@cyanheads/brapi-mcp-server 0.7.2 → 0.7.4

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (60) hide show
  1. package/CLAUDE.md +2 -2
  2. package/Dockerfile +6 -0
  3. package/README.md +3 -2
  4. package/changelog/0.7.x/0.7.3.md +22 -0
  5. package/changelog/0.7.x/0.7.4.md +27 -0
  6. package/dist/config/server-config.d.ts +5 -16
  7. package/dist/config/server-config.d.ts.map +1 -1
  8. package/dist/config/server-config.js +16 -13
  9. package/dist/config/server-config.js.map +1 -1
  10. package/dist/index.js +2 -0
  11. package/dist/index.js.map +1 -1
  12. package/dist/mcp-server/tools/definitions/brapi-build-phenotype-matrix.tool.d.ts +1 -0
  13. package/dist/mcp-server/tools/definitions/brapi-build-phenotype-matrix.tool.d.ts.map +1 -1
  14. package/dist/mcp-server/tools/definitions/brapi-export-genotype-matrix.tool.d.ts +1 -0
  15. package/dist/mcp-server/tools/definitions/brapi-export-genotype-matrix.tool.d.ts.map +1 -1
  16. package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.d.ts +1 -0
  17. package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.d.ts.map +1 -1
  18. package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.js +3 -2
  19. package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.js.map +1 -1
  20. package/dist/mcp-server/tools/definitions/brapi-find-germplasm.tool.d.ts +1 -0
  21. package/dist/mcp-server/tools/definitions/brapi-find-germplasm.tool.d.ts.map +1 -1
  22. package/dist/mcp-server/tools/definitions/brapi-find-germplasm.tool.js +3 -2
  23. package/dist/mcp-server/tools/definitions/brapi-find-germplasm.tool.js.map +1 -1
  24. package/dist/mcp-server/tools/definitions/brapi-find-images.tool.d.ts +1 -0
  25. package/dist/mcp-server/tools/definitions/brapi-find-images.tool.d.ts.map +1 -1
  26. package/dist/mcp-server/tools/definitions/brapi-find-images.tool.js +3 -2
  27. package/dist/mcp-server/tools/definitions/brapi-find-images.tool.js.map +1 -1
  28. package/dist/mcp-server/tools/definitions/brapi-find-locations.tool.d.ts +1 -0
  29. package/dist/mcp-server/tools/definitions/brapi-find-locations.tool.d.ts.map +1 -1
  30. package/dist/mcp-server/tools/definitions/brapi-find-locations.tool.js +3 -2
  31. package/dist/mcp-server/tools/definitions/brapi-find-locations.tool.js.map +1 -1
  32. package/dist/mcp-server/tools/definitions/brapi-find-observations.tool.d.ts +1 -0
  33. package/dist/mcp-server/tools/definitions/brapi-find-observations.tool.d.ts.map +1 -1
  34. package/dist/mcp-server/tools/definitions/brapi-find-observations.tool.js +3 -2
  35. package/dist/mcp-server/tools/definitions/brapi-find-observations.tool.js.map +1 -1
  36. package/dist/mcp-server/tools/definitions/brapi-find-studies.tool.d.ts +1 -0
  37. package/dist/mcp-server/tools/definitions/brapi-find-studies.tool.d.ts.map +1 -1
  38. package/dist/mcp-server/tools/definitions/brapi-find-studies.tool.js +2 -2
  39. package/dist/mcp-server/tools/definitions/brapi-find-studies.tool.js.map +1 -1
  40. package/dist/mcp-server/tools/definitions/brapi-find-variables.tool.d.ts +1 -0
  41. package/dist/mcp-server/tools/definitions/brapi-find-variables.tool.d.ts.map +1 -1
  42. package/dist/mcp-server/tools/definitions/brapi-find-variables.tool.js +3 -2
  43. package/dist/mcp-server/tools/definitions/brapi-find-variables.tool.js.map +1 -1
  44. package/dist/mcp-server/tools/definitions/brapi-find-variants.tool.d.ts +1 -0
  45. package/dist/mcp-server/tools/definitions/brapi-find-variants.tool.d.ts.map +1 -1
  46. package/dist/mcp-server/tools/definitions/brapi-find-variants.tool.js +3 -2
  47. package/dist/mcp-server/tools/definitions/brapi-find-variants.tool.js.map +1 -1
  48. package/dist/mcp-server/tools/definitions/brapi-raw-get.tool.d.ts +1 -0
  49. package/dist/mcp-server/tools/definitions/brapi-raw-get.tool.d.ts.map +1 -1
  50. package/dist/mcp-server/tools/definitions/brapi-raw-search.tool.d.ts +1 -0
  51. package/dist/mcp-server/tools/definitions/brapi-raw-search.tool.d.ts.map +1 -1
  52. package/dist/mcp-server/tools/definitions/index.d.ts +12 -0
  53. package/dist/mcp-server/tools/definitions/index.d.ts.map +1 -1
  54. package/dist/mcp-server/tools/shared/find-helpers.d.ts +23 -3
  55. package/dist/mcp-server/tools/shared/find-helpers.d.ts.map +1 -1
  56. package/dist/mcp-server/tools/shared/find-helpers.js +48 -10
  57. package/dist/mcp-server/tools/shared/find-helpers.js.map +1 -1
  58. package/manifest.json +9 -1
  59. package/package.json +4 -4
  60. package/server.json +17 -3
package/package.json CHANGED
@@ -1,7 +1,7 @@
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  {
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  "name": "@cyanheads/brapi-mcp-server",
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  "mcpName": "io.github.cyanheads/brapi-mcp-server",
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- "version": "0.7.2",
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+ "version": "0.7.4",
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  "description": "A collaborative BrAPI v2.1 workspace for multi-agent research via MCP. Search studies, germplasm, genotypes, & more - across Breedbase, T3, Sweetpotatobase, & any BrAPI v2-compliant server.",
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  "author": "Casey Hand @cyanheads (https://github.com/cyanheads/brapi-mcp-server#readme)",
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  "type": "module",
@@ -31,7 +31,7 @@
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  "lint:mcp": "bun run scripts/lint-mcp.ts",
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  "lint:packaging": "bun run scripts/lint-packaging.ts",
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  "list-skills": "bun run scripts/list-skills.ts",
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- "bundle": "bun run build && bunx -y @anthropic-ai/mcpb pack . dist/brapi-mcp-server.mcpb",
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+ "bundle": "bun run build && bunx -y @anthropic-ai/mcpb pack . dist/brapi-mcp-server.mcpb && bun run scripts/clean-mcpb.ts dist/brapi-mcp-server.mcpb",
