@cyanheads/brapi-mcp-server 0.3.7 → 0.3.9
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/CLAUDE.md +1 -1
- package/README.md +1 -1
- package/changelog/0.3.x/0.3.8.md +31 -0
- package/changelog/0.3.x/0.3.9.md +25 -0
- package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.js +9 -2
- package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-find-germplasm.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-find-germplasm.tool.js +61 -4
- package/dist/mcp-server/tools/definitions/brapi-find-germplasm.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-find-images.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-find-images.tool.js +42 -4
- package/dist/mcp-server/tools/definitions/brapi-find-images.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-find-locations.tool.d.ts +5 -0
- package/dist/mcp-server/tools/definitions/brapi-find-locations.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-find-locations.tool.js +95 -19
- package/dist/mcp-server/tools/definitions/brapi-find-locations.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-find-observations.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-find-observations.tool.js +46 -4
- package/dist/mcp-server/tools/definitions/brapi-find-observations.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-find-studies.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-find-studies.tool.js +51 -4
- package/dist/mcp-server/tools/definitions/brapi-find-studies.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-find-variables.tool.d.ts +1 -0
- package/dist/mcp-server/tools/definitions/brapi-find-variables.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-find-variables.tool.js +62 -7
- package/dist/mcp-server/tools/definitions/brapi-find-variables.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-find-variants.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-find-variants.tool.js +20 -4
- package/dist/mcp-server/tools/definitions/brapi-find-variants.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-get-image.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-get-image.tool.js +5 -2
- package/dist/mcp-server/tools/definitions/brapi-get-image.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-get-study.tool.d.ts +2 -1
- package/dist/mcp-server/tools/definitions/brapi-get-study.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-get-study.tool.js +23 -4
- package/dist/mcp-server/tools/definitions/brapi-get-study.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-submit-observations.tool.d.ts +1 -1
- package/dist/mcp-server/tools/definitions/brapi-submit-observations.tool.js +1 -1
- package/dist/mcp-server/tools/definitions/brapi-walk-pedigree.tool.js +27 -13
- package/dist/mcp-server/tools/definitions/brapi-walk-pedigree.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/index.d.ts +7 -0
- package/dist/mcp-server/tools/definitions/index.d.ts.map +1 -1
- package/dist/mcp-server/tools/shared/find-helpers.d.ts +90 -2
- package/dist/mcp-server/tools/shared/find-helpers.d.ts.map +1 -1
- package/dist/mcp-server/tools/shared/find-helpers.js +134 -5
- package/dist/mcp-server/tools/shared/find-helpers.js.map +1 -1
- package/dist/mcp-server/tools/shared/orientation-envelope.d.ts +5 -2
- package/dist/mcp-server/tools/shared/orientation-envelope.d.ts.map +1 -1
- package/dist/mcp-server/tools/shared/orientation-envelope.js +6 -3
- package/dist/mcp-server/tools/shared/orientation-envelope.js.map +1 -1
- package/dist/services/ontology-resolver/ontology-resolver.d.ts +7 -0
- package/dist/services/ontology-resolver/ontology-resolver.d.ts.map +1 -1
- package/dist/services/ontology-resolver/ontology-resolver.js +9 -5
- package/dist/services/ontology-resolver/ontology-resolver.js.map +1 -1
- package/dist/services/ontology-resolver/types.d.ts +6 -0
- package/dist/services/ontology-resolver/types.d.ts.map +1 -1
- package/dist/services/reference-data-cache/types.d.ts +10 -0
- package/dist/services/reference-data-cache/types.d.ts.map +1 -1
- package/package.json +1 -1
- package/server.json +3 -3
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@@ -12,6 +12,9 @@ import type { OntologyCandidate, ResolveOptions } from './types.js';
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12
12
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/**
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13
13
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* Loose shape of a BrAPI observation-variable record. Every field is
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14
14
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* optional because server implementations vary in what they populate.
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15
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+
* Trait subobject fields follow BrAPI v2.1 naming (`traitName`,
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16
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+
* `traitDescription`); both legacy `name` / `description` aliases are
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17
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+
* accepted for older or non-conformant servers.
