@cyanheads/brapi-mcp-server 0.7.11 → 0.7.13

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (135) hide show
  1. package/AGENTS.md +453 -0
  2. package/CLAUDE.md +24 -16
  3. package/README.md +453 -136
  4. package/changelog/0.7.x/0.7.12.md +35 -0
  5. package/changelog/0.7.x/0.7.13.md +38 -0
  6. package/changelog/template.md +9 -26
  7. package/dist/config/alias-credentials.d.ts +1 -1
  8. package/dist/config/alias-credentials.d.ts.map +1 -1
  9. package/dist/config/alias-credentials.js +24 -8
  10. package/dist/config/alias-credentials.js.map +1 -1
  11. package/dist/config/server-config.d.ts +1 -1
  12. package/dist/config/server-config.d.ts.map +1 -1
  13. package/dist/config/server-config.js +3 -1
  14. package/dist/config/server-config.js.map +1 -1
  15. package/dist/index.js +7 -0
  16. package/dist/index.js.map +1 -1
  17. package/dist/mcp-server/resources/definitions/brapi-calls.resource.d.ts +1 -0
  18. package/dist/mcp-server/resources/definitions/brapi-calls.resource.d.ts.map +1 -1
  19. package/dist/mcp-server/resources/definitions/brapi-calls.resource.js +2 -1
  20. package/dist/mcp-server/resources/definitions/brapi-calls.resource.js.map +1 -1
  21. package/dist/mcp-server/resources/definitions/brapi-filters.resource.js +1 -1
  22. package/dist/mcp-server/resources/definitions/brapi-germplasm.resource.d.ts +1 -0
  23. package/dist/mcp-server/resources/definitions/brapi-germplasm.resource.d.ts.map +1 -1
  24. package/dist/mcp-server/resources/definitions/brapi-germplasm.resource.js +2 -1
  25. package/dist/mcp-server/resources/definitions/brapi-germplasm.resource.js.map +1 -1
  26. package/dist/mcp-server/resources/definitions/brapi-server-info.resource.d.ts +1 -0
  27. package/dist/mcp-server/resources/definitions/brapi-server-info.resource.d.ts.map +1 -1
  28. package/dist/mcp-server/resources/definitions/brapi-server-info.resource.js +2 -1
  29. package/dist/mcp-server/resources/definitions/brapi-server-info.resource.js.map +1 -1
  30. package/dist/mcp-server/resources/definitions/brapi-study.resource.d.ts +1 -0
  31. package/dist/mcp-server/resources/definitions/brapi-study.resource.d.ts.map +1 -1
  32. package/dist/mcp-server/resources/definitions/brapi-study.resource.js +2 -1
  33. package/dist/mcp-server/resources/definitions/brapi-study.resource.js.map +1 -1
  34. package/dist/mcp-server/resources/definitions/brapi-variable.resource.d.ts +1 -0
  35. package/dist/mcp-server/resources/definitions/brapi-variable.resource.d.ts.map +1 -1
  36. package/dist/mcp-server/resources/definitions/brapi-variable.resource.js +2 -1
  37. package/dist/mcp-server/resources/definitions/brapi-variable.resource.js.map +1 -1
  38. package/dist/mcp-server/tools/definitions/brapi-build-phenotype-matrix.tool.d.ts +2 -0
  39. package/dist/mcp-server/tools/definitions/brapi-build-phenotype-matrix.tool.d.ts.map +1 -1
  40. package/dist/mcp-server/tools/definitions/brapi-build-phenotype-matrix.tool.js +2 -0
  41. package/dist/mcp-server/tools/definitions/brapi-build-phenotype-matrix.tool.js.map +1 -1
  42. package/dist/mcp-server/tools/definitions/brapi-dataframe-export.tool.d.ts +1 -0
  43. package/dist/mcp-server/tools/definitions/brapi-dataframe-export.tool.d.ts.map +1 -1
  44. package/dist/mcp-server/tools/definitions/brapi-dataframe-export.tool.js +1 -0
  45. package/dist/mcp-server/tools/definitions/brapi-dataframe-export.tool.js.map +1 -1
  46. package/dist/mcp-server/tools/definitions/brapi-export-genotype-matrix.tool.d.ts +1 -0
  47. package/dist/mcp-server/tools/definitions/brapi-export-genotype-matrix.tool.d.ts.map +1 -1
  48. package/dist/mcp-server/tools/definitions/brapi-export-genotype-matrix.tool.js +1 -0
  49. package/dist/mcp-server/tools/definitions/brapi-export-genotype-matrix.tool.js.map +1 -1
  50. package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.d.ts +1 -0
  51. package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.d.ts.map +1 -1
