@cyanheads/brapi-mcp-server 0.3.8 → 0.4.1

package/dist/services/brapi-dialect/index.d.ts

@@ -0,0 +1,29 @@
+/**
+ * @fileoverview Public API for the BrAPI dialect service. Tools call
+ * `resolveDialect(connection, ctx)` to get a per-connection adapter, then
+ * `dialect.adaptGetFilters(endpoint, filters)` before serializing a GET
+ * call. Detection runs once per connection per ctx (the underlying
+ * capability profile is cached in `ctx.state`), so repeated calls are
+ * cheap.
+ *
+ * @module services/brapi-dialect
+ */
+import type { Context } from '@cyanheads/mcp-ts-core';
+import type { ResolvedAuth } from '../../services/brapi-client/index.js';
+import type { RegisteredServer } from '../../services/server-registry/index.js';
+import type { BrapiDialect } from './types.js';
+export { cassavabaseDialect } from './cassavabase-dialect.js';
+export { type DialectDetection, type DialectDetectionSource, detectDialectFromName, detectDialectId, dialectEnvVar, readDialectOverride, } from './detect.js';
+export { getDialectById, initBrapiDialectRegistry, listRegisteredDialectIds, registerDialect, resetBrapiDialectRegistry, } from './registry.js';
+export { specDialect } from './spec-dialect.js';
+export type { BrapiDialect, DialectAdaptation } from './types.js';
+/**
+ * Resolve the dialect for a registered connection. Reads the env override
+ * first (`BRAPI_<ALIAS>_DIALECT`); on miss, falls back to detection from
+ * the cached capability profile. The profile lookup is the same one tools
+ * already trigger via `capabilities.ensure()` so this adds zero HTTP.
+ */
+export declare function resolveDialect(connection: RegisteredServer, ctx: Context, options?: {
+    auth?: ResolvedAuth | undefined;
+}): Promise<BrapiDialect>;
+//# sourceMappingURL=index.d.ts.map

package/dist/services/brapi-dialect/index.d.ts.map

@@ -0,0 +1 @@
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package/dist/services/brapi-dialect/index.js

@@ -0,0 +1,31 @@
+/**
+ * @fileoverview Public API for the BrAPI dialect service. Tools call
+ * `resolveDialect(connection, ctx)` to get a per-connection adapter, then
+ * `dialect.adaptGetFilters(endpoint, filters)` before serializing a GET
+ * call. Detection runs once per connection per ctx (the underlying
+ * capability profile is cached in `ctx.state`), so repeated calls are
+ * cheap.
+ *
+ * @module services/brapi-dialect
+ */
+import { getCapabilityRegistry } from '../../services/capability-registry/index.js';
+import { detectDialectId } from './detect.js';
+import { getDialectById } from './registry.js';
+export { cassavabaseDialect } from './cassavabase-dialect.js';
+export { detectDialectFromName, detectDialectId, dialectEnvVar, readDialectOverride, } from './detect.js';
+export { getDialectById, initBrapiDialectRegistry, listRegisteredDialectIds, registerDialect, resetBrapiDialectRegistry, } from './registry.js';
+export { specDialect } from './spec-dialect.js';
+/**
+ * Resolve the dialect for a registered connection. Reads the env override
+ * first (`BRAPI_<ALIAS>_DIALECT`); on miss, falls back to detection from
+ * the cached capability profile. The profile lookup is the same one tools
+ * already trigger via `capabilities.ensure()` so this adds zero HTTP.
+ */
+export async function resolveDialect(connection, ctx, options = {}) {
+    const lookup = {};
+    if (options.auth)
+        lookup.auth = options.auth;
+    const profile = await getCapabilityRegistry().profile(connection.baseUrl, ctx, lookup);
+    return getDialectById(detectDialectId(connection.alias, profile).id);
+}
+//# sourceMappingURL=index.js.map

package/dist/services/brapi-dialect/index.js.map

@@ -0,0 +1 @@
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package/dist/services/brapi-dialect/registry.d.ts

