgB,kBAAkB,CAAC,MAAM,CAAC,EAAE,CAAC;QACjE,MAAM,GAAG,GAAG,MAAM,IAAI,CAAC,cAAc,CAAiB,IAAI,EAAE,GAAG,CAAC,CAAC;QACjE,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,GAAG,CAAC;YAAE,OAAO,EAAE,CAAC;QACnC,OAAO,GAAG,CAAC,GAAG,CAAC,aAAa,CAAC,CAAC;IAChC,CAAC;IAED,kBAAkB;IAElB,KAAK,CAAC,WAAW,CAAC,QAA4B,EAAE,GAAY;QAC1D,IAAI,IAAI,GAAG,eAAe,CAAC;QAC3B,IAAI,QAAQ;YAAE,IAAI,IAAI,aAAa,kBAAkB,CAAC,QAAQ,CAAC,EAAE,CAAC;QAClE,MAAM,GAAG,GAAG,MAAM,IAAI,CAAC,cAAc,CAAqB,IAAI,EAAE,GAAG,CAAC,CAAC;QACrE,OAAO,gBAAgB,CAAC,GAAG,CAAC,CAAC;IAC/B,CAAC;CACF;AAED,gCAAgC;AAEhC,IAAI,QAAoC,CAAC;AAEzC,MAAM,UAAU,kBAAkB,CAAC,MAAiB,EAAE,OAAuB;IAC3E,QAAQ,GAAG,IAAI,cAAc,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;AACjD,CAAC;AAED,MAAM,UAAU,iBAAiB;IAC/B,IAAI,CAAC,QAAQ,EAAE,CAAC;QACd,MAAM,IAAI,KAAK,CAAC,uEAAuE,CAAC,CAAC;IAC3F,CAAC;IACD,OAAO,QAAQ,CAAC;AAClB,CAAC"}
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@cyanheads/ensembl-mcp-server",
3
- "version": "0.4.0",
3
+ "version": "0.4.1",
4
4
  "mcpName": "io.github.cyanheads/ensembl-mcp-server",
5
5
  "description": "Look up genes, fetch sequences, predict variant consequences, find orthologs and cross-database xrefs via Ensembl REST via MCP. STDIO or Streamable HTTP.",
6
6
  "type": "module",
@@ -69,7 +69,7 @@
69
69
  "url": "https://github.com/cyanheads/ensembl-mcp-server/issues"
70
70
  },
71
71
  "homepage": "https://github.com/cyanheads/ensembl-mcp-server#readme",
72
- "author": "cyanheads <casey@caseyjhand.com> (https://github.com/cyanheads/ensembl-mcp-server#readme)",
72
+ "author": "Casey Hand <casey@caseyjhand.com> (https://caseyjhand.com)",
73
73
  "funding": [
74
74
  {
75
75
  "type": "github",
@@ -81,7 +81,7 @@
81
81
  }
82
82
  ],
83
83
  "license": "Apache-2.0",
84
- "packageManager": "bun@1.3.11",
84
+ "packageManager": "bun@1.3.14",
85
85
  "engines": {
86
86
  "bun": ">=1.3.0",
87
87
  "node": ">=24.0.0"
@@ -90,17 +90,19 @@
90
90
  "access": "public"
91
91
  },
92
92
  "dependencies": {
93
- "@cyanheads/mcp-ts-core": "^0.10.10",
93
+ "@cyanheads/mcp-ts-core": "^0.10.14",
94
94
  "pino-pretty": "^13.1.3",
95
95
  "zod": "^4.4.3"
96
96
  },
97
97
  "devDependencies": {
98
98
  "@biomejs/biome": "^2.5.0",
99
+ "@socketsecurity/bun-security-scanner": "^1.1.2",
99
100
  "@types/node": "^26.0.0",
100
101
  "depcheck": "^1.4.7",
101
102
  "ignore": "^7.0.5",
102
- "tsc-alias": "^1.8.17",
103
+ "tsc-alias": "^1.9.0",
103
104
  "typescript": "^6.0.3",
104
- "vitest": "^4.1.9"
105
- }
105
+ "vitest": "^4.1.10"
106
+ },
107
+ "trustedDependencies": ["@socketsecurity/bun-security-scanner"]
106
108
  }
package/server.json CHANGED
@@ -6,7 +6,7 @@
6
6
  "url": "https://github.com/cyanheads/ensembl-mcp-server",
7
7
  "source": "github"
8
8
  },
9
- "version": "0.4.0",
9
+ "version": "0.4.1",
10
10
  "remotes": [
11
11
  {
12
12
  "type": "streamable-http",
@@ -19,7 +19,7 @@
19
19
  "registryBaseUrl": "https://registry.npmjs.org",
20
20
  "identifier": "@cyanheads/ensembl-mcp-server",
21
21
  "runtimeHint": "bun",
22
- "version": "0.4.0",
22
+ "version": "0.4.1",
23
23
  "packageArguments": [
24
24
  {
25
25
  "type": "positional",
@@ -55,7 +55,7 @@
55
55
  "registryBaseUrl": "https://registry.npmjs.org",
56
56
  "identifier": "@cyanheads/ensembl-mcp-server",
57
57
  "runtimeHint": "bun",
58
- "version": "0.4.0",
58
+ "version": "0.4.1",
59
59
  "packageArguments": [
60
60
  {
61
61
  "type": "positional",