npm - @cyanheads/brapi-mcp-server - Versions diffs - 0.7.1 → 0.7.3 - Mend

@cyanheads/brapi-mcp-server 0.7.1 → 0.7.3

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (57) hide show

package/CLAUDE.md CHANGED Viewed

@@ -1,7 +1,7 @@
 # Agent Protocol
 **Server:** brapi-mcp-server
-**Version:** 0.7.1
+**Version:** 0.7.3
 **Framework:** [@cyanheads/mcp-ts-core](https://www.npmjs.com/package/@cyanheads/mcp-ts-core)
 > **Read the framework docs first:** `node_modules/@cyanheads/mcp-ts-core/CLAUDE.md` contains the full API reference — builders, Context, error codes, exports, patterns. This file covers server-specific conventions only.
@@ -322,6 +322,7 @@ Available skills:
 | `git-wrapup` | Land working-tree changes as a versioned commit + annotated tag — version bump, changelog, verify, tag. Local only. |
 | `release-and-publish` | Push + npm + MCP Registry + GH Release + Docker. Picks up from `git-wrapup` |
 | `maintenance` | Investigate changelogs, adopt upstream changes, sync skills to agent dirs |
+| `orchestrations` | Chain task skills into a gated multi-phase pipeline — build-out, QA-fix, update-ship — when you can spawn sub-agents |
 | `report-issue-framework` | File a bug or feature request against `@cyanheads/mcp-ts-core` via `gh` CLI |
 | `report-issue-local` | File a bug or feature request against this server's own repo via `gh` CLI |
 | `api-auth` | Auth modes, scopes, JWT/OAuth |
@@ -330,12 +331,15 @@ Available skills:
 | `api-config` | AppConfig, parseConfig, env vars |
 | `api-context` | Context interface, logger, state, progress |
 | `api-errors` | McpError, JsonRpcErrorCode, error patterns |
+| `api-mirror` | MirrorService: persistent SQLite-backed local mirror of a bulk upstream dataset with FTS5 — Tier 3 opt-in |
 | `api-services` | LLM, Speech, Graph services |
 | `api-telemetry` | OTel catalog: spans, metrics, completion logs, env config, cardinality rules |
 | `api-testing` | createMockContext, test patterns |
 | `api-utils` | Formatting, parsing, security, pagination, scheduling, telemetry helpers |
 | `api-workers` | Cloudflare Workers runtime |
+**Chaining skills into pipelines.** When the user wants a multi-phase effort — build this server out, QA-and-fix the surface, update-and-ship — *and you can spawn sub-agents*, `skills/orchestrations/SKILL.md` sequences the task skills above into a gated pipeline with verification at each step. Read it to drive the run. Optional: skip it if you can't orchestrate sub-agents, and ignore it entirely if you were *spawned* as one — you've already been scoped to a single phase.
 When you complete a skill's checklist, check the boxes and add a completion timestamp at the end (e.g., `Completed: 2026-03-11`).
 ---

