npm - @cyanheads/brapi-mcp-server - Versions diffs - 0.4.12 → 0.4.14 - Mend

@cyanheads/brapi-mcp-server 0.4.12 → 0.4.14

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (28) hide show

package/dist/mcp-server/tools/definitions/brapi-get-germplasm.tool.js.map CHANGED Viewed

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package/dist/mcp-server/tools/shared/find-helpers.d.ts CHANGED Viewed

@@ -153,6 +153,14 @@ export interface SpillInput<T> {
      * headers can still report the true upstream size.
      */
     rowFilter?: (row: T) => boolean;
+    /**
+     * Optional client-side transform applied to every row (first-page + spilled)
+     * before any predicate filter runs. Used to normalize sparse / duplicated
+     * upstream payloads (e.g. dedup'ing CassavaBase's 11×-repeated synonym
+     * arrays) so the in-context view, the persisted dataset, and the canvas
+     * dataframe all see the same cleaned shape. Runs before `rowFilter`.
+     */
+    rowMapper?: (row: T) => T;
     source: string;
     store: DatasetStore;
     /** Total reported by the server on the first page. */
@@ -211,6 +219,11 @@ export interface MaybeSpillInput<T> {
      * first-page rows are also filtered before being returned.
      */
     rowFilter?: (row: T) => boolean;
+    /**
+     * Optional client-side transform applied to every row (first-page + spilled)
+     * before persistence and before any `rowFilter`. See {@link SpillInput.rowMapper}.
+     */
+    rowMapper?: (row: T) => T;
     source: string;
     /**
      * Optional request overrides for spillover page pulls. Useful when a tool
@@ -248,6 +261,22 @@ export interface BrapiListResult<T> {
 export declare function extractRows<T>(result: BrapiListResult<T> | T[]): T[];
 /** Return the input as a non-empty string, or undefined. Used in distribution accessors. */
 export declare function asString(value: unknown): string | undefined;
+/**
+ * Drop entries from a `synonyms` array that are structurally identical to an
+ * entry already kept. Some Breedbase deployments (notably CassavaBase) return
+ * each registered synonym repeated 11× per germplasm record — the bloat is
+ * purely upstream and carries no information beyond the unique set.
+ *
+ * Identity is taken via a stable serialization (keys sorted recursively) so
+ * that two entries with the same fields but different property insertion
+ * order are recognized as duplicates — observed live: CassavaBase emits two
+ * key orderings on the same record. Two entries that genuinely differ on
+ * any field (e.g. same `synonym` text but different `type`) still hash to
+ * distinct keys and are both kept. When no duplicates are present the
+ * input row is returned by reference — the helper is allocation-free on
+ * the common case.
+ */
+export declare function dedupSynonymsByIdentity<T extends Record<string, unknown>>(row: T): T;
 /** Return the input as a non-empty string array, or undefined. */
 export declare function asStringArray(value: unknown): string[] | undefined;
 /**