  52. package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.js +1 -0
  53. package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.js.map +1 -1
  54. package/dist/mcp-server/tools/definitions/brapi-find-germplasm.tool.d.ts +2 -0
  55. package/dist/mcp-server/tools/definitions/brapi-find-germplasm.tool.d.ts.map +1 -1
  56. package/dist/mcp-server/tools/definitions/brapi-find-germplasm.tool.js +2 -0
  57. package/dist/mcp-server/tools/definitions/brapi-find-germplasm.tool.js.map +1 -1
  58. package/dist/mcp-server/tools/definitions/brapi-find-images.tool.d.ts +2 -0
  59. package/dist/mcp-server/tools/definitions/brapi-find-images.tool.d.ts.map +1 -1
  60. package/dist/mcp-server/tools/definitions/brapi-find-images.tool.js +2 -0
  61. package/dist/mcp-server/tools/definitions/brapi-find-images.tool.js.map +1 -1
  62. package/dist/mcp-server/tools/definitions/brapi-find-locations.tool.d.ts +2 -0
  63. package/dist/mcp-server/tools/definitions/brapi-find-locations.tool.d.ts.map +1 -1
  64. package/dist/mcp-server/tools/definitions/brapi-find-locations.tool.js +2 -0
  65. package/dist/mcp-server/tools/definitions/brapi-find-locations.tool.js.map +1 -1
  66. package/dist/mcp-server/tools/definitions/brapi-find-observations.tool.d.ts +2 -0
  67. package/dist/mcp-server/tools/definitions/brapi-find-observations.tool.d.ts.map +1 -1
  68. package/dist/mcp-server/tools/definitions/brapi-find-observations.tool.js +2 -0
  69. package/dist/mcp-server/tools/definitions/brapi-find-observations.tool.js.map +1 -1
  70. package/dist/mcp-server/tools/definitions/brapi-find-studies.tool.d.ts +2 -0
  71. package/dist/mcp-server/tools/definitions/brapi-find-studies.tool.d.ts.map +1 -1
  72. package/dist/mcp-server/tools/definitions/brapi-find-studies.tool.js +2 -0
  73. package/dist/mcp-server/tools/definitions/brapi-find-studies.tool.js.map +1 -1
  74. package/dist/mcp-server/tools/definitions/brapi-find-variables.tool.d.ts +2 -0
  75. package/dist/mcp-server/tools/definitions/brapi-find-variables.tool.d.ts.map +1 -1
  76. package/dist/mcp-server/tools/definitions/brapi-find-variables.tool.js +2 -0
  77. package/dist/mcp-server/tools/definitions/brapi-find-variables.tool.js.map +1 -1
  78. package/dist/mcp-server/tools/definitions/brapi-find-variants.tool.d.ts +2 -0
  79. package/dist/mcp-server/tools/definitions/brapi-find-variants.tool.d.ts.map +1 -1
  80. package/dist/mcp-server/tools/definitions/brapi-find-variants.tool.js +2 -0
  81. package/dist/mcp-server/tools/definitions/brapi-find-variants.tool.js.map +1 -1
  82. package/dist/mcp-server/tools/definitions/brapi-germplasm-performance.tool.d.ts +1 -0
  83. package/dist/mcp-server/tools/definitions/brapi-germplasm-performance.tool.d.ts.map +1 -1
  84. package/dist/mcp-server/tools/definitions/brapi-germplasm-performance.tool.js +1 -0
  85. package/dist/mcp-server/tools/definitions/brapi-germplasm-performance.tool.js.map +1 -1
  86. package/dist/mcp-server/tools/definitions/brapi-get-germplasm.tool.d.ts +1 -0
  87. package/dist/mcp-server/tools/definitions/brapi-get-germplasm.tool.d.ts.map +1 -1
  88. package/dist/mcp-server/tools/definitions/brapi-get-germplasm.tool.js +1 -0
  89. package/dist/mcp-server/tools/definitions/brapi-get-germplasm.tool.js.map +1 -1
  90. package/dist/mcp-server/tools/definitions/brapi-get-image.tool.d.ts +1 -0
  91. package/dist/mcp-server/tools/definitions/brapi-get-image.tool.d.ts.map +1 -1
  92. package/dist/mcp-server/tools/definitions/brapi-get-image.tool.js +1 -0
  93. package/dist/mcp-server/tools/definitions/brapi-get-image.tool.js.map +1 -1
  94. package/dist/mcp-server/tools/definitions/brapi-get-study.tool.d.ts +1 -0
  95. package/dist/mcp-server/tools/definitions/brapi-get-study.tool.d.ts.map +1 -1
  96. package/dist/mcp-server/tools/definitions/brapi-get-study.tool.js +1 -0
  97. package/dist/mcp-server/tools/definitions/brapi-get-study.tool.js.map +1 -1
  98. package/dist/mcp-server/tools/definitions/brapi-raw-get.tool.d.ts +1 -0
