@cyanheads/ensembl-mcp-server 0.1.1

package/dist/services/ensembl/types.d.ts.map

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package/dist/services/ensembl/types.js

@@ -0,0 +1,6 @@
+/**
+ * @fileoverview Ensembl REST API response types confirmed against live API payloads.
+ * @module services/ensembl/types
+ */
+export {};
+//# sourceMappingURL=types.js.map

package/dist/services/ensembl/types.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"types.js","sourceRoot":"","sources":["../../../src/services/ensembl/types.ts"],"names":[],"mappings":"AAAA;;;GAGG"}

package/package.json

@@ -0,0 +1,106 @@
+{
+  "name": "@cyanheads/ensembl-mcp-server",
+  "version": "0.1.1",
+  "mcpName": "io.github.cyanheads/ensembl-mcp-server",
+  "description": "Look up genes, fetch sequences, predict variant consequences, find orthologs and cross-database xrefs via Ensembl REST via MCP. STDIO or Streamable HTTP.",
+  "type": "module",
+  "main": "dist/index.js",
+  "types": "dist/index.d.ts",
+  "bin": {
+    "ensembl-mcp-server": "dist/index.js"
+  },
+  "files": [
+    "changelog/",
+    "dist/",
+    "README.md",
+    "LICENSE",
+    "CLAUDE.md",
+    "AGENTS.md",
+    "Dockerfile",
+    "server.json"
+  ],
+  "scripts": {
+    "build": "bun run scripts/build.ts",
+    "rebuild": "bun run scripts/clean.ts && bun run scripts/build.ts",
+    "clean": "bun run scripts/clean.ts",
+    "devcheck": "bun run scripts/devcheck.ts",
+    "audit:refresh": "rm -f bun.lock && bun install && bun audit",
+    "tree": "bun run scripts/tree.ts",
+    "list-skills": "bun run scripts/list-skills.ts",
+    "format": "biome check --write .",
+    "format:unsafe": "biome check --write --unsafe .",
+    "lint:mcp": "bun run scripts/lint-mcp.ts",
+    "lint:packaging": "bun run scripts/lint-packaging.ts",
+    "bundle": "npm run build && npx -y @anthropic-ai/mcpb pack . dist/ensembl-mcp-server.mcpb",
+    "changelog:build": "bun run scripts/build-changelog.ts",
+    "changelog:check": "bun run scripts/build-changelog.ts --check",
+    "release:github": "bun run scripts/release-github.ts",
+    "publish-mcp": "mcp-publisher login github -token \"$(security find-generic-password -a \"$USER\" -s mcp-publisher-github-pat -w)\" && mcp-publisher publish",
+    "test": "vitest run",
+    "start": "node dist/index.js",
+    "start:stdio": "MCP_TRANSPORT_TYPE=stdio node dist/index.js",
+    "start:http": "MCP_TRANSPORT_TYPE=http node dist/index.js"
+  },
+  "keywords": [
+    "ensembl",
+    "genomics",
+    "bioinformatics",
+    "genes",
+    "sequences",
+    "variants",
+    "vep",
+    "homology",
+    "orthologs",
+    "rest-ensembl",
+    "mcp",
+    "mcp-server",
+    "model-context-protocol",
+    "typescript",
+    "bun",
+    "stdio",
+    "streamable-http",
+    "ai-agent"
+  ],
+  "repository": {
+    "type": "git",
+    "url": "git+https://github.com/cyanheads/ensembl-mcp-server.git"
+  },
+  "bugs": {
+    "url": "https://github.com/cyanheads/ensembl-mcp-server/issues"
+  },
+  "homepage": "https://github.com/cyanheads/ensembl-mcp-server#readme",
+  "author": "cyanheads <casey@caseyjhand.com> (https://github.com/cyanheads/ensembl-mcp-server#readme)",
+  "funding": [
+    {
+      "type": "github",
+      "url": "https://github.com/sponsors/cyanheads"
+    },
+    {
+      "type": "buy_me_a_coffee",
+      "url": "https://www.buymeacoffee.com/cyanheads"
+    }
+  ],
+  "license": "Apache-2.0",
+  "packageManager": "bun@1.3.11",
+  "engines": {
+    "bun": ">=1.3.0",
+    "node": ">=24.0.0"
+  },
+  "publishConfig": {
+    "access": "public"
+  },
+  "dependencies": {
+    "@cyanheads/mcp-ts-core": "^0.9.21",
+    "pino-pretty": "^13.1.3",
+    "zod": "^4.4.3"
+  },
+  "devDependencies": {
+    "@biomejs/biome": "^2.4.16",
+    "@types/node": "^25.9.1",
+    "depcheck": "^1.4.7",
+    "ignore": "^7.0.5",
+    "tsc-alias": "^1.8.17",
+    "typescript": "^6.0.3",
+    "vitest": "^4.1.8"
+  }
+}

