@cyanheads/brapi-mcp-server 0.3.9 → 0.4.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (76) hide show
  1. package/CLAUDE.md +3 -2
  2. package/README.md +1 -1
  3. package/changelog/0.4.x/0.4.0.md +29 -0
  4. package/changelog/0.4.x/0.4.1.md +20 -0
  5. package/dist/index.js +2 -0
  6. package/dist/index.js.map +1 -1
  7. package/dist/mcp-server/tools/definitions/brapi-connect.tool.d.ts +11 -0
  8. package/dist/mcp-server/tools/definitions/brapi-connect.tool.d.ts.map +1 -1
  9. package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.d.ts +5 -0
  10. package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.d.ts.map +1 -1
  11. package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.js +11 -0
  12. package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.js.map +1 -1
  13. package/dist/mcp-server/tools/definitions/brapi-find-germplasm.tool.d.ts.map +1 -1
  14. package/dist/mcp-server/tools/definitions/brapi-find-germplasm.tool.js +53 -31
  15. package/dist/mcp-server/tools/definitions/brapi-find-germplasm.tool.js.map +1 -1
  16. package/dist/mcp-server/tools/definitions/brapi-find-images.tool.d.ts.map +1 -1
  17. package/dist/mcp-server/tools/definitions/brapi-find-images.tool.js +14 -2
  18. package/dist/mcp-server/tools/definitions/brapi-find-images.tool.js.map +1 -1
  19. package/dist/mcp-server/tools/definitions/brapi-find-locations.tool.d.ts.map +1 -1
  20. package/dist/mcp-server/tools/definitions/brapi-find-locations.tool.js +12 -2
  21. package/dist/mcp-server/tools/definitions/brapi-find-locations.tool.js.map +1 -1
  22. package/dist/mcp-server/tools/definitions/brapi-find-observations.tool.d.ts.map +1 -1
  23. package/dist/mcp-server/tools/definitions/brapi-find-observations.tool.js +17 -2
  24. package/dist/mcp-server/tools/definitions/brapi-find-observations.tool.js.map +1 -1
  25. package/dist/mcp-server/tools/definitions/brapi-find-studies.tool.d.ts +0 -1
  26. package/dist/mcp-server/tools/definitions/brapi-find-studies.tool.d.ts.map +1 -1
  27. package/dist/mcp-server/tools/definitions/brapi-find-studies.tool.js +19 -11
  28. package/dist/mcp-server/tools/definitions/brapi-find-studies.tool.js.map +1 -1
  29. package/dist/mcp-server/tools/definitions/brapi-find-variables.tool.d.ts.map +1 -1
  30. package/dist/mcp-server/tools/definitions/brapi-find-variables.tool.js +16 -3
  31. package/dist/mcp-server/tools/definitions/brapi-find-variables.tool.js.map +1 -1
  32. package/dist/mcp-server/tools/definitions/brapi-find-variants.tool.d.ts.map +1 -1
  33. package/dist/mcp-server/tools/definitions/brapi-find-variants.tool.js +11 -2
  34. package/dist/mcp-server/tools/definitions/brapi-find-variants.tool.js.map +1 -1
  35. package/dist/mcp-server/tools/definitions/brapi-raw-search.tool.d.ts +7 -1
  36. package/dist/mcp-server/tools/definitions/brapi-raw-search.tool.d.ts.map +1 -1
  37. package/dist/mcp-server/tools/definitions/brapi-raw-search.tool.js +19 -0
  38. package/dist/mcp-server/tools/definitions/brapi-raw-search.tool.js.map +1 -1
  39. package/dist/mcp-server/tools/definitions/brapi-server-info.tool.d.ts +11 -0
  40. package/dist/mcp-server/tools/definitions/brapi-server-info.tool.d.ts.map +1 -1
  41. package/dist/mcp-server/tools/definitions/index.d.ts +33 -2
  42. package/dist/mcp-server/tools/definitions/index.d.ts.map +1 -1
  43. package/dist/mcp-server/tools/shared/find-helpers.d.ts +8 -0
  44. package/dist/mcp-server/tools/shared/find-helpers.d.ts.map +1 -1
  45. package/dist/mcp-server/tools/shared/find-helpers.js +11 -0
  46. package/dist/mcp-server/tools/shared/find-helpers.js.map +1 -1
  47. package/dist/mcp-server/tools/shared/orientation-envelope.d.ts +22 -0
  48. package/dist/mcp-server/tools/shared/orientation-envelope.d.ts.map +1 -1
  49. package/dist/mcp-server/tools/shared/orientation-envelope.js +39 -0
  50. package/dist/mcp-server/tools/shared/orientation-envelope.js.map +1 -1
  51. package/dist/services/brapi-dialect/cassavabase-dialect.d.ts +28 -0
  52. package/dist/services/brapi-dialect/cassavabase-dialect.d.ts.map +1 -0