package/README.md CHANGED Viewed

@@ -7,7 +7,7 @@
 <div align="center">
-[![npm](https://img.shields.io/npm/v/@cyanheads/brapi-mcp-server?style=flat-square&logo=npm&logoColor=white)](https://www.npmjs.com/package/@cyanheads/brapi-mcp-server) [![Version](https://img.shields.io/badge/Version-0.7.1-blue.svg?style=flat-square)](./CHANGELOG.md) [![MCP SDK](https://img.shields.io/badge/MCP%20SDK-^1.29.0-green.svg?style=flat-square)](https://modelcontextprotocol.io/) [![License](https://img.shields.io/badge/License-Apache%202.0-orange.svg?style=flat-square)](./LICENSE) [![TypeScript](https://img.shields.io/badge/TypeScript-^6.0.3-3178C6.svg?style=flat-square)](https://www.typescriptlang.org/) [![Bun](https://img.shields.io/badge/Bun-v1.3.11-blueviolet.svg?style=flat-square)](https://bun.sh/) [![Status](https://img.shields.io/badge/Status-Beta-yellow.svg?style=flat-square)](./CHANGELOG.md)
+[![npm](https://img.shields.io/npm/v/@cyanheads/brapi-mcp-server?style=flat-square&logo=npm&logoColor=white)](https://www.npmjs.com/package/@cyanheads/brapi-mcp-server) [![Version](https://img.shields.io/badge/Version-0.7.3-blue.svg?style=flat-square)](./CHANGELOG.md) [![MCP SDK](https://img.shields.io/badge/MCP%20SDK-^1.29.0-green.svg?style=flat-square)](https://modelcontextprotocol.io/) [![License](https://img.shields.io/badge/License-Apache%202.0-orange.svg?style=flat-square)](./LICENSE) [![TypeScript](https://img.shields.io/badge/TypeScript-^6.0.3-3178C6.svg?style=flat-square)](https://www.typescriptlang.org/) [![Bun](https://img.shields.io/badge/Bun-v1.3.11-blueviolet.svg?style=flat-square)](https://bun.sh/) [![Status](https://img.shields.io/badge/Status-Beta-yellow.svg?style=flat-square)](./CHANGELOG.md)
 </div>
@@ -207,7 +207,8 @@ Every variable is optional.
 | `BRAPI_DEFAULT_OAUTH_CLIENT_ID` / `_OAUTH_CLIENT_SECRET` | OAuth2 client-credentials for the default connection. | — |
 | `BRAPI_DEFAULT_API_KEY` / `_API_KEY_HEADER` | Static API key for the default connection. | header `Authorization` |
 | `BRAPI_BUILTIN_ALIASES_DISABLED` | Comma-separated alias names (case-insensitive) to remove from the built-in registry. | — |
-| `BRAPI_LOAD_LIMIT` | In-context row cap before `find_*` spills to a canvas dataframe; also doubles as the upstream pageSize during spillover walks (`loadLimit × 50` is the dataframe ceiling). | `1000` |
+| `BRAPI_LOAD_LIMIT` | In-context row cap returned by `find_*` tools before spilling to a canvas dataframe. | `1000` |
+| `BRAPI_PAGE_SIZE` | Upstream `pageSize` used during canvas spillover walks (decoupled from `BRAPI_LOAD_LIMIT`). Dataframe ceiling = `pageSize × 50`. | `1000` |
 | `BRAPI_MAX_CONCURRENT_REQUESTS` | Per-connection concurrency cap. | `4` |
 | `BRAPI_RETRY_MAX_ATTEMPTS` / `BRAPI_RETRY_BASE_DELAY_MS` | Retry policy for 429/5xx with exponential backoff. | `3` / `500` |
 | `BRAPI_REQUEST_TIMEOUT_MS` | Per-request HTTP timeout. | `30000` |

package/changelog/0.7.x/0.7.2.md ADDED Viewed

@@ -0,0 +1,14 @@
+---
+summary: "Adopt @cyanheads/mcp-ts-core 0.9.21 — HTTP log context fix, secret-safe error messages, fail-fast retries"
+breaking: false
+security: false
+---
+# 0.7.2 — 2026-06-02
+## Changed
+- **`@cyanheads/mcp-ts-core`** `^0.9.16` → `^0.9.21` — framework adoption covering three fixes: per-request logs and traces now carry fresh request and trace/span IDs instead of the frozen boot context (HTTP transport); `fetchWithTimeout` strips query-string secrets (e.g. `?api_key=`) from error messages and logs; `withRetry` fails fast on non-retryable errors and `ctx.fail` auto-populates the `retryable` flag.
+- **`skills/`** — 8 updated (`add-tool`, `add-service`, `api-canvas`, `api-context`, `api-linter`, `api-utils`, `design-mcp-server`, `release-and-publish`) + 2 new (`api-mirror`, `orchestrations`); synced to `.claude/skills/` and `.agents/skills/`.
+- **`CLAUDE.md` / `AGENTS.md`** — skill table updated with `orchestrations` and `api-mirror` entries.
+- **`scripts/`** — added `devcheck.ts`, `check-skill-versions.ts`, and `release-github.ts`; `release:github` script added to `package.json`.

