@cyanheads/brapi-mcp-server 0.6.0 → 0.6.1

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Files changed (14) hide show
  1. package/CLAUDE.md +1 -1
  2. package/README.md +1 -1
  3. package/changelog/0.6.x/0.6.1.md +13 -0
  4. package/dist/mcp-server/tools/definitions/brapi-find-images.tool.d.ts +3 -3
  5. package/dist/mcp-server/tools/definitions/brapi-find-images.tool.d.ts.map +1 -1
  6. package/dist/mcp-server/tools/definitions/brapi-find-images.tool.js +12 -3
  7. package/dist/mcp-server/tools/definitions/brapi-find-images.tool.js.map +1 -1
  8. package/dist/mcp-server/tools/definitions/brapi-get-image.tool.d.ts +2 -2
  9. package/dist/mcp-server/tools/definitions/brapi-get-image.tool.d.ts.map +1 -1
  10. package/dist/mcp-server/tools/definitions/brapi-get-image.tool.js +42 -15
  11. package/dist/mcp-server/tools/definitions/brapi-get-image.tool.js.map +1 -1
  12. package/dist/mcp-server/tools/definitions/index.d.ts +5 -5
  13. package/package.json +1 -1
  14. package/server.json +3 -3
package/CLAUDE.md CHANGED
@@ -1,7 +1,7 @@
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  # Agent Protocol
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  **Server:** brapi-mcp-server
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- **Version:** 0.5.5
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+ **Version:** 0.6.1
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  **Framework:** [@cyanheads/mcp-ts-core](https://www.npmjs.com/package/@cyanheads/mcp-ts-core)
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  > **Read the framework docs first:** `node_modules/@cyanheads/mcp-ts-core/CLAUDE.md` contains the full API reference — builders, Context, error codes, exports, patterns. This file covers server-specific conventions only.
package/README.md CHANGED
@@ -7,7 +7,7 @@
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  <div align="center">
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- [![npm](https://img.shields.io/npm/v/@cyanheads/brapi-mcp-server?style=flat-square&logo=npm&logoColor=white)](https://www.npmjs.com/package/@cyanheads/brapi-mcp-server) [![Version](https://img.shields.io/badge/Version-0.6.0-blue.svg?style=flat-square)](./CHANGELOG.md) [![Framework](https://img.shields.io/badge/Built%20on-@cyanheads/mcp--ts--core-259?style=flat-square)](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) [![MCP SDK](https://img.shields.io/badge/MCP%20SDK-^1.29.0-green.svg?style=flat-square)](https://modelcontextprotocol.io/)
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+ [![npm](https://img.shields.io/npm/v/@cyanheads/brapi-mcp-server?style=flat-square&logo=npm&logoColor=white)](https://www.npmjs.com/package/@cyanheads/brapi-mcp-server) [![Version](https://img.shields.io/badge/Version-0.6.1-blue.svg?style=flat-square)](./CHANGELOG.md) [![Framework](https://img.shields.io/badge/Built%20on-@cyanheads/mcp--ts--core-259?style=flat-square)](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) [![MCP SDK](https://img.shields.io/badge/MCP%20SDK-^1.29.0-green.svg?style=flat-square)](https://modelcontextprotocol.io/)
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  [![License](https://img.shields.io/badge/License-Apache%202.0-orange.svg?style=flat-square)](./LICENSE) [![TypeScript](https://img.shields.io/badge/TypeScript-^6.0.3-3178C6.svg?style=flat-square)](https://www.typescriptlang.org/) [![Bun](https://img.shields.io/badge/Bun-v1.3.11-blueviolet.svg?style=flat-square)](https://bun.sh/) [![Status](https://img.shields.io/badge/Status-Beta-yellow.svg?style=flat-square)](./CHANGELOG.md)
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package/changelog/0.6.x/0.6.1.md ADDED
@@ -0,0 +1,13 @@
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+ ---
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+ summary: "Three field-test fixes against T3 / Breedbase image surfaces: collapse double slashes in resolved imageURL paths, wire the SGN row normalizer through brapi_get_image, and coerce numeric-string image dimensions at schema-validation time."
