npm - @cyanheads/brapi-mcp-server - Versions diffs - 0.4.5 → 0.4.7 - Mend

@cyanheads/brapi-mcp-server 0.4.5 → 0.4.7

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (85) hide show

package/dist/mcp-server/tools/definitions/brapi-find-observations.tool.js CHANGED Viewed

@@ -8,13 +8,14 @@
  * @module mcp-server/tools/definitions/brapi-find-observations.tool
  */
 import { tool, z } from '@cyanheads/mcp-ts-core';
+import { JsonRpcErrorCode } from '@cyanheads/mcp-ts-core/errors';
 import { getServerConfig } from '../../../config/server-config.js';
 import { getBrapiClient } from '../../../services/brapi-client/index.js';
 import { resolveDialect } from '../../../services/brapi-dialect/index.js';
 import { getCapabilityRegistry } from '../../../services/capability-registry/index.js';
 import { getDatasetStore } from '../../../services/dataset-store/index.js';
 import { DEFAULT_ALIAS, getServerRegistry } from '../../../services/server-registry/index.js';
-import { AliasInput, applyDialectFilters, asString, buildRefinementHint, checkFilterMatchRates, collectPassthroughParts, computeDistribution, DatasetHandleSchema, ExtraFiltersInput, fkMatchCheck, LoadLimitInput, loadInitialFindPage, maybeSpill, mergeFilters, renderAppliedFilters, renderDatasetHandle, renderDistributions, renderFindHeader, resolveFindRoute, } from '../shared/find-helpers.js';
+import { AliasInput, applyDialectFiltersOrFail, asString, buildRefinementHint, checkFilterMatchRates, collectPassthroughParts, computeDistribution, DatasetHandleSchema, ExtraFiltersInput, fkMatchCheck, LoadLimitInput, loadInitialFindPage, maybeSpill, mergeFilters, renderAppliedFilters, renderDatasetHandle, renderDistributions, renderFindHeader, resolveFindRoute, } from '../shared/find-helpers.js';
 const ObservationRowSchema = z
     .object({
     observationDbId: z.string().nullish().describe('Server-side identifier for the observation.'),
@@ -147,6 +148,14 @@ const SERVER_TO_USER = {
 export const brapiFindObservations = tool('brapi_find_observations', {
     description: 'Pull observation records filtered by study, germplasm, variable, season, or observation unit. Returns a dataset handle when the upstream total exceeds loadLimit.',
     annotations: { readOnlyHint: true, openWorldHint: true },
+    errors: [
+        {
+            reason: 'all_filters_dropped',
+            code: JsonRpcErrorCode.ValidationError,
+            when: 'The active dialect dropped every filter the agent supplied — the upstream server does not honor any of the requested scope filters on this endpoint, so the call would silently widen to the unfiltered baseline.',
+            recovery: 'Drop the unsupported filters and rescope by germplasm, variables, observationUnits, observations, seasons, programs, or trials — these filter paths are honored on the active dialect.',
+        },
+    ],
     input: z.object({
         alias: AliasInput,
         studies: z.array(z.string()).optional().describe('Filter by studyDbIds.'),
@@ -193,7 +202,7 @@ export const brapiFindObservations = tool('brapi_find_observations', {
             observationTimeStampRangeStart: input.timestampFrom,
             observationTimeStampRangeEnd: input.timestampTo,
         }, input.extraFilters, warnings);
-        const filters = applyDialectFilters(dialect, 'observations', merged, warnings);
+        const filters = applyDialectFiltersOrFail(ctx, dialect, 'observations', merged, warnings);
         const route = resolveFindRoute({
             profile,
             dialect,

package/dist/mcp-server/tools/definitions/brapi-find-observations.tool.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/mcp-server/tools/definitions/brapi-find-studies.tool.d.ts CHANGED Viewed

