@cyanheads/brapi-mcp-server 0.7.1 → 0.7.2

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Files changed (6) hide show
  1. package/CLAUDE.md +5 -1
  2. package/README.md +1 -1
  3. package/changelog/0.7.x/0.7.2.md +14 -0
  4. package/manifest.json +1 -1
  5. package/package.json +3 -2
  6. package/server.json +3 -3
package/CLAUDE.md CHANGED
@@ -1,7 +1,7 @@
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  # Agent Protocol
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  **Server:** brapi-mcp-server
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- **Version:** 0.7.1
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+ **Version:** 0.7.2
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  **Framework:** [@cyanheads/mcp-ts-core](https://www.npmjs.com/package/@cyanheads/mcp-ts-core)
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  > **Read the framework docs first:** `node_modules/@cyanheads/mcp-ts-core/CLAUDE.md` contains the full API reference — builders, Context, error codes, exports, patterns. This file covers server-specific conventions only.
@@ -322,6 +322,7 @@ Available skills:
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  | `git-wrapup` | Land working-tree changes as a versioned commit + annotated tag — version bump, changelog, verify, tag. Local only. |
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  | `release-and-publish` | Push + npm + MCP Registry + GH Release + Docker. Picks up from `git-wrapup` |
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  | `maintenance` | Investigate changelogs, adopt upstream changes, sync skills to agent dirs |
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+ | `orchestrations` | Chain task skills into a gated multi-phase pipeline — build-out, QA-fix, update-ship — when you can spawn sub-agents |
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  | `report-issue-framework` | File a bug or feature request against `@cyanheads/mcp-ts-core` via `gh` CLI |
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  | `report-issue-local` | File a bug or feature request against this server's own repo via `gh` CLI |
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  | `api-auth` | Auth modes, scopes, JWT/OAuth |
@@ -330,12 +331,15 @@ Available skills:
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  | `api-config` | AppConfig, parseConfig, env vars |
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  | `api-context` | Context interface, logger, state, progress |
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  | `api-errors` | McpError, JsonRpcErrorCode, error patterns |
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+ | `api-mirror` | MirrorService: persistent SQLite-backed local mirror of a bulk upstream dataset with FTS5 — Tier 3 opt-in |
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  | `api-services` | LLM, Speech, Graph services |
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  | `api-telemetry` | OTel catalog: spans, metrics, completion logs, env config, cardinality rules |
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  | `api-testing` | createMockContext, test patterns |
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  | `api-utils` | Formatting, parsing, security, pagination, scheduling, telemetry helpers |
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  | `api-workers` | Cloudflare Workers runtime |
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+ **Chaining skills into pipelines.** When the user wants a multi-phase effort — build this server out, QA-and-fix the surface, update-and-ship — *and you can spawn sub-agents*, `skills/orchestrations/SKILL.md` sequences the task skills above into a gated pipeline with verification at each step. Read it to drive the run. Optional: skip it if you can't orchestrate sub-agents, and ignore it entirely if you were *spawned* as one — you've already been scoped to a single phase.
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+
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  When you complete a skill's checklist, check the boxes and add a completion timestamp at the end (e.g., `Completed: 2026-03-11`).
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  ---
package/README.md CHANGED
@@ -7,7 +7,7 @@
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  <div align="center">
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- [![npm](https://img.shields.io/npm/v/@cyanheads/brapi-mcp-server?style=flat-square&logo=npm&logoColor=white)](https://www.npmjs.com/package/@cyanheads/brapi-mcp-server) [![Version](https://img.shields.io/badge/Version-0.7.1-blue.svg?style=flat-square)](./CHANGELOG.md) [![MCP SDK](https://img.shields.io/badge/MCP%20SDK-^1.29.0-green.svg?style=flat-square)](https://modelcontextprotocol.io/) [![License](https://img.shields.io/badge/License-Apache%202.0-orange.svg?style=flat-square)](./LICENSE) [![TypeScript](https://img.shields.io/badge/TypeScript-^6.0.3-3178C6.svg?style=flat-square)](https://www.typescriptlang.org/) [![Bun](https://img.shields.io/badge/Bun-v1.3.11-blueviolet.svg?style=flat-square)](https://bun.sh/) [![Status](https://img.shields.io/badge/Status-Beta-yellow.svg?style=flat-square)](./CHANGELOG.md)
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+ [![npm](https://img.shields.io/npm/v/@cyanheads/brapi-mcp-server?style=flat-square&logo=npm&logoColor=white)](https://www.npmjs.com/package/@cyanheads/brapi-mcp-server) [![Version](https://img.shields.io/badge/Version-0.7.2-blue.svg?style=flat-square)](./CHANGELOG.md) [![MCP SDK](https://img.shields.io/badge/MCP%20SDK-^1.29.0-green.svg?style=flat-square)](https://modelcontextprotocol.io/) [![License](https://img.shields.io/badge/License-Apache%202.0-orange.svg?style=flat-square)](./LICENSE) [![TypeScript](https://img.shields.io/badge/TypeScript-^6.0.3-3178C6.svg?style=flat-square)](https://www.typescriptlang.org/) [![Bun](https://img.shields.io/badge/Bun-v1.3.11-blueviolet.svg?style=flat-square)](https://bun.sh/) [![Status](https://img.shields.io/badge/Status-Beta-yellow.svg?style=flat-square)](./CHANGELOG.md)
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  </div>
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package/changelog/0.7.x/0.7.2.md ADDED
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+ ---
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+ summary: "Adopt @cyanheads/mcp-ts-core 0.9.21 — HTTP log context fix, secret-safe error messages, fail-fast retries"
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+ breaking: false
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+ security: false
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+ ---
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+
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+ # 0.7.2 — 2026-06-02
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+
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+ ## Changed
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+
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+ - **`@cyanheads/mcp-ts-core`** `^0.9.16` → `^0.9.21` — framework adoption covering three fixes: per-request logs and traces now carry fresh request and trace/span IDs instead of the frozen boot context (HTTP transport); `fetchWithTimeout` strips query-string secrets (e.g. `?api_key=`) from error messages and logs; `withRetry` fails fast on non-retryable errors and `ctx.fail` auto-populates the `retryable` flag.