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+ breaking: false
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+ security: false
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+ ---
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+
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+ # 0.6.1 — 2026-05-22
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+
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+ ## Fixed
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+
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+ - **`brapi_get_image` collapses double slashes in resolved `imageURL`** ([`src/mcp-server/tools/definitions/brapi-get-image.tool.ts`](./src/mcp-server/tools/definitions/brapi-get-image.tool.ts)) — `resolveImageUrl` now parses the resolved URL and replaces consecutive slashes in `pathname` with a single slash, leaving the query string and fragment untouched. T3-family servers occasionally emit absolute `imageURL` values like `https://wheat.triticeaetoolbox.org//data/images/abc.jpg`; the verbatim fetch 404'd. Same pass also documents the four schemeless cases the resolver handles.
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+ - **SGN row normalizer wired into `brapi_get_image`** ([`src/mcp-server/tools/definitions/brapi-get-image.tool.ts`](./src/mcp-server/tools/definitions/brapi-get-image.tool.ts)) — the singleton `/images/{imageDbId}` fetch now runs through `dialect.normalizeRow('images', …)` before output validation. CassavaBase / Breedbase emit `description: null`, `copyright: null` etc. for unset fields; without the normalizer the upstream null reached `z.string().optional()` and tripped output-schema rejection. The find_* surface already had this wired; the per-id path was the gap.
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+ - **Numeric-string image dimensions coerced at schema-validation time** ([`src/mcp-server/tools/definitions/brapi-find-images.tool.ts`](./src/mcp-server/tools/definitions/brapi-find-images.tool.ts), [`src/mcp-server/tools/definitions/brapi-get-image.tool.ts`](./src/mcp-server/tools/definitions/brapi-get-image.tool.ts)) — `imageHeight`, `imageWidth`, and `imageFileSize` now use `z.coerce.number()` instead of bare `z.number()`. T3 and Breedbase commonly serialize these as strings (`"480"` rather than `480`); the row normalizer strips nulls but doesn't coerce types, so the upstream string reached the schema and Zod rejected with `Invalid input: expected number, received string`. Coercion runs at the framework's output-parse boundary — the inline handler return continues to mirror the upstream shape.
package/dist/mcp-server/tools/definitions/brapi-find-images.tool.d.ts CHANGED
@@ -25,9 +25,9 @@ export declare const brapiFindImages: import("@cyanheads/mcp-ts-core").ToolDefin
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  imageDbId: z.ZodString;
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  imageName: z.ZodOptional<z.ZodNullable<z.ZodString>>;
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  imageFileName: z.ZodOptional<z.ZodNullable<z.ZodString>>;
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- imageFileSize: z.ZodOptional<z.ZodNullable<z.ZodNumber>>;
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- imageHeight: z.ZodOptional<z.ZodNullable<z.ZodNumber>>;
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- imageWidth: z.ZodOptional<z.ZodNullable<z.ZodNumber>>;
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+ imageFileSize: z.ZodOptional<z.ZodNullable<z.ZodCoercedNumber<unknown>>>;
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+ imageHeight: z.ZodOptional<z.ZodNullable<z.ZodCoercedNumber<unknown>>>;
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+ imageWidth: z.ZodOptional<z.ZodNullable<z.ZodCoercedNumber<unknown>>>;
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  mimeType: z.ZodOptional<z.ZodNullable<z.ZodString>>;
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  imageTimeStamp: z.ZodOptional<z.ZodNullable<z.ZodString>>;
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  imageURL: z.ZodOptional<z.ZodNullable<z.ZodString>>;
package/dist/mcp-server/tools/definitions/brapi-find-images.tool.d.ts.map CHANGED
@@ -1 +1 @@
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+ {"version":3,"file":"brapi-find-images.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-find-images.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAyIjE,eAAO,MAAM,eAAe;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAyP1B,CAAC"}
package/dist/mcp-server/tools/definitions/brapi-find-images.tool.js CHANGED
@@ -19,9 +19,18 @@ const ImageRowSchema = z