  99. package/dist/mcp-server/tools/definitions/brapi-raw-get.tool.d.ts.map +1 -1
  100. package/dist/mcp-server/tools/definitions/brapi-raw-get.tool.js +1 -0
  101. package/dist/mcp-server/tools/definitions/brapi-raw-get.tool.js.map +1 -1
  102. package/dist/mcp-server/tools/definitions/brapi-raw-search.tool.d.ts +1 -0
  103. package/dist/mcp-server/tools/definitions/brapi-raw-search.tool.d.ts.map +1 -1
  104. package/dist/mcp-server/tools/definitions/brapi-raw-search.tool.js +1 -0
  105. package/dist/mcp-server/tools/definitions/brapi-raw-search.tool.js.map +1 -1
  106. package/dist/mcp-server/tools/definitions/brapi-server-info.tool.d.ts +1 -0
  107. package/dist/mcp-server/tools/definitions/brapi-server-info.tool.d.ts.map +1 -1
  108. package/dist/mcp-server/tools/definitions/brapi-server-info.tool.js +1 -0
  109. package/dist/mcp-server/tools/definitions/brapi-server-info.tool.js.map +1 -1
  110. package/dist/mcp-server/tools/definitions/brapi-submit-observations.tool.d.ts +1 -0
  111. package/dist/mcp-server/tools/definitions/brapi-submit-observations.tool.d.ts.map +1 -1
  112. package/dist/mcp-server/tools/definitions/brapi-submit-observations.tool.js +1 -0
  113. package/dist/mcp-server/tools/definitions/brapi-submit-observations.tool.js.map +1 -1
  114. package/dist/mcp-server/tools/definitions/brapi-walk-pedigree.tool.d.ts +1 -0
  115. package/dist/mcp-server/tools/definitions/brapi-walk-pedigree.tool.d.ts.map +1 -1
  116. package/dist/mcp-server/tools/definitions/brapi-walk-pedigree.tool.js +1 -0
  117. package/dist/mcp-server/tools/definitions/brapi-walk-pedigree.tool.js.map +1 -1
  118. package/dist/mcp-server/tools/definitions/index.d.ts +28 -0
  119. package/dist/mcp-server/tools/definitions/index.d.ts.map +1 -1
  120. package/dist/services/brapi-client/brapi-client.d.ts +7 -0
  121. package/dist/services/brapi-client/brapi-client.d.ts.map +1 -1
  122. package/dist/services/brapi-client/brapi-client.js +21 -12
  123. package/dist/services/brapi-client/brapi-client.js.map +1 -1
  124. package/dist/services/brapi-client/types.d.ts +1 -1
  125. package/dist/services/brapi-dialect/detect.d.ts +1 -1
  126. package/dist/services/brapi-dialect/index.d.ts +2 -2
  127. package/dist/services/brapi-dialect/index.js +1 -1
  128. package/dist/services/capability-registry/capability-registry.d.ts +1 -1
  129. package/dist/services/capability-registry/capability-registry.js +1 -1
  130. package/dist/services/reference-data-cache/reference-data-cache.d.ts +2 -2
  131. package/dist/services/reference-data-cache/reference-data-cache.js +1 -1
  132. package/dist/services/server-registry/types.d.ts +1 -1
  133. package/manifest.json +8 -6
  134. package/package.json +22 -10
  135. package/server.json +9 -3
package/dist/mcp-server/tools/definitions/brapi-build-phenotype-matrix.tool.js CHANGED
@@ -73,12 +73,14 @@ export const brapiBuildPhenotypeMatrix = tool('brapi_build_phenotype_matrix', {
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  code: JsonRpcErrorCode.NotFound,
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  when: 'No connection has been registered under the requested alias',
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  recovery: 'Run brapi_connect with this alias (or omit `alias` to use the default connection) before calling brapi_build_phenotype_matrix.',
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+ thrownBy: 'service',
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  },
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  {
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  reason: 'all_filters_dropped',
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  code: JsonRpcErrorCode.ValidationError,
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  when: 'The active dialect dropped every filter supplied — the call would silently widen to the unfiltered baseline',
