npm - @cyanheads/brapi-mcp-server - Versions diffs - 0.4.11 → 0.4.13 - Mend

@cyanheads/brapi-mcp-server 0.4.11 → 0.4.13

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (68) hide show

package/dist/mcp-server/tools/definitions/brapi-connect.tool.js CHANGED Viewed

@@ -45,13 +45,13 @@ export const brapiConnect = tool('brapi_connect', {
             .string()
             .url()
             .optional()
-            .describe('BrAPI v2 base URL including any path prefix — e.g. https://test-server.brapi.org/brapi/v2. Falls back to BRAPI_<ALIAS>_BASE_URL, then BRAPI_DEFAULT_BASE_URL.'),
-        auth: ConnectAuthSchema.optional().describe('Auth payload. When omitted, derived from BRAPI_<ALIAS>_* env vars (USERNAME+PASSWORD → sgn; BEARER_TOKEN → bearer; API_KEY → api_key; OAUTH_CLIENT_ID+OAUTH_CLIENT_SECRET → oauth2), then BRAPI_DEFAULT_*, then no auth.'),
+            .describe('BrAPI v2 base URL including any path prefix — e.g. https://test-server.brapi.org/brapi/v2. Omit to use the configured default for this alias.'),
+        auth: ConnectAuthSchema.optional().describe('Auth payload. Omit to use credentials configured server-side for this alias (or no auth when none are configured).'),
         alias: z
             .string()
             .regex(/^[a-zA-Z0-9_-]+$/)
             .default('default')
-            .describe('Alias for this connection. Use distinct aliases to register multiple BrAPI servers in one session. Drives env-var lookup: alias `cassava` reads `BRAPI_CASSAVA_*`.'),
+            .describe('Alias for this connection. Use distinct aliases to register multiple BrAPI servers in one session.'),
     }),
     output: OrientationEnvelopeSchema,
     async handler(input, ctx) {

package/dist/mcp-server/tools/definitions/brapi-connect.tool.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/mcp-server/tools/definitions/brapi-dataframe-describe.tool.d.ts CHANGED Viewed

@@ -33,7 +33,7 @@ export declare const brapiDataframeDescribe: import("@cyanheads/mcp-ts-core").To
 }, z.core.$strip>, readonly [{
     readonly reason: "dataframe_disabled";
     readonly code: JsonRpcErrorCode.ServiceUnavailable;
-    readonly when: "Dataframe surface is gated off by env (CANVAS_PROVIDER_TYPE != duckdb or BRAPI_CANVAS_ENABLED=false)";
-    readonly recovery: "Set CANVAS_PROVIDER_TYPE=duckdb and BRAPI_CANVAS_ENABLED=true on the deployment, or use brapi_manage_dataset to enumerate datasets directly.";
+    readonly when: "Dataframe surface is not enabled on this deployment";
+    readonly recovery: "Use brapi_manage_dataset (mode=list) to enumerate datasets directly — the dataframe surface is gated off here.";
 }]>;
 //# sourceMappingURL=brapi-dataframe-describe.tool.d.ts.map

package/dist/mcp-server/tools/definitions/brapi-dataframe-describe.tool.js CHANGED Viewed

@@ -53,8 +53,8 @@ export const brapiDataframeDescribe = tool('brapi_dataframe_describe', {
         {
             reason: 'dataframe_disabled',
             code: JsonRpcErrorCode.ServiceUnavailable,
-            when: 'Dataframe surface is gated off by env (CANVAS_PROVIDER_TYPE != duckdb or BRAPI_CANVAS_ENABLED=false)',
-            recovery: 'Set CANVAS_PROVIDER_TYPE=duckdb and BRAPI_CANVAS_ENABLED=true on the deployment, or use brapi_manage_dataset to enumerate datasets directly.',
+            when: 'Dataframe surface is not enabled on this deployment',
+            recovery: 'Use brapi_manage_dataset (mode=list) to enumerate datasets directly — the dataframe surface is gated off here.',
         },
     ],
     input: InputSchema,

package/dist/mcp-server/tools/definitions/brapi-dataframe-describe.tool.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/mcp-server/tools/definitions/brapi-dataframe-drop.tool.d.ts CHANGED Viewed

@@ -17,7 +17,7 @@ export declare const brapiDataframeDrop: import("@cyanheads/mcp-ts-core").ToolDe
 }, z.core.$strip>, readonly [{
     readonly reason: "dataframe_disabled";
     readonly code: JsonRpcErrorCode.ServiceUnavailable;
-    readonly when: "Dataframe surface is gated off by env (CANVAS_PROVIDER_TYPE != duckdb or BRAPI_CANVAS_ENABLED=false)";
-    readonly recovery: "Set CANVAS_PROVIDER_TYPE=duckdb and BRAPI_CANVAS_ENABLED=true on the deployment, or use brapi_manage_dataset for the underlying dataset.";
+    readonly when: "Dataframe surface is not enabled on this deployment";
+    readonly recovery: "Use brapi_manage_dataset (mode=delete) to drop the underlying dataset — the dataframe surface is gated off here.";
 }]>;
 //# sourceMappingURL=brapi-dataframe-drop.tool.d.ts.map

package/dist/mcp-server/tools/definitions/brapi-dataframe-drop.tool.js CHANGED Viewed