@@ -8,6 +8,7 @@
  * @module mcp-server/tools/definitions/brapi-find-studies.tool
  */
 import { z } from '@cyanheads/mcp-ts-core';
+import { JsonRpcErrorCode } from '@cyanheads/mcp-ts-core/errors';
 export declare const brapiFindStudies: import("@cyanheads/mcp-ts-core").ToolDefinition<z.ZodObject<{
     alias: z.ZodOptional<z.ZodString>;
     crop: z.ZodOptional<z.ZodString>;
@@ -64,5 +65,10 @@ export declare const brapiFindStudies: import("@cyanheads/mcp-ts-core").ToolDefi
     }, z.core.$strip>>;
     warnings: z.ZodArray<z.ZodString>;
     appliedFilters: z.ZodRecord<z.ZodString, z.ZodUnknown>;
-}, z.core.$strip>, undefined>;
+}, z.core.$strip>, readonly [{
+    readonly reason: "all_filters_dropped";
+    readonly code: JsonRpcErrorCode.ValidationError;
+    readonly when: "The active dialect dropped every filter the agent supplied — the upstream server does not honor any of the requested scope filters on this endpoint, so the call would silently widen to the unfiltered baseline.";
+    readonly recovery: "Drop the unsupported filters and rescope by crop, trialTypes, seasons, programs, trials, studyNames, or active — these filter paths are honored on the active dialect.";
+}]>;
 //# sourceMappingURL=brapi-find-studies.tool.d.ts.map

package/dist/mcp-server/tools/definitions/brapi-find-studies.tool.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"brapi-find-studies.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-find-studies.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;~~AA4HjD~~,eAAO,MAAM,gBAAgB~~;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;6BAyO3B~~,CAAC"}
1	+ {"version":3,"file":"brapi-find-studies.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-find-studies.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AA4HjE,eAAO,MAAM,gBAAgB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAkP3B,CAAC"}

package/dist/mcp-server/tools/definitions/brapi-find-studies.tool.js CHANGED Viewed

@@ -8,13 +8,14 @@
  * @module mcp-server/tools/definitions/brapi-find-studies.tool
  */
 import { tool, z } from '@cyanheads/mcp-ts-core';
+import { JsonRpcErrorCode } from '@cyanheads/mcp-ts-core/errors';
 import { getServerConfig } from '../../../config/server-config.js';
 import { getBrapiClient } from '../../../services/brapi-client/index.js';
 import { resolveDialect } from '../../../services/brapi-dialect/index.js';
 import { getCapabilityRegistry } from '../../../services/capability-registry/index.js';
 import { getDatasetStore } from '../../../services/dataset-store/index.js';
 import { DEFAULT_ALIAS, getServerRegistry } from '../../../services/server-registry/index.js';
-import { AliasInput, applyDialectFilters, asString, asStringArray, buildRefinementHint, checkFilterMatchRates, collectPassthroughParts, computeDistribution, DatasetHandleSchema, ExtraFiltersInput, fkMatchCheck, LoadLimitInput, loadInitialFindPage, maybeSpill, mergeFilters, renderAppliedFilters, renderDatasetHandle, renderDistributions, renderFindHeader, resolveFindRoute, } from '../shared/find-helpers.js';
+import { AliasInput, applyDialectFiltersOrFail, asString, asStringArray, buildRefinementHint, checkFilterMatchRates, collectPassthroughParts, computeDistribution, DatasetHandleSchema, ExtraFiltersInput, fkMatchCheck, LoadLimitInput, loadInitialFindPage, maybeSpill, mergeFilters, renderAppliedFilters, renderDatasetHandle, renderDistributions, renderFindHeader, resolveFindRoute, } from '../shared/find-helpers.js';
 const StudyRowSchema = z
     .object({
     studyDbId: z.string().describe('Server-side identifier for the study.'),
@@ -105,6 +106,14 @@ const SERVER_TO_USER = {
 export const brapiFindStudies = tool('brapi_find_studies', {
     description: 'Locate studies matching crop, trial type, season, location, or program. Results are enriched with program/trial/location context in one call. Returns a dataset handle when the upstream total exceeds loadLimit.',
     annotations: { readOnlyHint: true, openWorldHint: true },
+    errors: [
+        {
+            reason: 'all_filters_dropped',
+            code: JsonRpcErrorCode.ValidationError,
+            when: 'The active dialect dropped every filter the agent supplied — the upstream server does not honor any of the requested scope filters on this endpoint, so the call would silently widen to the unfiltered baseline.',
+            recovery: 'Drop the unsupported filters and rescope by crop, trialTypes, seasons, programs, trials, studyNames, or active — these filter paths are honored on the active dialect.',
+        },
+    ],
     input: z.object({
         alias: AliasInput,
         crop: z.string().optional().describe('Filter by common crop name (single value).'),
@@ -145,7 +154,7 @@ export const brapiFindStudies = tool('brapi_find_studies', {
             studyNames: input.studyNames,
             active: input.active,
         }, input.extraFilters, warnings);
-        const filters = applyDialectFilters(dialect, 'studies', merged, warnings);
+        const filters = applyDialectFiltersOrFail(ctx, dialect, 'studies', merged, warnings);
         const route = resolveFindRoute({
             profile,
             dialect,

