@cyanheads/brapi-mcp-server 0.8.0 → 0.8.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/AGENTS.md +27 -24
- package/CLAUDE.md +27 -24
- package/Dockerfile +93 -54
- package/README.md +6 -3
- package/changelog/0.8.x/0.8.1.md +38 -0
- package/dist/index.js +6 -5
- package/dist/index.js.map +1 -1
- package/dist/mcp-server/resources/definitions/brapi-variable.resource.d.ts.map +1 -1
- package/dist/mcp-server/resources/definitions/brapi-variable.resource.js +2 -10
- package/dist/mcp-server/resources/definitions/brapi-variable.resource.js.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-build-phenotype-matrix.tool.js +1 -1
- package/dist/mcp-server/tools/definitions/brapi-build-phenotype-matrix.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-connect.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-connect.tool.js +1 -1
- package/dist/mcp-server/tools/definitions/brapi-connect.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-dataframe-describe.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-dataframe-describe.tool.js +1 -3
- package/dist/mcp-server/tools/definitions/brapi-dataframe-describe.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-dataframe-export.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-dataframe-export.tool.js +4 -10
- package/dist/mcp-server/tools/definitions/brapi-dataframe-export.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-dataframe-query.tool.js +1 -1
- package/dist/mcp-server/tools/definitions/brapi-dataframe-query.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-describe-filters.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-describe-filters.tool.js +1 -5
- package/dist/mcp-server/tools/definitions/brapi-describe-filters.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-export-genotype-matrix.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-export-genotype-matrix.tool.js +2 -2
- package/dist/mcp-server/tools/definitions/brapi-export-genotype-matrix.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.js +2 -2
- package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-germplasm-performance.tool.js +1 -5
- package/dist/mcp-server/tools/definitions/brapi-germplasm-performance.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-get-germplasm.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-get-germplasm.tool.js +2 -10
- package/dist/mcp-server/tools/definitions/brapi-get-germplasm.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-get-image.tool.js +1 -1
- package/dist/mcp-server/tools/definitions/brapi-get-image.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-get-study.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-get-study.tool.js +2 -10
- package/dist/mcp-server/tools/definitions/brapi-get-study.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-raw-get.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-raw-get.tool.js +0 -1
- package/dist/mcp-server/tools/definitions/brapi-raw-get.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-raw-search.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-raw-search.tool.js +1 -5
- package/dist/mcp-server/tools/definitions/brapi-raw-search.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-submit-observations.tool.d.ts +5 -0
- package/dist/mcp-server/tools/definitions/brapi-submit-observations.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-submit-observations.tool.js +55 -10
- package/dist/mcp-server/tools/definitions/brapi-submit-observations.tool.js.map +1 -1
- package/dist/mcp-server/tools/shared/find-helpers.d.ts +5 -5
- package/dist/mcp-server/tools/shared/find-helpers.d.ts.map +1 -1
- package/dist/mcp-server/tools/shared/find-helpers.js +7 -11
- package/dist/mcp-server/tools/shared/find-helpers.js.map +1 -1
- package/dist/services/capability-registry/capability-registry.d.ts.map +1 -1
- package/dist/services/capability-registry/capability-registry.js +6 -6
- package/dist/services/capability-registry/capability-registry.js.map +1 -1
- package/dist/services/server-registry/server-registry.d.ts.map +1 -1
- package/dist/services/server-registry/server-registry.js +0 -3
- package/dist/services/server-registry/server-registry.js.map +1 -1
- package/manifest.json +1 -1
- package/package.json +11 -10
- package/server.json +11 -13
