@cyanheads/brapi-mcp-server 0.7.9 → 0.7.11
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/CLAUDE.md +18 -13
- package/Dockerfile +19 -5
- package/README.md +6 -3
- package/changelog/0.7.x/0.7.10.md +12 -0
- package/changelog/0.7.x/0.7.11.md +43 -0
- package/changelog/template.md +55 -16
- package/dist/config/alias-credentials.js.map +1 -1
- package/dist/config/builtin-aliases.js.map +1 -1
- package/dist/mcp-server/resources/definitions/brapi-calls.resource.d.ts +3 -3
- package/dist/mcp-server/resources/definitions/brapi-calls.resource.d.ts.map +1 -1
- package/dist/mcp-server/resources/definitions/brapi-filters.resource.d.ts +3 -3
- package/dist/mcp-server/resources/definitions/brapi-filters.resource.d.ts.map +1 -1
- package/dist/mcp-server/resources/definitions/brapi-germplasm.resource.d.ts +6 -6
- package/dist/mcp-server/resources/definitions/brapi-germplasm.resource.d.ts.map +1 -1
- package/dist/mcp-server/resources/definitions/brapi-server-info.resource.d.ts +3 -3
- package/dist/mcp-server/resources/definitions/brapi-server-info.resource.d.ts.map +1 -1
- package/dist/mcp-server/resources/definitions/brapi-study.resource.d.ts +6 -6
- package/dist/mcp-server/resources/definitions/brapi-study.resource.d.ts.map +1 -1
- package/dist/mcp-server/resources/definitions/brapi-variable.resource.d.ts +6 -6
- package/dist/mcp-server/resources/definitions/brapi-variable.resource.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-build-phenotype-matrix.tool.d.ts +19 -14
- package/dist/mcp-server/tools/definitions/brapi-build-phenotype-matrix.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-build-phenotype-matrix.tool.js +59 -19
- package/dist/mcp-server/tools/definitions/brapi-build-phenotype-matrix.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-connect.tool.d.ts +12 -12
- package/dist/mcp-server/tools/definitions/brapi-connect.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-dataframe-describe.tool.d.ts +2 -2
- package/dist/mcp-server/tools/definitions/brapi-dataframe-describe.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-dataframe-export.tool.d.ts +14 -14
- package/dist/mcp-server/tools/definitions/brapi-dataframe-export.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-dataframe-query.tool.d.ts +9 -4
- package/dist/mcp-server/tools/definitions/brapi-dataframe-query.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-dataframe-query.tool.js +31 -0
- package/dist/mcp-server/tools/definitions/brapi-dataframe-query.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-describe-filters.tool.d.ts +6 -6
- package/dist/mcp-server/tools/definitions/brapi-describe-filters.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-export-genotype-matrix.tool.d.ts +11 -11
- package/dist/mcp-server/tools/definitions/brapi-export-genotype-matrix.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.d.ts +11 -11
- package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-find-germplasm.tool.d.ts +6 -6
- package/dist/mcp-server/tools/definitions/brapi-find-germplasm.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-find-images.tool.d.ts +6 -6
- package/dist/mcp-server/tools/definitions/brapi-find-images.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-find-locations.tool.d.ts +6 -6
- package/dist/mcp-server/tools/definitions/brapi-find-locations.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-find-observations.tool.d.ts +6 -6
- package/dist/mcp-server/tools/definitions/brapi-find-observations.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-find-studies.tool.d.ts +6 -6
- package/dist/mcp-server/tools/definitions/brapi-find-studies.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-find-variables.tool.d.ts +7 -7
- package/dist/mcp-server/tools/definitions/brapi-find-variables.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-find-variants.tool.d.ts +6 -6
- package/dist/mcp-server/tools/definitions/brapi-find-variants.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-germplasm-performance.tool.d.ts +6 -6
- package/dist/mcp-server/tools/definitions/brapi-germplasm-performance.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-germplasm-performance.tool.js +27 -28
- package/dist/mcp-server/tools/definitions/brapi-germplasm-performance.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-get-germplasm.tool.d.ts +6 -6
- package/dist/mcp-server/tools/definitions/brapi-get-germplasm.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-get-image.tool.d.ts +6 -6