  53. package/dist/services/brapi-dialect/cassavabase-dialect.js +193 -0
  54. package/dist/services/brapi-dialect/cassavabase-dialect.js.map +1 -0
  55. package/dist/services/brapi-dialect/detect.d.ts +53 -0
  56. package/dist/services/brapi-dialect/detect.d.ts.map +1 -0
  57. package/dist/services/brapi-dialect/detect.js +68 -0
  58. package/dist/services/brapi-dialect/detect.js.map +1 -0
  59. package/dist/services/brapi-dialect/index.d.ts +29 -0
  60. package/dist/services/brapi-dialect/index.d.ts.map +1 -0
  61. package/dist/services/brapi-dialect/index.js +31 -0
  62. package/dist/services/brapi-dialect/index.js.map +1 -0
  63. package/dist/services/brapi-dialect/registry.d.ts +25 -0
  64. package/dist/services/brapi-dialect/registry.d.ts.map +1 -0
  65. package/dist/services/brapi-dialect/registry.js +39 -0
  66. package/dist/services/brapi-dialect/registry.js.map +1 -0
  67. package/dist/services/brapi-dialect/spec-dialect.d.ts +13 -0
  68. package/dist/services/brapi-dialect/spec-dialect.d.ts.map +1 -0
  69. package/dist/services/brapi-dialect/spec-dialect.js +17 -0
  70. package/dist/services/brapi-dialect/spec-dialect.js.map +1 -0
  71. package/dist/services/brapi-dialect/types.d.ts +58 -0
  72. package/dist/services/brapi-dialect/types.d.ts.map +1 -0
  73. package/dist/services/brapi-dialect/types.js +18 -0
  74. package/dist/services/brapi-dialect/types.js.map +1 -0
  75. package/package.json +1 -1
  76. package/server.json +3 -3
package/dist/mcp-server/tools/definitions/brapi-find-images.tool.js.map CHANGED
@@ -1 +1 @@
1
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package/dist/mcp-server/tools/definitions/brapi-find-locations.tool.d.ts.map CHANGED
@@ -1 +1 @@
1
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+ {"version":3,"file":"brapi-find-locations.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-find-locations.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAoIjD,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;6BAgQ7B,CAAC"}
package/dist/mcp-server/tools/definitions/brapi-find-locations.tool.js CHANGED
@@ -10,10 +10,11 @@
10
10
  import { tool, z } from '@cyanheads/mcp-ts-core';
11
11
  import { getServerConfig } from '../../../config/server-config.js';
12
12
  import { getBrapiClient } from '../../../services/brapi-client/index.js';
13
+ import { resolveDialect } from '../../../services/brapi-dialect/index.js';
13
14
  import { getCapabilityRegistry } from '../../../services/capability-registry/index.js';
14
15
  import { getDatasetStore } from '../../../services/dataset-store/index.js';
15
16
  import { DEFAULT_ALIAS, getServerRegistry } from '../../../services/server-registry/index.js';
16
- import { AliasInput, asString, buildRefinementHint, checkFilterMatchRates, computeDistribution, DatasetHandleSchema, ExtraFiltersInput, extractCoordinates, hasPointGeometry, LoadLimitInput, loadInitialPage, maybeSpill, mergeFilters, renderAppliedFilters, renderDatasetHandle, renderDistributions, renderFindHeader, } from '../shared/find-helpers.js';
17
+ import { AliasInput, applyDialectFilters, asString, buildRefinementHint, checkFilterMatchRates, computeDistribution, DatasetHandleSchema, ExtraFiltersInput, extractCoordinates, hasPointGeometry, LoadLimitInput, loadInitialPage, maybeSpill, mergeFilters, renderAppliedFilters, renderDatasetHandle, renderDistributions, renderFindHeader, } from '../shared/find-helpers.js';
17
18
  const LocationRowSchema = z
18
19
  .object({
19
20
  locationDbId: z.string().describe('Server-side identifier for the location.'),
@@ -87,11 +88,18 @@ const OutputSchema = z.object({
87
88
  .describe('Axis interpretation used when reading GeoJSON Point coordinates. "spec" follows the GeoJSON RFC 7946 [lon, lat, alt?] convention. "swapped" indicates the upstream server stores [lat, lon, alt?] (non-conformant) and bbox + rendered coordinates were interpreted accordingly.'),
88
89
  });
89
90
  const SERVER_TO_USER = {
91
+ // Plurals — BrAPI v2.1 spec.