@@ -0,0 +1,25 @@
+/**
+ * @fileoverview Dialect registry — singleton map from dialect id to
+ * implementation. Initialized in `setup()` with the built-in dialects;
+ * future plugins can register additional ones before `createApp()` returns.
+ * Lookups never throw — unknown ids fall back to the `spec` dialect so a
+ * stale env override or typo can't crash a tool call mid-flight.
+ *
+ * @module services/brapi-dialect/registry
+ */
+import type { BrapiDialect } from './types.js';
+/** Register a dialect. Last-write-wins on id collision. */
+export declare function registerDialect(dialect: BrapiDialect): void;
+/**
+ * Look up a registered dialect by id. Falls back to the `spec` (passthrough)
+ * dialect when the id is unknown — keeps misconfiguration loud (the dialect
+ * still adapts its translations) while avoiding hard failures.
+ */
+export declare function getDialectById(id: string): BrapiDialect;
+/** Wire the built-in dialects. Idempotent — safe to call multiple times. */
+export declare function initBrapiDialectRegistry(): void;
+/** Test-only — clear all registrations between suites. */
+export declare function resetBrapiDialectRegistry(): void;
+/** Test-only — list registered ids. */
+export declare function listRegisteredDialectIds(): string[];
+//# sourceMappingURL=registry.d.ts.map

package/dist/services/brapi-dialect/registry.d.ts.map

@@ -0,0 +1 @@
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package/dist/services/brapi-dialect/registry.js

@@ -0,0 +1,39 @@
+/**
+ * @fileoverview Dialect registry — singleton map from dialect id to
+ * implementation. Initialized in `setup()` with the built-in dialects;
+ * future plugins can register additional ones before `createApp()` returns.
+ * Lookups never throw — unknown ids fall back to the `spec` dialect so a
+ * stale env override or typo can't crash a tool call mid-flight.
+ *
+ * @module services/brapi-dialect/registry
+ */
+import { cassavabaseDialect } from './cassavabase-dialect.js';
+import { specDialect } from './spec-dialect.js';
+const REGISTRY = new Map();
+/** Register a dialect. Last-write-wins on id collision. */
+export function registerDialect(dialect) {
+    REGISTRY.set(dialect.id, dialect);
+}
+/**
+ * Look up a registered dialect by id. Falls back to the `spec` (passthrough)
+ * dialect when the id is unknown — keeps misconfiguration loud (the dialect
+ * still adapts its translations) while avoiding hard failures.
+ */
+export function getDialectById(id) {
+    return REGISTRY.get(id) ?? specDialect;
+}
+/** Wire the built-in dialects. Idempotent — safe to call multiple times. */
+export function initBrapiDialectRegistry() {
+    REGISTRY.clear();
+    registerDialect(specDialect);
+    registerDialect(cassavabaseDialect);
+}
+/** Test-only — clear all registrations between suites. */
+export function resetBrapiDialectRegistry() {
+    REGISTRY.clear();
+}
+/** Test-only — list registered ids. */
+export function listRegisteredDialectIds() {
+    return Array.from(REGISTRY.keys()).sort();
+}
+//# sourceMappingURL=registry.js.map

package/dist/services/brapi-dialect/registry.js.map

@@ -0,0 +1 @@
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package/dist/services/brapi-dialect/spec-dialect.d.ts

@@ -0,0 +1,13 @@
+/**
+ * @fileoverview The default `spec` dialect — passes filters through verbatim.
+ * Used for any server that implements BrAPI v2.1 query-string filters as
+ * specified (the BrAPI Community Test Server, modern PIPPA / GnpIS / Reference
+ * Server deployments). Selected when no server-specific dialect matches the
+ * detected `serverInfo.serverName`, or when an operator pins
+ * `BRAPI_<ALIAS>_DIALECT=spec` to override detection.
+ *
+ * @module services/brapi-dialect/spec-dialect
+ */
+import type { BrapiDialect } from './types.js';
+export declare const specDialect: BrapiDialect;
+//# sourceMappingURL=spec-dialect.d.ts.map

package/dist/services/brapi-dialect/spec-dialect.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"spec-dialect.d.ts","sourceRoot":"","sources":["../../../src/services/brapi-dialect/spec-dialect.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAEH,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,YAAY,CAAC;AAE/C,eAAO,MAAM,WAAW,EAAE,YAKzB,CAAC"}