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  recovery: 'Drop unsupported filters or use studies / germplasm / variables to scope the query to supported filter paths on the active dialect.',
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+ thrownBy: 'service',
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  },
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  {
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  reason: 'no_observation_path',
package/dist/mcp-server/tools/definitions/brapi-build-phenotype-matrix.tool.js.map CHANGED
@@ -1 +1 @@
1
- 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package/dist/mcp-server/tools/definitions/brapi-dataframe-export.tool.d.ts CHANGED
@@ -60,6 +60,7 @@ export declare const brapiDataframeExport: import("@cyanheads/mcp-ts-core").Tool
60
60
  readonly code: JsonRpcErrorCode.ValidationError;
61
61
  readonly when: 'filename contains path separators or traversal segments';
62
62
  readonly recovery: 'Provide a filename without "/", "\\", or ".." — leave it unset to use the default.';
63
+ readonly thrownBy: 'service';
63
64
  }, {
64
65
  readonly reason: 'mutually_exclusive_projection';
65
66
  readonly code: JsonRpcErrorCode.ValidationError;
package/dist/mcp-server/tools/definitions/brapi-dataframe-export.tool.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"brapi-dataframe-export.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-dataframe-export.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;GAkBG;AAIH,OAAO,EAAsB,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAE/D,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAoEjE,eAAO,MAAM,oBAAoB;;;;;;;;;;;;;;;;;;;;;;;;;;;qBAMnB,kBAAkB;;mBAEpB,kHAAkH;uBAC9G,qDAAqD;;qBAGvD,qBAAqB;;mBAEvB,8EAA8E;uBAC1E,6DAA6D;;qBAG/D,kBAAkB;;mBAEpB,yDAAyD;uBAE7D,oFAAoF;;qBAG9E,+BAA+B;;mBAEjC,wCAAwC;uBAE5C,2FAA2F;cAqFjG,CAAC"}
1
+ {"version":3,"file":"brapi-dataframe-export.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-dataframe-export.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;GAkBG;AAIH,OAAO,EAAsB,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAE/D,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAoEjE,eAAO,MAAM,oBAAoB;;;;;;;;;;;;;;;;;;;;;;;;;;;qBAMnB,kBAAkB;;mBAEpB,kHAAkH;uBAC9G,qDAAqD;;qBAGvD,qBAAqB;;mBAEvB,8EAA8E;uBAC1E,6DAA6D;;qBAG/D,kBAAkB;;mBAEpB,yDAAyD;uBAE7D,oFAAoF;uBAC5E,SAAS;;qBAGX,+BAA+B;;mBAEjC,wCAAwC;uBAE5C,2FAA2F;cAqFjG,CAAC"}
package/dist/mcp-server/tools/definitions/brapi-dataframe-export.tool.js CHANGED
@@ -90,6 +90,7 @@ export const brapiDataframeExport = tool('brapi_dataframe_export', {
90
90
  code: JsonRpcErrorCode.ValidationError,
91
91
  when: 'filename contains path separators or traversal segments',
92
92
  recovery: 'Provide a filename without "/", "\\", or ".." — leave it unset to use the default.',
93
+ thrownBy: 'service',
93
94
  },
94
95
  {
95
96
  reason: 'mutually_exclusive_projection',
package/dist/mcp-server/tools/definitions/brapi-dataframe-export.tool.js.map CHANGED
@@ -1 +1 @@
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package/dist/mcp-server/tools/definitions/brapi-export-genotype-matrix.tool.d.ts CHANGED
@@ -77,6 +77,7 @@ export declare const brapiExportGenotypeMatrix: import("@cyanheads/mcp-ts-core")
77
77
  readonly code: JsonRpcErrorCode.NotFound;
78
78
  readonly when: 'No connection has been registered under the requested alias';
79
79
  readonly recovery: 'Run brapi_connect with this alias (or omit `alias` to use the default connection) before calling brapi_export_genotype_matrix.';
80
+ readonly thrownBy: 'service';
80
81
  }, {
81
82
  readonly reason: 'no_filters';
82
83
  readonly code: JsonRpcErrorCode.ValidationError;
package/dist/mcp-server/tools/definitions/brapi-export-genotype-matrix.tool.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"brapi-export-genotype-matrix.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-export-genotype-matrix.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;GA4BG;AAGH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAiHjE,eAAO,MAAM,yBAAyB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;qBAMxB,eAAe;;mBAEjB,6DAA6D;uBAEjE,gIAAgI;;qBAG1H,YAAY;;mBAEd,gCAAgC;uBAEpC,4FAA4F;;qBAGtF,0BAA0B;;mBAE5B,6EAA6E;uBAEjF,+HAA+H;cAiQrI,CAAC"}