90
92
  locationDbIds: 'locations',
91
93
  locationNames: 'locationNames',
92
94
  countryCodes: 'countryCodes',
93
95
  locationTypes: 'locationTypes',
94
96
  abbreviations: 'abbreviations',
97
+ // Singulars — SGN-family dialects.
98
+ locationDbId: 'locations',
99
+ locationName: 'locationNames',
100
+ countryCode: 'countryCodes',
101
+ locationType: 'locationTypes',
102
+ abbreviation: 'abbreviations',
95
103
  };
96
104
  export const brapiFindLocations = tool('brapi_find_locations', {
97
105
  description: 'Find research stations / field sites by country, abbreviation, type, location ID, or free-text. Optional bbox parameter restricts rows to a latitude/longitude window. When the spec-correct GeoJSON [lon, lat, alt] reading produces zero matches and at least one row carries a Point geometry, the bbox filter retries once with axes swapped (handles non-conformant servers that store [lat, lon, alt]) and surfaces a warning + `coordinateAxisOrder: "swapped"`. Returns a dataset handle when the upstream total exceeds loadLimit.',
@@ -150,14 +158,16 @@ export const brapiFindLocations = tool('brapi_find_locations', {
150
158
  if (connection.resolvedAuth)
151
159
  capabilityLookup.auth = connection.resolvedAuth;
152
160
  await capabilities.ensure(connection.baseUrl, { service: 'locations', method: 'GET' }, ctx, capabilityLookup);
161
+ const dialect = await resolveDialect(connection, ctx, capabilityLookup);
153
162
  const warnings = [];
154
- const filters = mergeFilters({
163
+ const merged = mergeFilters({
155
164
  locationDbIds: input.locations,
156
165
  locationNames: input.locationNames,
157
166
  countryCodes: input.countryCodes,
158
167
  locationTypes: input.locationTypes,
159
168
  abbreviations: input.abbreviations,
160
169
  }, input.extraFilters, warnings);
170
+ const filters = applyDialectFilters(dialect, 'locations', merged, warnings);
161
171
  const loadLimit = input.loadLimit ?? config.loadLimit;
162
172
  const firstPage = await loadInitialPage(client, connection, '/locations', filters, loadLimit, ctx);
163
173
  const { fullRows, dataset: datasetMeta } = await maybeSpill({
package/dist/mcp-server/tools/definitions/brapi-find-locations.tool.js.map CHANGED
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package/dist/mcp-server/tools/definitions/brapi-find-observations.tool.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"brapi-find-observations.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-find-observations.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AA+IjD,eAAO,MAAM,qBAAqB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;6BAyMhC,CAAC"}
1
+ {"version":3,"file":"brapi-find-observations.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-find-observations.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AA6JjD,eAAO,MAAM,qBAAqB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;6BA6MhC,CAAC"}
package/dist/mcp-server/tools/definitions/brapi-find-observations.tool.js CHANGED
@@ -10,10 +10,11 @@
10
10
  import { tool, z } from '@cyanheads/mcp-ts-core';
11
11
  import { getServerConfig } from '../../../config/server-config.js';
12
12
  import { getBrapiClient } from '../../../services/brapi-client/index.js';
13
+ import { resolveDialect } from '../../../services/brapi-dialect/index.js';
13
14
  import { getCapabilityRegistry } from '../../../services/capability-registry/index.js';
14
15
  import { getDatasetStore } from '../../../services/dataset-store/index.js';
15