package/changelog/0.7.x/0.7.3.md ADDED Viewed

@@ -0,0 +1,22 @@
+---
+summary: "Decouple spillover pageSize from loadLimit via BRAPI_PAGE_SIZE — fixes spillover timeout when agents request a small inline preview"
+breaking: false
+security: false
+---
+# 0.7.3 — 2026-06-08
+## Added
+- **`BRAPI_PAGE_SIZE`** — new env var (default `1000`) controls the upstream `pageSize` used during canvas spillover walks, decoupled from `BRAPI_LOAD_LIMIT`. Previously `loadLimit` doubled as the upstream pageSize, so `loadLimit=5` triggered a 245-page walk against sweetpotatobase (1221 rows ÷ 5) instead of 2 pages. Now the walk always uses `pageSize` regardless of the agent's inline-preview cap ([#26](https://github.com/cyanheads/brapi-mcp-server/issues/26)).
+- **Distributions truncation caveat** — when a `find_*` result dataframe is truncated (upstream total > dataframe rowCount), `renderDistributions` prefixes the block with `_Computed over N of M upstream rows — narrow filters or raise loadLimit for a representative sample._` ([#26](https://github.com/cyanheads/brapi-mcp-server/issues/26)).
+- **Page-offset alignment** — `spillToCanvas` re-fetches from page 0 when `loadLimit !== pageSize` to keep page offsets consistent with the spillover walk.
+## Changed
+- **`LoadLimitInput.describe()`** — rewritten to drop the dual-role footgun warning; now reads "Cap on rows returned inline. Rows beyond the cap land in a dataframe; query with `brapi_dataframe_query` (SQL)."
+- **`@types/node`** — added to `devcheck.config.json` outdated allowlist (patch behind, held per framework hold convention).
+## Fixed
+- **Spillover timeout on small `loadLimit`** — resolved as a side effect of the `BRAPI_PAGE_SIZE` decoupling: agents requesting a narrow inline preview no longer silently shrink the upstream pageSize and trigger excessive page counts ([#21](https://github.com/cyanheads/brapi-mcp-server/issues/21)). Live re-test on sweetpotatobase study 1131: ~14s elapsed (2 pages at `pageSize=1000`) versus the prior ~200+ pages at `loadLimit=5`.

package/dist/config/server-config.d.ts CHANGED Viewed

@@ -18,6 +18,7 @@ export declare const ServerConfigSchema: z.ZodObject<{
     defaultApiKeyHeader: z.ZodDefault<z.ZodString>;
     datasetTtlSeconds: z.ZodDefault<z.ZodCoercedNumber<unknown>>;
     loadLimit: z.ZodDefault<z.ZodCoercedNumber<unknown>>;
+    pageSize: z.ZodDefault<z.ZodCoercedNumber<unknown>>;
     maxConcurrentRequests: z.ZodDefault<z.ZodCoercedNumber<unknown>>;
     retryMaxAttempts: z.ZodDefault<z.ZodCoercedNumber<unknown>>;
     retryBaseDelayMs: z.ZodDefault<z.ZodCoercedNumber<unknown>>;

package/dist/config/server-config.d.ts.map CHANGED Viewed

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package/dist/config/server-config.js CHANGED Viewed