- package/dist/mcp-server/tools/definitions/brapi-get-image.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-get-study.tool.d.ts +6 -6
- package/dist/mcp-server/tools/definitions/brapi-get-study.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-raw-get.tool.d.ts +6 -6
- package/dist/mcp-server/tools/definitions/brapi-raw-get.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-raw-search.tool.d.ts +7 -7
- package/dist/mcp-server/tools/definitions/brapi-raw-search.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-server-info.tool.d.ts +9 -9
- package/dist/mcp-server/tools/definitions/brapi-server-info.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-submit-observations.tool.d.ts +23 -27
- package/dist/mcp-server/tools/definitions/brapi-submit-observations.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-submit-observations.tool.js +41 -55
- package/dist/mcp-server/tools/definitions/brapi-submit-observations.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-walk-pedigree.tool.d.ts +8 -8
- package/dist/mcp-server/tools/definitions/brapi-walk-pedigree.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/index.d.ts +829 -824
- package/dist/mcp-server/tools/definitions/index.d.ts.map +1 -1
- package/dist/mcp-server/tools/shared/find-helpers.js.map +1 -1
- package/dist/mcp-server/tools/shared/observations.d.ts +67 -0
- package/dist/mcp-server/tools/shared/observations.d.ts.map +1 -1
- package/dist/mcp-server/tools/shared/observations.js +56 -0
- package/dist/mcp-server/tools/shared/observations.js.map +1 -1
- package/dist/mcp-server/tools/shared/orientation-envelope.d.ts +12 -12
- package/dist/services/brapi-client/brapi-client.d.ts +2 -3
- package/dist/services/brapi-client/brapi-client.d.ts.map +1 -1
- package/dist/services/brapi-client/brapi-client.js +11 -14
- package/dist/services/brapi-client/brapi-client.js.map +1 -1
- package/dist/services/brapi-client/types.d.ts +1 -1
- package/dist/services/brapi-dialect/detect.js.map +1 -1
- package/dist/services/brapi-dialect/index.js.map +1 -1
- package/dist/services/canvas-bridge/canvas-bridge.d.ts +1 -1
- package/dist/services/canvas-bridge/canvas-bridge.d.ts.map +1 -1
- package/dist/services/canvas-bridge/canvas-bridge.js.map +1 -1
- package/dist/services/capability-registry/capability-registry.d.ts.map +1 -1
- package/dist/services/capability-registry/capability-registry.js.map +1 -1
- package/dist/services/ontology-resolver/ontology-resolver.d.ts.map +1 -1
- package/dist/services/ontology-resolver/ontology-resolver.js.map +1 -1
- package/dist/services/reference-data-cache/reference-data-cache.d.ts.map +1 -1
- package/dist/services/reference-data-cache/reference-data-cache.js.map +1 -1
- package/dist/services/server-registry/server-registry.d.ts.map +1 -1
- package/dist/services/server-registry/server-registry.js.map +1 -1
- package/manifest.json +1 -1
- package/package.json +11 -11
- package/server.json +3 -3
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{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../src/services/brapi-dialect/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAIH,OAAO,EAAE,qBAAqB,EAAE,MAAM,yCAAyC,CAAC;AAEhF,OAAO,EAAE,eAAe,EAAE,MAAM,aAAa,CAAC;AAC9C,OAAO,EAAE,cAAc,EAAE,MAAM,eAAe,CAAC;AAG/C,OAAO,EAAE,UAAU,EAAE,MAAM,kBAAkB,CAAC;AAC9C,OAAO,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAC;AAC3D,OAAO,EAAE,gBAAgB,EAAE,kBAAkB,EAAE,MAAM,0BAA0B,CAAC;AAChF,OAAO,EAGL,qBAAqB,EACrB,eAAe,EACf,aAAa,EACb,mBAAmB,GACpB,MAAM,aAAa,CAAC;AACrB,OAAO,EACL,cAAc,EACd,wBAAwB,EACxB,wBAAwB,EACxB,eAAe,EACf,yBAAyB,GAC1B,MAAM,eAAe,CAAC;AACvB,OAAO,EAAE,WAAW,EAAE,MAAM,mBAAmB,CAAC;AAGhD;;;;;GAKG;AACH,MAAM,CAAC,KAAK,UAAU,cAAc,CAClC,UAA4B,EAC5B,GAAY,EACZ,OAAO,GAAwC,EAAE;IAEjD,MAAM,MAAM,GAA4B,EAAE,CAAC;IAC3C,IAAI,OAAO,CAAC,IAAI;QAAE,MAAM,CAAC,IAAI,GAAG,OAAO,CAAC,IAAI,CAAC;IAC7C,MAAM,OAAO,GAAG,MAAM,qBAAqB,EAAE,CAAC,OAAO,CAAC,UAAU,CAAC,OAAO,EAAE,GAAG,EAAE,MAAM,CAAC,CAAC;IACvF,OAAO,cAAc,CAAC,eAAe,CAAC,UAAU,CAAC,KAAK,EAAE,OAAO,CAAC,CAAC,EAAE,CAAC,CAAC;AACvE,CAAC"}
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export declare const SYSTEM_CATALOG_ACCESS_REASON: 'system_catalog_access';
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1
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|
package/manifest.json
CHANGED
package/package.json
CHANGED
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@cyanheads/brapi-mcp-server",
|
|
3
3
|
"mcpName": "io.github.cyanheads/brapi-mcp-server",
|
|
4
|
-
"version": "0.7.
