@cyanheads/brapi-mcp-server 0.7.13 → 0.8.1

package/dist/services/server-registry/server-registry.d.ts

@@ -22,17 +22,31 @@ export declare class ServerRegistry {
     private readonly tokenFetcher;
     constructor(serverConfig: ServerConfig, tokenFetcher?: TokenFetcher);
     /**
-     * Register a connection under an alias. Resolves the auth mode to a
-     * ready-to-use header (performing token exchange for `sgn` / `oauth2`) and
-     * persists the result in `ctx.state`.
+     * Register a connection under an alias: {@link resolve} then {@link save}.
      */
     register(ctx: Context, input: RegisterInput): Promise<RegisteredServer>;
+    /**
+     * Validate the alias and base URL and resolve the auth mode to a
+     * ready-to-use header (performing token exchange for `sgn` / `oauth2`),
+     * without persisting anything — callers that must verify the connection
+     * first save it only once it works, so a failure leaves any previous
+     * registration under the alias intact.
+     */
+    resolve(ctx: Context, input: RegisterInput): Promise<RegisteredServer>;
+    /** Persist a resolved connection under its alias, replacing any previous one. */
+    save(ctx: Context, registered: RegisteredServer): Promise<void>;
     /** Fetch a registered connection or throw `NotFound`. */
     get(ctx: Context, alias?: string): Promise<RegisteredServer>;
     /** Non-throwing variant of `get`. */
     getOptional(ctx: Context, alias?: string): Promise<RegisteredServer | null>;
     list(ctx: Context): Promise<RegisteredServer[]>;
     unregister(ctx: Context, alias?: string): Promise<void>;
+    /**
+     * True when session isolation is on but this request carries no session ID
+     * to scope on, so its connections land in the tenant-wide namespace that
+     * every other session-less caller in the tenant reads and overwrites.
+     */
+    isolationFallsBackToShared(ctx: Context): boolean;
     /**
      * Resolve the state-key prefix for the current ctx. Under
      * `BRAPI_SESSION_ISOLATION=true` (default) and a present `ctx.sessionId`

package/dist/services/server-registry/server-registry.d.ts.map

@@ -1 +1 @@
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package/dist/services/server-registry/server-registry.js

@@ -21,11 +21,21 @@ export class ServerRegistry {
         this.tokenFetcher = tokenFetcher;
     }
     /**
-     * Register a connection under an alias. Resolves the auth mode to a
-     * ready-to-use header (performing token exchange for `sgn` / `oauth2`) and
-     * persists the result in `ctx.state`.
+     * Register a connection under an alias: {@link resolve} then {@link save}.
      */
     async register(ctx, input) {
+        const registered = await this.resolve(ctx, input);
+        await this.save(ctx, registered);
+        return registered;
+    }
+    /**
+     * Validate the alias and base URL and resolve the auth mode to a
+     * ready-to-use header (performing token exchange for `sgn` / `oauth2`),
+     * without persisting anything — callers that must verify the connection
+     * first save it only once it works, so a failure leaves any previous
+     * registration under the alias intact.
+     */
+    async resolve(ctx, input) {
         const alias = input.alias?.trim() || DEFAULT_ALIAS;
         validateAlias(alias);
         validateBaseUrl(input.baseUrl);
@@ -39,9 +49,12 @@ export class ServerRegistry {
         const resolvedAuth = await this.resolveAuth(auth, registered.baseUrl, ctx);
         if (resolvedAuth)
             registered.resolvedAuth = resolvedAuth;
-        await ctx.state.set(this.connKey(ctx, alias), registered);
         return registered;
     }
+    /** Persist a resolved connection under its alias, replacing any previous one. */
+    async save(ctx, registered) {
+        await ctx.state.set(this.connKey(ctx, registered.alias), registered);
+    }
     /** Fetch a registered connection or throw `NotFound`. */
     async get(ctx, alias = DEFAULT_ALIAS) {
         const entry = await ctx.state.get(this.connKey(ctx, alias));
@@ -74,6 +87,14 @@ export class ServerRegistry {
     async unregister(ctx, alias = DEFAULT_ALIAS) {
         await ctx.state.delete(this.connKey(ctx, alias));
     }
+    /**
+     * True when session isolation is on but this request carries no session ID
+     * to scope on, so its connections land in the tenant-wide namespace that
+     * every other session-less caller in the tenant reads and overwrites.
+     */
+    isolationFallsBackToShared(ctx) {
+        return this.serverConfig.sessionIsolation === true && !ctx.sessionId;
+    }
     /**
      * Resolve the state-key prefix for the current ctx. Under
      * `BRAPI_SESSION_ISOLATION=true` (default) and a present `ctx.sessionId`
@@ -128,7 +149,6 @@ export class ServerRegistry {
                 tokenUrl,
                 payloadKeys: Object.keys(payload),
                 reason: 'auth_no_access_token',
-                ...ctx.recoveryFor('auth_no_access_token'),
             });
         }
         const resolved = {
@@ -155,7 +175,6 @@ export class ServerRegistry {
                 tokenUrl,
                 payloadKeys: Object.keys(payload),
                 reason: 'auth_no_access_token',
-                ...ctx.recoveryFor('auth_no_access_token'),
             });
         }
         const tokenType = typeof payload.token_type === 'string' && payload.token_type.trim()
@@ -194,7 +213,6 @@ const defaultTokenFetcher = async (url, body, ctx, options) => {
         throw forbidden(`Token exchange failed at ${url}. Verify credentials and that the server exposes /token.`, {
             tokenUrl: url,
             reason: 'auth_token_exchange_failed',
-            ...ctx.recoveryFor('auth_token_exchange_failed'),
         }, { cause: err });
     }
     const text = await response.text();
@@ -226,6 +244,11 @@ function validateBaseUrl(baseUrl) {
             baseUrl,
         });
     }
+    // Userinfo is never sent upstream as auth, but a stored baseUrl is echoed and
+    // logged, so it is refused rather than kept. The URL is not echoed back.
+    if (parsed.username || parsed.password) {
+        throw validationError('Invalid baseUrl: credentials in the URL (user:password@host) are not supported. Pass them in `auth`, or configure them server-side for the alias.');
+    }
 }
 function normalizeBaseUrl(baseUrl) {
     return baseUrl.replace(/\/+$/, '');