@@ -42,7 +42,13 @@ export const ServerConfigSchema = z.object({
         .int()
         .positive()
         .default(1_000)
-        .describe('Default row cap returned in-context before spilling to a canvas dataframe. Also doubles as the upstream `pageSize` used during spillover walks — the dataframe ceiling is `loadLimit × MAX_SPILLOVER_PAGES (50)`, so the 1,000 default lines up with the documented 50,000-row spillover cap. Operators on small/test BrAPI servers can lower it; raising it above 1,000 is rarely useful because most BrAPI servers cap server-side pageSize at 1,000.'),
+        .describe('Default in-context row cap returned by find_* tools before spilling to a canvas dataframe. Rows beyond this cap land in the dataframe; query with brapi_dataframe_query (SQL).'),
+    pageSize: z.coerce
+        .number()
+        .int()
+        .positive()
+        .default(1_000)
+        .describe('Upstream pageSize used during canvas spillover walks. Decoupled from loadLimit so lowering the inline preview cap no longer shrinks the dataframe ceiling. Most BrAPI servers cap pageSize at 1,000; the dataframe ceiling is pageSize × MAX_SPILLOVER_PAGES (50).'),
     maxConcurrentRequests: z.coerce
         .number()
         .int()
@@ -147,6 +153,7 @@ export function getServerConfig() {
         defaultApiKeyHeader: 'BRAPI_DEFAULT_API_KEY_HEADER',
         datasetTtlSeconds: 'BRAPI_DATASET_TTL_SECONDS',
         loadLimit: 'BRAPI_LOAD_LIMIT',
+        pageSize: 'BRAPI_PAGE_SIZE',
         maxConcurrentRequests: 'BRAPI_MAX_CONCURRENT_REQUESTS',
         retryMaxAttempts: 'BRAPI_RETRY_MAX_ATTEMPTS',
         retryBaseDelayMs: 'BRAPI_RETRY_BASE_DELAY_MS',

package/dist/config/server-config.js.map CHANGED Viewed

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package/dist/mcp-server/tools/definitions/brapi-build-phenotype-matrix.tool.d.ts CHANGED Viewed

@@ -61,6 +61,7 @@ export declare const brapiBuildPhenotypeMatrix: import("@cyanheads/mcp-ts-core")
         expiresAt: z.ZodString;
         truncated: z.ZodOptional<z.ZodBoolean>;
         maxRows: z.ZodOptional<z.ZodNumber>;
+        totalCount: z.ZodOptional<z.ZodNumber>;
     }, z.core.$strip>>;
     warnings: z.ZodArray<z.ZodString>;
 }, z.core.$strip>, readonly [{

package/dist/mcp-server/tools/definitions/brapi-build-phenotype-matrix.tool.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"brapi-build-phenotype-matrix.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-build-phenotype-matrix.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;GAiBG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAoEjE,eAAO,MAAM,yBAAyB~~;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;~~cAgPpC,CAAC"}
1	+ {"version":3,"file":"brapi-build-phenotype-matrix.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-build-phenotype-matrix.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;GAiBG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAoEjE,eAAO,MAAM,yBAAyB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;cAgPpC,CAAC"}

package/dist/mcp-server/tools/definitions/brapi-export-genotype-matrix.tool.d.ts CHANGED Viewed

@@ -64,6 +64,7 @@ export declare const brapiExportGenotypeMatrix: import("@cyanheads/mcp-ts-core")
         expiresAt: z.ZodString;
         truncated: z.ZodOptional<z.ZodBoolean>;
         maxRows: z.ZodOptional<z.ZodNumber>;
+        totalCount: z.ZodOptional<z.ZodNumber>;
     }, z.core.$strip>;
     vcf: z.ZodOptional<z.ZodString>;
     ped: z.ZodOptional<z.ZodString>;

package/dist/mcp-server/tools/definitions/brapi-export-genotype-matrix.tool.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"brapi-export-genotype-matrix.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-export-genotype-matrix.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;GA4BG;AAGH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AA2GjE,eAAO,MAAM,yBAAyB~~;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;~~cAyNpC,CAAC"}
1	+ {"version":3,"file":"brapi-export-genotype-matrix.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-export-genotype-matrix.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;GA4BG;AAGH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AA2GjE,eAAO,MAAM,yBAAyB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;cAyNpC,CAAC"}