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15
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*/
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16
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export interface VariableLike {
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17
20
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method?: {
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@@ -28,9 +31,13 @@ export interface VariableLike {
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28
31
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synonyms?: string[] | undefined;
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29
32
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trait?: {
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30
33
|
traitClass?: string;
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34
|
+
/** Legacy alias for `traitDescription` — accepted for older servers. */
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31
35
|
description?: string;
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36
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+
/** Legacy alias for `traitName` — accepted for older servers. */
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32
37
|
name?: string;
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33
38
|
synonyms?: string[];
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39
|
+
traitDescription?: string;
|
|
40
|
+
traitName?: string;
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34
41
|
};
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35
42
|
}
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36
43
|
export declare class OntologyResolver {
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@@ -1 +1 @@
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1
|
-
{"version":3,"file":"ontology-resolver.d.ts","sourceRoot":"","sources":["../../../src/services/ontology-resolver/ontology-resolver.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAEH,OAAO,KAAK,EAAE,iBAAiB,EAAE,cAAc,EAAE,MAAM,YAAY,CAAC;AAEpE
|
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1
|
+
{"version":3,"file":"ontology-resolver.d.ts","sourceRoot":"","sources":["../../../src/services/ontology-resolver/ontology-resolver.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAEH,OAAO,KAAK,EAAE,iBAAiB,EAAE,cAAc,EAAE,MAAM,YAAY,CAAC;AAEpE;;;;;;GAMG;AACH,MAAM,WAAW,YAAY;IAC3B,MAAM,CAAC,EAAE;QAAE,UAAU,CAAC,EAAE,MAAM,CAAA;KAAE,CAAC;IACjC,uBAAuB,CAAC,EAAE,MAAM,CAAC;IACjC,uBAAuB,CAAC,EAAE,MAAM,CAAC;IACjC,sBAAsB,CAAC,EAAE,MAAM,CAAC;IAChC,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,KAAK,CAAC,EAAE;QAAE,SAAS,CAAC,EAAE,MAAM,CAAA;KAAE,CAAC;IAC/B,QAAQ,CAAC,EAAE,MAAM,EAAE,GAAG,SAAS,CAAC;IAChC,KAAK,CAAC,EAAE;QACN,UAAU,CAAC,EAAE,MAAM,CAAC;QACpB,wEAAwE;QACxE,WAAW,CAAC,EAAE,MAAM,CAAC;QACrB,iEAAiE;QACjE,IAAI,CAAC,EAAE,MAAM,CAAC;QACd,QAAQ,CAAC,EAAE,MAAM,EAAE,CAAC;QACpB,gBAAgB,CAAC,EAAE,MAAM,CAAC;QAC1B,SAAS,CAAC,EAAE,MAAM,CAAC;KACpB,CAAC;CACH;AAED,qBAAa,gBAAgB;IAC3B;;;;;OAKG;IACH,KAAK,CACH,KAAK,EAAE,MAAM,EACb,SAAS,EAAE,SAAS,YAAY,EAAE,EAClC,OAAO,GAAE,cAAmB,GAC3B,iBAAiB,EAAE;IAoBtB,OAAO,CAAC,QAAQ;CA8CjB;AAwBD,wBAAgB,oBAAoB,IAAI,IAAI,CAE3C;AAED,wBAAgB,mBAAmB,IAAI,gBAAgB,CAKtD;AAED,wBAAgB,qBAAqB,IAAI,IAAI,CAE5C"}
|
|
@@ -52,7 +52,7 @@ export class OntologyResolver {
|
|
|
52
52
|
if (traitSynonymMatch) {
|
|
53
53
|
return { candidate: toCandidate(variable, 'synonymMatch'), score: 40 };
|
|
54
54
|
}
|
|
55
|
-
const traitName = variable.trait?.name?.toLowerCase();
|
|
55
|
+
const traitName = (variable.trait?.traitName ?? variable.trait?.name)?.toLowerCase();
|
|
56
56
|
if (traitName?.includes(query)) {
|
|
57
57
|
return { candidate: toCandidate(variable, 'nameMatch'), score: 35 };
|
|
58
58
|
}
|
|
@@ -60,7 +60,7 @@ export class OntologyResolver {
|
|
|
60
60
|
if (traitClass && traitClass === query) {
|
|
61
61
|
return { candidate: toCandidate(variable, 'traitClassMatch'), score: 30 };
|
|
62
62
|
}
|
|
63
|
-
const traitDescription = variable.trait?.description?.toLowerCase();
|
|
63
|
+
const traitDescription = (variable.trait?.traitDescription ?? variable.trait?.description)?.toLowerCase();
|
|
64
64
|
if (traitDescription?.includes(query)) {
|
|
65
65
|
return { candidate: toCandidate(variable, 'nameMatch'), score: 20 };
|
|
66
66
|
}
|
|
@@ -69,13 +69,17 @@ export class OntologyResolver {
|
|
|
69
69
|
}
|
|
70
70
|
function toCandidate(variable, source) {
|
|
71
71
|
const candidate = { source };
|
|
72
|
+
if (variable.observationVariableDbId) {
|
|
73
|
+
candidate.observationVariableDbId = variable.observationVariableDbId;
|
|
74
|
+
}
|
|
72
75
|
if (variable.observationVariablePUI)
|
|
73
76
|
candidate.termId = variable.observationVariablePUI;
|
|
74
|
-
const name = variable.observationVariableName ?? variable.trait?.name;
|
|
77
|
+
const name = variable.observationVariableName ?? variable.trait?.traitName ?? variable.trait?.name;
|
|
75
78
|
if (name)
|
|
76
79
|
candidate.name = name;
|
|
77
|
-
|
|
78
|
-
|
|
80
|
+
const description = variable.trait?.traitDescription ?? variable.trait?.description;