16
  import { DEFAULT_ALIAS, getServerRegistry } from '../../../services/server-registry/index.js';
16
- import { AliasInput, asString, buildRefinementHint, checkFilterMatchRates, computeDistribution, DatasetHandleSchema, ExtraFiltersInput, LoadLimitInput, loadInitialPage, maybeSpill, mergeFilters, renderAppliedFilters, renderDatasetHandle, renderDistributions, renderFindHeader, } from '../shared/find-helpers.js';
17
+ import { AliasInput, applyDialectFilters, asString, buildRefinementHint, checkFilterMatchRates, computeDistribution, DatasetHandleSchema, ExtraFiltersInput, LoadLimitInput, loadInitialPage, maybeSpill, mergeFilters, renderAppliedFilters, renderDatasetHandle, renderDistributions, renderFindHeader, } from '../shared/find-helpers.js';
17
18
  const ObservationRowSchema = z
18
19
  .object({
19
20
  observationDbId: z.string().optional().describe('Server-side identifier for the observation.'),
@@ -112,6 +113,7 @@ const OutputSchema = z.object({
112
113
  .describe('The final filter map sent to the server (named + extraFilters).'),
113
114
  });
114
115
  const SERVER_TO_USER = {
116
+ // Plurals — BrAPI v2.1 spec, used by the `spec` dialect.
115
117
  studyDbIds: 'studies',
116
118
  germplasmDbIds: 'germplasm',
117
119
  observationVariableDbIds: 'variables',
@@ -121,6 +123,17 @@ const SERVER_TO_USER = {
121
123
  programDbIds: 'programs',
122
124
  trialDbIds: 'trials',
123
125
  observationLevels: 'observationLevels',
126
+ // Singulars — emitted by SGN-family dialects (cassavabase, etc.).
127
+ studyDbId: 'studies',
128
+ germplasmDbId: 'germplasm',
129
+ observationVariableDbId: 'variables',
130
+ observationUnitDbId: 'observationUnits',
131
+ observationDbId: 'observations',
132
+ seasonDbId: 'seasons',
133
+ programDbId: 'programs',
134
+ trialDbId: 'trials',
135
+ observationLevel: 'observationLevels',
136
+ // Range scalars — same on the wire either way.
124
137
  observationTimeStampRangeStart: 'timestampFrom',
125
138
  observationTimeStampRangeEnd: 'timestampTo',
126
139
  };
@@ -158,8 +171,9 @@ export const brapiFindObservations = tool('brapi_find_observations', {
158
171
  if (connection.resolvedAuth)
159
172
  capabilityLookup.auth = connection.resolvedAuth;
160
173
  await capabilities.ensure(connection.baseUrl, { service: 'observations', method: 'GET' }, ctx, capabilityLookup);
174
+ const dialect = await resolveDialect(connection, ctx, capabilityLookup);
161
175
  const warnings = [];
162
- const filters = mergeFilters({
176
+ const merged = mergeFilters({
163
177
  studyDbIds: input.studies,
164
178
  germplasmDbIds: input.germplasm,
165
179
  observationVariableDbIds: input.variables,
@@ -172,6 +186,7 @@ export const brapiFindObservations = tool('brapi_find_observations', {
172
186
  observationTimeStampRangeStart: input.timestampFrom,
173
187
  observationTimeStampRangeEnd: input.timestampTo,
174
188
  }, input.extraFilters, warnings);
189
+ const filters = applyDialectFilters(dialect, 'observations', merged, warnings);
175
190
  const loadLimit = input.loadLimit ?? config.loadLimit;
176
191
  const firstPage = await loadInitialPage(client, connection, '/observations', filters, loadLimit, ctx);
177
192
  const { fullRows, dataset: datasetMeta } = await maybeSpill({
package/dist/mcp-server/tools/definitions/brapi-find-observations.tool.js.map CHANGED
@@ -1 +1 @@
1
- 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package/dist/mcp-server/tools/definitions/brapi-find-studies.tool.d.ts CHANGED