|
|
4
|
+
"version": "0.7.11",
|
|
5
5
|
"description": "A collaborative BrAPI v2.1 workspace for multi-agent research via MCP. Search studies, germplasm, genotypes, & more - across Breedbase, T3, Sweetpotatobase, & any BrAPI v2-compliant server.",
|
|
6
6
|
"author": "Casey Hand <casey@caseyjhand.com> (https://caseyjhand.com)",
|
|
7
7
|
"type": "module",
|
|
@@ -31,12 +31,12 @@
|
|
|
31
31
|
"lint:mcp": "bun run scripts/lint-mcp.ts",
|
|
32
32
|
"lint:packaging": "bun run scripts/lint-packaging.ts",
|
|
33
33
|
"list-skills": "bun run scripts/list-skills.ts",
|
|
34
|
-
"bundle": "bun run build &&
|
|
34
|
+
"bundle": "bun run build && npx -y @anthropic-ai/mcpb pack . dist/brapi-mcp-server.mcpb && bun run scripts/clean-mcpb.ts dist/brapi-mcp-server.mcpb",
|
|
35
35
|
"audit:refresh": "rm -f bun.lock && bun install && bun audit",
|
|
36
36
|
"changelog:build": "bun run scripts/build-changelog.ts",
|
|
37
37
|
"changelog:check": "bun run scripts/build-changelog.ts --check",
|
|
38
38
|
"release:github": "bun run scripts/release-github.ts",
|
|
39
|
-
"test": "
|
|
39
|
+
"test": "vitest run",
|
|
40
40
|
"publish-mcp": "mcp-publisher login github -token \"$(security find-generic-password -a \"$USER\" -s mcp-publisher-github-pat -w)\" && mcp-publisher publish",
|
|
41
41
|
"start": "bun ./dist/index.js",
|
|
42
42
|
"start:stdio": "MCP_TRANSPORT_TYPE=stdio bun ./dist/index.js",
|
|
@@ -76,24 +76,24 @@
|
|
|
76
76
|
"node": ">=24.0.0",
|
|
77
77
|
"bun": ">=1.3.0"
|
|
78
78
|
},
|
|
79
|
-
"packageManager": "bun@1.
|
|
79
|
+
"packageManager": "bun@1.4.0",
|
|
80
80
|
"publishConfig": {
|
|
81
81
|
"access": "public"
|
|
82
82
|
},
|
|
83
83
|
"dependencies": {
|
|
84
|
-
"@cyanheads/mcp-ts-core": "^0.
|
|
85
|
-
"@duckdb/node-api": "^1.5.
|
|
84
|
+
"@cyanheads/mcp-ts-core": "^0.12.3",
|
|
85
|
+
"@duckdb/node-api": "^1.5.5-r.4",
|
|
86
86
|
"pino-pretty": "^13.1.3",
|
|
87
87
|
"zod": "^4.4.3"
|
|
88
88
|
},
|
|
89
89
|
"devDependencies": {
|
|
90
|
-
"@biomejs/biome": "^2.5.
|
|
90
|
+
"@biomejs/biome": "^2.5.9",
|
|
91
91
|
"@socketsecurity/bun-security-scanner": "^1.1.2",
|
|
92
|
-
"@types/node": "^26.
|
|
92
|
+
"@types/node": "^26.2.0",
|
|
93
93
|
"depcheck": "^1.4.7",
|
|
94
94
|
"ignore": "^7.0.6",
|
|
95
|
-
"tsc-alias": "^1.9.
|
|
96
|
-
"typescript": "^
|
|
97
|
-
"vitest": "^4.1.
|
|
95
|
+
"tsc-alias": "^1.9.2",
|
|
96
|
+
"typescript": "^7.0.2",
|
|
97
|
+
"vitest": "^4.1.11"
|
|
98
98
|
}
|
|
99
99
|
}
|
package/server.json
CHANGED
|
@@ -6,14 +6,14 @@
|
|
|
6
6
|
"url": "https://github.com/cyanheads/brapi-mcp-server",
|
|
7
7
|
"source": "github"
|
|
8
8
|
},
|
|
9
|
-
"version": "0.7.
|
|
9
|
+
"version": "0.7.11",
|
|
10
10
|
"packages": [
|
|
11
11
|
{
|
|
12
12
|
"registryType": "npm",
|
|
13
13
|
"registryBaseUrl": "https://registry.npmjs.org",
|
|
14
14
|
"identifier": "@cyanheads/brapi-mcp-server",
|
|
15
15
|
"runtimeHint": "bun",
|
|
16
|
-
"version": "0.7.
|
|
16
|
+
"version": "0.7.11",
|
|
17
17
|
"packageArguments": [
|
|
18
18
|
{ "type": "positional", "value": "run" },
|
|
19
19
|
{ "type": "positional", "value": "start:stdio" }
|
|
@@ -56,7 +56,7 @@
|
|
|
56
56
|
"registryBaseUrl": "https://registry.npmjs.org",
|
|
57
57
|
"identifier": "@cyanheads/brapi-mcp-server",
|
|
58
58
|
"runtimeHint": "bun",
|
|
59
|
-
"version": "0.7.
|
|
59
|
+
"version": "0.7.11",
|
|
60
60
|
"packageArguments": [
|
|
61
61
|
{ "type": "positional", "value": "run" },
|
|
62
62
|
{ "type": "positional", "value": "start:http" }
|