@@ -29,8 +29,8 @@ export const brapiDataframeDrop = tool('brapi_dataframe_drop', {
         {
             reason: 'dataframe_disabled',
             code: JsonRpcErrorCode.ServiceUnavailable,
-            when: 'Dataframe surface is gated off by env (CANVAS_PROVIDER_TYPE != duckdb or BRAPI_CANVAS_ENABLED=false)',
-            recovery: 'Set CANVAS_PROVIDER_TYPE=duckdb and BRAPI_CANVAS_ENABLED=true on the deployment, or use brapi_manage_dataset for the underlying dataset.',
+            when: 'Dataframe surface is not enabled on this deployment',
+            recovery: 'Use brapi_manage_dataset (mode=delete) to drop the underlying dataset — the dataframe surface is gated off here.',
         },
     ],
     input: InputSchema,

package/dist/mcp-server/tools/definitions/brapi-dataframe-drop.tool.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/mcp-server/tools/definitions/brapi-dataframe-query.tool.d.ts CHANGED Viewed

@@ -27,8 +27,8 @@ export declare const brapiDataframeQuery: import("@cyanheads/mcp-ts-core").ToolD
 }, z.core.$strip>, readonly [{
     readonly reason: "dataframe_disabled";
     readonly code: JsonRpcErrorCode.ServiceUnavailable;
-    readonly when: "Dataframe surface is gated off by env (CANVAS_PROVIDER_TYPE != duckdb or BRAPI_CANVAS_ENABLED=false)";
-    readonly recovery: "Set CANVAS_PROVIDER_TYPE=duckdb and BRAPI_CANVAS_ENABLED=true on the deployment, or use brapi_manage_dataset for the underlying dataset.";
+    readonly when: "Dataframe surface is not enabled on this deployment";
+    readonly recovery: "Use brapi_manage_dataset (mode=load) to page rows from the underlying dataset — SQL across dataframes is gated off here.";
 }, {
     readonly reason: "sql_rejected";
     readonly code: JsonRpcErrorCode.ValidationError;

package/dist/mcp-server/tools/definitions/brapi-dataframe-query.tool.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"brapi-dataframe-query.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-dataframe-query.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;GAaG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAMjD,OAAO,EAAE,gBAAgB,EAAY,MAAM,+BAA+B,CAAC;AAgF3E,eAAO,MAAM,mBAAmB;;;;;;;;;;;;;;;;;;;;GA6D9B,CAAC"}

package/dist/mcp-server/tools/definitions/brapi-dataframe-query.tool.js CHANGED Viewed

@@ -50,13 +50,13 @@ const InputSchema = z.object({
         .positive()
         .max(1000)
         .optional()
-        .describe('Cap the number of rows returned in this response (1–1000). When omitted, the deployment-wide response cap applies (typically 10,000). Lower this with `registerAs` when you only need a sample to verify the query.'),
+        .describe('Cap the number of rows returned in this response (1–1000). When omitted, the deployment-wide response cap applies. Lower this with `registerAs` when you only need a sample to verify the query.'),
     rowLimit: z
         .number()
         .int()
         .positive()
         .optional()
-        .describe('Hard cap on rows materialized into the response. Capped to the deployment-wide response cap (typically 10,000). For larger result sets, use `registerAs` to keep the full result queryable instead of raising this.'),
+        .describe('Hard cap on rows materialized into the response, bounded by the deployment-wide response cap. For larger result sets, use `registerAs` to keep the full result queryable instead of raising this.'),
 });
 const OutputSchema = z.object({
     rowCount: z
@@ -68,7 +68,9 @@ const OutputSchema = z.object({
         .array(z.string().describe('Column name in projection order.'))
         .describe('Column names in projection order.'),
     rows: z
-        .array(z.record(z.string(), z.unknown()).describe('One result row.'))
+        .array(z
+        .record(z.string(), z.unknown())
+        .describe('One result row. Columns are projected from the SQL SELECT clause; call brapi_dataframe_describe to inspect source dataframe schemas.'))
         .describe('Materialized rows, bounded by preview/rowLimit.'),
     dataframe: z
         .string()
@@ -82,8 +84,8 @@ export const brapiDataframeQuery = tool('brapi_dataframe_query', {
         {
             reason: 'dataframe_disabled',
             code: JsonRpcErrorCode.ServiceUnavailable,
-            when: 'Dataframe surface is gated off by env (CANVAS_PROVIDER_TYPE != duckdb or BRAPI_CANVAS_ENABLED=false)',
-            recovery: 'Set CANVAS_PROVIDER_TYPE=duckdb and BRAPI_CANVAS_ENABLED=true on the deployment, or use brapi_manage_dataset for the underlying dataset.',
+            when: 'Dataframe surface is not enabled on this deployment',
+            recovery: 'Use brapi_manage_dataset (mode=load) to page rows from the underlying dataset — SQL across dataframes is gated off here.',
         },
         {
             reason: 'sql_rejected',