1
+ {"version":3,"file":"brapi-export-genotype-matrix.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-export-genotype-matrix.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;GA4BG;AAGH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAiHjE,eAAO,MAAM,yBAAyB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;qBAMxB,eAAe;;mBAEjB,6DAA6D;uBAEjE,gIAAgI;uBACxH,SAAS;;qBAGX,YAAY;;mBAEd,gCAAgC;uBAEpC,4FAA4F;;qBAGtF,0BAA0B;;mBAE5B,6EAA6E;uBAEjF,+HAA+H;cAiQrI,CAAC"}
package/dist/mcp-server/tools/definitions/brapi-export-genotype-matrix.tool.js CHANGED
@@ -101,6 +101,7 @@ export const brapiExportGenotypeMatrix = tool('brapi_export_genotype_matrix', {
101
101
  code: JsonRpcErrorCode.NotFound,
102
102
  when: 'No connection has been registered under the requested alias',
103
103
  recovery: 'Run brapi_connect with this alias (or omit `alias` to use the default connection) before calling brapi_export_genotype_matrix.',
104
+ thrownBy: 'service',
104
105
  },
105
106
  {
106
107
  reason: 'no_filters',
package/dist/mcp-server/tools/definitions/brapi-export-genotype-matrix.tool.js.map CHANGED
@@ -1 +1 @@
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package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.d.ts CHANGED
@@ -70,6 +70,7 @@ export declare const brapiFindGenotypeCalls: import("@cyanheads/mcp-ts-core").To
70
70
  readonly code: JsonRpcErrorCode.NotFound;
71
71
  readonly when: 'No connection has been registered under the requested alias';
72
72
  readonly recovery: 'Run brapi_connect with this alias (or omit `alias` to use the default connection) before calling brapi_find_genotype_calls.';
73
+ readonly thrownBy: 'service';
73
74
  }, {
74
75
  readonly reason: 'no_filters';
75
76
  readonly code: JsonRpcErrorCode.ValidationError;
package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"brapi-find-genotype-calls.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;GAYG;AAEH,OAAO,EAAsB,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAC/D,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAgHjE,eAAO,MAAM,sBAAsB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;qBAMrB,eAAe;;mBAEjB,6DAA6D;uBAEjE,6HAA6H;;qBAGvH,YAAY;;mBAEd,qEAAqE;uBAEzE,gGAAgG;;qBAG1F,0BAA0B;;mBAE5B,6EAA6E;uBAEjF,+HAA+H;;;;;;;EAiPrI,CAAC"}
1
+ {"version":3,"file":"brapi-find-genotype-calls.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;GAYG;AAEH,OAAO,EAAsB,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAC/D,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAgHjE,eAAO,MAAM,sBAAsB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;qBAMrB,eAAe;;mBAEjB,6DAA6D;uBAEjE,6HAA6H;uBACrH,SAAS;;qBAGX,YAAY;;mBAEd,qEAAqE;uBAEzE,gGAAgG;;qBAG1F,0BAA0B;;mBAE5B,6EAA6E;uBAEjF,+HAA+H;;;;;;;EAiPrI,CAAC"}
package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.js CHANGED
@@ -104,6 +104,7 @@ export const brapiFindGenotypeCalls = tool('brapi_find_genotype_calls', {
104
104
  code: JsonRpcErrorCode.NotFound,
105
105
  when: 'No connection has been registered under the requested alias',
106
106
  recovery: 'Run brapi_connect with this alias (or omit `alias` to use the default connection) before calling brapi_find_genotype_calls.',
107
+ thrownBy: 'service',
107
108
  },
108
109
  {
109
110
  reason: 'no_filters',
package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.js.map CHANGED
@@ -1 +1 @@
1
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package/dist/mcp-server/tools/definitions/brapi-find-germplasm.tool.d.ts CHANGED
@@ -70,11 +70,13 @@ export declare const brapiFindGermplasm: import("@cyanheads/mcp-ts-core").ToolDe
70
70
  readonly code: JsonRpcErrorCode.NotFound;
71
71
  readonly when: 'No connection has been registered under the requested alias';