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+
{"version":3,"file":"server-registry.d.ts","sourceRoot":"","sources":["../../../src/services/server-registry/server-registry.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAEH,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,wBAAwB,CAAC;AAQtD,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,2BAA2B,CAAC;AAE9D,OAAO,KAAK,EAAE,QAAQ,EAAE,WAAW,EAAE,gBAAgB,EAAE,MAAM,YAAY,CAAC;AAE1E,eAAO,MAAM,aAAa,YAAY,CAAC;AAKvC,MAAM,WAAW,aAAa;IAC5B,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,IAAI,CAAC,EAAE,WAAW,CAAC;IACnB,OAAO,EAAE,MAAM,CAAC;CACjB;AAED,qBAAa,cAAc;IAEvB,OAAO,CAAC,QAAQ,CAAC,YAAY;IAC7B,OAAO,CAAC,QAAQ,CAAC,YAAY;IAF/B,YACmB,YAAY,EAAE,YAAY,EAC1B,YAAY,GAAE,YAAkC,EAC/D;IAEJ;;OAEG;IACG,QAAQ,CAAC,GAAG,EAAE,OAAO,EAAE,KAAK,EAAE,aAAa,GAAG,OAAO,CAAC,gBAAgB,CAAC,CAI5E;IAED;;;;;;OAMG;IACG,OAAO,CAAC,GAAG,EAAE,OAAO,EAAE,KAAK,EAAE,aAAa,GAAG,OAAO,CAAC,gBAAgB,CAAC,CAe3E;IAED,iFAAiF;IAC3E,IAAI,CAAC,GAAG,EAAE,OAAO,EAAE,UAAU,EAAE,gBAAgB,GAAG,OAAO,CAAC,IAAI,CAAC,CAEpE;IAED,yDAAyD;IACnD,GAAG,CAAC,GAAG,EAAE,OAAO,EAAE,KAAK,GAAE,MAAsB,GAAG,OAAO,CAAC,gBAAgB,CAAC,CAShF;IAED,qCAAqC;IACrC,WAAW,CAAC,GAAG,EAAE,OAAO,EAAE,KAAK,GAAE,MAAsB,GAAG,OAAO,CAAC,gBAAgB,GAAG,IAAI,CAAC,CAEzF;IAEK,IAAI,CAAC,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,gBAAgB,EAAE,CAAC,CAcpD;IAEK,UAAU,CAAC,GAAG,EAAE,OAAO,EAAE,KAAK,GAAE,MAAsB,GAAG,OAAO,CAAC,IAAI,CAAC,CAE3E;IAED;;;;OAIG;IACH,0BAA0B,CAAC,GAAG,EAAE,OAAO,GAAG,OAAO,CAEhD;IAED;;;;;;;;OAQG;IACH,OAAO,CAAC,WAAW;IAOnB,OAAO,CAAC,OAAO;YAID,WAAW;YA0BX,gBAAgB;YAoChB,mBAAmB;CAuClC;AAED;;;GAGG;AACH,MAAM,MAAM,YAAY,GAAG,CACzB,GAAG,EAAE,MAAM,EACX,IAAI,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,EAC7B,GAAG,EAAE,OAAO,EACZ,OAAO,EAAE;IAAE,SAAS,EAAE,MAAM,CAAC;IAAC,gBAAgB,EAAE,OAAO,CAAA;CAAE,KACtD,OAAO,CAAC,aAAa,CAAC,CAAC;AAE5B,UAAU,aAAa;IACrB,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,CAAC,GAAG,EAAE,MAAM,GAAG,OAAO,CAAC;CACxB;AA8FD,wBAAgB,kBAAkB,CAAC,YAAY,EAAE,YAAY,GAAG,IAAI,CAEnE;AAED,wBAAgB,iBAAiB,IAAI,cAAc,CAKlD;AAED,wBAAgB,mBAAmB,IAAI,IAAI,CAE1C;AAED,YAAY,EAAE,QAAQ,EAAE,WAAW,EAAE,gBAAgB,EAAE,CAAC"}
|
|
@@ -149,7 +149,6 @@ export class ServerRegistry {
|
|
|
149
149
|
tokenUrl,
|
|
150
150
|
payloadKeys: Object.keys(payload),
|
|
151
151
|
reason: 'auth_no_access_token',
|
|
152
|
-
...ctx.recoveryFor('auth_no_access_token'),
|
|
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152
|
});
|
|
154
153
|
}
|
|
155
154
|
const resolved = {
|
|
@@ -176,7 +175,6 @@ export class ServerRegistry {
|
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176
175
|
tokenUrl,
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|
payloadKeys: Object.keys(payload),
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|
reason: 'auth_no_access_token',
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|
-
...ctx.recoveryFor('auth_no_access_token'),
|
|
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178
|
});
|
|
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179
|
}
|
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180
|
const tokenType = typeof payload.token_type === 'string' && payload.token_type.trim()
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@@ -215,7 +213,6 @@ const defaultTokenFetcher = async (url, body, ctx, options) => {
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|
215
213
|
throw forbidden(`Token exchange failed at ${url}. Verify credentials and that the server exposes /token.`, {
|
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|
tokenUrl: url,
|
|
217
215
|
reason: 'auth_token_exchange_failed',
|
|
218
|
-
...ctx.recoveryFor('auth_token_exchange_failed'),
|
|
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216
|
}, { cause: err });
|
|
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|
}
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|
const text = await response.text();
|
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@@ -1 +1 @@
|
|
|
1
|
-
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|
|
1
|
+
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|
package/manifest.json
CHANGED
package/package.json
CHANGED
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@cyanheads/brapi-mcp-server",
|
|
3
3
|
"mcpName": "io.github.cyanheads/brapi-mcp-server",
|
|
4
|
-
"version": "0.8.