package/dist/mcp-server/tools/shared/find-helpers.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ {"version":3,"file":"find-helpers.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/shared/find-helpers.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,OAAO,EAAE,KAAK,OAAO,EAAE,KAAK,cAAc,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAE9E,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,2BAA2B,CAAC;AAC9D,OAAO,KAAK,EACV,WAAW,EACX,aAAa,EACb,eAAe,EACf,mBAAmB,EACnB,YAAY,EACb,MAAM,kCAAkC,CAAC;AAC1C,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,mCAAmC,CAAC;AACtE,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,yCAAyC,CAAC;AACjF,OAAO,KAAK,EAEV,eAAe,EACf,YAAY,EACb,MAAM,mCAAmC,CAAC;AAC3C,OAAO,KAAK,EAAE,gBAAgB,EAAE,MAAM,qCAAqC,CAAC;AAE5E,kFAAkF;AAClF,wBAAgB,kBAAkB,CAAC,GAAG,EAAE,OAAO,GAAG,OAAO,CAExD;AAED,iFAAiF;AACjF,eAAO,MAAM,kBAAkB,QAAS,CAAC;AAEzC,+EAA+E;AAC/E,eAAO,MAAM,mBAAmB,KAAK,CAAC;AAEtC,eAAO,MAAM,UAAU,4BAI0E,CAAC;AAElG,eAAO,MAAM,cAAc,4BAOxB,CAAC;AAEJ,eAAO,MAAM,iBAAiB,uDAK3B,CAAC;AAEJ;;;GAGG;AACH,wBAAgB,YAAY,CAC1B,KAAK,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,EAC9B,KAAK,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GAAG,SAAS,EAC1C,QAAQ,EAAE,MAAM,EAAE,GACjB,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAiBzB;AAED;;;;;;;;;GASG;AACH,wBAAgB,yBAAyB,CACvC,GAAG,EAAE,cAAc,CAAC,qBAAqB,CAAC,EAC1C,OAAO,EAAE,YAAY,EACrB,QAAQ,EAAE,MAAM,EAChB,OAAO,EAAE,QAAQ,CAAC,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC,EAC1C,QAAQ,EAAE,MAAM,EAAE,GACjB,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAezB;AAED,MAAM,MAAM,SAAS,GACjB;IACE,OAAO,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;IACjC,IAAI,EAAE,KAAK,CAAC;IACZ,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,MAAM,CAAC;CACjB,GACD;IACE,IAAI,EAAE,QAAQ,CAAC;IACf,IAAI,EAAE,MAAM,CAAC;IACb,UAAU,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;IACpC,OAAO,EAAE,MAAM,CAAC;CACjB,CAAC;AAEN,MAAM,WAAW,qBAAqB;IACpC,OAAO,EAAE,YAAY,CAAC;IACtB,QAAQ,EAAE,MAAM,CAAC;IACjB,OAAO,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;IACjC,OAAO,EAAE,iBAAiB,CAAC;IAC3B,UAAU,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;IACpC,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,QAAQ,EAAE,MAAM,EAAE,CAAC;CACpB;AAED;;;;;;GAMG;AACH,wBAAgB,gBAAgB,CAAC,KAAK,EAAE,qBAAqB,GAAG,SAAS,CAgDxE;AA6BD,gDAAgD;AAChD,wBAAgB,mBAAmB,CACjC,UAAU,EAAE,gBAAgB,EAC5B,MAAM,CAAC,EAAE,mBAAmB,CAAC,QAAQ,CAAC,EACtC,SAAS,GAAE,mBAAwB,GAClC,mBAAmB,CAKrB;AAED;;;;;;;;;;;GAWG;AACH,wBAAgB,uBAAuB,CACrC,UAAU,EAAE,gBAAgB,EAC5B,OAAO,EAAE,YAAY,EACrB,MAAM,EAAE,YAAY,EACpB,QAAQ,EAAE,MAAM,EAAE,EAClB,MAAM,CAAC,EAAE,mBAAmB,CAAC,QAAQ,CAAC,GACrC,mBAAmB,CAUrB;AAED;;;;GAIG;AACH,wBAAgB,mBAAmB,CAAC,CAAC,EACnC,IAAI,EAAE,SAAS,CAAC,EAAE,EAClB,QAAQ,EAAE,CAAC,GAAG,EAAE,CAAC,KAAK,MAAM,GAAG,SAAS,MAAM,EAAE,GAAG,SAAS,GAAG,IAAI,GAClE