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+ - **`skills/`** — 8 updated (`add-tool`, `add-service`, `api-canvas`, `api-context`, `api-linter`, `api-utils`, `design-mcp-server`, `release-and-publish`) + 2 new (`api-mirror`, `orchestrations`); synced to `.claude/skills/` and `.agents/skills/`.
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+ - **`CLAUDE.md` / `AGENTS.md`** — skill table updated with `orchestrations` and `api-mirror` entries.
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+ - **`scripts/`** — added `devcheck.ts`, `check-skill-versions.ts`, and `release-github.ts`; `release:github` script added to `package.json`.
package/manifest.json CHANGED
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  {
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  "manifest_version": "0.3",
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  "name": "brapi-mcp-server",
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- "version": "0.7.1",
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+ "version": "0.7.2",
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  "description": "Collaborative BrAPI v2.1 MCP workspace — studies, germplasm, genotypes across Breedbase, T3, more.",
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  "author": {
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  "name": "cyanheads"
package/package.json CHANGED
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  {
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  "name": "@cyanheads/brapi-mcp-server",
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  "mcpName": "io.github.cyanheads/brapi-mcp-server",
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- "version": "0.7.1",
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+ "version": "0.7.2",
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  "description": "A collaborative BrAPI v2.1 workspace for multi-agent research via MCP. Search studies, germplasm, genotypes, & more - across Breedbase, T3, Sweetpotatobase, & any BrAPI v2-compliant server.",
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  "author": "Casey Hand @cyanheads (https://github.com/cyanheads/brapi-mcp-server#readme)",
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  "type": "module",
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  "audit:refresh": "rm -f bun.lock && bun install && bun audit",
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  "changelog:build": "bun run scripts/build-changelog.ts",
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  "changelog:check": "bun run scripts/build-changelog.ts --check",
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+ "release:github": "bun run scripts/release-github.ts",
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  "test": "bunx --bun vitest run",
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  "publish-mcp": "mcp-publisher login github -token \"$(security find-generic-password -a \"$USER\" -s mcp-publisher-github-pat -w)\" && mcp-publisher publish",
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  "start": "bun ./dist/index.js",
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  "access": "public"
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  },
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  "dependencies": {
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- "@cyanheads/mcp-ts-core": "^0.9.16",
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+ "@cyanheads/mcp-ts-core": "^0.9.21",
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  "@duckdb/node-api": "^1.5.3-r.3",
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  "pino-pretty": "^13.1.3",
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  "zod": "^4.4.3"
package/server.json CHANGED
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  "url": "https://github.com/cyanheads/brapi-mcp-server",
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  "source": "github"
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  },
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- "version": "0.7.1",
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+ "version": "0.7.2",
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  "packages": [
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  {
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  "registryType": "npm",
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  "registryBaseUrl": "https://registry.npmjs.org",
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  "identifier": "@cyanheads/brapi-mcp-server",
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  "runtimeHint": "bun",
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- "version": "0.7.1",
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+ "version": "0.7.2",
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  "packageArguments": [
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  { "type": "positional", "value": "run" },
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  { "type": "positional", "value": "start:stdio" }
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  "registryBaseUrl": "https://registry.npmjs.org",
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  "identifier": "@cyanheads/brapi-mcp-server",
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  "runtimeHint": "bun",
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- "version": "0.7.1",
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+ "version": "0.7.2",
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  "packageArguments": [
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  { "type": "positional", "value": "run" },
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  { "type": "positional", "value": "start:http" }