@cyanheads/brapi-mcp-server 0.4.3 → 0.4.5

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (88) hide show
  1. package/CLAUDE.md +4 -4
  2. package/README.md +12 -3
  3. package/changelog/0.4.x/0.4.4.md +22 -0
  4. package/changelog/0.4.x/0.4.5.md +25 -0
  5. package/dist/mcp-server/tools/definitions/brapi-connect.tool.d.ts +1 -0
  6. package/dist/mcp-server/tools/definitions/brapi-connect.tool.d.ts.map +1 -1
  7. package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.d.ts.map +1 -1
  8. package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.js +14 -3
  9. package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.js.map +1 -1
  10. package/dist/mcp-server/tools/definitions/brapi-find-germplasm.tool.d.ts.map +1 -1
  11. package/dist/mcp-server/tools/definitions/brapi-find-germplasm.tool.js +34 -5
  12. package/dist/mcp-server/tools/definitions/brapi-find-germplasm.tool.js.map +1 -1
  13. package/dist/mcp-server/tools/definitions/brapi-find-images.tool.d.ts.map +1 -1
  14. package/dist/mcp-server/tools/definitions/brapi-find-images.tool.js +33 -4
  15. package/dist/mcp-server/tools/definitions/brapi-find-images.tool.js.map +1 -1
  16. package/dist/mcp-server/tools/definitions/brapi-find-locations.tool.d.ts.map +1 -1
  17. package/dist/mcp-server/tools/definitions/brapi-find-locations.tool.js +30 -4
  18. package/dist/mcp-server/tools/definitions/brapi-find-locations.tool.js.map +1 -1
  19. package/dist/mcp-server/tools/definitions/brapi-find-observations.tool.d.ts.map +1 -1
  20. package/dist/mcp-server/tools/definitions/brapi-find-observations.tool.js +31 -4
  21. package/dist/mcp-server/tools/definitions/brapi-find-observations.tool.js.map +1 -1
  22. package/dist/mcp-server/tools/definitions/brapi-find-studies.tool.d.ts.map +1 -1
  23. package/dist/mcp-server/tools/definitions/brapi-find-studies.tool.js +33 -4
  24. package/dist/mcp-server/tools/definitions/brapi-find-studies.tool.js.map +1 -1
  25. package/dist/mcp-server/tools/definitions/brapi-find-variables.tool.d.ts.map +1 -1
  26. package/dist/mcp-server/tools/definitions/brapi-find-variables.tool.js +30 -24
  27. package/dist/mcp-server/tools/definitions/brapi-find-variables.tool.js.map +1 -1
  28. package/dist/mcp-server/tools/definitions/brapi-find-variants.tool.d.ts.map +1 -1
  29. package/dist/mcp-server/tools/definitions/brapi-find-variants.tool.js +29 -4
  30. package/dist/mcp-server/tools/definitions/brapi-find-variants.tool.js.map +1 -1
  31. package/dist/mcp-server/tools/definitions/brapi-get-germplasm.tool.d.ts.map +1 -1
  32. package/dist/mcp-server/tools/definitions/brapi-get-germplasm.tool.js +31 -2
  33. package/dist/mcp-server/tools/definitions/brapi-get-germplasm.tool.js.map +1 -1
  34. package/dist/mcp-server/tools/definitions/brapi-get-image.tool.d.ts.map +1 -1
  35. package/dist/mcp-server/tools/definitions/brapi-get-image.tool.js +18 -1
  36. package/dist/mcp-server/tools/definitions/brapi-get-image.tool.js.map +1 -1
  37. package/dist/mcp-server/tools/definitions/brapi-get-study.tool.d.ts.map +1 -1
  38. package/dist/mcp-server/tools/definitions/brapi-get-study.tool.js +22 -1
  39. package/dist/mcp-server/tools/definitions/brapi-get-study.tool.js.map +1 -1
  40. package/dist/mcp-server/tools/definitions/brapi-server-info.tool.d.ts +1 -0
  41. package/dist/mcp-server/tools/definitions/brapi-server-info.tool.d.ts.map +1 -1
  42. package/dist/mcp-server/tools/definitions/index.d.ts +2 -0
  43. package/dist/mcp-server/tools/definitions/index.d.ts.map +1 -1
  44. package/dist/mcp-server/tools/shared/connect-auth-schema.js +2 -2
  45. package/dist/mcp-server/tools/shared/connect-auth-schema.js.map +1 -1