|
|
81
|
+
if (description)
|
|
82
|
+
candidate.description = description;
|
|
79
83
|
if (variable.ontologyDbId)
|
|
80
84
|
candidate.ontologyDbId = variable.ontologyDbId;
|
|
81
85
|
const combinedSynonyms = [...(variable.synonyms ?? []), ...(variable.trait?.synonyms ?? [])];
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"ontology-resolver.js","sourceRoot":"","sources":["../../../src/services/ontology-resolver/ontology-resolver.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;
|
|
1
|
+
{"version":3,"file":"ontology-resolver.js","sourceRoot":"","sources":["../../../src/services/ontology-resolver/ontology-resolver.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAgCH,MAAM,OAAO,gBAAgB;IAC3B;;;;;OAKG;IACH,KAAK,CACH,KAAa,EACb,SAAkC,EAClC,UAA0B,EAAE;QAE5B,MAAM,KAAK,GAAG,OAAO,CAAC,KAAK,IAAI,EAAE,CAAC;QAClC,MAAM,UAAU,GAAG,KAAK,CAAC,IAAI,EAAE,CAAC,WAAW,EAAE,CAAC;QAE9C,IAAI,CAAC,UAAU,EAAE,CAAC;YAChB,OAAO,SAAS,CAAC,KAAK,CAAC,CAAC,EAAE,KAAK,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,WAAW,CAAC,CAAC,EAAE,WAAW,CAAC,CAAC,CAAC;QAC3E,CAAC;QAED,MAAM,MAAM,GAAsD,EAAE,CAAC;QAErE,KAAK,MAAM,QAAQ,IAAI,SAAS,EAAE,CAAC;YACjC,IAAI,OAAO,CAAC,YAAY,IAAI,QAAQ,CAAC,YAAY,KAAK,OAAO,CAAC,YAAY;gBAAE,SAAS;YACrF,MAAM,KAAK,GAAG,IAAI,CAAC,QAAQ,CAAC,QAAQ,EAAE,UAAU,CAAC,CAAC;YAClD,IAAI,KAAK;gBAAE,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;QAChC,CAAC;QAED,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,KAAK,GAAG,CAAC,CAAC,KAAK,CAAC,CAAC;QACzC,OAAO,MAAM,CAAC,KAAK,CAAC,CAAC,EAAE,KAAK,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC;IACxD,CAAC;IAEO,QAAQ,CACd,QAAsB,EACtB,KAAa;QAEb,MAAM,GAAG,GAAG,QAAQ,CAAC,sBAAsB,EAAE,WAAW,EAAE,CAAC;QAC3D,IAAI,GAAG,IAAI,GAAG,KAAK,KAAK,EAAE,CAAC;YACzB,OAAO,EAAE,SAAS,EAAE,WAAW,CAAC,QAAQ,EAAE,UAAU,CAAC,EAAE,KAAK,EAAE,GAAG,EAAE,CAAC;QACtE,CAAC;QAED,MAAM,IAAI,GAAG,QAAQ,CAAC,uBAAuB,EAAE,WAAW,EAAE,CAAC;QAC7D,IAAI,IAAI,EAAE,CAAC;YACT,IAAI,IAAI,KAAK,KAAK;gBAAE,OAAO,EAAE,SAAS,EAAE,WAAW,CAAC,QAAQ,EAAE,WAAW,CAAC,EAAE,KAAK,EAAE,EAAE,EAAE,CAAC;YACxF,IAAI,IAAI,CAAC,QAAQ,CAAC,KAAK,CAAC;gBAAE,OAAO,EAAE,SAAS,EAAE,WAAW,CAAC,QAAQ,EAAE,WAAW,CAAC,EAAE,KAAK,EAAE,EAAE,EAAE,CAAC;QAChG,CAAC;QAED,MAAM,YAAY,GAAG,QAAQ,CAAC,QAAQ,EAAE,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAC;QACrF,IAAI,YAAY,EAAE,CAAC;YACjB,OAAO,EAAE,SAAS,EAAE,WAAW,CAAC,QAAQ,EAAE,cAAc,CAAC,EAAE,KAAK,EAAE,EAAE,EAAE,CAAC;QACzE,CAAC;QAED,MAAM,iBAAiB,GAAG,QAAQ,CAAC,KAAK,EAAE,QAAQ,EAAE,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAC7D,CAAC,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