package/dist/services/brapi-dialect/spec-dialect.js

@@ -0,0 +1,17 @@
+/**
+ * @fileoverview The default `spec` dialect — passes filters through verbatim.
+ * Used for any server that implements BrAPI v2.1 query-string filters as
+ * specified (the BrAPI Community Test Server, modern PIPPA / GnpIS / Reference
+ * Server deployments). Selected when no server-specific dialect matches the
+ * detected `serverInfo.serverName`, or when an operator pins
+ * `BRAPI_<ALIAS>_DIALECT=spec` to override detection.
+ *
+ * @module services/brapi-dialect/spec-dialect
+ */
+export const specDialect = {
+    id: 'spec',
+    adaptGetFilters(_endpoint, filters) {
+        return { filters: { ...filters }, warnings: [] };
+    },
+};
+//# sourceMappingURL=spec-dialect.js.map

package/dist/services/brapi-dialect/spec-dialect.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"spec-dialect.js","sourceRoot":"","sources":["../../../src/services/brapi-dialect/spec-dialect.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAIH,MAAM,CAAC,MAAM,WAAW,GAAiB;IACvC,EAAE,EAAE,MAAM;IACV,eAAe,CAAC,SAAS,EAAE,OAAO;QAChC,OAAO,EAAE,OAAO,EAAE,EAAE,GAAG,OAAO,EAAE,EAAE,QAAQ,EAAE,EAAE,EAAE,CAAC;IACnD,CAAC;CACF,CAAC"}

package/dist/services/brapi-dialect/types.d.ts

@@ -0,0 +1,58 @@
+/**
+ * @fileoverview Types for BrAPI dialects — per-server adapters that translate
+ * spec-shape filters / payloads into whatever the upstream actually honors.
+ * BrAPI v2.1 normalized filter names to plural forms, but real implementations
+ * lag the spec by years. CassavaBase, BMS, GERMINATE, T3 each have their own
+ * quirks. The dialect interface is the single seam through which we adapt
+ * outbound traffic to those servers without bleeding the special cases into
+ * tool definitions.
+ *
+ * Start with one capability — `adaptGetFilters` — and add optional methods
+ * (`adaptSearchBody`, `normalizeRow`, etc.) as new quirk classes surface. Any
+ * method beyond the required core is optional so new dialects don't have to
+ * implement quirks they don't have.
+ *
+ * @module services/brapi-dialect/types
+ */
+/**
+ * Result of adapting a filter map for a specific endpoint. `filters` is the
+ * wire-shape map (what gets serialized into the URL); `warnings` are
+ * operator-facing notes about lossy conversions (multi-value array downcast,
+ * filters dropped because the server doesn't honor them, etc.).
+ */
+export interface DialectAdaptation {
+    filters: Record<string, unknown>;
+    warnings: string[];
+}
+/**
+ * Per-server filter / payload adapter. Implementations are stateless,
+ * registered by id, and selected per-connection via `resolveDialect`. The
+ * `id` should be a short, stable token (e.g. `spec`, `cassavabase`). Dialects
+ * registered later override earlier ones with the same id.
+ */
+export interface BrapiDialect {
+    /**
+     * Adapt a merged filter map for a GET list endpoint. `endpoint` is the bare
+     * resource segment (e.g. `studies`, `germplasm`) — not the path. Filters
+     * are passed as a read-only record; implementations must return a fresh
+     * object rather than mutating the input.
+     *
+     * The default `spec` dialect returns the input untouched. Server-specific
+     * dialects translate, drop, or downcast filters so the upstream receives
+     * names and shapes it actually honors.
+     */
+    adaptGetFilters(endpoint: string, filters: Readonly<Record<string, unknown>>): DialectAdaptation;
+    /**
+     * POST `/search/{noun}` routes the dialect knows are dead — advertised in
+     * `/calls` but in practice unresponsive, broken, or returning malformed
+     * envelopes. Tools that would otherwise issue an async-search call should
+     * consult this set first and route around (or fail loudly with a recovery
+     * hint) rather than hanging or returning garbage. Nouns are bare resource
+     * segments (e.g. `germplasm`, `studies`), not full paths.
+     *
+     * Omit on dialects with no known dead routes (the default `spec` dialect).
+     */
+    readonly disabledSearchEndpoints?: ReadonlySet<string>;
+    readonly id: string;
+}
+//# sourceMappingURL=types.d.ts.map

package/dist/services/brapi-dialect/types.d.ts.map

@@ -0,0 +1 @@
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package/dist/services/brapi-dialect/types.js