72
72
  readonly recovery: 'Run brapi_connect with this alias (or omit `alias` to use the default connection) before calling brapi_find_germplasm.';
73
+ readonly thrownBy: 'service';
73
74
  }, {
74
75
  readonly reason: 'all_filters_dropped';
75
76
  readonly code: JsonRpcErrorCode.ValidationError;
76
77
  readonly when: 'The active dialect dropped every filter the agent supplied — the upstream server does not honor any of the requested scope filters on this endpoint, so the call would silently widen to the unfiltered baseline.';
77
78
  readonly recovery: 'Drop the unsupported filters and rescope by names, germplasmDbIds, germplasmPUIs, accessionNumbers, crops, synonyms, genus, or species — these filter paths are honored on the active dialect.';
79
+ readonly thrownBy: 'service';
78
80
  }], {
79
81
  readonly totalCount: z.ZodNumber;
80
82
  readonly returnedCount: z.ZodNumber;
package/dist/mcp-server/tools/definitions/brapi-find-germplasm.tool.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"brapi-find-germplasm.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-find-germplasm.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAmIjE,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;qBAMjB,eAAe;;mBAEjB,6DAA6D;uBAEjE,wHAAwH;;qBAGlH,qBAAqB;;mBAEvB,mNAAmN;uBAEvN,gMAAgM;;;;;;;;EA2VtM,CAAC"}
1
+ {"version":3,"file":"brapi-find-germplasm.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-find-germplasm.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAmIjE,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;qBAMjB,eAAe;;mBAEjB,6DAA6D;uBAEjE,wHAAwH;uBAChH,SAAS;;qBAGX,qBAAqB;;mBAEvB,mNAAmN;uBAEvN,gMAAgM;uBACxL,SAAS;;;;;;;;EA2VvB,CAAC"}
package/dist/mcp-server/tools/definitions/brapi-find-germplasm.tool.js CHANGED
@@ -112,12 +112,14 @@ export const brapiFindGermplasm = tool('brapi_find_germplasm', {
112
112
  code: JsonRpcErrorCode.NotFound,
113
113
  when: 'No connection has been registered under the requested alias',
114
114
  recovery: 'Run brapi_connect with this alias (or omit `alias` to use the default connection) before calling brapi_find_germplasm.',
115
+ thrownBy: 'service',
115
116
  },
116
117
  {
117
118
  reason: 'all_filters_dropped',
118
119
  code: JsonRpcErrorCode.ValidationError,
119
120
  when: 'The active dialect dropped every filter the agent supplied — the upstream server does not honor any of the requested scope filters on this endpoint, so the call would silently widen to the unfiltered baseline.',
120
121
  recovery: 'Drop the unsupported filters and rescope by names, germplasmDbIds, germplasmPUIs, accessionNumbers, crops, synonyms, genus, or species — these filter paths are honored on the active dialect.',
122
+ thrownBy: 'service',
121
123
  },
122
124
  ],
123
125
  input: z.object({
package/dist/mcp-server/tools/definitions/brapi-find-germplasm.tool.js.map CHANGED
@@ -1 +1 @@
1
- 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package/dist/mcp-server/tools/definitions/brapi-find-images.tool.d.ts CHANGED
@@ -63,11 +63,13 @@ export declare const brapiFindImages: import("@cyanheads/mcp-ts-core").ToolDefin
63
63
  readonly code: JsonRpcErrorCode.NotFound;
64
64
  readonly when: 'No connection has been registered under the requested alias';
65
65
  readonly recovery: 'Run brapi_connect with this alias (or omit `alias` to use the default connection) before calling brapi_find_images.';
66
+ readonly thrownBy: 'service';
66
67
  }, {
67
68
  readonly reason: 'all_filters_dropped';
68
69
  readonly code: JsonRpcErrorCode.ValidationError;
69
70
  readonly when: 'The active dialect dropped every filter the agent supplied — the upstream server does not honor any of the requested scope filters on this endpoint, so the call would silently widen to the unfiltered baseline.';
70
71
  readonly recovery: 'Drop the unsupported filters and rescope by images, observationUnits, observations, studies, descriptiveOntologyTerms, imageFileNames, or mimeTypes — these filter paths are honored on the active dialect.';