package/server.json

@@ -0,0 +1,113 @@
+{
+  "$schema": "https://static.modelcontextprotocol.io/schemas/2025-12-11/server.schema.json",
+  "name": "io.github.cyanheads/ensembl-mcp-server",
+  "description": "Look up genes, fetch sequences, predict variant consequences, find orthologs and xrefs via Ensembl.",
+  "repository": {
+    "url": "https://github.com/cyanheads/ensembl-mcp-server",
+    "source": "github"
+  },
+  "version": "0.1.1",
+  "packages": [
+    {
+      "registryType": "npm",
+      "registryBaseUrl": "https://registry.npmjs.org",
+      "identifier": "@cyanheads/ensembl-mcp-server",
+      "runtimeHint": "bun",
+      "version": "0.1.1",
+      "packageArguments": [
+        {
+          "type": "positional",
+          "value": "run"
+        },
+        {
+          "type": "positional",
+          "value": "start:stdio"
+        }
+      ],
+      "environmentVariables": [
+        {
+          "name": "ENSEMBL_BASE_URL",
+          "description": "Ensembl REST API base URL. Override to use GRCh37 endpoint or a local mirror.",
+          "format": "string",
+          "isRequired": false,
+          "default": "https://rest.ensembl.org"
+        },
+        {
+          "name": "MCP_LOG_LEVEL",
+          "description": "Sets the minimum log level for output (e.g., 'debug', 'info', 'warn').",
+          "format": "string",
+          "isRequired": false,
+          "default": "info"
+        }
+      ],
+      "transport": {
+        "type": "stdio"
+      }
+    },
+    {
+      "registryType": "npm",
+      "registryBaseUrl": "https://registry.npmjs.org",
+      "identifier": "@cyanheads/ensembl-mcp-server",
+      "runtimeHint": "bun",
+      "version": "0.1.1",
+      "packageArguments": [
+        {
+          "type": "positional",
+          "value": "run"
+        },
+        {
+          "type": "positional",
+          "value": "start:http"
+        }
+      ],
+      "environmentVariables": [
+        {
+          "name": "ENSEMBL_BASE_URL",
+          "description": "Ensembl REST API base URL. Override to use GRCh37 endpoint or a local mirror.",
+          "format": "string",
+          "isRequired": false,
+          "default": "https://rest.ensembl.org"
+        },
+        {
+          "name": "MCP_HTTP_HOST",
+          "description": "The hostname for the HTTP server.",
+          "format": "string",
+          "isRequired": false,
+          "default": "127.0.0.1"
+        },
+        {
+          "name": "MCP_HTTP_PORT",
+          "description": "The port to run the HTTP server on.",
+          "format": "string",
+          "isRequired": false,
+          "default": "3010"
+        },
+        {
+          "name": "MCP_HTTP_ENDPOINT_PATH",
+          "description": "The endpoint path for the MCP server.",
+          "format": "string",
+          "isRequired": false,
+          "default": "/mcp"
+        },
+        {
+          "name": "MCP_AUTH_MODE",
+          "description": "Authentication mode to use: 'none', 'jwt', or 'oauth'.",
+          "format": "string",
+          "isRequired": false,
+          "default": "none"
+        },
+        {
+          "name": "MCP_LOG_LEVEL",
+          "description": "Sets the minimum log level for output (e.g., 'debug', 'info', 'warn').",
+          "format": "string",
+          "isRequired": false,
+          "default": "info"
+        }
+      ],
+      "transport": {
+        "type": "streamable-http",
+        "url": "http://localhost:3010/mcp"
+      }
+    }
+  ]
+}