  46. package/dist/mcp-server/tools/shared/find-helpers.d.ts +49 -0
  47. package/dist/mcp-server/tools/shared/find-helpers.d.ts.map +1 -1
  48. package/dist/mcp-server/tools/shared/find-helpers.js +113 -12
  49. package/dist/mcp-server/tools/shared/find-helpers.js.map +1 -1
  50. package/dist/mcp-server/tools/shared/orientation-envelope.d.ts +2 -0
  51. package/dist/mcp-server/tools/shared/orientation-envelope.d.ts.map +1 -1
  52. package/dist/mcp-server/tools/shared/orientation-envelope.js +11 -0
  53. package/dist/mcp-server/tools/shared/orientation-envelope.js.map +1 -1
  54. package/dist/services/brapi-client/brapi-client.d.ts.map +1 -1
  55. package/dist/services/brapi-client/brapi-client.js +1 -1
  56. package/dist/services/brapi-client/brapi-client.js.map +1 -1
  57. package/dist/services/brapi-dialect/brapi-test-dialect.d.ts +13 -0
  58. package/dist/services/brapi-dialect/brapi-test-dialect.d.ts.map +1 -0
  59. package/dist/services/brapi-dialect/brapi-test-dialect.js +20 -0
  60. package/dist/services/brapi-dialect/brapi-test-dialect.js.map +1 -0
  61. package/dist/services/brapi-dialect/cassavabase-dialect.d.ts +5 -4
  62. package/dist/services/brapi-dialect/cassavabase-dialect.d.ts.map +1 -1
  63. package/dist/services/brapi-dialect/cassavabase-dialect.js +44 -36
  64. package/dist/services/brapi-dialect/cassavabase-dialect.js.map +1 -1
  65. package/dist/services/brapi-dialect/detect.d.ts +5 -3
  66. package/dist/services/brapi-dialect/detect.d.ts.map +1 -1
  67. package/dist/services/brapi-dialect/detect.js +21 -7
  68. package/dist/services/brapi-dialect/detect.js.map +1 -1
  69. package/dist/services/brapi-dialect/index.d.ts +2 -1
  70. package/dist/services/brapi-dialect/index.d.ts.map +1 -1
  71. package/dist/services/brapi-dialect/index.js +2 -1
  72. package/dist/services/brapi-dialect/index.js.map +1 -1
  73. package/dist/services/brapi-dialect/registry.d.ts.map +1 -1
  74. package/dist/services/brapi-dialect/registry.js +4 -1
  75. package/dist/services/brapi-dialect/registry.js.map +1 -1
  76. package/dist/services/brapi-dialect/types.d.ts +6 -0
  77. package/dist/services/brapi-dialect/types.d.ts.map +1 -1
  78. package/dist/services/capability-registry/capability-registry.d.ts.map +1 -1
  79. package/dist/services/capability-registry/capability-registry.js +30 -10
  80. package/dist/services/capability-registry/capability-registry.js.map +1 -1
  81. package/dist/services/capability-registry/types.d.ts +6 -0
  82. package/dist/services/capability-registry/types.d.ts.map +1 -1
  83. package/dist/services/server-registry/server-registry.d.ts +1 -0
  84. package/dist/services/server-registry/server-registry.d.ts.map +1 -1
  85. package/dist/services/server-registry/server-registry.js +31 -1
  86. package/dist/services/server-registry/server-registry.js.map +1 -1
  87. package/package.json +4 -4
  88. package/server.json +3 -3
package/dist/mcp-server/tools/definitions/brapi-find-variables.tool.js.map CHANGED
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package/dist/mcp-server/tools/definitions/brapi-find-variants.tool.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"brapi-find-variants.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-find-variants.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AA6HjD,eAAO,MAAM,iBAAiB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;6BAsK5B,CAAC"}
1
+ {"version":3,"file":"brapi-find-variants.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-find-variants.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AA+HjD,eAAO,MAAM,iBAAiB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;6BAyL5B,CAAC"}
package/dist/mcp-server/tools/definitions/brapi-find-variants.tool.js CHANGED