72
+ readonly thrownBy: 'service';
71
73
  }], {
72
74
  readonly totalCount: z.ZodNumber;
73
75
  readonly returnedCount: z.ZodNumber;
package/dist/mcp-server/tools/definitions/brapi-find-images.tool.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"brapi-find-images.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-find-images.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AA4HjE,eAAO,MAAM,eAAe;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;qBAMd,eAAe;;mBAEjB,6DAA6D;uBAEjE,qHAAqH;;qBAG/G,qBAAqB;;mBAEvB,mNAAmN;uBAEvN,6MAA6M;;;;;;;;EAmRnN,CAAC"}
1
+ {"version":3,"file":"brapi-find-images.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-find-images.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AA4HjE,eAAO,MAAM,eAAe;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;qBAMd,eAAe;;mBAEjB,6DAA6D;uBAEjE,qHAAqH;uBAC7G,SAAS;;qBAGX,qBAAqB;;mBAEvB,mNAAmN;uBAEvN,6MAA6M;uBACrM,SAAS;;;;;;;;EAmRvB,CAAC"}
package/dist/mcp-server/tools/definitions/brapi-find-images.tool.js CHANGED
@@ -108,12 +108,14 @@ export const brapiFindImages = tool('brapi_find_images', {
108
108
  code: JsonRpcErrorCode.NotFound,
109
109
  when: 'No connection has been registered under the requested alias',
110
110
  recovery: 'Run brapi_connect with this alias (or omit `alias` to use the default connection) before calling brapi_find_images.',
111
+ thrownBy: 'service',
111
112
  },
112
113
  {
113
114
  reason: 'all_filters_dropped',
114
115
  code: JsonRpcErrorCode.ValidationError,
115
116
  when: 'The active dialect dropped every filter the agent supplied — the upstream server does not honor any of the requested scope filters on this endpoint, so the call would silently widen to the unfiltered baseline.',
116
117
  recovery: 'Drop the unsupported filters and rescope by images, observationUnits, observations, studies, descriptiveOntologyTerms, imageFileNames, or mimeTypes — these filter paths are honored on the active dialect.',
118
+ thrownBy: 'service',
117
119
  },
118
120
  ],
119
121
  input: z.object({
package/dist/mcp-server/tools/definitions/brapi-find-images.tool.js.map CHANGED
@@ -1 +1 @@
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package/dist/mcp-server/tools/definitions/brapi-find-locations.tool.d.ts CHANGED
@@ -67,11 +67,13 @@ export declare const brapiFindLocations: import("@cyanheads/mcp-ts-core").ToolDe
67
67
  readonly code: JsonRpcErrorCode.NotFound;
68
68
  readonly when: 'No connection has been registered under the requested alias';
69
69
  readonly recovery: 'Run brapi_connect with this alias (or omit `alias` to use the default connection) before calling brapi_find_locations.';
70
+ readonly thrownBy: 'service';
70
71
  }, {
71
72
  readonly reason: 'all_filters_dropped';
72
73
  readonly code: JsonRpcErrorCode.ValidationError;
73
74
  readonly when: 'The active dialect dropped every filter the agent supplied — the upstream server does not honor any of the requested scope filters on this endpoint, so the call would silently widen to the unfiltered baseline.';
74
75
  readonly recovery: 'Drop the unsupported filters and rescope by locations, locationNames, countryCodes, locationTypes, abbreviations, or bbox — these filter paths are honored on the active dialect.';
76
+ readonly thrownBy: 'service';
75
77
  }], {
76
78
  readonly totalCount: z.ZodNumber;
77
79
  readonly returnedCount: z.ZodNumber;
package/dist/mcp-server/tools/definitions/brapi-find-locations.tool.d.ts.map CHANGED
@@ -1 +1 @@
1
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1
+ {"version":3,"file":"brapi-find-locations.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-find-locations.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAkHjE,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;qBAMjB,eAAe;;mBAEjB,6DAA6D;uBAEjE,wHAAwH;uBAChH,SAAS;;qBAGX,qBAAqB;;mBAEvB,mNAAmN;uBAEvN,mLAAmL;uBAC3K,SAAS;;;;;;;;EAkXvB,CAAC"}