package/dist/mcp-server/tools/definitions/brapi-find-studies.tool.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/mcp-server/tools/definitions/brapi-find-variables.tool.d.ts CHANGED Viewed

@@ -8,6 +8,7 @@
  * @module mcp-server/tools/definitions/brapi-find-variables.tool
  */
 import { z } from '@cyanheads/mcp-ts-core';
+import { JsonRpcErrorCode } from '@cyanheads/mcp-ts-core/errors';
 export declare const brapiFindVariables: import("@cyanheads/mcp-ts-core").ToolDefinition<z.ZodObject<{
     alias: z.ZodOptional<z.ZodString>;
     variables: z.ZodOptional<z.ZodArray<z.ZodString>>;
@@ -83,5 +84,10 @@ export declare const brapiFindVariables: import("@cyanheads/mcp-ts-core").ToolDe
     }, z.core.$strip>>;
     warnings: z.ZodArray<z.ZodString>;
     appliedFilters: z.ZodRecord<z.ZodString, z.ZodUnknown>;
-}, z.core.$strip>, undefined>;
+}, z.core.$strip>, readonly [{
+    readonly reason: "all_filters_dropped";
+    readonly code: JsonRpcErrorCode.ValidationError;
+    readonly when: "The active dialect dropped every filter the agent supplied — the upstream server does not honor any of the requested scope filters on this endpoint, so the call would silently widen to the unfiltered baseline.";
+    readonly recovery: "Drop the unsupported filters and rescope by variables, traitClasses, ontologyDbIds, methodDbIds, scaleDbIds, or text — these filter paths are honored on the active dialect.";
+}]>;
 //# sourceMappingURL=brapi-find-variables.tool.d.ts.map

package/dist/mcp-server/tools/definitions/brapi-find-variables.tool.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"brapi-find-variables.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-find-variables.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;~~AAiLjD~~,eAAO,MAAM,kBAAkB~~;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;6BAuR7B~~,CAAC"}
1	+ {"version":3,"file":"brapi-find-variables.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-find-variables.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAiLjE,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAgS7B,CAAC"}

package/dist/mcp-server/tools/definitions/brapi-find-variables.tool.js CHANGED Viewed