@@ -13,7 +13,7 @@ import { resolveDialect } from '../../../services/brapi-dialect/index.js';
13
13
  import { getCapabilityRegistry } from '../../../services/capability-registry/index.js';
14
14
  import { getDatasetStore } from '../../../services/dataset-store/index.js';
15
15
  import { DEFAULT_ALIAS, getServerRegistry } from '../../../services/server-registry/index.js';
16
- import { AliasInput, applyDialectFilters, asString, buildRefinementHint, computeDistribution, DatasetHandleSchema, ExtraFiltersInput, LoadLimitInput, loadInitialPage, maybeSpill, mergeFilters, renderAppliedFilters, renderDatasetHandle, renderDistributions, renderFindHeader, } from '../shared/find-helpers.js';
16
+ import { AliasInput, applyDialectFilters, asString, buildRefinementHint, collectPassthroughParts, computeDistribution, DatasetHandleSchema, ExtraFiltersInput, LoadLimitInput, loadInitialFindPage, maybeSpill, mergeFilters, renderAppliedFilters, renderDatasetHandle, renderDistributions, renderFindHeader, resolveFindRoute, } from '../shared/find-helpers.js';
17
17
  const VariantRowSchema = z
18
18
  .object({
19
19
  variantDbId: z.string().describe('Server-side identifier for the variant.'),
@@ -130,7 +130,7 @@ export const brapiFindVariants = tool('brapi_find_variants', {
130
130
  const capabilityLookup = {};
131
131
  if (connection.resolvedAuth)
132
132
  capabilityLookup.auth = connection.resolvedAuth;
133
- await capabilities.ensure(connection.baseUrl, { service: 'variants', method: 'GET' }, ctx, capabilityLookup);
133
+ const profile = await capabilities.profile(connection.baseUrl, ctx, capabilityLookup);
134
134
  const dialect = await resolveDialect(connection, ctx, capabilityLookup);
135
135
  const warnings = [];
136
136
  if (input.start !== undefined && input.end !== undefined && input.start >= input.end) {
@@ -145,14 +145,23 @@ export const brapiFindVariants = tool('brapi_find_variants', {
145
145
  end: input.end,
146
146
  }, input.extraFilters, warnings);
147
147
  const filters = applyDialectFilters(dialect, 'variants', merged, warnings);
148
+ const route = resolveFindRoute({
149
+ profile,
150
+ dialect,
151
+ endpoint: 'variants',
152
+ filters,
153
+ searchBody: merged,
154
+ warnings,
155
+ });
148
156
  const loadLimit = input.loadLimit ?? config.loadLimit;
149
- const firstPage = await loadInitialPage(client, connection, '/variants', filters, loadLimit, ctx);
157
+ const firstPage = await loadInitialFindPage(client, connection, route, loadLimit, ctx);
150
158
  const { fullRows, dataset: datasetMeta } = await maybeSpill({
151
159
  firstPage,
152
160
  client,
153
161
  connection,
154
162
  path: '/variants',
155
163
  filters,
164
+ route,
156
165
  source: 'find_variants',
157
166
  loadLimit,
158
167
  ctx,
@@ -175,7 +184,7 @@ export const brapiFindVariants = tool('brapi_find_variants', {
175
184
  hasMore: firstPage.hasMore,
176
185
  distributions,
177
186
  warnings,
178
- appliedFilters: filters,
187
+ appliedFilters: route.kind === 'search' ? route.searchBody : filters,
179
188
  };
180
189
  if (refinementHint)
181
190
  result.refinementHint = refinementHint;
@@ -211,6 +220,21 @@ export const brapiFindVariants = tool('brapi_find_variants', {
211
220
  lines.push('_No rows returned._');
212
221
  }
213
222
  else {
223
+ const RENDERED = new Set([
224
+ 'variantNames',
225
+ 'variantDbId',
226
+ 'variantType',
227
+ 'variantSetDbId',
228
+ 'variantSetDbIds',
229
+ 'referenceName',
230
+ 'start',
231
+ 'end',
232
+ 'referenceBases',
233
+ 'alternateBases',
234
+ 'filtersApplied',
235
+ 'filtersPassed',
236
+ 'filtersFailed',
237
+ ]);
214
238
  for (const v of result.results) {
215
239