@@ -18,7 +18,6 @@ export declare const brapiFindStudies: import("@cyanheads/mcp-ts-core").ToolDefi
18
18
  trials: z.ZodOptional<z.ZodArray<z.ZodString>>;
19
19
  studyNames: z.ZodOptional<z.ZodArray<z.ZodString>>;
20
20
  active: z.ZodOptional<z.ZodBoolean>;
21
- text: z.ZodOptional<z.ZodString>;
22
21
  loadLimit: z.ZodOptional<z.ZodNumber>;
23
22
  extraFilters: z.ZodOptional<z.ZodRecord<z.ZodString, z.ZodUnknown>>;
24
23
  }, z.core.$strip>, z.ZodObject<{
package/dist/mcp-server/tools/definitions/brapi-find-studies.tool.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"brapi-find-studies.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-find-studies.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AA4GjD,eAAO,MAAM,gBAAgB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;6BAiN3B,CAAC"}
1
+ {"version":3,"file":"brapi-find-studies.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-find-studies.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAyHjD,eAAO,MAAM,gBAAgB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;6BA+M3B,CAAC"}
package/dist/mcp-server/tools/definitions/brapi-find-studies.tool.js CHANGED
@@ -10,10 +10,11 @@
10
10
  import { tool, z } from '@cyanheads/mcp-ts-core';
11
11
  import { getServerConfig } from '../../../config/server-config.js';
12
12
  import { getBrapiClient } from '../../../services/brapi-client/index.js';
13
+ import { resolveDialect } from '../../../services/brapi-dialect/index.js';
13
14
  import { getCapabilityRegistry } from '../../../services/capability-registry/index.js';
14
15
  import { getDatasetStore } from '../../../services/dataset-store/index.js';
15
16
  import { DEFAULT_ALIAS, getServerRegistry } from '../../../services/server-registry/index.js';
16
- import { AliasInput, asString, asStringArray, buildRefinementHint, checkFilterMatchRates, computeDistribution, DatasetHandleSchema, ExtraFiltersInput, LoadLimitInput, loadInitialPage, maybeSpill, mergeFilters, renderAppliedFilters, renderDatasetHandle, renderDistributions, renderFindHeader, } from '../shared/find-helpers.js';
17
+ import { AliasInput, applyDialectFilters, asString, asStringArray, buildRefinementHint, checkFilterMatchRates, computeDistribution, DatasetHandleSchema, ExtraFiltersInput, LoadLimitInput, loadInitialPage, maybeSpill, mergeFilters, renderAppliedFilters, renderDatasetHandle, renderDistributions, renderFindHeader, } from '../shared/find-helpers.js';
17
18
  const StudyRowSchema = z
18
19
  .object({
19
20
  studyDbId: z.string().describe('Server-side identifier for the study.'),
@@ -78,8 +79,11 @@ const OutputSchema = z.object({
78
79
  });
79
80
  /** Server-side filter key → user-facing tool param name. Used in format() to
80
81
  * render `Applied filters` so the user can correlate what they typed with
81
- * what got sent upstream. */
82
+ * what got sent upstream. Both plural (BrAPI v2.1 spec) and singular forms
83
+ * are listed because dialect adapters may downcast to singular before the
84
+ * call; the rendered map should still trace back to the user's param. */
82
85
  const SERVER_TO_USER = {
86
+ // Plurals — BrAPI v2.1 spec, used by the `spec` dialect.
83
87
  commonCropNames: 'crop',
84
88
  studyTypes: 'trialTypes',
85
89
  seasonDbIds: 'seasons',
@@ -87,11 +91,19 @@ const SERVER_TO_USER = {
87
91
  programDbIds: 'programs',
88
92
  trialDbIds: 'trials',
89
93
  studyNames: 'studyNames',
94
+ // Singulars — emitted by SGN-family dialects (cassavabase, etc.).