package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.d.ts CHANGED Viewed

@@ -62,6 +62,7 @@ export declare const brapiFindGenotypeCalls: import("@cyanheads/mcp-ts-core").To
         expiresAt: z.ZodString;
         truncated: z.ZodOptional<z.ZodBoolean>;
         maxRows: z.ZodOptional<z.ZodNumber>;
+        totalCount: z.ZodOptional<z.ZodNumber>;
     }, z.core.$strip>>;
     truncated: z.ZodBoolean;
 }, z.core.$strip>, readonly [{

package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"brapi-find-genotype-calls.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;GAYG;AAEH,OAAO,EAAsB,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAC/D,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;~~AAgHjE~~,eAAO,MAAM,sBAAsB~~;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EAqQjC~~,CAAC"}
1	+ {"version":3,"file":"brapi-find-genotype-calls.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;GAYG;AAEH,OAAO,EAAsB,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAC/D,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAiHjE,eAAO,MAAM,sBAAsB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EAwQjC,CAAC"}

package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.js CHANGED Viewed

@@ -18,7 +18,7 @@ import { getBrapiClient } from '../../../services/brapi-client/index.js';
 import { resolveDialect } from '../../../services/brapi-dialect/index.js';
 import { getCanvasBridge, } from '../../../services/canvas-bridge/index.js';
 import { getCapabilityRegistry } from '../../../services/capability-registry/index.js';
-import { AliasInput, asString, collectPassthroughParts, computeDistribution, DataframeHandleSchema, renderDataframeHandle, renderDistributions, renderFindHeader, requireRegisteredConnection, toDataframeHandle, } from '../shared/find-helpers.js';
+import { AliasInput, asString, collectPassthroughParts, computeDistribution, DataframeHandleSchema, renderDataframeHandle, renderDistributions, renderFindHeader, requireRegisteredConnection, toDataframeHandle, truncationMeta, } from '../shared/find-helpers.js';
 import { buildCallsSearchBody, collectCalls } from '../shared/genotype-calls.js';
 const CallRowSchema = z
     .object({
@@ -277,7 +277,8 @@ export const brapiFindGenotypeCalls = tool('brapi_find_genotype_calls', {
         lines.push(`- sepUnphased: ${f.sepUnphased ?? '—'}`);
         lines.push('');
         lines.push('## Distributions');
-        lines.push(renderDistributions(result.distributions) || '_No values to summarize._');
+        lines.push(renderDistributions(result.distributions, truncationMeta(result.dataframe)) ||
+            '_No values to summarize._');
         lines.push('');
         lines.push('## Calls');
         if (result.results.length === 0) {

package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/mcp-server/tools/definitions/brapi-find-germplasm.tool.d.ts CHANGED Viewed

@@ -63,6 +63,7 @@ export declare const brapiFindGermplasm: import("@cyanheads/mcp-ts-core").ToolDe
         expiresAt: z.ZodString;
         truncated: z.ZodOptional<z.ZodBoolean>;
         maxRows: z.ZodOptional<z.ZodNumber>;
+        totalCount: z.ZodOptional<z.ZodNumber>;
     }, z.core.$strip>>;
 }, z.core.$strip>, readonly [{
     readonly reason: "unknown_alias";

package/dist/mcp-server/tools/definitions/brapi-find-germplasm.tool.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"brapi-find-germplasm.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-find-germplasm.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;~~AAmIjE~~,eAAO,MAAM,kBAAkB~~;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EAwW7B~~,CAAC"}
1	+ {"version":3,"file":"brapi-find-germplasm.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-find-germplasm.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAoIjE,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EA2W7B,CAAC"}

package/dist/mcp-server/tools/definitions/brapi-find-germplasm.tool.js CHANGED Viewed

