@cyanheads/ensembl-mcp-server 0.1.4 → 0.1.5

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (6) hide show
  1. package/AGENTS.md +2 -2
  2. package/CLAUDE.md +2 -2
  3. package/README.md +1 -1
  4. package/changelog/0.1.x/0.1.5.md +28 -0
  5. package/package.json +5 -5
  6. package/server.json +3 -3
package/AGENTS.md CHANGED
@@ -1,8 +1,8 @@
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  # Developer Protocol
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  **Server:** ensembl-mcp-server
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- **Version:** 0.1.4
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- **Framework:** [@cyanheads/mcp-ts-core](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) `^0.10.6`
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+ **Version:** 0.1.5
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+ **Framework:** [@cyanheads/mcp-ts-core](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) `^0.10.9`
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  **Engines:** Bun ≥1.3.0, Node ≥24.0.0
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  **MCP SDK:** `@modelcontextprotocol/sdk` ^1.29.0
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  **Zod:** ^4.4.3
package/CLAUDE.md CHANGED
@@ -1,8 +1,8 @@
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  # Developer Protocol
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  **Server:** ensembl-mcp-server
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- **Version:** 0.1.4
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- **Framework:** [@cyanheads/mcp-ts-core](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) `^0.10.6`
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+ **Version:** 0.1.5
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+ **Framework:** [@cyanheads/mcp-ts-core](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) `^0.10.9`
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  **Engines:** Bun ≥1.3.0, Node ≥24.0.0
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  **MCP SDK:** `@modelcontextprotocol/sdk` ^1.29.0
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  **Zod:** ^4.4.3
package/README.md CHANGED
@@ -7,7 +7,7 @@
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  <div align="center">
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- [![Version](https://img.shields.io/badge/Version-0.1.3-blue.svg?style=flat-square)](./CHANGELOG.md) [![License](https://img.shields.io/badge/License-Apache%202.0-orange.svg?style=flat-square)](./LICENSE) [![Docker](https://img.shields.io/badge/Docker-ghcr.io-2496ED?style=flat-square&logo=docker&logoColor=white)](https://github.com/users/cyanheads/packages/container/package/ensembl-mcp-server) [![MCP SDK](https://img.shields.io/badge/MCP%20SDK-^1.29.0-green.svg?style=flat-square)](https://modelcontextprotocol.io/) [![npm](https://img.shields.io/npm/v/@cyanheads/ensembl-mcp-server?style=flat-square&logo=npm&logoColor=white)](https://www.npmjs.com/package/@cyanheads/ensembl-mcp-server) [![TypeScript](https://img.shields.io/badge/TypeScript-^6.0.3-3178C6.svg?style=flat-square)](https://www.typescriptlang.org/) [![Bun](https://img.shields.io/badge/Bun-v1.3.11-blueviolet.svg?style=flat-square)](https://bun.sh/)
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+ [![Version](https://img.shields.io/badge/Version-0.1.5-blue.svg?style=flat-square)](./CHANGELOG.md) [![License](https://img.shields.io/badge/License-Apache%202.0-orange.svg?style=flat-square)](./LICENSE) [![Docker](https://img.shields.io/badge/Docker-ghcr.io-2496ED?style=flat-square&logo=docker&logoColor=white)](https://github.com/users/cyanheads/packages/container/package/ensembl-mcp-server) [![MCP SDK](https://img.shields.io/badge/MCP%20SDK-^1.29.0-green.svg?style=flat-square)](https://modelcontextprotocol.io/) [![npm](https://img.shields.io/npm/v/@cyanheads/ensembl-mcp-server?style=flat-square&logo=npm&logoColor=white)](https://www.npmjs.com/package/@cyanheads/ensembl-mcp-server) [![TypeScript](https://img.shields.io/badge/TypeScript-^6.0.3-3178C6.svg?style=flat-square)](https://www.typescriptlang.org/) [![Bun](https://img.shields.io/badge/Bun-v1.3.11-blueviolet.svg?style=flat-square)](https://bun.sh/)
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  </div>
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package/changelog/0.1.x/0.1.5.md ADDED
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+ ---
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+ summary: "mcp-ts-core ^0.10.6 → ^0.10.9; new check-dependency-specifiers devcheck gate; plugin-manifest packaging checks; fresh-scaffold/worktree devcheck guards; 14 skills re-synced; biome 2.5 + dep refresh"
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+ breaking: false
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+ security: false
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+ ---
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+
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+ # 0.1.5 — 2026-06-20
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+
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+ ## Added
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+
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+ - **`scripts/check-dependency-specifiers.ts`** — new `devcheck` step (`Dependency Specifiers`, flag `--no-dep-specifiers`) that hard-fails on floating specifiers (`latest`, `*`, pre-release dist-tags) in `package.json`'s dependency sections and `bun.lock`'s `workspaces` map. Catches `bun update --latest` writing a literal `latest` dist-tag into the lock — correct at write time, then re-resolving past the `package.json` range on the next install. ([#246](https://github.com/cyanheads/mcp-ts-core/issues/246))
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+ - **Plugin-manifest packaging checks** — `scripts/lint-packaging.ts` now validates `.claude-plugin/plugin.json` and `.codex-plugin/plugin.json` (non-empty descriptions, unscoped machine name in display fields, full `package.json` name in the install arg). Gated by the new `devcheck.config.json` `packaging.pluginManifests` flag; the `devcheck` Packaging gate now runs whenever a plugin manifest is present, not only when `manifest.json` exists. ([#240](https://github.com/cyanheads/mcp-ts-core/issues/240))
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+
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+ ## Changed
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+
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+ - **`@cyanheads/mcp-ts-core`** `^0.10.6` → `^0.10.9` — framework maintenance adoption.