  const label = v.variantNames?.[0] ?? v.variantDbId;
216
240
  const parts = [`**${label}**`];
@@ -238,6 +262,7 @@ export const brapiFindVariants = tool('brapi_find_variants', {
238
262
  parts.push(`filtersFailed=${v.filtersFailed.join(',')}`);
239
263
  if (v.variantNames?.length)
240
264
  parts.push(`names=${v.variantNames.join(',')}`);
265
+ parts.push(...collectPassthroughParts(v, RENDERED));
241
266
  lines.push(`- ${parts.join(' · ')}`);
242
267
  }
243
268
  }
package/dist/mcp-server/tools/definitions/brapi-find-variants.tool.js.map CHANGED
@@ -1 +1 @@
1
- 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package/dist/mcp-server/tools/definitions/brapi-get-germplasm.tool.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"brapi-get-germplasm.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-get-germplasm.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAmGjE,eAAO,MAAM,iBAAiB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAgN5B,CAAC"}
1
+ {"version":3,"file":"brapi-get-germplasm.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-get-germplasm.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAyGjE,eAAO,MAAM,iBAAiB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GA6O5B,CAAC"}
package/dist/mcp-server/tools/definitions/brapi-get-germplasm.tool.js CHANGED
@@ -12,7 +12,7 @@ import { getBrapiClient } from '../../../services/brapi-client/index.js';
12
12
  import { resolveDialect } from '../../../services/brapi-dialect/index.js';
13
13
  import { getCapabilityRegistry } from '../../../services/capability-registry/index.js';
14
14
  import { DEFAULT_ALIAS, getServerRegistry } from '../../../services/server-registry/index.js';
15
- import { AliasInput, buildRequestOptions, isUpstreamNotFound } from '../shared/find-helpers.js';
15
+ import { AliasInput, appendPassthroughLines, buildRequestOptions, collectPassthroughParts, isUpstreamNotFound, } from '../shared/find-helpers.js';
16
16
  const GermplasmSchema = z
17
17
  .object({
18
18
  germplasmDbId: z.string().describe('Server-side identifier for the germplasm.'),
@@ -190,6 +190,25 @@ export const brapiGetGermplasm = tool('brapi_get_germplasm', {
190
190
  format: (result) => {
191
191
  const lines = [];
192
192
  const g = result.germplasm;
193
+ const GERMPLASM_RENDERED = new Set([
194
+ 'germplasmDbId',
195
+ 'germplasmName',
196
+ 'germplasmPUI',
197
+ 'commonCropName',
198
+ 'accessionNumber',
199
+ 'genus',
200
+ 'species',
201
+ 'subtaxa',
202
+ 'defaultDisplayName',
203
+ 'pedigree',
204
+ 'biologicalStatusOfAccessionDescription',
205
+ 'germplasmOrigin',
206
+ 'countryOfOriginCode',
207
+ 'collection',
208
+ 'instituteCode',
209
+ 'instituteName',
210
+ 'synonyms',
211
+ ]);
193
212
  lines.push(`# ${g.germplasmName ?? g.defaultDisplayName ?? g.germplasmDbId}`);
194
213
  lines.push('');
195
214
  lines.push(`- **germplasmDbId:** \`${g.germplasmDbId}\``);
@@ -214,7 +233,7 @@ export const brapiGetGermplasm = tool('brapi_get_germplasm', {
214
233
  if (g.biologicalStatusOfAccessionDescription)
215
234
  lines.push(`- **biologicalStatus:** ${g.biologicalStatusOfAccessionDescription}`);
216
235
  if (g.germplasmOrigin?.length)
217
- lines.push(`- **germplasmOrigin:** ${g.germplasmOrigin.length} record(s)`);
236
+ lines.push(`- **germplasmOrigin:** ${JSON.stringify(g.germplasmOrigin)}`);
218
237
  if (g.countryOfOriginCode)
219
238
  lines.push(`- **countryOfOriginCode:** ${g.countryOfOriginCode}`);
220
239
  if (g.collection)
@@ -229,6 +248,7 @@ export const brapiGetGermplasm = tool('brapi_get_germplasm', {
229
248
  .join(', ');
230
249
  lines.push(`- **synonyms:** ${synStr}`);
231
250
  }
251
+ appendPassthroughLines(lines, g, GERMPLASM_RENDERED);