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  imageDbId: z.string().describe('Server-side identifier for the image.'),
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  imageName: z.string().nullish().describe('Display name.'),
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  imageFileName: z.string().nullish().describe('Original uploaded filename.'),
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- imageFileSize: z.number().nullish().describe('File size in bytes.'),
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- imageHeight: z.number().nullish().describe('Pixel height.'),
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- imageWidth: z.number().nullish().describe('Pixel width.'),
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+ imageFileSize: z.coerce
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+ .number()
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+ .nullish()
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+ .describe('File size in bytes. Coerced from string when the upstream emits a numeric string.'),
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+ imageHeight: z.coerce
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+ .number()
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+ .nullish()
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+ .describe('Pixel height. Coerced from string when the upstream emits a numeric string.'),
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+ imageWidth: z.coerce
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+ .number()
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+ .nullish()
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+ .describe('Pixel width. Coerced from string when the upstream emits a numeric string.'),
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  mimeType: z.string().nullish().describe('MIME type (e.g. "image/jpeg").'),
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  imageTimeStamp: z.string().nullish().describe('ISO 8601 capture timestamp.'),
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  imageURL: z
package/dist/mcp-server/tools/definitions/brapi-find-images.tool.js.map CHANGED
@@ -1 +1 @@
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package/dist/mcp-server/tools/definitions/brapi-get-image.tool.d.ts CHANGED
@@ -27,8 +27,8 @@ export declare const brapiGetImage: import("@cyanheads/mcp-ts-core").ToolDefinit
27
27
  imageDbId: z.ZodString;
28
28
  imageName: z.ZodOptional<z.ZodString>;
29
29
  imageFileName: z.ZodOptional<z.ZodString>;
30
- imageHeight: z.ZodOptional<z.ZodNumber>;
31
- imageWidth: z.ZodOptional<z.ZodNumber>;
30
+ imageHeight: z.ZodOptional<z.ZodCoercedNumber<unknown>>;
31
+ imageWidth: z.ZodOptional<z.ZodCoercedNumber<unknown>>;
32
32
  mimeType: z.ZodOptional<z.ZodString>;
33
33
  imageURL: z.ZodOptional<z.ZodString>;
34
34
  observationUnitDbId: z.ZodOptional<z.ZodString>;
package/dist/mcp-server/tools/definitions/brapi-get-image.tool.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"brapi-get-image.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-get-image.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AA0EjE,eAAO,MAAM,aAAa;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GA+JxB,CAAC"}
1
+ {"version":3,"file":"brapi-get-image.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-get-image.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAiFjE,eAAO,MAAM,aAAa;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAiKxB,CAAC"}
package/dist/mcp-server/tools/definitions/brapi-get-image.tool.js CHANGED
@@ -10,6 +10,7 @@
10
10
  import { tool, z } from '@cyanheads/mcp-ts-core';
11
11
  import { JsonRpcErrorCode } from '@cyanheads/mcp-ts-core/errors';
12
12
  import { getBrapiClient } from '../../../services/brapi-client/index.js';
13
+ import { resolveDialect } from '../../../services/brapi-dialect/index.js';
13
14
  import { getCapabilityRegistry } from '../../../services/capability-registry/index.js';
14
15
  import { AliasInput, appendPassthroughLines, buildRequestOptions, requireRegisteredConnection, } from '../shared/find-helpers.js';
15
16
  const MAX_IMAGES_PER_CALL = 5;
@@ -19,8 +20,14 @@ const ImageMetadataSchema = z
19
20
  imageDbId: z.string().describe('Server-side identifier for the image.'),
20
21
  imageName: z.string().optional().describe('Display name.'),
21
22
  imageFileName: z.string().optional().describe('Original uploaded filename.'),
22
- imageHeight: z.number().optional().describe('Pixel height.'),
23
- imageWidth: z.number().optional().describe('Pixel width.'),
23
+ imageHeight: z.coerce
24
+ .number()
25
+ .optional()
26