@@ -8,6 +8,7 @@
  * @module mcp-server/tools/definitions/brapi-find-variables.tool
  */
 import { tool, z } from '@cyanheads/mcp-ts-core';
+import { JsonRpcErrorCode } from '@cyanheads/mcp-ts-core/errors';
 import { getServerConfig } from '../../../config/server-config.js';
 import { getBrapiClient } from '../../../services/brapi-client/index.js';
 import { resolveDialect } from '../../../services/brapi-dialect/index.js';
@@ -15,7 +16,7 @@ import { getCapabilityRegistry } from '../../../services/capability-registry/ind
 import { getDatasetStore } from '../../../services/dataset-store/index.js';
 import { getOntologyResolver, } from '../../../services/ontology-resolver/index.js';
 import { DEFAULT_ALIAS, getServerRegistry } from '../../../services/server-registry/index.js';
-import { AliasInput, applyDialectFilters, asString, buildRefinementHint, checkFilterMatchRates, collectPassthroughParts, computeDistribution, DatasetHandleSchema, ExtraFiltersInput, LoadLimitInput, loadInitialFindPage, maybeSpill, mergeFilters, renderAppliedFilters, renderDatasetHandle, renderDistributions, renderFindHeader, resolveFindRoute, } from '../shared/find-helpers.js';
+import { AliasInput, applyDialectFiltersOrFail, asString, buildRefinementHint, checkFilterMatchRates, collectPassthroughParts, computeDistribution, DatasetHandleSchema, ExtraFiltersInput, LoadLimitInput, loadInitialFindPage, maybeSpill, mergeFilters, renderAppliedFilters, renderDatasetHandle, renderDistributions, renderFindHeader, resolveFindRoute, } from '../shared/find-helpers.js';
 const VariableRowSchema = z
     .object({
     observationVariableDbId: z
@@ -151,6 +152,14 @@ const SERVER_TO_USER = {
 export const brapiFindVariables = tool('brapi_find_variables', {
     description: 'Find observation variables (traits) by name, trait class, ontology term, or free-text query. Free-text queries are ranked against the returned set and may resolve to ontology URIs when the server advertises them. Returns a dataset handle when the upstream total exceeds loadLimit.',
     annotations: { readOnlyHint: true, openWorldHint: true },
+    errors: [
+        {
+            reason: 'all_filters_dropped',
+            code: JsonRpcErrorCode.ValidationError,
+            when: 'The active dialect dropped every filter the agent supplied — the upstream server does not honor any of the requested scope filters on this endpoint, so the call would silently widen to the unfiltered baseline.',
+            recovery: 'Drop the unsupported filters and rescope by variables, traitClasses, ontologyDbIds, methodDbIds, scaleDbIds, or text — these filter paths are honored on the active dialect.',
+        },
+    ],
     input: z.object({
         alias: AliasInput,
         variables: z.array(z.string()).optional().describe('Filter by observationVariableDbIds.'),
@@ -199,7 +208,7 @@ export const brapiFindVariables = tool('brapi_find_variables', {
             scaleDbIds: input.scales,
             commonCropName: input.crop,
         }, input.extraFilters, warnings);
-        const filters = applyDialectFilters(dialect, 'variables', merged, warnings);
+        const filters = applyDialectFiltersOrFail(ctx, dialect, 'variables', merged, warnings);
         const route = resolveFindRoute({
             profile,
             dialect,

package/dist/mcp-server/tools/definitions/brapi-find-variables.tool.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/mcp-server/tools/definitions/brapi-find-variants.tool.d.ts CHANGED Viewed

@@ -7,6 +7,7 @@
  * @module mcp-server/tools/definitions/brapi-find-variants.tool
  */
 import { z } from '@cyanheads/mcp-ts-core';
+import { JsonRpcErrorCode } from '@cyanheads/mcp-ts-core/errors';
 export declare const brapiFindVariants: import("@cyanheads/mcp-ts-core").ToolDefinition<z.ZodObject<{
     alias: z.ZodOptional<z.ZodString>;
     variantSets: z.ZodOptional<z.ZodArray<z.ZodString>>;
@@ -55,5 +56,10 @@ export declare const brapiFindVariants: import("@cyanheads/mcp-ts-core").ToolDef
     }, z.core.$strip>>;
     warnings: z.ZodArray<z.ZodString>;
     appliedFilters: z.ZodRecord<z.ZodString, z.ZodUnknown>;
-}, z.core.$strip>, undefined>;
+}, z.core.$strip>, readonly [{
+    readonly reason: "all_filters_dropped";
+    readonly code: JsonRpcErrorCode.ValidationError;
+    readonly when: "The active dialect dropped every filter the agent supplied — the upstream server does not honor any of the requested scope filters on this endpoint, so the call would silently widen to the unfiltered baseline.";
+    readonly recovery: "Drop the unsupported filters and rescope by variants, variantSets, references, or referenceName + start/end — these filter paths are honored on the active dialect.";
+}]>;
 //# sourceMappingURL=brapi-find-variants.tool.d.ts.map

package/dist/mcp-server/tools/definitions/brapi-find-variants.tool.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"brapi-find-variants.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-find-variants.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AA+~~HjD~~,eAAO,MAAM,iBAAiB~~;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;6BAyL5B~~,CAAC"}
1	+ {"version":3,"file":"brapi-find-variants.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-find-variants.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AA+HjE,eAAO,MAAM,iBAAiB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAkM5B,CAAC"}

package/dist/mcp-server/tools/definitions/brapi-find-variants.tool.js CHANGED Viewed