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  "audit:refresh": "rm -f bun.lock && bun install && bun audit",
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  "changelog:build": "bun run scripts/build-changelog.ts",
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  "changelog:check": "bun run scripts/build-changelog.ts --check",
@@ -81,14 +81,14 @@
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  "access": "public"
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  },
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  "dependencies": {
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- "@cyanheads/mcp-ts-core": "^0.9.21",
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+ "@cyanheads/mcp-ts-core": "^0.10.6",
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  "@duckdb/node-api": "^1.5.3-r.3",
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  "pino-pretty": "^13.1.3",
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  "zod": "^4.4.3"
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  },
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  "devDependencies": {
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  "@biomejs/biome": "^2.4.16",
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- "@types/node": "^25.9.1",
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+ "@types/node": "^25.9.3",
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  "depcheck": "^1.4.7",
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  "ignore": "^7.0.5",
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  "tsc-alias": "^1.8.17",
package/server.json CHANGED
@@ -6,14 +6,14 @@
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  "url": "https://github.com/cyanheads/brapi-mcp-server",
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  "source": "github"
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  },
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- "version": "0.7.2",
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+ "version": "0.7.4",
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  "packages": [
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  {
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  "registryType": "npm",
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  "registryBaseUrl": "https://registry.npmjs.org",
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  "identifier": "@cyanheads/brapi-mcp-server",
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  "runtimeHint": "bun",
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- "version": "0.7.2",
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+ "version": "0.7.4",
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  "packageArguments": [
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  { "type": "positional", "value": "run" },
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  { "type": "positional", "value": "start:stdio" }
@@ -32,6 +32,13 @@
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  "isRequired": false,
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  "default": "false"
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  },
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+ {
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+ "name": "BRAPI_PAGE_SIZE",
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+ "description": "Upstream pageSize used during canvas spillover walks (decoupled from BRAPI_LOAD_LIMIT). Dataframe ceiling = pageSize × 50 pages.",
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+ "format": "string",
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+ "isRequired": false,
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+ "default": "1000"
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+ },
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  {
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  "name": "MCP_LOG_LEVEL",
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  "description": "Sets the minimum log level for output (e.g., 'debug', 'info', 'warn').",
@@ -49,7 +56,7 @@
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  "registryBaseUrl": "https://registry.npmjs.org",
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  "identifier": "@cyanheads/brapi-mcp-server",
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  "runtimeHint": "bun",
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- "version": "0.7.2",
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+ "version": "0.7.4",
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  "packageArguments": [
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  { "type": "positional", "value": "run" },
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  { "type": "positional", "value": "start:http" }
@@ -68,6 +75,13 @@
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  "isRequired": false,
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  "default": "false"
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  },
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+ {
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+ "name": "BRAPI_PAGE_SIZE",
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+ "description": "Upstream pageSize used during canvas spillover walks (decoupled from BRAPI_LOAD_LIMIT). Dataframe ceiling = pageSize × 50 pages.",
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+ "format": "string",
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+ "isRequired": false,
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+ "default": "1000"
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+ },
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  {
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  "name": "MCP_HTTP_HOST",
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  "description": "The hostname for the HTTP server.",