@@ -0,0 +1,18 @@
+/**
+ * @fileoverview Types for BrAPI dialects — per-server adapters that translate
+ * spec-shape filters / payloads into whatever the upstream actually honors.
+ * BrAPI v2.1 normalized filter names to plural forms, but real implementations
+ * lag the spec by years. CassavaBase, BMS, GERMINATE, T3 each have their own
+ * quirks. The dialect interface is the single seam through which we adapt
+ * outbound traffic to those servers without bleeding the special cases into
+ * tool definitions.
+ *
+ * Start with one capability — `adaptGetFilters` — and add optional methods
+ * (`adaptSearchBody`, `normalizeRow`, etc.) as new quirk classes surface. Any
+ * method beyond the required core is optional so new dialects don't have to
+ * implement quirks they don't have.
+ *
+ * @module services/brapi-dialect/types
+ */
+export {};
+//# sourceMappingURL=types.js.map

package/dist/services/brapi-dialect/types.js.map

@@ -0,0 +1 @@
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package/dist/services/ontology-resolver/ontology-resolver.d.ts

@@ -12,6 +12,9 @@ import type { OntologyCandidate, ResolveOptions } from './types.js';
 /**
  * Loose shape of a BrAPI observation-variable record. Every field is
  * optional because server implementations vary in what they populate.
+ * Trait subobject fields follow BrAPI v2.1 naming (`traitName`,
+ * `traitDescription`); both legacy `name` / `description` aliases are
+ * accepted for older or non-conformant servers.
  */
 export interface VariableLike {
     method?: {
@@ -28,9 +31,13 @@ export interface VariableLike {
     synonyms?: string[] | undefined;
     trait?: {
         traitClass?: string;
+        /** Legacy alias for `traitDescription` — accepted for older servers. */
         description?: string;
+        /** Legacy alias for `traitName` — accepted for older servers. */
         name?: string;
         synonyms?: string[];
+        traitDescription?: string;
+        traitName?: string;
     };
 }
 export declare class OntologyResolver {

package/dist/services/ontology-resolver/ontology-resolver.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"ontology-resolver.d.ts","sourceRoot":"","sources":["../../../src/services/ontology-resolver/ontology-resolver.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAEH,OAAO,KAAK,EAAE,iBAAiB,EAAE,cAAc,EAAE,MAAM,YAAY,CAAC;AAEpE;;;;;;GAMG;AACH,MAAM,WAAW,YAAY;IAC3B,MAAM,CAAC,EAAE;QAAE,UAAU,CAAC,EAAE,MAAM,CAAA;KAAE,CAAC;IACjC,uBAAuB,CAAC,EAAE,MAAM,CAAC;IACjC,uBAAuB,CAAC,EAAE,MAAM,CAAC;IACjC,sBAAsB,CAAC,EAAE,MAAM,CAAC;IAChC,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,KAAK,CAAC,EAAE;QAAE,SAAS,CAAC,EAAE,MAAM,CAAA;KAAE,CAAC;IAC/B,QAAQ,CAAC,EAAE,MAAM,EAAE,GAAG,SAAS,CAAC;IAChC,KAAK,CAAC,EAAE;QACN,UAAU,CAAC,EAAE,MAAM,CAAC;QACpB,wEAAwE;QACxE,WAAW,CAAC,EAAE,MAAM,CAAC;QACrB,iEAAiE;QACjE,IAAI,CAAC,EAAE,MAAM,CAAC;QACd,QAAQ,CAAC,EAAE,MAAM,EAAE,CAAC;QACpB,gBAAgB,CAAC,EAAE,MAAM,CAAC;QAC1B,SAAS,CAAC,EAAE,MAAM,CAAC;KACpB,CAAC;CACH;AAED,qBAAa,gBAAgB;IAC3B;;;;;OAKG;IACH,KAAK,CACH,KAAK,EAAE,MAAM,EACb,SAAS,EAAE,SAAS,YAAY,EAAE,EAClC,OAAO,GAAE,cAAmB,GAC3B,iBAAiB,EAAE;IAoBtB,OAAO,CAAC,QAAQ;CA8CjB;AAwBD,wBAAgB,oBAAoB,IAAI,IAAI,CAE3C;AAED,wBAAgB,mBAAmB,IAAI,gBAAgB,CAKtD;AAED,wBAAgB,qBAAqB,IAAI,IAAI,CAE5C"}