232
252
  lines.push(`- **alias:** ${result.alias}`);
233
253
  lines.push('');
234
254
  lines.push(`## Parents (${result.directParentCount})`);
@@ -236,6 +256,7 @@ export const brapiGetGermplasm = tool('brapi_get_germplasm', {
236
256
  lines.push('_No parents recorded._');
237
257
  }
238
258
  else {
259
+ const PARENT_RENDERED = new Set(['germplasmDbId', 'germplasmName', 'parentType']);
239
260
  for (const p of result.parents) {
240
261
  const parts = [];
241
262
  if (p.germplasmName)
@@ -244,6 +265,7 @@ export const brapiGetGermplasm = tool('brapi_get_germplasm', {
244
265
  parts.push(`id=\`${p.germplasmDbId}\``);
245
266
  if (p.parentType)
246
267
  parts.push(`type=${p.parentType}`);
268
+ parts.push(...collectPassthroughParts(p, PARENT_RENDERED));
247
269
  lines.push(`- ${parts.join(' · ')}`);
248
270
  }
249
271
  }
@@ -253,6 +275,12 @@ export const brapiGetGermplasm = tool('brapi_get_germplasm', {
253
275
  lines.push('_No attributes recorded._');
254
276
  }
255
277
  else {
278
+ const ATTR_RENDERED = new Set([
279
+ 'attributeName',
280
+ 'attributeDbId',
281
+ 'attributeValue',
282
+ 'determinedDate',
283
+ ]);
256
284
  for (const a of result.attributes) {
257
285
  const parts = [];
258
286
  if (a.attributeName)
@@ -263,6 +291,7 @@ export const brapiGetGermplasm = tool('brapi_get_germplasm', {
263
291
  parts.push(`= ${a.attributeValue}`);
264
292
  if (a.determinedDate)
265
293
  parts.push(`[determined ${a.determinedDate}]`);
294
+ parts.push(...collectPassthroughParts(a, ATTR_RENDERED));
266
295
  lines.push(`- ${parts.join(' ')}`);
267
296
  }
268
297
  }
package/dist/mcp-server/tools/definitions/brapi-get-germplasm.tool.js.map CHANGED
@@ -1 +1 @@
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package/dist/mcp-server/tools/definitions/brapi-get-image.tool.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"brapi-get-image.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-get-image.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAsEjE,eAAO,MAAM,aAAa;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAwIxB,CAAC"}
1
+ {"version":3,"file":"brapi-get-image.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-get-image.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAsEjE,eAAO,MAAM,aAAa;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAyJxB,CAAC"}
package/dist/mcp-server/tools/definitions/brapi-get-image.tool.js CHANGED
@@ -12,7 +12,7 @@ import { JsonRpcErrorCode } from '@cyanheads/mcp-ts-core/errors';
12
12
  import { getBrapiClient } from '../../../services/brapi-client/index.js';
13
13
  import { getCapabilityRegistry } from '../../../services/capability-registry/index.js';
14
14
  import { DEFAULT_ALIAS, getServerRegistry } from '../../../services/server-registry/index.js';
15
- import { AliasInput, buildRequestOptions } from '../shared/find-helpers.js';
15
+ import { AliasInput, appendPassthroughLines, buildRequestOptions } from '../shared/find-helpers.js';
16
16
  const MAX_IMAGES_PER_CALL = 5;
17
17
  const MAX_IMAGE_BYTES = 20 * 1024 * 1024; // 20 MB
18
18
  const ImageMetadataSchema = z
@@ -139,6 +139,22 @@ export const brapiGetImage = tool('brapi_get_image', {
139
139
  header.push(`⚠ ${result.warnings.length} suspect — see warnings below.`);
140
140
  }
141
141
  blocks.push({ type: 'text', text: header.join('\n') });
142
+ const META_RENDERED = new Set([
143
+ 'imageDbId',
144
+ 'imageName',
145
+ 'imageFileName',
146
+ 'imageWidth',
147
+ 'imageHeight',
148
+ 'mimeType',
149
+ 'imageURL',
150
+ 'observationUnitDbId',
151
+ 'observationUnitName',
152
+ 'studyDbId',
153
+ 'studyName',
154
+ 'imageTimeStamp',
155
+ 'copyright',
156
+ 'description',