@@ -13,7 +13,7 @@ import { getBrapiClient } from '../../../services/brapi-client/index.js';
 import { resolveDialect } from '../../../services/brapi-dialect/index.js';
 import { getCanvasBridge } from '../../../services/canvas-bridge/index.js';
 import { getCapabilityRegistry } from '../../../services/capability-registry/index.js';
-import { AliasInput, applyDialectFiltersOrFail, asString, buildExtraFilterChecks, buildRefinementHint, checkFilterMatchRates, collectPassthroughParts, computeDistribution, DataframeHandleSchema, dedupSynonymsByIdentity, dialectRowMapper, ExtraFiltersInput, LoadLimitInput, loadInitialFindPage, maybeSpill, mergeFilters, renderDataframeHandle, renderDistributions, renderFindHeader, requireRegisteredConnection, resolveFindRoute, } from '../shared/find-helpers.js';
+import { AliasInput, applyDialectFiltersOrFail, asString, buildExtraFilterChecks, buildRefinementHint, checkFilterMatchRates, collectPassthroughParts, computeDistribution, DataframeHandleSchema, dedupSynonymsByIdentity, dialectRowMapper, ExtraFiltersInput, LoadLimitInput, loadInitialFindPage, maybeSpill, mergeFilters, renderDataframeHandle, renderDistributions, renderFindHeader, requireRegisteredConnection, resolveFindRoute, truncationMeta, } from '../shared/find-helpers.js';
 const GermplasmRowSchema = z
     .object({
     germplasmDbId: z.string().describe('Server-side identifier for the germplasm.'),
@@ -355,7 +355,8 @@ export const brapiFindGermplasm = tool('brapi_find_germplasm', {
             lines.push('');
         }
         lines.push('## Distributions');
-        lines.push(renderDistributions(result.distributions) || '_No values to summarize._');
+        lines.push(renderDistributions(result.distributions, truncationMeta(result.dataframe)) ||
+            '_No values to summarize._');
         lines.push('');
         lines.push('## Germplasm');
         if (result.results.length === 0) {

package/dist/mcp-server/tools/definitions/brapi-find-germplasm.tool.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/mcp-server/tools/definitions/brapi-find-images.tool.d.ts CHANGED Viewed

@@ -56,6 +56,7 @@ export declare const brapiFindImages: import("@cyanheads/mcp-ts-core").ToolDefin
         expiresAt: z.ZodString;
         truncated: z.ZodOptional<z.ZodBoolean>;
         maxRows: z.ZodOptional<z.ZodNumber>;
+        totalCount: z.ZodOptional<z.ZodNumber>;
     }, z.core.$strip>>;
 }, z.core.$strip>, readonly [{
     readonly reason: "unknown_alias";

package/dist/mcp-server/tools/definitions/brapi-find-images.tool.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"brapi-find-images.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-find-images.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;~~AA4HjE~~,eAAO,MAAM,eAAe~~;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EAgS1B~~,CAAC"}
1	+ {"version":3,"file":"brapi-find-images.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-find-images.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AA6HjE,eAAO,MAAM,eAAe;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EAmS1B,CAAC"}

package/dist/mcp-server/tools/definitions/brapi-find-images.tool.js CHANGED Viewed

@@ -13,7 +13,7 @@ import { getBrapiClient } from '../../../services/brapi-client/index.js';
 import { resolveDialect } from '../../../services/brapi-dialect/index.js';
 import { getCanvasBridge } from '../../../services/canvas-bridge/index.js';
 import { getCapabilityRegistry } from '../../../services/capability-registry/index.js';
-import { AliasInput, applyDialectFiltersOrFail, asString, buildExtraFilterChecks, buildRefinementHint, checkFilterMatchRates, collectPassthroughParts, computeDistribution, DataframeHandleSchema, dialectRowMapper, ExtraFiltersInput, fkMatchCheck, LoadLimitInput, loadInitialFindPage, maybeSpill, mergeFilters, renderDataframeHandle, renderDistributions, renderFindHeader, requireRegisteredConnection, resolveFindRoute, } from '../shared/find-helpers.js';
+import { AliasInput, applyDialectFiltersOrFail, asString, buildExtraFilterChecks, buildRefinementHint, checkFilterMatchRates, collectPassthroughParts, computeDistribution, DataframeHandleSchema, dialectRowMapper, ExtraFiltersInput, fkMatchCheck, LoadLimitInput, loadInitialFindPage, maybeSpill, mergeFilters, renderDataframeHandle, renderDistributions, renderFindHeader, requireRegisteredConnection, resolveFindRoute, truncationMeta, } from '../shared/find-helpers.js';
 const ImageRowSchema = z
     .object({
     imageDbId: z.string().describe('Server-side identifier for the image.'),
@@ -298,7 +298,8 @@ export const brapiFindImages = tool('brapi_find_images', {
             lines.push('');
         }
         lines.push('## Distributions');
-        lines.push(renderDistributions(result.distributions) || '_No values to summarize._');
+        lines.push(renderDistributions(result.distributions, truncationMeta(result.dataframe)) ||
+            '_No values to summarize._');
         lines.push('');
         lines.push('## Images');
         if (result.results.length === 0) {