+ .describe('Pixel height. Coerced from string when the upstream emits a numeric string.'),
27
+ imageWidth: z.coerce
28
+ .number()
29
+ .optional()
30
+ .describe('Pixel width. Coerced from string when the upstream emits a numeric string.'),
24
31
  mimeType: z.string().optional().describe('MIME type (e.g. "image/jpeg").'),
25
32
  imageURL: z.string().optional().describe('URL where the bytes live.'),
26
33
  observationUnitDbId: z
@@ -107,7 +114,8 @@ export const brapiGetImage = tool('brapi_get_image', {
107
114
  const hasImageContent = Boolean(imagecontentDescriptor &&
108
115
  (imagecontentDescriptor.methods === undefined ||
109
116
  imagecontentDescriptor.methods.includes('GET')));
110
- const loaded = await Promise.all(input.imageDbIds.map((id) => fetchOne(id, hasImageContent, connection, client, ctx)));
117
+ const dialect = await resolveDialect(connection, ctx, capabilityLookup);
118
+ const loaded = await Promise.all(input.imageDbIds.map((id) => fetchOne(id, hasImageContent, connection, dialect, client, ctx)));
111
119
  const images = [];
112
120
  const errors = [];
113
121
  const warnings = [];
@@ -215,14 +223,17 @@ export const brapiGetImage = tool('brapi_get_image', {
215
223
  return blocks;
216
224
  },
217
225
  });
218
- async function fetchOne(imageDbId, hasImageContent, connection, client, ctx) {
226
+ async function fetchOne(imageDbId, hasImageContent, connection, dialect, client, ctx) {
219
227
  try {
220
228
  const id = encodeURIComponent(imageDbId);
221
229
  const metaEnv = await client.get(connection.baseUrl, `/images/${id}`, ctx, buildRequestOptions(connection));
222
- const metadata = metaEnv.result;
223
- if (!metadata || typeof metadata !== 'object' || !metadata.imageDbId) {
230
+ const rawMetadata = metaEnv.result;
231
+ if (!rawMetadata || typeof rawMetadata !== 'object' || !rawMetadata.imageDbId) {
224
232
  return { kind: 'error', imageDbId, error: 'Image metadata missing or malformed.' };
225
233
  }
234
+ const metadata = dialect.normalizeRow
235
+ ? dialect.normalizeRow('images', rawMetadata)
236
+ : rawMetadata;
226
237
  const fetched = await fetchBytes({
227
238
  client,
228
239
  connection,
@@ -296,7 +307,7 @@ async function fetchBytes(input) {
296
307
  }
297
308
  /**
298
309
  * Resolve an `imageURL` metadata value to an absolute fetchable URL.
299
- * Three input shapes are handled:
310
+ * Four input shapes are handled:
300
311
  * 1. Absolute URL (`https://host/path`, `http://host/path`) — returned as-is.
301
312
  * 2. Schemeless protocol-relative (`//host/path`) — prefixed with `https:`.
302
313
  * 3. Schemeless domain-shaped (`host.tld/path`, e.g. Breedbase's
@@ -304,17 +315,33 @@ async function fetchBytes(input) {
304
315
  * 4. Root-relative or relative path (`/path` or `path`) — concatenated with
305
316
  * the BrAPI baseUrl. This is the legitimate "image is hosted on the same
306
317
  * BrAPI server" case.
318
+ *
319
+ * After resolution, multiple consecutive slashes in the pathname are
320
+ * collapsed to a single slash. Several upstreams (T3 family) emit
321
+ * `imageURL` values with stray double slashes (`host//data/...`) that
322
+ * 404 verbatim; the cleanup keeps query string and fragment intact.
307
323
  */
308
324
  function resolveImageUrl(baseUrl, imageUrl) {
325
+ let resolved;
309
326
  if (imageUrl.startsWith('http://') || imageUrl.startsWith('https://'))
310
- return imageUrl;
311
- if (imageUrl.startsWith('//'))
312
- return `https:${imageUrl}`;
313
- if (SCHEMELESS_DOMAIN.test(imageUrl))
314
- return `https://${imageUrl}`;
315
- const trimmed = baseUrl.replace(/\/$/, '');
316
- const prefixed = imageUrl.startsWith('/') ? imageUrl : `/${imageUrl}`;
317
- return `${trimmed}${prefixed}`;
327
+ resolved = imageUrl;
328
+ else if (imageUrl.startsWith('//'))
329
+ resolved = `https:${imageUrl}`;
330
+ else if (SCHEMELESS_DOMAIN.test(imageUrl))
331
+ resolved = `https://${imageUrl}`;
332
+ else {
333
+ const trimmed = baseUrl.replace(/\/$/, '');
334
+ const prefixed = imageUrl.startsWith('/') ? imageUrl : `/${imageUrl}`;
335
+ resolved = `${trimmed}${prefixed}`;
336
+ }
337
+ try {
338
+ const url = new URL(resolved);
339
+ url.pathname = url.pathname.replace(/\/{2,}/g, '/');
340
+ return url.toString();
341
+ }
342
+ catch {
343
+ return resolved;
344
+ }
318
345
  }
319
346
  /**
320
347
  * Matches values that look like `domain.tld/path` or just `domain.tld` — a
package/dist/mcp-server/tools/definitions/brapi-get-image.tool.js.map CHANGED
@@ -1 +1 @@
1
- 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package/dist/mcp-server/tools/definitions/index.d.ts CHANGED
@@ -519,9 +519,9 @@ export declare const readOnlyToolDefinitions: (import("@cyanheads/mcp-ts-core").