,KAAK,CAAC,CAChC,CAAC;QACF,IAAI,iBAAiB,EAAE,CAAC;YACtB,OAAO,EAAE,SAAS,EAAE,WAAW,CAAC,QAAQ,EAAE,cAAc,CAAC,EAAE,KAAK,EAAE,EAAE,EAAE,CAAC;QACzE,CAAC;QAED,MAAM,SAAS,GAAG,CAAC,QAAQ,CAAC,KAAK,EAAE,SAAS,IAAI,QAAQ,CAAC,KAAK,EAAE,IAAI,CAAC,EAAE,WAAW,EAAE,CAAC;QACrF,IAAI,SAAS,EAAE,QAAQ,CAAC,KAAK,CAAC,EAAE,CAAC;YAC/B,OAAO,EAAE,SAAS,EAAE,WAAW,CAAC,QAAQ,EAAE,WAAW,CAAC,EAAE,KAAK,EAAE,EAAE,EAAE,CAAC;QACtE,CAAC;QAED,MAAM,UAAU,GAAG,QAAQ,CAAC,KAAK,EAAE,UAAU,EAAE,WAAW,EAAE,CAAC;QAC7D,IAAI,UAAU,IAAI,UAAU,KAAK,KAAK,EAAE,CAAC;YACvC,OAAO,EAAE,SAAS,EAAE,WAAW,CAAC,QAAQ,EAAE,iBAAiB,CAAC,EAAE,KAAK,EAAE,EAAE,EAAE,CAAC;QAC5E,CAAC;QAED,MAAM,gBAAgB,GAAG,CACvB,QAAQ,CAAC,KAAK,EAAE,gBAAgB,IAAI,QAAQ,CAAC,KAAK,EAAE,WAAW,CAChE,EAAE,WAAW,EAAE,CAAC;QACjB,IAAI,gBAAgB,EAAE,QAAQ,CAAC,KAAK,CAAC,EAAE,CAAC;YACtC,OAAO,EAAE,SAAS,EAAE,WAAW,CAAC,QAAQ,EAAE,WAAW,CAAC,EAAE,KAAK,EAAE,EAAE,EAAE,CAAC;QACtE,CAAC;QAED,OAAO;IACT,CAAC;CACF;AAED,SAAS,WAAW,CAClB,QAAsB,EACtB,MAAmC;IAEnC,MAAM,SAAS,GAAsB,EAAE,MAAM,EAAE,CAAC;IAChD,IAAI,QAAQ,CAAC,uBAAuB,EAAE,CAAC;QACrC,SAAS,CAAC,uBAAuB,GAAG,QAAQ,CAAC,uBAAuB,CAAC;IACvE,CAAC;IACD,IAAI,QAAQ,CAAC,sBAAsB;QAAE,SAAS,CAAC,MAAM,GAAG,QAAQ,CAAC,sBAAsB,CAAC;IACxF,MAAM,IAAI,GACR,QAAQ,CAAC,uBAAuB,IAAI,QAAQ,CAAC,KAAK,EAAE,SAAS,IAAI,QAAQ,CAAC,KAAK,EAAE,IAAI,CAAC;IACxF,IAAI,IAAI;QAAE,SAAS,CAAC,IAAI,GAAG,IAAI,CAAC;IAChC,MAAM,WAAW,GAAG,QAAQ,CAAC,KAAK,EAAE,gBAAgB,IAAI,QAAQ,CAAC,KAAK,EAAE,WAAW,CAAC;IACpF,IAAI,WAAW;QAAE,SAAS,CAAC,WAAW,GAAG,WAAW,CAAC;IACrD,IAAI,QAAQ,CAAC,YAAY;QAAE,SAAS,CAAC,YAAY,GAAG,QAAQ,CAAC,YAAY,CAAC;IAC1E,MAAM,gBAAgB,GAAG,CAAC,GAAG,CAAC,QAAQ,CAAC,QAAQ,IAAI,EAAE,CAAC,EAAE,GAAG,CAAC,QAAQ,CAAC,KAAK,EAAE,QAAQ,IAAI,EAAE,CAAC,CAAC,CAAC;IAC7F,IAAI,gBAAgB,CAAC,MAAM,GAAG,CAAC;QAAE,SAAS,CAAC,QAAQ,GAAG,KAAK,CAAC,IAAI,CAAC,IAAI,GAAG,CAAC,gBAAgB,CAAC,CAAC,CAAC;IAC5F,OAAO,SAAS,CAAC;AACnB,CAAC;AAED,IAAI,SAAuC,CAAC;AAE5C,MAAM,UAAU,oBAAoB;IAClC,SAAS,GAAG,IAAI,gBAAgB,EAAE,CAAC;AACrC,CAAC;AAED,MAAM,UAAU,mBAAmB;IACjC,IAAI,CAAC,SAAS,EAAE,CAAC;QACf,MAAM,IAAI,KAAK,CAAC,2EAA2E,CAAC,CAAC;IAC/F,CAAC;IACD,OAAO,SAAS,CAAC;AACnB,CAAC;AAED,MAAM,UAAU,qBAAqB;IACnC,SAAS,GAAG,SAAS,CAAC;AACxB,CAAC"}
|
|
@@ -14,6 +14,12 @@ export interface OntologyCandidate {
|
|
|
14
14
|
description?: string;
|
|
15
15
|
/** Display name of the trait/variable/term. */
|
|
16
16
|
name?: string;
|
|
17
|
+
/**
|
|
18
|
+
* Server-side variable DbId of the row this candidate was scored from.
|
|
19
|
+
* Always populated when the source variable carries one; used by callers
|
|
20
|
+
* to map candidates back to rows (PUI is too sparse on real servers).