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAYxB;AAED;;;;;;GAMG;AACH,wBAAgB,gBAAgB,CAAC,IAAI,EAAE;IACrC,IAAI,EAAE,MAAM,CAAC;IACb,KAAK,EAAE,MAAM,CAAC;IACd,aAAa,EAAE,MAAM,CAAC;IACtB,UAAU,EAAE,MAAM,CAAC;IACnB,OAAO,CAAC,EAAE;QAAE,QAAQ,EAAE,MAAM,CAAC;QAAC,SAAS,CAAC,EAAE,MAAM,CAAA;KAAE,GAAG,SAAS,CAAC;CAChE,GAAG,MAAM,CAMT;AAED;;;;;GAKG;AACH,wBAAgB,oBAAoB,CAClC,OAAO,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,EAChC,YAAY,GAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAM,GACxC,MAAM,CAUR;AAED,iEAAiE;AACjE,wBAAgB,mBAAmB,CAAC,aAAa,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC,GAAG,MAAM,CAajG;AAED,MAAM,WAAW,UAAU,CAAC,CAAC;IAC3B,iEAAiE;IACjE,OAAO,EAAE,OAAO,CAAC;IACjB,sDAAsD;IACtD,YAAY,EAAE,MAAM,CAAC;IACrB,IAAI,EAAE,CAAC,EAAE,CAAC;IACV,8EAA8E;IAC9E,UAAU,CAAC,EAAE,MAAM,CAAC;CACrB;AAED;;;;GAIG;AACH,wBAAsB,eAAe,CAAC,CAAC,EACrC,MAAM,EAAE,WAAW,EACnB,UAAU,EAAE,gBAAgB,EAC5B,IAAI,EAAE,MAAM,EACZ,OAAO,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,EAChC,SAAS,EAAE,MAAM,EACjB,GAAG,EAAE,OAAO,GACX,OAAO,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC,CAQxB;AAED,gFAAgF;AAChF,wBAAsB,mBAAmB,CAAC,CAAC,EACzC,MAAM,EAAE,WAAW,EACnB,UAAU,EAAE,gBAAgB,EAC5B,KAAK,EAAE,SAAS,EAChB,SAAS,EAAE,MAAM,EACjB,GAAG,EAAE,OAAO,GACX,OAAO,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC,CASxB;AA8CD,MAAM,WAAW,UAAU,CAAC,CAAC;IAC3B,MAAM,EAAE,WAAW,CAAC;IACpB,UAAU,EAAE,gBAAgB,CAAC;IAC7B,GAAG,EAAE,OAAO,CAAC;IACb,OAAO,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;IACjC,yDAAyD;IACzD,SAAS,EAAE,CAAC,EAAE,CAAC;IACf,SAAS,EAAE,MAAM,CAAC;IAClB,2DAA2D;IAC3D,kBAAkB,CAAC,EAAE,mBAAmB,CAAC;IACzC,IAAI,EAAE,MAAM,CAAC;IACb,mFAAmF;IACnF,KAAK,CAAC,EAAE,SAAS,CAAC;IAClB;;;;;;OAMG;IACH,SAAS,CAAC,EAAE,CAAC,GAAG,EAAE,CAAC,KAAK,OAAO,CAAC;IAChC;;;;;;OAMG;IACH,SAAS,CAAC,EAAE,CAAC,GAAG,EAAE,CAAC,KAAK,CAAC,CAAC;IAC1B,MAAM,EAAE,MAAM,CAAC;IACf,KAAK,EAAE,YAAY,CAAC;IACpB,sDAAsD;IACtD,UAAU,EAAE,MAAM,CAAC;CACpB;AAED,MAAM,WAAW,WAAW,CAAC,CAAC;IAC5B,OAAO,EAAE,eAAe,CAAC;IACzB,4EAA4E;IAC5E,QAAQ,EAAE,CAAC,EAAE,CAAC;IACd,YAAY,EAAE,MAAM,CAAC;CACtB;AAED;;;;GAIG;AACH,eAAO,MAAM,mBAAmB;;;;;;;;;;iBAyB9B,CAAC;AAEH,MAAM,MAAM,aAAa,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,mBAAmB,CAAC,CAAC;AAEhE;;;;;GAKG;AACH,wBAAgB,mBAAmB,CAAC,MAAM,EAAE,aAAa,GAAG,MAAM,EAAE,CAenE;AAED;;;;GAIG;AACH,wBAAgB,eAAe,CAAC,SAAS,EAAE,MAAM,EAAE,GAAG,GAAE,IAAiB,GAAG,MAAM,CAcjF;AAED,kEAAkE;AAClE,wBAAgB,eAAe,CAAC,QAAQ,EAAE,eAAe,GAAG,aAAa,CAaxE;AAED,MAAM,WAAW,eAAe,CAAC,CAAC;IAChC,MAAM,EAAE,WAAW,CAAC;IACpB,UAAU,EAAE,gBAAgB,CAAC;IAC7B,GAAG,EAAE,OAAO,CAAC;IACb,OAAO,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;IACjC,SAAS,EAAE,UAAU,CAAC,CAAC,CAAC,CAAC;IACzB,SAAS,EAAE,MAAM,CAAC;IAClB,IAAI,EAAE,MAAM,CAAC;IACb,KAAK,CAAC,EAAE,SAAS,CAAC;IA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package/dist/mcp-server/tools/shared/find-helpers.js CHANGED Viewed