@@ -7,13 +7,14 @@
  * @module mcp-server/tools/definitions/brapi-find-variants.tool
  */
 import { tool, z } from '@cyanheads/mcp-ts-core';
+import { JsonRpcErrorCode } from '@cyanheads/mcp-ts-core/errors';
 import { getServerConfig } from '../../../config/server-config.js';
 import { getBrapiClient } from '../../../services/brapi-client/index.js';
 import { resolveDialect } from '../../../services/brapi-dialect/index.js';
 import { getCapabilityRegistry } from '../../../services/capability-registry/index.js';
 import { getDatasetStore } from '../../../services/dataset-store/index.js';
 import { DEFAULT_ALIAS, getServerRegistry } from '../../../services/server-registry/index.js';
-import { AliasInput, applyDialectFilters, asString, buildRefinementHint, collectPassthroughParts, computeDistribution, DatasetHandleSchema, ExtraFiltersInput, LoadLimitInput, loadInitialFindPage, maybeSpill, mergeFilters, renderAppliedFilters, renderDatasetHandle, renderDistributions, renderFindHeader, resolveFindRoute, } from '../shared/find-helpers.js';
+import { AliasInput, applyDialectFiltersOrFail, asString, buildRefinementHint, collectPassthroughParts, computeDistribution, DatasetHandleSchema, ExtraFiltersInput, LoadLimitInput, loadInitialFindPage, maybeSpill, mergeFilters, renderAppliedFilters, renderDatasetHandle, renderDistributions, renderFindHeader, resolveFindRoute, } from '../shared/find-helpers.js';
 const VariantRowSchema = z
     .object({
     variantDbId: z.string().describe('Server-side identifier for the variant.'),
@@ -108,6 +109,14 @@ const SERVER_TO_USER = {
 export const brapiFindVariants = tool('brapi_find_variants', {
     description: 'Find variant records by variant set, reference sequence, or genomic region (start/end, 1-based inclusive / exclusive). Returns a dataset handle when the upstream total exceeds loadLimit.',
     annotations: { readOnlyHint: true, openWorldHint: true },
+    errors: [
+        {
+            reason: 'all_filters_dropped',
+            code: JsonRpcErrorCode.ValidationError,
+            when: 'The active dialect dropped every filter the agent supplied — the upstream server does not honor any of the requested scope filters on this endpoint, so the call would silently widen to the unfiltered baseline.',
+            recovery: 'Drop the unsupported filters and rescope by variants, variantSets, references, or referenceName + start/end — these filter paths are honored on the active dialect.',
+        },
+    ],
     input: z.object({
         alias: AliasInput,
         variantSets: z.array(z.string()).optional().describe('Filter by variantSetDbIds.'),
@@ -144,7 +153,7 @@ export const brapiFindVariants = tool('brapi_find_variants', {
             start: input.start,
             end: input.end,
         }, input.extraFilters, warnings);
-        const filters = applyDialectFilters(dialect, 'variants', merged, warnings);
+        const filters = applyDialectFiltersOrFail(ctx, dialect, 'variants', merged, warnings);
         const route = resolveFindRoute({
             profile,
             dialect,

package/dist/mcp-server/tools/definitions/brapi-find-variants.tool.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/mcp-server/tools/definitions/brapi-get-study.tool.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"brapi-get-study.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-get-study.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;~~AAkIjE~~,eAAO,MAAM,aAAa;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;~~GAmPxB~~,CAAC"}
1	+ {"version":3,"file":"brapi-get-study.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-get-study.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAqIjE,eAAO,MAAM,aAAa;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GA8PxB,CAAC"}