package/dist/services/ontology-resolver/ontology-resolver.js

@@ -52,7 +52,7 @@ export class OntologyResolver {
         if (traitSynonymMatch) {
             return { candidate: toCandidate(variable, 'synonymMatch'), score: 40 };
         }
-        const traitName = variable.trait?.name?.toLowerCase();
+        const traitName = (variable.trait?.traitName ?? variable.trait?.name)?.toLowerCase();
         if (traitName?.includes(query)) {
             return { candidate: toCandidate(variable, 'nameMatch'), score: 35 };
         }
@@ -60,7 +60,7 @@ export class OntologyResolver {
         if (traitClass && traitClass === query) {
             return { candidate: toCandidate(variable, 'traitClassMatch'), score: 30 };
         }
-        const traitDescription = variable.trait?.description?.toLowerCase();
+        const traitDescription = (variable.trait?.traitDescription ?? variable.trait?.description)?.toLowerCase();
         if (traitDescription?.includes(query)) {
             return { candidate: toCandidate(variable, 'nameMatch'), score: 20 };
         }
@@ -74,11 +74,12 @@ function toCandidate(variable, source) {
     }
     if (variable.observationVariablePUI)
         candidate.termId = variable.observationVariablePUI;
-    const name = variable.observationVariableName ?? variable.trait?.name;
+    const name = variable.observationVariableName ?? variable.trait?.traitName ?? variable.trait?.name;
     if (name)
         candidate.name = name;
-    if (variable.trait?.description)
-        candidate.description = variable.trait.description;
+    const description = variable.trait?.traitDescription ?? variable.trait?.description;
+    if (description)
+        candidate.description = description;
     if (variable.ontologyDbId)
         candidate.ontologyDbId = variable.ontologyDbId;
     const combinedSynonyms = [...(variable.synonyms ?? []), ...(variable.trait?.synonyms ?? [])];