@@ -385,12 +385,11 @@ export function toDatasetHandle(metadata) {
  * union to DatasetStore and returns both the full set and the handle.
  */
 export async function maybeSpill(input) {
-    const { firstPage, rowFilter } = input;
+    const { firstPage, rowMapper, rowFilter } = input;
     if (!firstPage.hasMore ||
         firstPage.totalCount === undefined ||
         firstPage.totalCount <= input.loadLimit) {
-        const rows = rowFilter ? firstPage.rows.filter(rowFilter) : firstPage.rows;
-        return { fullRows: rows };
+        return { fullRows: applyRowTransforms(firstPage.rows, rowMapper, rowFilter) };
     }
     const spillInput = {
         store: input.store,
@@ -404,6 +403,8 @@ export async function maybeSpill(input) {
         firstPage: firstPage.rows,
         totalCount: firstPage.totalCount,
     };
+    if (rowMapper)
+        spillInput.rowMapper = rowMapper;
     if (rowFilter)
         spillInput.rowFilter = rowFilter;
     if (input.route)
@@ -421,10 +422,19 @@ export async function maybeSpill(input) {
         if (!input.warnings || !(err instanceof SpillPageFetchError))
             throw err;
         input.warnings.push(`Dataset spillover skipped after returning the first ${firstPage.rows.length} row(s): ${formatSpillError(err)}. Narrow filters, raise loadLimit enough to fit the result in one page, or retry when the upstream server is responsive.`);
-        const rows = rowFilter ? firstPage.rows.filter(rowFilter) : firstPage.rows;
-        return { fullRows: rows };
+        return { fullRows: applyRowTransforms(firstPage.rows, rowMapper, rowFilter) };
     }
 }
+/**
+ * Apply mapper before filter on a row set. Centralizes the order constraint
+ * across the three spillover sites — early-exit, error fallback, and persist
+ * — so they can't drift apart and accidentally filter raw rows the spilled
+ * dataset has already normalized.
+ */
+function applyRowTransforms(rows, mapper, filter) {
+    const mapped = mapper ? rows.map(mapper) : rows;
+    return filter ? mapped.filter(filter) : mapped;
+}
 /**
  * Pull every remaining page up to MAX_SPILLOVER_* caps, then persist the
  * union to DatasetStore. Returns the dataset metadata plus the full row set
@@ -459,7 +469,7 @@ export async function spillToDataset(input) {
     const reachedRowCap = rows.length >= remainingTarget && input.totalCount > rows.length;
     const reachedPageCap = pagesFetched >= MAX_SPILLOVER_PAGES && input.totalCount > rows.length;
     const truncated = reachedRowCap || reachedPageCap;
-    const persistedRows = input.rowFilter ? rows.filter(input.rowFilter) : rows;
+    const persistedRows = applyRowTransforms(rows, input.rowMapper, input.rowFilter);
     const createInput = {
         source: input.source,
         baseUrl: input.connection.baseUrl,
@@ -468,7 +478,25 @@ export async function spillToDataset(input) {
     };
     if (truncated) {
         createInput.truncated = true;
-        createInput.maxRows = MAX_SPILLOVER_ROWS;
+        // `maxRows` only carries meaning when the row cap fired — it's the upper
+        // bound the spillover honored. When the page cap fired first (small
+        // `loadLimit` × `MAX_SPILLOVER_PAGES` < upstream total), reporting
