@cyanheads/brapi-mcp-server 0.3.7 → 0.3.8

package/dist/services/ontology-resolver/ontology-resolver.js.map

@@ -1 +1 @@
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package/dist/services/ontology-resolver/types.d.ts

@@ -14,6 +14,12 @@ export interface OntologyCandidate {
     description?: string;
     /** Display name of the trait/variable/term. */
     name?: string;
+    /**
+     * Server-side variable DbId of the row this candidate was scored from.
+     * Always populated when the source variable carries one; used by callers
+     * to map candidates back to rows (PUI is too sparse on real servers).
+     */
+    observationVariableDbId?: string;
     /** Originating ontology (e.g. "CO_334"). */
     ontologyDbId?: string;
     /**

package/dist/services/ontology-resolver/types.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["../../../src/services/ontology-resolver/types.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH;;;;GAIG;AACH,MAAM,WAAW,iBAAiB;IAChC,uDAAuD;IACvD,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,+CAA+C;IAC/C,IAAI,CAAC,EAAE,MAAM,CAAC;IACd;;;;OAIG;IACH,uBAAuB,CAAC,EAAE,MAAM,CAAC;IACjC,4CAA4C;IAC5C,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB;;;;;;OAMG;IACH,MAAM,EAAE,UAAU,GAAG,WAAW,GAAG,cAAc,GAAG,iBAAiB,CAAC;IACtE,yCAAyC;IACzC,QAAQ,CAAC,EAAE,MAAM,EAAE,CAAC;IACpB,kEAAkE;IAClE,MAAM,CAAC,EAAE,MAAM,CAAC;CACjB;AAED,MAAM,WAAW,cAAc;IAC7B,4CAA4C;IAC5C,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,+CAA+C;IAC/C,YAAY,CAAC,EAAE,MAAM,CAAC;CACvB"}

package/dist/services/reference-data-cache/types.d.ts

@@ -30,13 +30,23 @@ export interface Trial {
 export interface Location {
     abbreviation?: string;
     altitude?: number;
+    /** BrAPI v2 GeoJSON Feature carrying [lon, lat, alt?] in geometry.coordinates. */
+    coordinates?: {
+        type?: string;
+        geometry?: {
+            type?: string;
+            coordinates?: number[];
+        };
+    };
     countryCode?: string;
     countryName?: string;
     documentationURL?: string;
+    /** Legacy WGS84 latitude — modern BrAPI v2 servers use `coordinates` instead. */
     latitude?: number;
     locationDbId: string;
     locationName?: string;
     locationType?: string;
+    /** Legacy WGS84 longitude — modern BrAPI v2 servers use `coordinates` instead. */
     longitude?: number;
 }
 //# sourceMappingURL=types.d.ts.map

package/dist/services/reference-data-cache/types.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["../../../src/services/reference-data-cache/types.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAEH,MAAM,WAAW,OAAO;IACtB,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,gBAAgB,CAAC,EAAE,MAAM,CAAC;IAC1B,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,WAAW,EAAE,MAAM,CAAC;IACpB,WAAW,CAAC,EAAE,MAAM,CAAC;CACtB;AAED,MAAM,WAAW,KAAK;IACpB,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,gBAAgB,CAAC,EAAE,MAAM,CAAC;IAC1B,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,SAAS,EAAE,MAAM,CAAC;IAClB,gBAAgB,CAAC,EAAE,MAAM,CAAC;IAC1B,SAAS,CAAC,EAAE,MAAM,CAAC;CACpB;AAED,MAAM,WAAW,QAAQ;IACvB,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,gBAAgB,CAAC,EAAE,MAAM,CAAC;IAC1B,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,YAAY,EAAE,MAAM,CAAC;IACrB,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,SAAS,CAAC,EAAE,MAAM,CAAC;CACpB"}
+{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["../../../src/services/reference-data-cache/types.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAEH,MAAM,WAAW,OAAO;IACtB,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,gBAAgB,CAAC,EAAE,MAAM,CAAC;IAC1B,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,WAAW,EAAE,MAAM,CAAC;IACpB,WAAW,CAAC,EAAE,MAAM,CAAC;CACtB;AAED,MAAM,WAAW,KAAK;IACpB,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,gBAAgB,CAAC,EAAE,MAAM,CAAC;IAC1B,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,SAAS,EAAE,MAAM,CAAC;IAClB,gBAAgB,CAAC,EAAE,MAAM,CAAC;IAC1B,SAAS,CAAC,EAAE,MAAM,CAAC;CACpB;AAED,MAAM,WAAW,QAAQ;IACvB,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,kFAAkF;IAClF,WAAW,CAAC,EAAE;QAAE,IAAI,CAAC,EAAE,MAAM,CAAC;QAAC,QAAQ,CAAC,EAAE;YAAE,IAAI,CAAC,EAAE,MAAM,CAAC;YAAC,WAAW,CAAC,EAAE,MAAM,EAAE,CAAA;SAAE,CAAA;KAAE,CAAC;IACtF,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,gBAAgB,CAAC,EAAE,MAAM,CAAC;IAC1B,iFAAiF;IACjF,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,YAAY,EAAE,MAAM,CAAC;IACrB,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,kFAAkF;IAClF,SAAS,CAAC,EAAE,MAAM,CAAC;CACpB"}

package/package.json

@@ -1,7 +1,7 @@
 {
   "name": "@cyanheads/brapi-mcp-server",
   "mcpName": "io.github.cyanheads/brapi-mcp-server",
-  "version": "0.3.7",
+  "version": "0.3.8",
   "description": "BrAPI v2.1 MCP server — studies, germplasm, observations, genotypes, images, and pedigrees.",
   "author": "Casey Hand @cyanheads (https://github.com/cyanheads/brapi-mcp-server#readme)",
   "type": "module",

package/server.json

@@ -6,14 +6,14 @@
     "url": "https://github.com/cyanheads/brapi-mcp-server",
     "source": "github"
   },
-  "version": "0.3.7",
+  "version": "0.3.8",
   "packages": [
     {
       "registryType": "npm",
       "registryBaseUrl": "https://registry.npmjs.org",
       "identifier": "@cyanheads/brapi-mcp-server",
       "runtimeHint": "bun",
-      "version": "0.3.7",
+      "version": "0.3.8",
       "packageArguments": [
         { "type": "positional", "value": "run" },
         { "type": "positional", "value": "start:stdio" }
@@ -49,7 +49,7 @@
       "registryBaseUrl": "https://registry.npmjs.org",
       "identifier": "@cyanheads/brapi-mcp-server",
       "runtimeHint": "bun",
-      "version": "0.3.7",
+      "version": "0.3.8",
       "packageArguments": [
         { "type": "positional", "value": "run" },
         { "type": "positional", "value": "start:http" }