package/dist/services/ontology-resolver/ontology-resolver.js.map

@@ -1 +1 @@
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+{"version":3,"file":"ontology-resolver.js","sourceRoot":"","sources":["../../../src/services/ontology-resolver/ontology-resolver.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAgCH,MAAM,OAAO,gBAAgB;IAC3B;;;;;OAKG;IACH,KAAK,CACH,KAAa,EACb,SAAkC,EAClC,UAA0B,EAAE;QAE5B,MAAM,KAAK,GAAG,OAAO,CAAC,KAAK,IAAI,EAAE,CAAC;QAClC,MAAM,UAAU,GAAG,KAAK,CAAC,IAAI,EAAE,CAAC,WAAW,EAAE,CAAC;QAE9C,IAAI,CAAC,UAAU,EAAE,CAAC;YAChB,OAAO,SAAS,CAAC,KAAK,CAAC,CAAC,EAAE,KAAK,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,WAAW,CAAC,CAAC,EAAE,WAAW,CAAC,CAAC,CAAC;QAC3E,CAAC;QAED,MAAM,MAAM,GAAsD,EAAE,CAAC;QAErE,KAAK,MAAM,QAAQ,IAAI,SAAS,EAAE,CAAC;YACjC,IAAI,OAAO,CAAC,YAAY,IAAI,QAAQ,CAAC,YAAY,KAAK,OAAO,CAAC,YAAY;gBAAE,SAAS;YACrF,MAAM,KAAK,GAAG,IAAI,CAAC,QAAQ,CAAC,QAAQ,EAAE,UAAU,CAAC,CAAC;YAClD,IAAI,KAAK;gBAAE,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;QAChC,CAAC;QAED,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,KAAK,GAAG,CAAC,CAAC,KAAK,CAAC,CAAC;QACzC,OAAO,MAAM,CAAC,KAAK,CAAC,CAAC,EAAE,KAAK,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC;IACxD,CAAC;IAEO,QAAQ,CACd,QAAsB,EACtB,KAAa;QAEb,MAAM,GAAG,GAAG,QAAQ,CAAC,sBAAsB,EAAE,WAAW,EAAE,CAAC;QAC3D,IAAI,GAAG,IAAI,GAAG,KAAK,KAAK,EAAE,CAAC;YACzB,OAAO,EAAE,SAAS,EAAE,WAAW,CAAC,QAAQ,EAAE,UAAU,CAAC,EAAE,KAAK,EAAE,GAAG,EAAE,CAAC;QACtE,CAAC;QAED,MAAM,IAAI,GAAG,QAAQ,CAAC,uBAAuB,EAAE,WAAW,EAAE,CAAC;QAC7D,IAAI,IAAI,EAAE,CAAC;YACT,IAAI,IAAI,KAAK,KAAK;gBAAE,OAAO,EAAE,SAAS,EAAE,WAAW,CAAC,QAAQ,EAAE,WAAW,CAAC,EAAE,KAAK,EAAE,EAAE,EAAE,CAAC;YACxF,IAAI,IAAI,CAAC,QAAQ,CAAC,KAAK,CAAC;gBAAE,OAAO,EAAE,SAAS,EAAE,WAAW,CAAC,QAAQ,EAAE,WAAW,CAAC,EAAE,KAAK,EAAE,EAAE,EAAE,CAAC;QAChG,CAAC;QAED,MAAM,YAAY,GAAG,QAAQ,CAAC,QAAQ,EAAE,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAC;QACrF,IAAI,YAAY,EAAE,CAAC;YACjB,OAAO,EAAE,SAAS,EAAE,WAAW,CAAC,QAAQ,EAAE,cAAc,CAAC,EAAE,KAAK,EAAE,EAAE,EAAE,CAAC;QACzE,CAAC;QAED,MAAM,iBAAiB,GAAG,QAAQ,CAAC,KAAK,EAAE,QAAQ,EAAE,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAC7D,CAAC,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,KAAK,CAAC,CAChC,CAAC;QACF,IAAI,iBAAiB,EAAE,CAAC;YACtB,OAAO,EAAE,SAAS,EAAE,WAAW,CAAC,QAAQ,EAAE,cAAc,CAAC,EAAE,KAAK,EAAE,EAAE,EAAE,CAAC;QACzE,CAAC;QAED,MAAM,SAAS,GAAG,CAAC,QAAQ,CAAC,KAAK,EAAE,SAAS,IAAI,QAAQ,CAAC,KAAK,EAAE,IAAI,CAAC,EAAE,WAAW,EAAE,CAAC;QACrF,IAAI,SAAS,EAAE,QAAQ,CAAC,KAAK,CAAC,EAAE,CAAC;YAC/B,OAAO,EAAE,SAAS,EAAE,WAAW,CAAC,QAAQ,EAAE,WAAW,CAAC,EAAE,KAAK,EAAE,EAAE,EAAE,CAAC;QACtE,CAAC;QAED,MAAM,UAAU,GAAG,QAAQ,CAAC,KAAK,EAAE,UAAU,EAAE,WAAW,EAAE,CAAC;QAC7D,IAAI,UAAU,IAAI,UAAU,KAAK,KAAK,EAAE,CAAC;YACvC,OAAO,EAAE,SAAS,EAAE,WAAW,CAAC,QAAQ,EAAE,iBAAiB,CAAC,EAAE,KAAK,EAAE,EAAE,EAAE,CAAC;QAC5E,CAAC;QAED,MAAM,gBAAgB,GAAG,CACvB,QAAQ,CAAC,KAAK,EAAE,gBAAgB,IAAI,QAAQ,CAAC,KAAK,EAAE,WAAW,CAChE,EAAE,WAAW,EAAE,CAAC;QACjB,IAAI,gBAAgB,EAAE,QAAQ,CAAC,KAAK,CAAC,EAAE,CAAC;YACtC,OAAO,EAAE,SAAS,EAAE,WAAW,CAAC,QAAQ,EAAE,WAAW,CAAC,EAAE,KAAK,EAAE,EAAE,EAAE,CAAC;QACtE,CAAC;QAED,OAAO;IACT,CAAC;CACF;AAED,SAAS,WAAW,CAClB,QAAsB,EACtB,MAAmC;IAEnC,MAAM,SAAS,GAAsB,EAAE,MAAM,EAAE,CAAC;IAChD,IAAI,QAAQ,CAAC,uBAAuB,EAAE,CAAC;QACrC,SAAS,CAAC,uBAAuB,GAAG,QAAQ,CAAC,uBAAuB,CAAC;IACvE,CAAC;IACD,IAAI,QAAQ,CAAC,sBAAsB;QAAE,SAAS,CAAC,MAAM,GAAG,QAAQ,CAAC,sBAAsB,CAAC;IACxF,MAAM,IAAI,GACR,QAAQ,CAAC,uBAAuB,IAAI,QAAQ,CAAC,KAAK,EAAE,SAAS,IAAI,QAAQ,CAAC,KAAK,EAAE,IAAI,CAAC;IACxF,IAAI,IAAI;QAAE,SAAS,CAAC,IAAI,GAAG,IAAI,CAAC;IAChC,MAAM,WAAW,GAAG,QAAQ,CAAC,KAAK,EAAE,gBAAgB,IAAI,QAAQ,CAAC,KAAK,EAAE,WAAW,CAAC;IACpF,IAAI,WAAW;QAAE,SAAS,CAAC,WAAW,GAAG,WAAW,CAAC;IACrD,IAAI,QAAQ,CAAC,YAAY;QAAE,SAAS,CAAC,YAAY,GAAG,QAAQ,CAAC,YAAY,CAAC;IAC1E,MAAM,gBAAgB,GAAG,CAAC,GAAG,CAAC,QAAQ,CAAC,QAAQ,IAAI,EAAE,CAAC,EAAE,GAAG,CAAC,QAAQ,CAAC,KAAK,EAAE,QAAQ,IAAI,EAAE,CAAC,CAAC,CAAC;IAC7F,IAAI,gBAAgB,CAAC,MAAM,GAAG,CAAC;QAAE,SAAS,CAAC,QAAQ,GAAG,KAAK,CAAC,IAAI,CAAC,IAAI,GAAG,CAAC,gBAAgB,CAAC,CAAC,CAAC;IAC5F,OAAO,SAAS,CAAC;AACnB,CAAC;AAED,IAAI,SAAuC,CAAC;AAE5C,MAAM,UAAU,oBAAoB;IAClC,SAAS,GAAG,IAAI,gBAAgB,EAAE,CAAC;AACrC,CAAC;AAED,MAAM,UAAU,mBAAmB;IACjC,IAAI,CAAC,SAAS,EAAE,CAAC;QACf,MAAM,IAAI,KAAK,CAAC,2EAA2E,CAAC,CAAC;IAC/F,CAAC;IACD,OAAO,SAAS,CAAC;AACnB,CAAC;AAED,MAAM,UAAU,qBAAqB;IACnC,SAAS,GAAG,SAAS,CAAC;AACxB,CAAC"}