+        // `maxRows = MAX_SPILLOVER_ROWS` is misleading: the dataset stopped at
+        // `loadLimit × MAX_SPILLOVER_PAGES`, well below the row cap. Log the
+        // page-cap event for operators; the agent sees only `truncated: true`
+        // without the false 50k bound and can raise `loadLimit` to push past it.
+        if (reachedRowCap) {
+            createInput.maxRows = MAX_SPILLOVER_ROWS;
+        }
+        else if (reachedPageCap) {
+            input.ctx.log.warning('Spillover hit page cap before exhausting upstream', {
+                source: input.source,
+                pagesFetched,
+                maxPages: MAX_SPILLOVER_PAGES,
+                rowsFetched: rows.length,
+                totalCount: input.totalCount,
+            });
+        }
     }
     const dataset = await input.store.create(input.ctx, createInput);
     return { dataset, fullRows: persistedRows, pagesFetched };
@@ -502,6 +530,52 @@ export function extractRows(result) {
 export function asString(value) {
     return typeof value === 'string' && value.length > 0 ? value : undefined;
 }
+/**
+ * Drop entries from a `synonyms` array that are structurally identical to an
+ * entry already kept. Some Breedbase deployments (notably CassavaBase) return
+ * each registered synonym repeated 11× per germplasm record — the bloat is
+ * purely upstream and carries no information beyond the unique set.
+ *
+ * Identity is taken via a stable serialization (keys sorted recursively) so
+ * that two entries with the same fields but different property insertion
+ * order are recognized as duplicates — observed live: CassavaBase emits two
+ * key orderings on the same record. Two entries that genuinely differ on
+ * any field (e.g. same `synonym` text but different `type`) still hash to
+ * distinct keys and are both kept. When no duplicates are present the
+ * input row is returned by reference — the helper is allocation-free on
+ * the common case.
+ */
+export function dedupSynonymsByIdentity(row) {
+    if (!Array.isArray(row.synonyms))
+        return row;
+    const seen = new Set();
+    const out = [];
+    for (const entry of row.synonyms) {
+        const key = stableStringify(entry);
+        if (seen.has(key))
+            continue;
+        seen.add(key);
+        out.push(entry);
+    }
+    if (out.length === row.synonyms.length)
+        return row;
+    return { ...row, synonyms: out };
+}
+/**
+ * Order-invariant `JSON.stringify` for structural identity hashing. Sorts
+ * object keys recursively so insertion order doesn't affect the output.
+ * Arrays preserve element order — order is semantically meaningful there.
+ */
+function stableStringify(value) {
+    if (value === null || typeof value !== 'object')
+        return JSON.stringify(value);
+    if (Array.isArray(value)) {
+        return `[${value.map(stableStringify).join(',')}]`;
+    }
+    const obj = value;
+    const keys = Object.keys(obj).sort();
+    return `{${keys.map((k) => `${JSON.stringify(k)}:${stableStringify(obj[k])}`).join(',')}}`;
+}
 /** Return the input as a non-empty string array, or undefined. */
 export function asStringArray(value) {
     if (!Array.isArray(value))