157
+ ]);
142
158
  for (const img of result.images) {
143
159
  const meta = img.metadata;
144
160
  const lines = [];
@@ -172,6 +188,7 @@ export const brapiGetImage = tool('brapi_get_image', {
172
188
  lines.push(`- copyright: ${meta.copyright}`);
173
189
  if (meta.description)
174
190
  lines.push(`- description: ${meta.description}`);
191
+ appendPassthroughLines(lines, meta, META_RENDERED);
175
192
  blocks.push({ type: 'text', text: lines.join('\n') });
176
193
  blocks.push({
177
194
  type: 'image',
package/dist/mcp-server/tools/definitions/brapi-get-image.tool.js.map CHANGED
@@ -1 +1 @@
1
- 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package/dist/mcp-server/tools/definitions/brapi-get-study.tool.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"brapi-get-study.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-get-study.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAiIjE,eAAO,MAAM,aAAa;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GA+NxB,CAAC"}
1
+ {"version":3,"file":"brapi-get-study.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-get-study.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAkIjE,eAAO,MAAM,aAAa;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAmPxB,CAAC"}
package/dist/mcp-server/tools/definitions/brapi-get-study.tool.js CHANGED
@@ -12,7 +12,7 @@ import { getBrapiClient } from '../../../services/brapi-client/index.js';
12
12
  import { getCapabilityRegistry } from '../../../services/capability-registry/index.js';
13
13
  import { getReferenceDataCache } from '../../../services/reference-data-cache/index.js';
14
14
  import { DEFAULT_ALIAS, getServerRegistry } from '../../../services/server-registry/index.js';
15
- import { AliasInput, buildRequestOptions, extractCoordinates, isUpstreamNotFound, } from '../shared/find-helpers.js';
15
+ import { AliasInput, appendPassthroughLines, buildRequestOptions, extractCoordinates, isUpstreamNotFound, } from '../shared/find-helpers.js';
16
16
  const StudySchema = z
17
17
  .object({
18
18
  studyDbId: z.string().describe('Server-side identifier for the study.'),
@@ -238,6 +238,25 @@ export const brapiGetStudy = tool('brapi_get_study', {
238
238
  format: (result) => {
239
239
  const lines = [];
240
240
  const study = result.study;
241
+ const STUDY_RENDERED = new Set([
242
+ 'studyDbId',
243
+ 'studyName',
244
+ 'studyType',
245
+ 'studyDescription',
246
+ 'programDbId',
247
+ 'programName',
248
+ 'trialDbId',
249
+ 'trialName',
250
+ 'locationDbId',
251
+ 'locationName',
252
+ 'commonCropName',
253
+ 'seasons',
254
+ 'active',
255
+ 'startDate',
256
+ 'endDate',
257
+ 'studyCode',
258
+ 'studyPUI',
259
+ ]);
241
260
  lines.push(`# ${study.studyName ?? study.studyDbId}`);
242
261
  lines.push('');
243
262
  lines.push(`- **studyDbId:** \`${study.studyDbId}\``);
@@ -273,6 +292,7 @@ export const brapiGetStudy = tool('brapi_get_study', {
273
292
  lines.push(`- **studyCode:** ${study.studyCode}`);
274
293
  if (study.studyPUI)
275
294
  lines.push(`- **studyPUI:** ${study.studyPUI}`);
295
+ appendPassthroughLines(lines, study, STUDY_RENDERED);
276
296
  lines.push(`- **alias:** ${result.alias}`);
277
297
  if (result.program) {
278
298
  lines.push('');
@@ -333,6 +353,7 @@ function renderKeyValues(lines, record) {
333
353
  lines.push(`- **${key}:** ${value.join(', ')}`);
334
354
  }
335
355
  else if (typeof value === 'object') {
356
+ lines.push(`- **${key}:** ${JSON.stringify(value)}`);
336
357
  }
337
358
  else {
338
359
  lines.push(`- **${key}:** ${value}`);
package/dist/mcp-server/tools/definitions/brapi-get-study.tool.js.map CHANGED
@@ -1 +1 @@
1
- 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