@cyanheads/brapi-mcp-server 0.7.10 → 0.7.12
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/CLAUDE.md +32 -25
- package/Dockerfile +19 -5
- package/README.md +7 -4
- package/changelog/0.7.x/0.7.11.md +43 -0
- package/changelog/0.7.x/0.7.12.md +35 -0
- package/changelog/template.md +62 -40
- package/dist/config/alias-credentials.d.ts +1 -1
- package/dist/config/alias-credentials.d.ts.map +1 -1
- package/dist/config/alias-credentials.js +24 -8
- package/dist/config/alias-credentials.js.map +1 -1
- package/dist/config/builtin-aliases.js.map +1 -1
- package/dist/config/server-config.d.ts +1 -1
- package/dist/config/server-config.d.ts.map +1 -1
- package/dist/config/server-config.js +3 -1
- package/dist/config/server-config.js.map +1 -1
- package/dist/mcp-server/resources/definitions/brapi-calls.resource.d.ts +3 -3
- package/dist/mcp-server/resources/definitions/brapi-calls.resource.d.ts.map +1 -1
- package/dist/mcp-server/resources/definitions/brapi-calls.resource.js +1 -1
- package/dist/mcp-server/resources/definitions/brapi-filters.resource.d.ts +3 -3
- package/dist/mcp-server/resources/definitions/brapi-filters.resource.d.ts.map +1 -1
- package/dist/mcp-server/resources/definitions/brapi-filters.resource.js +1 -1
- package/dist/mcp-server/resources/definitions/brapi-germplasm.resource.d.ts +6 -6
- package/dist/mcp-server/resources/definitions/brapi-germplasm.resource.d.ts.map +1 -1
- package/dist/mcp-server/resources/definitions/brapi-germplasm.resource.js +1 -1
- package/dist/mcp-server/resources/definitions/brapi-server-info.resource.d.ts +3 -3
- package/dist/mcp-server/resources/definitions/brapi-server-info.resource.d.ts.map +1 -1
- package/dist/mcp-server/resources/definitions/brapi-server-info.resource.js +1 -1
- package/dist/mcp-server/resources/definitions/brapi-study.resource.d.ts +6 -6
- package/dist/mcp-server/resources/definitions/brapi-study.resource.d.ts.map +1 -1
- package/dist/mcp-server/resources/definitions/brapi-study.resource.js +1 -1
- package/dist/mcp-server/resources/definitions/brapi-variable.resource.d.ts +6 -6
- package/dist/mcp-server/resources/definitions/brapi-variable.resource.d.ts.map +1 -1
- package/dist/mcp-server/resources/definitions/brapi-variable.resource.js +1 -1
- package/dist/mcp-server/tools/definitions/brapi-build-phenotype-matrix.tool.d.ts +19 -14
- package/dist/mcp-server/tools/definitions/brapi-build-phenotype-matrix.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-build-phenotype-matrix.tool.js +34 -0
- package/dist/mcp-server/tools/definitions/brapi-build-phenotype-matrix.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-connect.tool.d.ts +12 -12
- package/dist/mcp-server/tools/definitions/brapi-connect.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-dataframe-describe.tool.d.ts +2 -2
- package/dist/mcp-server/tools/definitions/brapi-dataframe-describe.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-dataframe-export.tool.d.ts +14 -14
- package/dist/mcp-server/tools/definitions/brapi-dataframe-export.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-dataframe-query.tool.d.ts +9 -4
- package/dist/mcp-server/tools/definitions/brapi-dataframe-query.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-dataframe-query.tool.js +31 -0
- package/dist/mcp-server/tools/definitions/brapi-dataframe-query.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-describe-filters.tool.d.ts +6 -6
- package/dist/mcp-server/tools/definitions/brapi-describe-filters.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-export-genotype-matrix.tool.d.ts +11 -11
- package/dist/mcp-server/tools/definitions/brapi-export-genotype-matrix.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.d.ts +11 -11
- package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-find-germplasm.tool.d.ts +6 -6
- package/dist/mcp-server/tools/definitions/brapi-find-germplasm.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-find-images.tool.d.ts +6 -6
- package/dist/mcp-server/tools/definitions/brapi-find-images.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-find-locations.tool.d.ts +6 -6
- package/dist/mcp-server/tools/definitions/brapi-find-locations.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-find-observations.tool.d.ts +6 -6
- package/dist/mcp-server/tools/definitions/brapi-find-observations.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-find-studies.tool.d.ts +6 -6
- package/dist/mcp-server/tools/definitions/brapi-find-studies.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-find-variables.tool.d.ts +7 -7
- package/dist/mcp-server/tools/definitions/brapi-find-variables.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-find-variants.tool.d.ts +6 -6
- package/dist/mcp-server/tools/definitions/brapi-find-variants.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-germplasm-performance.tool.d.ts +6 -6
- package/dist/mcp-server/tools/definitions/brapi-germplasm-performance.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-get-germplasm.tool.d.ts +6 -6
- package/dist/mcp-server/tools/definitions/brapi-get-germplasm.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-get-image.tool.d.ts +6 -6
- package/dist/mcp-server/tools/definitions/brapi-get-image.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-get-study.tool.d.ts +6 -6
- package/dist/mcp-server/tools/definitions/brapi-get-study.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-raw-get.tool.d.ts +6 -6
- package/dist/mcp-server/tools/definitions/brapi-raw-get.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-raw-search.tool.d.ts +7 -7
- package/dist/mcp-server/tools/definitions/brapi-raw-search.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-server-info.tool.d.ts +9 -9
- package/dist/mcp-server/tools/definitions/brapi-server-info.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-submit-observations.tool.d.ts +23 -27
- package/dist/mcp-server/tools/definitions/brapi-submit-observations.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-submit-observations.tool.js +41 -55
- package/dist/mcp-server/tools/definitions/brapi-submit-observations.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-walk-pedigree.tool.d.ts +8 -8
- package/dist/mcp-server/tools/definitions/brapi-walk-pedigree.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/index.d.ts +829 -824
- package/dist/mcp-server/tools/definitions/index.d.ts.map +1 -1
- package/dist/mcp-server/tools/shared/find-helpers.js.map +1 -1
- package/dist/mcp-server/tools/shared/observations.js.map +1 -1
- package/dist/mcp-server/tools/shared/orientation-envelope.d.ts +12 -12
- package/dist/services/brapi-client/brapi-client.d.ts +2 -3
- package/dist/services/brapi-client/brapi-client.d.ts.map +1 -1
- package/dist/services/brapi-client/brapi-client.js +16 -19
- package/dist/services/brapi-client/brapi-client.js.map +1 -1