|
|
4
|
+
"version": "0.8.1",
|
|
5
5
|
"description": "A collaborative BrAPI v2.1 workspace for multi-agent research via MCP. Search studies, germplasm, genotypes, & more - across Breedbase, T3, Sweetpotatobase, & any BrAPI v2-compliant server.",
|
|
6
6
|
"author": "Casey Hand <casey@caseyjhand.com> (https://caseyjhand.com)",
|
|
7
7
|
"type": "module",
|
|
@@ -13,6 +13,7 @@
|
|
|
13
13
|
"files": [
|
|
14
14
|
"changelog/",
|
|
15
15
|
"dist/",
|
|
16
|
+
"!dist/*.mcpb",
|
|
16
17
|
"README.md",
|
|
17
18
|
"LICENSE",
|
|
18
19
|
"CLAUDE.md",
|
|
@@ -88,24 +89,24 @@
|
|
|
88
89
|
"node": ">=24.0.0",
|
|
89
90
|
"bun": ">=1.4.0"
|
|
90
91
|
},
|
|
91
|
-
"packageManager": "bun@1.4.
|
|
92
|
+
"packageManager": "bun@1.4.2",
|
|
92
93
|
"publishConfig": {
|
|
93
94
|
"access": "public"
|
|
94
95
|
},
|
|
95
96
|
"dependencies": {
|
|
96
|
-
"@cyanheads/mcp-ts-core": "^0.13.
|
|
97
|
-
"@duckdb/node-api": "^1.5.
|
|
97
|
+
"@cyanheads/mcp-ts-core": "^0.13.11",
|
|
98
|
+
"@duckdb/node-api": "^1.5.6-r.1",
|
|
98
99
|
"pino-pretty": "^13.1.3",
|
|
99
100
|
"zod": "^4.6.5"
|
|
100
101
|
},
|
|
101
102
|
"devDependencies": {
|
|
102
|
-
"@biomejs/biome": "^2.5.
|
|
103
|
-
"@socketsecurity/bun-security-scanner": "^1.1.
|
|
104
|
-
"@types/node": "^26.6.
|
|
103
|
+
"@biomejs/biome": "^2.5.15",
|
|
104
|
+
"@socketsecurity/bun-security-scanner": "^1.1.3",
|
|
105
|
+
"@types/node": "^26.6.3",
|
|
105
106
|
"depcheck": "^1.4.7",
|
|
106
|
-
"ignore": "^7.0.
|
|
107
|
-
"tsc-alias": "^1.9.
|
|
107
|
+
"ignore": "^7.0.11",
|
|
108
|
+
"tsc-alias": "^1.9.7",
|
|
108
109
|
"typescript": "^7.0.2",
|
|
109
|
-
"vitest": "^5.0.
|
|
110
|
+
"vitest": "^5.0.3"
|
|
110
111
|
}
|
|
111
112
|
}
|
package/server.json
CHANGED
|
@@ -6,18 +6,14 @@
|
|
|
6
6
|
"url": "https://github.com/cyanheads/brapi-mcp-server",
|
|
7
7
|
"source": "github"
|
|
8
8
|
},
|
|
9
|
-
"version": "0.8.
|
|
9
|
+
"version": "0.8.1",
|
|
10
10
|
"packages": [
|
|
11
11
|
{
|
|
12
12
|
"registryType": "npm",
|
|
13
13
|
"registryBaseUrl": "https://registry.npmjs.org",
|
|
14
14
|
"identifier": "@cyanheads/brapi-mcp-server",
|
|
15
|
-
"runtimeHint": "
|
|
16
|
-
"version": "0.8.
|
|
17
|
-
"packageArguments": [
|
|
18
|
-
{ "type": "positional", "value": "run" },
|
|
19
|
-
{ "type": "positional", "value": "start:stdio" }
|
|
20
|
-
],
|
|
15
|
+
"runtimeHint": "npx",
|
|
16
|
+
"version": "0.8.1",
|
|
21
17
|
"environmentVariables": [
|
|
22
18
|
{
|
|
23
19
|
"name": "BRAPI_DEFAULT_BASE_URL",
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@@ -55,13 +51,15 @@
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55
51
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"registryType": "npm",
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|
56
52
|
"registryBaseUrl": "https://registry.npmjs.org",
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|
57
53
|
"identifier": "@cyanheads/brapi-mcp-server",
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|
58
|
-
"runtimeHint": "
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|
59
|
-
"version": "0.8.
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|
60
|
-
"packageArguments": [
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|
61
|
-
{ "type": "positional", "value": "run" },
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|
62
|
-
{ "type": "positional", "value": "start:http" }
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|
63
|
-
],
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|
54
|
+
"runtimeHint": "npx",
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|
55
|
+
"version": "0.8.1",
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|
64
56
|
"environmentVariables": [
|
|
57
|
+
{
|
|
58
|
+
"name": "MCP_TRANSPORT_TYPE",
|
|
59
|
+
"description": "Selects the HTTP transport.",
|
|
60
|
+
"format": "string",
|
|
61
|
+
"value": "http"
|
|
62
|
+
},
|
|
65
63
|
{
|
|
66
64
|
"name": "BRAPI_DEFAULT_BASE_URL",
|
|
67
65
|
"description": "Default BrAPI v2 base URL. Optional — connections can be opened at runtime via the brapi_connect tool instead.",
|