package/dist/mcp-server/tools/definitions/brapi-find-images.tool.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/mcp-server/tools/definitions/brapi-find-locations.tool.d.ts CHANGED Viewed

@@ -55,6 +55,7 @@ export declare const brapiFindLocations: import("@cyanheads/mcp-ts-core").ToolDe
         expiresAt: z.ZodString;
         truncated: z.ZodOptional<z.ZodBoolean>;
         maxRows: z.ZodOptional<z.ZodNumber>;
+        totalCount: z.ZodOptional<z.ZodNumber>;
     }, z.core.$strip>>;
     coordinateAxisOrder: z.ZodEnum<{
         spec: "spec";

package/dist/mcp-server/tools/definitions/brapi-find-locations.tool.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"brapi-find-locations.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-find-locations.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;~~AAiHjE~~,eAAO,MAAM,kBAAkB~~;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EA8W7B~~,CAAC"}
1	+ {"version":3,"file":"brapi-find-locations.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-find-locations.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAkHjE,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EAiX7B,CAAC"}

package/dist/mcp-server/tools/definitions/brapi-find-locations.tool.js CHANGED Viewed

@@ -14,7 +14,7 @@ import { getBrapiClient } from '../../../services/brapi-client/index.js';
 import { resolveDialect } from '../../../services/brapi-dialect/index.js';
 import { getCanvasBridge } from '../../../services/canvas-bridge/index.js';
 import { getCapabilityRegistry } from '../../../services/capability-registry/index.js';
-import { AliasInput, applyDialectFiltersOrFail, asString, buildExtraFilterChecks, buildRefinementHint, checkFilterMatchRates, collectPassthroughParts, computeDistribution, DataframeHandleSchema, dialectRowMapper, ExtraFiltersInput, extractCoordinates, hasPointGeometry, LoadLimitInput, loadInitialFindPage, maybeSpill, mergeFilters, renderDataframeHandle, renderDistributions, renderFindHeader, requireRegisteredConnection, resolveFindRoute, } from '../shared/find-helpers.js';
+import { AliasInput, applyDialectFiltersOrFail, asString, buildExtraFilterChecks, buildRefinementHint, checkFilterMatchRates, collectPassthroughParts, computeDistribution, DataframeHandleSchema, dialectRowMapper, ExtraFiltersInput, extractCoordinates, hasPointGeometry, LoadLimitInput, loadInitialFindPage, maybeSpill, mergeFilters, renderDataframeHandle, renderDistributions, renderFindHeader, requireRegisteredConnection, resolveFindRoute, truncationMeta, } from '../shared/find-helpers.js';
 const LocationRowSchema = z
     .object({
     locationDbId: z.string().describe('Server-side identifier for the location.'),
@@ -353,7 +353,8 @@ export const brapiFindLocations = tool('brapi_find_locations', {
             lines.push('');
         }
         lines.push('## Distributions');
-        lines.push(renderDistributions(result.distributions) || '_No values to summarize._');
+        lines.push(renderDistributions(result.distributions, truncationMeta(result.dataframe)) ||
+            '_No values to summarize._');
         lines.push('');
         lines.push('## Locations');
         if (result.results.length === 0) {