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+ - **`.codex-plugin/plugin.json`** — populated the empty `interface.longDescription` with a full server overview (tools, resources, the `ensembl_gene_dossier` prompt, species naming, `ENSEMBL_BASE_URL`).
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+ - **`scripts/devcheck.ts`** — git-dependent checks (TODOs/FIXMEs, Tracked Secrets, Framework Antipatterns) now skip via a shared `isGitRepo()` guard when `.git` is absent, instead of failing on `git grep`/`git ls-files` exit 128. ([#243](https://github.com/cyanheads/mcp-ts-core/issues/243))
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+ - **`scripts/build-changelog.ts`** — under `--check`, exits cleanly when no `<major.minor>.x/` version files exist yet (fresh scaffold), rather than throwing. ([#242](https://github.com/cyanheads/mcp-ts-core/issues/242))
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+ - **`scripts/check-skill-versions.ts`** — skips a `SKILL.md` deleted from the worktree (`existsSync` guard) instead of crashing with ENOENT on maintenance passes that prune an upstream-removed skill. ([#237](https://github.com/cyanheads/mcp-ts-core/issues/237))
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+ - **`scripts/check-framework-antipatterns.ts`** — self-guards for direct invocation outside a git repo.
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+ - **Skills** — 14 `SKILL.md` files re-synced to the framework `^0.10.9` set, including seven `metadata.version` bumps propagating body drift ([#238](https://github.com/cyanheads/mcp-ts-core/issues/238)) and the `api-context` `ctx.content` collector reference ([#239](https://github.com/cyanheads/mcp-ts-core/issues/239)).
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+
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+ ### Dependency bumps
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+
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+ - `@biomejs/biome` `^2.4.16` → `^2.5.0`
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+ - `@types/node` `^25.9.3` → `^26.0.0`
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+ - `vitest` `^4.1.8` → `^4.1.9`
package/package.json CHANGED
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  {
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  "name": "@cyanheads/ensembl-mcp-server",
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- "version": "0.1.4",
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+ "version": "0.1.5",
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  "mcpName": "io.github.cyanheads/ensembl-mcp-server",
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  "description": "Look up genes, fetch sequences, predict variant consequences, find orthologs and cross-database xrefs via Ensembl REST via MCP. STDIO or Streamable HTTP.",
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  "type": "module",
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  "access": "public"
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  },
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  "dependencies": {
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- "@cyanheads/mcp-ts-core": "^0.10.6",
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+ "@cyanheads/mcp-ts-core": "^0.10.9",
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  "pino-pretty": "^13.1.3",
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  "zod": "^4.4.3"
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  },
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  "devDependencies": {
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- "@biomejs/biome": "^2.4.16",
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- "@types/node": "^25.9.3",
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+ "@biomejs/biome": "^2.5.0",
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+ "@types/node": "^26.0.0",
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  "depcheck": "^1.4.7",
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  "ignore": "^7.0.5",
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  "tsc-alias": "^1.8.17",
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  "typescript": "^6.0.3",
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- "vitest": "^4.1.8"
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+ "vitest": "^4.1.9"
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  }
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  }
package/server.json CHANGED
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  "url": "https://github.com/cyanheads/ensembl-mcp-server",
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  "source": "github"
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  },
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- "version": "0.1.4",
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+ "version": "0.1.5",
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  "remotes": [
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  {
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  "type": "streamable-http",
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  "registryBaseUrl": "https://registry.npmjs.org",
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  "identifier": "@cyanheads/ensembl-mcp-server",
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  "runtimeHint": "bun",
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- "version": "0.1.4",
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+ "version": "0.1.5",
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  "packageArguments": [
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  {
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  "type": "positional",
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  "registryBaseUrl": "https://registry.npmjs.org",
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  "identifier": "@cyanheads/ensembl-mcp-server",
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  "runtimeHint": "bun",
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- "version": "0.1.4",
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+ "version": "0.1.5",
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  "packageArguments": [
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  {
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  "type": "positional",