package/dist/mcp-server/tools/definitions/brapi-dataframe-query.tool.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.d.ts CHANGED Viewed

@@ -78,6 +78,6 @@ export declare const brapiFindGenotypeCalls: import("@cyanheads/mcp-ts-core").To
     readonly reason: "search_endpoint_disabled";
     readonly code: JsonRpcErrorCode.ValidationError;
     readonly when: "The active dialect declares POST /search/calls as known-dead on this server";
-    readonly recovery: "Pin BRAPI_<ALIAS>_DIALECT=spec to bypass the dialect, or query a different server that exposes a working /search/calls route.";
+    readonly recovery: "Connect to a different BrAPI server that exposes a working /search/calls route — genotype-call workflows are not viable here.";
 }]>;
 //# sourceMappingURL=brapi-find-genotype-calls.tool.d.ts.map

package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.js CHANGED Viewed

@@ -120,7 +120,7 @@ export const brapiFindGenotypeCalls = tool('brapi_find_genotype_calls', {
             reason: 'search_endpoint_disabled',
             code: JsonRpcErrorCode.ValidationError,
             when: 'The active dialect declares POST /search/calls as known-dead on this server',
-            recovery: 'Pin BRAPI_<ALIAS>_DIALECT=spec to bypass the dialect, or query a different server that exposes a working /search/calls route.',
+            recovery: 'Connect to a different BrAPI server that exposes a working /search/calls route — genotype-call workflows are not viable here.',
         },
     ],
     input: z.object({
@@ -359,7 +359,7 @@ async function collectCalls(input) {
     if (rows.length > input.maxCalls) {
         rows.length = input.maxCalls;
         truncated = true;
-        input.warnings.push(`Truncated at the deployment pull limit (${input.maxCalls} rows). Narrow the filters and re-pull, or have the operator raise BRAPI_GENOTYPE_CALLS_MAX_PULL.`);
+        input.warnings.push(`Truncated at the deployment pull limit (${input.maxCalls} rows). Narrow the filters and re-pull; the captured slice is preserved in the spilled dataset.`);
     }
     return { rows, callFormatting, truncated };
 }

package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/mcp-server/tools/definitions/brapi-find-locations.tool.js CHANGED Viewed

@@ -221,7 +221,7 @@ export const brapiFindLocations = tool('brapi_find_locations', {
                 coordinateAxisOrder = 'swapped';
                 filteredFull = swappedFull;
                 filteredReturned = firstPage.rows.filter((r) => insideBbox(r, bbox, 'swapped'));
-                warnings.push(`Server appears to store GeoJSON coordinates as [lat, lon, alt] rather than the spec-required [lon, lat, alt]. Bbox matches returned under the swapped interpretation; report to the server operator so the source quirk gets fixed upstream.`);
+                warnings.push(`Server appears to store GeoJSON coordinates as [lat, lon, alt] rather than the spec-required [lon, lat, alt]. Bbox matches returned under the swapped interpretation; the upstream coordinate convention is non-conformant and should be flagged.`);
             }
             else {
                 warnings.push(`bbox excluded all ${fullRows.length} upstream location(s). Verify the latitude/longitude window matches the server's coordinate convention.`);

package/dist/mcp-server/tools/definitions/brapi-find-locations.tool.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/mcp-server/tools/definitions/brapi-find-studies.tool.d.ts CHANGED Viewed

@@ -35,7 +35,7 @@ export declare const brapiFindStudies: import("@cyanheads/mcp-ts-core").ToolDefi
         locationDbId: z.ZodOptional<z.ZodNullable<z.ZodString>>;
         locationName: z.ZodOptional<z.ZodNullable<z.ZodString>>;
         commonCropName: z.ZodOptional<z.ZodNullable<z.ZodString>>;
-        seasons: z.ZodOptional<z.ZodNullable<z.ZodArray<z.ZodString>>>;
+        seasons: z.ZodOptional<z.ZodNullable<z.ZodArray<z.ZodNullable<z.ZodString>>>>;
         active: z.ZodOptional<z.ZodNullable<z.ZodBoolean>>;
         startDate: z.ZodOptional<z.ZodNullable<z.ZodString>>;
         endDate: z.ZodOptional<z.ZodNullable<z.ZodString>>;

package/dist/mcp-server/tools/definitions/brapi-find-studies.tool.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"brapi-find-studies.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-find-studies.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;~~AA4HjE~~,eAAO,MAAM,gBAAgB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;~~GAkP3B~~,CAAC"}
1	+ {"version":3,"file":"brapi-find-studies.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-find-studies.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAmIjE,eAAO,MAAM,gBAAgB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAmP3B,CAAC"}

package/dist/mcp-server/tools/definitions/brapi-find-studies.tool.js CHANGED Viewed