package/dist/mcp-server/tools/definitions/brapi-get-study.tool.js CHANGED Viewed

@@ -8,11 +8,13 @@
  */
 import { tool, z } from '@cyanheads/mcp-ts-core';
 import { JsonRpcErrorCode } from '@cyanheads/mcp-ts-core/errors';
+import { getServerConfig } from '../../../config/server-config.js';
 import { getBrapiClient } from '../../../services/brapi-client/index.js';
+import { resolveDialect } from '../../../services/brapi-dialect/index.js';
 import { getCapabilityRegistry } from '../../../services/capability-registry/index.js';
 import { getReferenceDataCache } from '../../../services/reference-data-cache/index.js';
 import { DEFAULT_ALIAS, getServerRegistry } from '../../../services/server-registry/index.js';
-import { AliasInput, appendPassthroughLines, buildRequestOptions, extractCoordinates, isUpstreamNotFound, } from '../shared/find-helpers.js';
+import { AliasInput, appendPassthroughLines, buildRequestOptions, companionRequestOptions, extractCoordinates, isUpstreamNotFound, } from '../shared/find-helpers.js';
 const StudySchema = z
     .object({
     studyDbId: z.string().describe('Server-side identifier for the study.'),
@@ -134,13 +136,15 @@ export const brapiGetStudy = tool('brapi_get_study', {
         const capabilities = getCapabilityRegistry();
         const client = getBrapiClient();
         const referenceData = getReferenceDataCache();
+        const config = getServerConfig();
         const connection = await registry.get(ctx, input.alias ?? DEFAULT_ALIAS);
         const capabilityLookup = {};
         if (connection.resolvedAuth)
             capabilityLookup.auth = connection.resolvedAuth;
         await capabilities.ensure(connection.baseUrl, { service: 'studies', method: 'GET' }, ctx, capabilityLookup);
+        const dialect = await resolveDialect(connection, ctx, capabilityLookup);
         const warnings = [];
-        const referenceLookup = {};
+        const referenceLookup = { dialect, warnings };
         if (connection.resolvedAuth)
             referenceLookup.auth = connection.resolvedAuth;
         let studyEnv;
@@ -189,19 +193,23 @@ export const brapiGetStudy = tool('brapi_get_study', {
                     .catch((err) => recordWarning(warnings, 'location FK lookup failed', err))
                 : Promise.resolve(undefined),
             supportsObservations
-                ? fetchTotalCount(client, connection.baseUrl, '/observations', ctx, buildRequestOptions(connection, {
+                ? fetchTotalCount(client, connection.baseUrl, '/observations', ctx, companionRequestOptions(connection, dialect, config, warnings, {
                     studyDbIds: [input.studyDbId],
                     pageSize: 1,
                 })).catch((err) => recordWarning(warnings, 'observation count probe failed', err))
                 : Promise.resolve(undefined),
             supportsObservationUnits
-                ? fetchTotalCount(client, connection.baseUrl, '/observationunits', ctx, buildRequestOptions(connection, {
+                ? fetchTotalCount(client, connection.baseUrl, '/observationunits', ctx, companionRequestOptions(connection, dialect, config, warnings, {
                     studyDbIds: [input.studyDbId],
                     pageSize: 1,
                 })).catch((err) => recordWarning(warnings, 'observation-unit count probe failed', err))
                 : Promise.resolve(undefined),
             supportsVariables
-                ? fetchTotalCount(client, connection.baseUrl, '/variables', ctx, buildRequestOptions(connection, {
+                ? fetchTotalCount(client, connection.baseUrl, '/variables', ctx, companionRequestOptions(connection, dialect, config, warnings, {
+                    // /variables historically responded to singular `studyDbId` on
+                    // SGN deployments — keep the singular here so the dialect (which
+                    // doesn't carry a `variables.studyDbIds → studyDbId` entry) is a
+                    // pass-through, not a silent translation that breaks the probe.
                     studyDbId: input.studyDbId,
                     pageSize: 1,
                 })).catch((err) => recordWarning(warnings, 'variable count probe failed', err))