95
+ commonCropName: 'crop',
96
+ studyType: 'trialTypes',
97
+ seasonDbId: 'seasons',
98
+ locationDbId: 'locations',
99
+ programDbId: 'programs',
100
+ trialDbId: 'trials',
101
+ studyName: 'studyNames',
102
+ // Scalars — same on the wire either way.
90
103
  active: 'active',
91
- searchText: 'text',
92
104
  };
93
105
  export const brapiFindStudies = tool('brapi_find_studies', {
94
- description: 'Locate studies matching crop, trial type, season, location, program, or free-text criteria. Results are enriched with program/trial/location context in one call. Returns a dataset handle when the upstream total exceeds loadLimit.',
106
+ description: 'Locate studies matching crop, trial type, season, location, or program. Results are enriched with program/trial/location context in one call. Returns a dataset handle when the upstream total exceeds loadLimit.',
95
107
  annotations: { readOnlyHint: true, openWorldHint: true },
96
108
  input: z.object({
97
109
  alias: AliasInput,
@@ -106,10 +118,6 @@ export const brapiFindStudies = tool('brapi_find_studies', {
106
118
  trials: z.array(z.string()).optional().describe('Filter by trialDbIds.'),
107
119
  studyNames: z.array(z.string()).optional().describe('Filter by study display name.'),
108
120
  active: z.boolean().optional().describe('Restrict to active / inactive studies.'),
109
- text: z
110
- .string()
111
- .optional()
112
- .describe('Free-text search across study fields (server-supported subset).'),
113
121
  loadLimit: LoadLimitInput,
114
122
  extraFilters: ExtraFiltersInput,
115
123
  }),
@@ -125,8 +133,9 @@ export const brapiFindStudies = tool('brapi_find_studies', {
125
133
  if (connection.resolvedAuth)
126
134
  capabilityLookup.auth = connection.resolvedAuth;
127
135
  await capabilities.ensure(connection.baseUrl, { service: 'studies', method: 'GET' }, ctx, capabilityLookup);
136
+ const dialect = await resolveDialect(connection, ctx, capabilityLookup);
128
137
  const warnings = [];
129
- const filters = mergeFilters({
138
+ const merged = mergeFilters({
130
139
  commonCropNames: input.crop !== undefined ? [input.crop] : undefined,
131
140
  studyTypes: input.trialTypes,
132
141
  seasonDbIds: input.seasons,
@@ -135,8 +144,8 @@ export const brapiFindStudies = tool('brapi_find_studies', {
135
144
  trialDbIds: input.trials,
136
145
  studyNames: input.studyNames,
137
146
  active: input.active,
138
- searchText: input.text,
139
147
  }, input.extraFilters, warnings);
148
+ const filters = applyDialectFilters(dialect, 'studies', merged, warnings);
140
149
  const loadLimit = input.loadLimit ?? config.loadLimit;
141
150
  const firstPage = await loadInitialPage(client, connection, '/studies', filters, loadLimit, ctx);
142
151
  const { fullRows, dataset: datasetMeta } = await maybeSpill({
@@ -183,7 +192,6 @@ export const brapiFindStudies = tool('brapi_find_studies', {
183
192
  'trials',
184
193
  'studyNames',
185
194
  'active',
186
- 'text',
187
195
  ],
188
196
  });
189
197
  ctx.log.info('find_studies completed', {
package/dist/mcp-server/tools/definitions/brapi-find-studies.tool.js.map CHANGED
@@ -1 +1 @@
1
- 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package/dist/mcp-server/tools/definitions/brapi-find-variables.tool.d.ts.map CHANGED
@@ -1 +1 @@
1
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1
+ {"version":3,"file":"brapi-find-variables.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-find-variables.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AA+KjD,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;6BAiR7B,CAAC"}
package/dist/mcp-server/tools/definitions/brapi-find-variables.tool.js CHANGED
@@ -10,11 +10,12 @@
10
10
  import { tool, z } from '@cyanheads/mcp-ts-core';
11
11
  import { getServerConfig } from '../../../config/server-config.js';
12
12