@@ -30,7 +30,10 @@ const StudyRowSchema = z
     locationName: z.string().nullish().describe('Display name of the study site.'),
     commonCropName: z.string().nullish().describe('Common crop name (e.g. "Maize", "Wheat").'),
     seasons: z
-        .array(z.string().describe('Season identifier — typically a year like "2022".'))
+        .array(z
+        .string()
+        .nullable()
+        .describe('Season identifier — typically a year like "2022". Nullable: some Breedbase deployments emit a null entry when the study is missing a season.'))
         .nullish()
         .describe('Season identifiers this study spans.'),
     active: z.boolean().nullish().describe('True while the study is open for data capture.'),
@@ -104,7 +107,7 @@ const SERVER_TO_USER = {
     active: 'active',
 };
 export const brapiFindStudies = tool('brapi_find_studies', {
-    description: 'Locate studies matching crop, trial type, season, location, or program. Results are enriched with program/trial/location context in one call. Returns a dataset handle when the upstream total exceeds loadLimit.',
+    description: 'Locate studies matching crop, trial type, season, location, or program. Enriches results with program/trial/location context in one call. Returns a dataset handle when the upstream total exceeds loadLimit.',
     annotations: { readOnlyHint: true, openWorldHint: true },
     errors: [
         {
@@ -302,8 +305,9 @@ export const brapiFindStudies = tool('brapi_find_studies', {
                     parts.push(`location=${study.locationName}`);
                 if (study.locationDbId)
                     parts.push(`locationDbId=${study.locationDbId}`);
-                if (study.seasons?.length)
-                    parts.push(`seasons=${study.seasons.join(',')}`);
+                const cleanSeasons = asStringArray(study.seasons);
+                if (cleanSeasons?.length)
+                    parts.push(`seasons=${cleanSeasons.join(',')}`);
                 if (study.commonCropName)
                     parts.push(`crop=${study.commonCropName}`);
                 if (study.active != null)

package/dist/mcp-server/tools/definitions/brapi-find-studies.tool.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/mcp-server/tools/definitions/brapi-get-image.tool.js CHANGED Viewed

@@ -113,7 +113,7 @@ export const brapiGetImage = tool('brapi_get_image', {
                 if (entry.payload.source === 'imageURL' && !entry.payload.mimeType.startsWith('image/')) {
                     warnings.push({
                         imageDbId: entry.payload.imageDbId,
-                        warning: `imageURL fallback returned content-type '${entry.payload.mimeType}' (not image/*) — the upstream URL likely points at an HTML error page or wrong resource. The bytes are returned as-is; the LLM may not be able to render them.`,
+                        warning: `imageURL fallback returned content-type '${entry.payload.mimeType}' (not image/*) — the upstream URL likely points at an HTML error page or wrong resource. The bytes are returned as-is and may not render as an image.`,
                     });
                 }
             }

package/dist/mcp-server/tools/definitions/brapi-get-image.tool.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/mcp-server/tools/definitions/brapi-get-study.tool.d.ts CHANGED Viewed

@@ -25,7 +25,7 @@ export declare const brapiGetStudy: import("@cyanheads/mcp-ts-core").ToolDefinit
         locationDbId: z.ZodOptional<z.ZodNullable<z.ZodString>>;
         locationName: z.ZodOptional<z.ZodNullable<z.ZodString>>;
         commonCropName: z.ZodOptional<z.ZodNullable<z.ZodString>>;
-        seasons: z.ZodOptional<z.ZodNullable<z.ZodArray<z.ZodString>>>;
+        seasons: z.ZodOptional<z.ZodNullable<z.ZodArray<z.ZodNullable<z.ZodString>>>>;
         active: z.ZodOptional<z.ZodNullable<z.ZodBoolean>>;
         startDate: z.ZodOptional<z.ZodNullable<z.ZodString>>;
         endDate: z.ZodOptional<z.ZodNullable<z.ZodString>>;

package/dist/mcp-server/tools/definitions/brapi-get-study.tool.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"brapi-get-study.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-get-study.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AA6IjE,eAAO,MAAM,aAAa;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GA+PxB,CAAC"}