- package/dist/services/brapi-client/types.d.ts +2 -2
- package/dist/services/brapi-dialect/detect.d.ts +1 -1
- package/dist/services/brapi-dialect/detect.js.map +1 -1
- package/dist/services/brapi-dialect/index.d.ts +2 -2
- package/dist/services/brapi-dialect/index.js +1 -1
- package/dist/services/brapi-dialect/index.js.map +1 -1
- package/dist/services/canvas-bridge/canvas-bridge.d.ts +1 -1
- package/dist/services/canvas-bridge/canvas-bridge.d.ts.map +1 -1
- package/dist/services/canvas-bridge/canvas-bridge.js.map +1 -1
- package/dist/services/capability-registry/capability-registry.d.ts +1 -1
- package/dist/services/capability-registry/capability-registry.d.ts.map +1 -1
- package/dist/services/capability-registry/capability-registry.js +1 -1
- package/dist/services/capability-registry/capability-registry.js.map +1 -1
- package/dist/services/ontology-resolver/ontology-resolver.d.ts.map +1 -1
- package/dist/services/ontology-resolver/ontology-resolver.js.map +1 -1
- package/dist/services/reference-data-cache/reference-data-cache.d.ts +2 -2
- package/dist/services/reference-data-cache/reference-data-cache.d.ts.map +1 -1
- package/dist/services/reference-data-cache/reference-data-cache.js +1 -1
- package/dist/services/reference-data-cache/reference-data-cache.js.map +1 -1
- package/dist/services/server-registry/server-registry.d.ts.map +1 -1
- package/dist/services/server-registry/server-registry.js.map +1 -1
- package/dist/services/server-registry/types.d.ts +1 -1
- package/manifest.json +8 -6
- package/package.json +15 -14
- package/server.json +3 -3
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@@ -13,8 +13,8 @@ import { JsonRpcErrorCode } from '@cyanheads/mcp-ts-core/errors';
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export declare const brapiWalkPedigree: import("@cyanheads/mcp-ts-core").ToolDefinition<z.ZodObject<{
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germplasmDbIds: z.ZodArray<z.ZodString>;
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direction: z.ZodDefault<z.ZodEnum<{
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both: "both";
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ancestors: "ancestors";
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both: "both";
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descendants: "descendants";
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}>>;
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maxDepth: z.ZodDefault<z.ZodNumber>;
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@@ -23,8 +23,8 @@ export declare const brapiWalkPedigree: import("@cyanheads/mcp-ts-core").ToolDef
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}, z.core.$strip>, z.ZodObject<{
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alias: z.ZodString;
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direction: z.ZodEnum<{
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both: "both";
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ancestors: "ancestors";
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both: "both";
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descendants: "descendants";
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}>;
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maxDepth: z.ZodNumber;
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@@ -34,18 +34,18 @@ export declare const brapiWalkPedigree: import("@cyanheads/mcp-ts-core").ToolDef
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depth: z.ZodNumber;
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isRoot: z.ZodBoolean;
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direction: z.ZodEnum<{
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root: "root";
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ancestor: "ancestor";
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descendant: "descendant";
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both: "both";
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descendant: "descendant";
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root: "root";
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}>;
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}, z.core.$strip>>;
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edges: z.ZodArray<z.ZodObject<{
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from: z.ZodString;
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to: z.ZodString;
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relationship: z.ZodEnum<{
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parent: "parent";
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child: "child";
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parent: "parent";
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}>;
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parentType: z.ZodOptional<z.ZodString>;
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}, z.core.$strip>>;
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@@ -79,9 +79,9 @@ export declare const brapiWalkPedigree: import("@cyanheads/mcp-ts-core").ToolDef
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totalCount: z.ZodOptional<z.ZodNumber>;
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}, z.core.$strip>>;
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}, z.core.$strip>, readonly [{
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readonly reason:
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readonly reason: 'unknown_alias';
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readonly code: JsonRpcErrorCode.NotFound;
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readonly when:
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readonly recovery:
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readonly when: 'No connection has been registered under the requested alias';
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readonly recovery: 'Run brapi_connect with this alias (or omit `alias` to use the default connection) before calling brapi_walk_pedigree.';
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}], undefined>;
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//# sourceMappingURL=brapi-walk-pedigree.tool.d.ts.map
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@@ -1 +1 @@
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{"version":3,"file":"brapi-walk-pedigree.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-walk-pedigree.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAEH,OAAO,EAAsB,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAC/D,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAgHjE,eAAO,MAAM,iBAAiB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;qBAMhB,eAAe;;mBAEjB,6DAA6D;uBAEjE,uHAAuH;cA0S7H,CAAC"}
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