  import { getBrapiClient } from '../../../services/brapi-client/index.js';
13
+ import { resolveDialect } from '../../../services/brapi-dialect/index.js';
13
14
  import { getCapabilityRegistry } from '../../../services/capability-registry/index.js';
14
15
  import { getDatasetStore } from '../../../services/dataset-store/index.js';
15
16
  import { getOntologyResolver, } from '../../../services/ontology-resolver/index.js';
16
17
  import { DEFAULT_ALIAS, getServerRegistry } from '../../../services/server-registry/index.js';
17
- import { AliasInput, asString, buildRefinementHint, checkFilterMatchRates, computeDistribution, DatasetHandleSchema, ExtraFiltersInput, LoadLimitInput, loadInitialPage, maybeSpill, mergeFilters, renderAppliedFilters, renderDatasetHandle, renderDistributions, renderFindHeader, } from '../shared/find-helpers.js';
18
+ import { AliasInput, applyDialectFilters, asString, buildRefinementHint, checkFilterMatchRates, computeDistribution, DatasetHandleSchema, ExtraFiltersInput, LoadLimitInput, loadInitialPage, maybeSpill, mergeFilters, renderAppliedFilters, renderDatasetHandle, renderDistributions, renderFindHeader, } from '../shared/find-helpers.js';
18
19
  const VariableRowSchema = z
19
20
  .object({
20
21
  observationVariableDbId: z
@@ -127,14 +128,24 @@ const OutputSchema = z.object({
127
128
  .describe('The final filter map sent to the server (named + extraFilters).'),
128
129
  });
129
130
  const SERVER_TO_USER = {
131
+ // Plurals — BrAPI v2.1 spec.
130
132
  observationVariableDbIds: 'variables',
131
133
  observationVariableNames: 'variableNames',
132
134
  observationVariablePUIs: 'variablePUIs',
133
135
  traitClasses: 'traitClasses',
134
136
  ontologyDbIds: 'ontologies',
135
- studyDbId: 'studies',
136
137
  methodDbIds: 'methods',
137
138
  scaleDbIds: 'scales',
139
+ // Singulars — SGN-family dialects + BrAPI's already-singular variable filters.
140
+ observationVariableDbId: 'variables',
141
+ observationVariableName: 'variableNames',
142
+ observationVariablePUI: 'variablePUIs',
143
+ traitClass: 'traitClasses',
144
+ ontologyDbId: 'ontologies',
145
+ methodDbId: 'methods',
146
+ scaleDbId: 'scales',
147
+ // Already-singular per BrAPI spec — same on the wire either way.
148
+ studyDbId: 'studies',
138
149
  commonCropName: 'crop',
139
150
  };
140
151
  export const brapiFindVariables = tool('brapi_find_variables', {
@@ -176,8 +187,9 @@ export const brapiFindVariables = tool('brapi_find_variables', {
176
187
  await capabilities.ensure(connection.baseUrl, { service: 'variables', method: 'GET' }, ctx, capabilityLookup);
177
188
  const profile = await capabilities.profile(connection.baseUrl, ctx, capabilityLookup);
178
189
  const hasOntologyEndpoint = Boolean(profile.supported.ontologies);
190
+ const dialect = await resolveDialect(connection, ctx, capabilityLookup);
179
191
  const warnings = [];
180
- const filters = mergeFilters({
192
+ const merged = mergeFilters({
181
193
  observationVariableDbIds: input.variables,
182
194
  observationVariableNames: input.variableNames,
183
195
  observationVariablePUIs: input.variablePUIs,
@@ -188,6 +200,7 @@ export const brapiFindVariables = tool('brapi_find_variables', {
188
200
  scaleDbIds: input.scales,
189
201
  commonCropName: input.crop,
190
202
  }, input.extraFilters, warnings);
203
+ const filters = applyDialectFilters(dialect, 'variables', merged, warnings);
191
204
  if ((input.studies?.length ?? 0) > 1) {
192
205
  warnings.push('BrAPI /variables accepts only one studyDbId per call; using the first value from `studies`.');
193
206
  }
package/dist/mcp-server/tools/definitions/brapi-find-variables.tool.js.map CHANGED
@@ -1 +1 @@
1
- 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package/dist/mcp-server/tools/definitions/brapi-find-variants.tool.d.ts.map CHANGED
@@ -1 +1 @@
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