519
519
  imageDbId: import("zod").ZodString;
520
520
  imageName: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
521
521
  imageFileName: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
522
- imageFileSize: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodNumber>>;
523
- imageHeight: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodNumber>>;
524
- imageWidth: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodNumber>>;
522
+ imageFileSize: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodCoercedNumber<unknown>>>;
523
+ imageHeight: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodCoercedNumber<unknown>>>;
524
+ imageWidth: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodCoercedNumber<unknown>>>;
525
525
  mimeType: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
526
526
  imageTimeStamp: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
527
527
  imageURL: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
@@ -925,8 +925,8 @@ export declare const readOnlyToolDefinitions: (import("@cyanheads/mcp-ts-core").
925
925
  imageDbId: import("zod").ZodString;
926
926
  imageName: import("zod").ZodOptional<import("zod").ZodString>;
927
927
  imageFileName: import("zod").ZodOptional<import("zod").ZodString>;
928
- imageHeight: import("zod").ZodOptional<import("zod").ZodNumber>;
929
- imageWidth: import("zod").ZodOptional<import("zod").ZodNumber>;
928
+ imageHeight: import("zod").ZodOptional<import("zod").ZodCoercedNumber<unknown>>;
929
+ imageWidth: import("zod").ZodOptional<import("zod").ZodCoercedNumber<unknown>>;
930
930
  mimeType: import("zod").ZodOptional<import("zod").ZodString>;
931
931
  imageURL: import("zod").ZodOptional<import("zod").ZodString>;
932
932
  observationUnitDbId: import("zod").ZodOptional<import("zod").ZodString>;
package/package.json CHANGED
@@ -1,7 +1,7 @@
1
1
  {
2
2
  "name": "@cyanheads/brapi-mcp-server",
3
3
  "mcpName": "io.github.cyanheads/brapi-mcp-server",
4
- "version": "0.6.0",
4
+ "version": "0.6.1",
5
5
  "description": "A collaborative BrAPI v2.1 workspace for multi-agent research via MCP. Search studies, germplasm, genotypes, & more - across Breedbase, T3, Sweetpotatobase, & any BrAPI v2-compliant server.",
6
6
  "author": "Casey Hand @cyanheads (https://github.com/cyanheads/brapi-mcp-server#readme)",
7
7
  "type": "module",
package/server.json CHANGED
@@ -6,14 +6,14 @@
6
6
  "url": "https://github.com/cyanheads/brapi-mcp-server",
7
7
  "source": "github"
8
8
  },
9
- "version": "0.6.0",
9
+ "version": "0.6.1",
10
10
  "packages": [
11
11
  {
12
12
  "registryType": "npm",
13
13
  "registryBaseUrl": "https://registry.npmjs.org",
14
14
  "identifier": "@cyanheads/brapi-mcp-server",
15
15
  "runtimeHint": "bun",
16
- "version": "0.6.0",
16
+ "version": "0.6.1",
17
17
  "packageArguments": [
18
18
  { "type": "positional", "value": "run" },
19
19
  { "type": "positional", "value": "start:stdio" }
@@ -49,7 +49,7 @@
49
49
  "registryBaseUrl": "https://registry.npmjs.org",
50
50
  "identifier": "@cyanheads/brapi-mcp-server",
51
51
  "runtimeHint": "bun",
52
- "version": "0.6.0",
52
+ "version": "0.6.1",
53
53
  "packageArguments": [
54
54
  { "type": "positional", "value": "run" },
55
55
  { "type": "positional", "value": "start:http" }