|
|
21
|
+
*/
|
|
22
|
+
observationVariableDbId?: string;
|
|
17
23
|
/** Originating ontology (e.g. "CO_334"). */
|
|
18
24
|
ontologyDbId?: string;
|
|
19
25
|
/**
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["../../../src/services/ontology-resolver/types.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH;;;;GAIG;AACH,MAAM,WAAW,iBAAiB;IAChC,uDAAuD;IACvD,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,+CAA+C;IAC/C,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,4CAA4C;IAC5C,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB;;;;;;OAMG;IACH,MAAM,EAAE,UAAU,GAAG,WAAW,GAAG,cAAc,GAAG,iBAAiB,CAAC;IACtE,yCAAyC;IACzC,QAAQ,CAAC,EAAE,MAAM,EAAE,CAAC;IACpB,kEAAkE;IAClE,MAAM,CAAC,EAAE,MAAM,CAAC;CACjB;AAED,MAAM,WAAW,cAAc;IAC7B,4CAA4C;IAC5C,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,+CAA+C;IAC/C,YAAY,CAAC,EAAE,MAAM,CAAC;CACvB"}
|
|
1
|
+
{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["../../../src/services/ontology-resolver/types.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH;;;;GAIG;AACH,MAAM,WAAW,iBAAiB;IAChC,uDAAuD;IACvD,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,+CAA+C;IAC/C,IAAI,CAAC,EAAE,MAAM,CAAC;IACd;;;;OAIG;IACH,uBAAuB,CAAC,EAAE,MAAM,CAAC;IACjC,4CAA4C;IAC5C,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB;;;;;;OAMG;IACH,MAAM,EAAE,UAAU,GAAG,WAAW,GAAG,cAAc,GAAG,iBAAiB,CAAC;IACtE,yCAAyC;IACzC,QAAQ,CAAC,EAAE,MAAM,EAAE,CAAC;IACpB,kEAAkE;IAClE,MAAM,CAAC,EAAE,MAAM,CAAC;CACjB;AAED,MAAM,WAAW,cAAc;IAC7B,4CAA4C;IAC5C,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,+CAA+C;IAC/C,YAAY,CAAC,EAAE,MAAM,CAAC;CACvB"}
|
|
@@ -30,13 +30,23 @@ export interface Trial {
|
|
|
30
30
|
export interface Location {
|
|
31
31
|
abbreviation?: string;
|
|
32
32
|
altitude?: number;
|
|
33
|
+
/** BrAPI v2 GeoJSON Feature carrying [lon, lat, alt?] in geometry.coordinates. */
|
|
34
|
+
coordinates?: {
|
|
35
|
+
type?: string;
|
|
36
|
+
geometry?: {
|
|
37
|
+
type?: string;
|
|
38
|
+
coordinates?: number[];
|
|
39
|
+
};
|
|
40
|
+
};
|
|
33
41
|
countryCode?: string;
|
|
34
42
|
countryName?: string;
|
|
35
43
|
documentationURL?: string;
|
|
44
|
+
/** Legacy WGS84 latitude — modern BrAPI v2 servers use `coordinates` instead. */
|
|
36
45
|
latitude?: number;
|
|
37
46
|
locationDbId: string;
|
|
38
47
|
locationName?: string;
|
|
39
48
|
locationType?: string;
|
|
49
|
+
/** Legacy WGS84 longitude — modern BrAPI v2 servers use `coordinates` instead. */
|
|
40
50
|
longitude?: number;
|
|
41
51
|
}
|
|
42
52
|
//# sourceMappingURL=types.d.ts.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["../../../src/services/reference-data-cache/types.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAEH,MAAM,WAAW,OAAO;IACtB,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,gBAAgB,CAAC,EAAE,MAAM,CAAC;IAC1B,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,WAAW,EAAE,MAAM,CAAC;IACpB,WAAW,CAAC,EAAE,MAAM,CAAC;CACtB;AAED,MAAM,WAAW,KAAK;IACpB,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,gBAAgB,CAAC,EAAE,MAAM,CAAC;IAC1B,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,SAAS,EAAE,MAAM,CAAC;IAClB,gBAAgB,CAAC,EAAE,MAAM,CAAC;IAC1B,SAAS,CAAC,EAAE,MAAM,CAAC;CACpB;AAED,MAAM,WAAW,QAAQ;IACvB,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,gBAAgB,CAAC,EAAE,MAAM,CAAC;IAC1B,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,YAAY,EAAE,MAAM,CAAC;IACrB,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,SAAS,CAAC,EAAE,MAAM,CAAC;CACpB"}