package/dist/mcp-server/tools/shared/find-helpers.js.map CHANGED Viewed

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package/dist/services/canvas-bridge/canvas-bridge.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/services/canvas-bridge/canvas-bridge.js CHANGED Viewed

@@ -92,7 +92,16 @@ export class CanvasBridge {
         const tableName = datasetTableName(metadata.datasetId);
         try {
             const instance = await this.getInstance(ctx);
-            await instance.registerTable(tableName, rows);
+            // Pre-compute an explicit all-nullable schema. The framework's default
+            // path sniffs the first N rows and infers `nullable: false` for any
+            // column that happened to be non-null in the sample — DuckDB then
+            // creates the table with NOT NULL constraints, and the appender rolls
+            // back the entire batch the first time a later row carries a null for
+            // that column. Sniffed schemas can never prove non-nullability from a
+            // sample, so we walk every row, classify types ourselves, and emit
+            // `nullable: true` for every column.
+            const schema = deriveAllNullableSchema(rows);
+            await instance.registerTable(tableName, rows, { schema });
             const tableMeta = {
                 datasetId: metadata.datasetId,
                 source: metadata.source,
@@ -238,6 +247,83 @@ function tableMetaKey(tableName) {
 function isCanvasNotFound(err) {
     return err instanceof McpError && err.code === JsonRpcErrorCode.NotFound;
 }
+/**
+ * Walk every row, union the JS-side types per column, and emit a
+ * `ColumnSchema[]` with `nullable: true` on every column. Mirrors the
+ * framework's sniffer type classification (string/integer/double/bigint/
+ * boolean/object) so the inferred DuckDB types stay identical, but never
+ * emits NOT NULL constraints — sample-based sniffing cannot prove the
+ * absence of nulls, and a wrong NOT NULL inference rolls back the entire
+ * appender batch when the first violating row appears later.
+ *
+ * Walks the full row set rather than a sample so that columns appearing
+ * only in late rows still show up in the schema. We already hold every
+ * row in memory at this point (the spillover persisted them), so the
+ * extra pass is cheap.
+ */
+function deriveAllNullableSchema(rows) {
+    const observedByCol = new Map();
+    const columnOrder = [];
+    for (const row of rows) {
+        for (const key of Object.keys(row)) {
+            let bag = observedByCol.get(key);
+            if (!bag) {
+                bag = new Set();
+                observedByCol.set(key, bag);
+                columnOrder.push(key);
+            }
+            bag.add(classifyValue(row[key]));
+        }
+    }
+    return columnOrder.map((name) => ({
+        name,
+        type: unionToColumnType(observedByCol.get(name) ?? new Set(['null'])),
+        nullable: true,
+    }));
+}
+function classifyValue(value) {
+    if (value === null || value === undefined)
+        return 'null';
+    if (typeof value === 'string')
+        return 'string';
+    if (typeof value === 'boolean')
+        return 'boolean';
+    if (typeof value === 'bigint')
+        return 'bigint';
+    if (typeof value === 'number')
+        return Number.isInteger(value) ? 'integer' : 'double';
+    return 'object';
+}
+function unionToColumnType(observed) {
+    const nonNull = new Set(observed);
+    nonNull.delete('null');
+    if (nonNull.size === 0)
+        return 'VARCHAR';
+    if (nonNull.size === 1) {
+        const [only] = nonNull;
+        switch (only) {
+            case 'string':
+                return 'VARCHAR';
+            case 'integer':
+            case 'bigint':
+                return 'BIGINT';
+            case 'double':
+                return 'DOUBLE';
+            case 'boolean':
+                return 'BOOLEAN';
+            case 'object':
+                return 'JSON';
+            default:
+                return 'VARCHAR';
+        }
+    }
+    const allNumeric = [...nonNull].every((t) => t === 'integer' || t === 'double' || t === 'bigint');
+    if (allNumeric)
+        return nonNull.has('double') ? 'DOUBLE' : 'BIGINT';
+    if (!nonNull.has('string') && nonNull.has('object'))
+        return 'JSON';
+    return 'VARCHAR';
+}
 /**
  * Compose the caller's AbortSignal with a wall-clock timeout. Returns the
  * caller's signal directly when no timeout is configured or the parent is

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package/package.json CHANGED Viewed

@@ -1,7 +1,7 @@
 {
   "name": "@cyanheads/brapi-mcp-server",
   "mcpName": "io.github.cyanheads/brapi-mcp-server",
-  "version": "0.4.12",
+  "version": "0.4.14",
   "description": "BrAPI v2.1 MCP server — studies, germplasm, observations, genotypes, images, and pedigrees.",
   "author": "Casey Hand @cyanheads (https://github.com/cyanheads/brapi-mcp-server#readme)",
   "type": "module",
@@ -71,7 +71,7 @@
     "access": "public"
   },
   "dependencies": {
-    "@cyanheads/mcp-ts-core": "^0.8.13",
+    "@cyanheads/mcp-ts-core": "^0.8.14",
     "pino-pretty": "^13.1.3"
   },
   "devDependencies": {

package/server.json CHANGED Viewed

@@ -6,14 +6,14 @@
     "url": "https://github.com/cyanheads/brapi-mcp-server",
     "source": "github"
   },
-  "version": "0.4.12",
+  "version": "0.4.14",
   "packages": [
     {
       "registryType": "npm",
       "registryBaseUrl": "https://registry.npmjs.org",
       "identifier": "@cyanheads/brapi-mcp-server",
       "runtimeHint": "bun",
-      "version": "0.4.12",
+      "version": "0.4.14",
       "packageArguments": [
         { "type": "positional", "value": "run" },
         { "type": "positional", "value": "start:stdio" }
@@ -49,7 +49,7 @@
       "registryBaseUrl": "https://registry.npmjs.org",
       "identifier": "@cyanheads/brapi-mcp-server",
       "runtimeHint": "bun",
-      "version": "0.4.12",
+      "version": "0.4.14",
       "packageArguments": [
         { "type": "positional", "value": "run" },
         { "type": "positional", "value": "start:http" }