package/package.json

@@ -1,7 +1,7 @@
 {
   "name": "@cyanheads/brapi-mcp-server",
   "mcpName": "io.github.cyanheads/brapi-mcp-server",
-  "version": "0.3.8",
+  "version": "0.4.1",
   "description": "BrAPI v2.1 MCP server — studies, germplasm, observations, genotypes, images, and pedigrees.",
   "author": "Casey Hand @cyanheads (https://github.com/cyanheads/brapi-mcp-server#readme)",
   "type": "module",

package/server.json

@@ -6,14 +6,14 @@
     "url": "https://github.com/cyanheads/brapi-mcp-server",
     "source": "github"
   },
-  "version": "0.3.8",
+  "version": "0.4.1",
   "packages": [
     {
       "registryType": "npm",
       "registryBaseUrl": "https://registry.npmjs.org",
       "identifier": "@cyanheads/brapi-mcp-server",
       "runtimeHint": "bun",
-      "version": "0.3.8",
+      "version": "0.4.1",
       "packageArguments": [
         { "type": "positional", "value": "run" },
         { "type": "positional", "value": "start:stdio" }
@@ -49,7 +49,7 @@
       "registryBaseUrl": "https://registry.npmjs.org",
       "identifier": "@cyanheads/brapi-mcp-server",
       "runtimeHint": "bun",
-      "version": "0.3.8",
+      "version": "0.4.1",
       "packageArguments": [
         { "type": "positional", "value": "run" },
         { "type": "positional", "value": "start:http" }