package/dist/services/server-registry/server-registry.js.map

@@ -1 +1 @@
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package/manifest.json

@@ -1,7 +1,7 @@
 {
   "manifest_version": "0.3",
   "name": "brapi-mcp-server",
-  "version": "0.7.13",
+  "version": "0.8.1",
   "description": "Collaborative BrAPI v2.1 MCP workspace — studies, germplasm, genotypes across Breedbase, T3, more.",
   "author": {
     "name": "cyanheads",

package/package.json

@@ -1,7 +1,7 @@
 {
   "name": "@cyanheads/brapi-mcp-server",
   "mcpName": "io.github.cyanheads/brapi-mcp-server",
-  "version": "0.7.13",
+  "version": "0.8.1",
   "description": "A collaborative BrAPI v2.1 workspace for multi-agent research via MCP. Search studies, germplasm, genotypes, & more - across Breedbase, T3, Sweetpotatobase, & any BrAPI v2-compliant server.",
   "author": "Casey Hand <casey@caseyjhand.com> (https://caseyjhand.com)",
   "type": "module",
@@ -13,6 +13,7 @@
   "files": [
     "changelog/",
     "dist/",
+    "!dist/*.mcpb",
     "README.md",
     "LICENSE",
     "CLAUDE.md",
@@ -88,24 +89,24 @@
     "node": ">=24.0.0",
     "bun": ">=1.4.0"
   },
-  "packageManager": "bun@1.4.0",
+  "packageManager": "bun@1.4.2",
   "publishConfig": {
     "access": "public"
   },
   "dependencies": {
-    "@cyanheads/mcp-ts-core": "^0.13.6",
-    "@duckdb/node-api": "^1.5.5-r.5",
+    "@cyanheads/mcp-ts-core": "^0.13.11",
+    "@duckdb/node-api": "^1.5.6-r.1",
     "pino-pretty": "^13.1.3",
     "zod": "^4.6.5"
   },
   "devDependencies": {
-    "@biomejs/biome": "^2.5.14",
-    "@socketsecurity/bun-security-scanner": "^1.1.2",
-    "@types/node": "^26.5.1",
+    "@biomejs/biome": "^2.5.15",
+    "@socketsecurity/bun-security-scanner": "^1.1.3",
+    "@types/node": "^26.6.3",
     "depcheck": "^1.4.7",
-    "ignore": "^7.0.9",
-    "tsc-alias": "^1.9.5",
+    "ignore": "^7.0.11",
+    "tsc-alias": "^1.9.7",
     "typescript": "^7.0.2",
-    "vitest": "^5.0.1"
+    "vitest": "^5.0.3"
   }
 }

package/server.json

@@ -6,18 +6,14 @@
     "url": "https://github.com/cyanheads/brapi-mcp-server",
     "source": "github"
   },
-  "version": "0.7.13",
+  "version": "0.8.1",
   "packages": [
     {
       "registryType": "npm",
       "registryBaseUrl": "https://registry.npmjs.org",
       "identifier": "@cyanheads/brapi-mcp-server",
-      "runtimeHint": "bun",
-      "version": "0.7.13",
-      "packageArguments": [
-        { "type": "positional", "value": "run" },
-        { "type": "positional", "value": "start:stdio" }
-      ],
+      "runtimeHint": "npx",
+      "version": "0.8.1",
       "environmentVariables": [
         {
           "name": "BRAPI_DEFAULT_BASE_URL",
@@ -55,13 +51,15 @@
       "registryType": "npm",
       "registryBaseUrl": "https://registry.npmjs.org",
       "identifier": "@cyanheads/brapi-mcp-server",
-      "runtimeHint": "bun",
-      "version": "0.7.13",
-      "packageArguments": [
-        { "type": "positional", "value": "run" },
-        { "type": "positional", "value": "start:http" }
-      ],
+      "runtimeHint": "npx",
+      "version": "0.8.1",
       "environmentVariables": [
+        {
+          "name": "MCP_TRANSPORT_TYPE",
+          "description": "Selects the HTTP transport.",
+          "format": "string",
+          "value": "http"
+        },
         {
           "name": "BRAPI_DEFAULT_BASE_URL",
           "description": "Default BrAPI v2 base URL. Optional — connections can be opened at runtime via the brapi_connect tool instead.",