|
|
1
|
+
{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["../../../src/services/reference-data-cache/types.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAEH,MAAM,WAAW,OAAO;IACtB,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,gBAAgB,CAAC,EAAE,MAAM,CAAC;IAC1B,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,WAAW,EAAE,MAAM,CAAC;IACpB,WAAW,CAAC,EAAE,MAAM,CAAC;CACtB;AAED,MAAM,WAAW,KAAK;IACpB,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,gBAAgB,CAAC,EAAE,MAAM,CAAC;IAC1B,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,SAAS,EAAE,MAAM,CAAC;IAClB,gBAAgB,CAAC,EAAE,MAAM,CAAC;IAC1B,SAAS,CAAC,EAAE,MAAM,CAAC;CACpB;AAED,MAAM,WAAW,QAAQ;IACvB,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,kFAAkF;IAClF,WAAW,CAAC,EAAE;QAAE,IAAI,CAAC,EAAE,MAAM,CAAC;QAAC,QAAQ,CAAC,EAAE;YAAE,IAAI,CAAC,EAAE,MAAM,CAAC;YAAC,WAAW,CAAC,EAAE,MAAM,EAAE,CAAA;SAAE,CAAA;KAAE,CAAC;IACtF,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,gBAAgB,CAAC,EAAE,MAAM,CAAC;IAC1B,iFAAiF;IACjF,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,YAAY,EAAE,MAAM,CAAC;IACrB,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,kFAAkF;IAClF,SAAS,CAAC,EAAE,MAAM,CAAC;CACpB"}
|
package/package.json
CHANGED
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@cyanheads/brapi-mcp-server",
|
|
3
3
|
"mcpName": "io.github.cyanheads/brapi-mcp-server",
|
|
4
|
-
"version": "0.3.
|
|
4
|
+
"version": "0.3.9",
|
|
5
5
|
"description": "BrAPI v2.1 MCP server — studies, germplasm, observations, genotypes, images, and pedigrees.",
|
|
6
6
|
"author": "Casey Hand @cyanheads (https://github.com/cyanheads/brapi-mcp-server#readme)",
|
|
7
7
|
"type": "module",
|
package/server.json
CHANGED
|
@@ -6,14 +6,14 @@
|
|
|
6
6
|
"url": "https://github.com/cyanheads/brapi-mcp-server",
|
|
7
7
|
"source": "github"
|
|
8
8
|
},
|
|
9
|
-
"version": "0.3.
|
|
9
|
+
"version": "0.3.9",
|
|
10
10
|
"packages": [
|
|
11
11
|
{
|
|
12
12
|
"registryType": "npm",
|
|
13
13
|
"registryBaseUrl": "https://registry.npmjs.org",
|
|
14
14
|
"identifier": "@cyanheads/brapi-mcp-server",
|
|
15
15
|
"runtimeHint": "bun",
|
|
16
|
-
"version": "0.3.
|
|
16
|
+
"version": "0.3.9",
|
|
17
17
|
"packageArguments": [
|
|
18
18
|
{ "type": "positional", "value": "run" },
|
|
19
19
|
{ "type": "positional", "value": "start:stdio" }
|
|
@@ -49,7 +49,7 @@
|
|
|
49
49
|
"registryBaseUrl": "https://registry.npmjs.org",
|
|
50
50
|
"identifier": "@cyanheads/brapi-mcp-server",
|
|
51
51
|
"runtimeHint": "bun",
|
|
52
|
-
"version": "0.3.
|
|
52
|
+
"version": "0.3.9",
|
|
53
53
|
"packageArguments": [
|
|
54
54
|
{ "type": "positional", "value": "run" },
|
|
55
55
|
{ "type": "positional", "value": "start:http" }
|