@cyanheads/brapi-mcp-server 0.3.6 → 0.3.8

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (68) hide show
  1. package/CLAUDE.md +1 -1
  2. package/README.md +5 -2
  3. package/changelog/0.3.x/0.3.7.md +18 -0
  4. package/changelog/0.3.x/0.3.8.md +31 -0
  5. package/dist/config/server-config.d.ts +4 -0
  6. package/dist/config/server-config.d.ts.map +1 -1
  7. package/dist/config/server-config.js +6 -0
  8. package/dist/config/server-config.js.map +1 -1
  9. package/dist/index.js +6 -41
  10. package/dist/index.js.map +1 -1
  11. package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.d.ts.map +1 -1
  12. package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.js +9 -2
  13. package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.js.map +1 -1
  14. package/dist/mcp-server/tools/definitions/brapi-find-germplasm.tool.d.ts.map +1 -1
  15. package/dist/mcp-server/tools/definitions/brapi-find-germplasm.tool.js +61 -4
  16. package/dist/mcp-server/tools/definitions/brapi-find-germplasm.tool.js.map +1 -1
  17. package/dist/mcp-server/tools/definitions/brapi-find-images.tool.d.ts.map +1 -1
  18. package/dist/mcp-server/tools/definitions/brapi-find-images.tool.js +42 -4
  19. package/dist/mcp-server/tools/definitions/brapi-find-images.tool.js.map +1 -1
  20. package/dist/mcp-server/tools/definitions/brapi-find-locations.tool.d.ts +1 -0
  21. package/dist/mcp-server/tools/definitions/brapi-find-locations.tool.d.ts.map +1 -1
  22. package/dist/mcp-server/tools/definitions/brapi-find-locations.tool.js +64 -13
  23. package/dist/mcp-server/tools/definitions/brapi-find-locations.tool.js.map +1 -1
  24. package/dist/mcp-server/tools/definitions/brapi-find-observations.tool.d.ts.map +1 -1
  25. package/dist/mcp-server/tools/definitions/brapi-find-observations.tool.js +46 -4
  26. package/dist/mcp-server/tools/definitions/brapi-find-observations.tool.js.map +1 -1
  27. package/dist/mcp-server/tools/definitions/brapi-find-studies.tool.d.ts.map +1 -1
  28. package/dist/mcp-server/tools/definitions/brapi-find-studies.tool.js +51 -4
  29. package/dist/mcp-server/tools/definitions/brapi-find-studies.tool.js.map +1 -1
  30. package/dist/mcp-server/tools/definitions/brapi-find-variables.tool.d.ts +1 -0
  31. package/dist/mcp-server/tools/definitions/brapi-find-variables.tool.d.ts.map +1 -1
  32. package/dist/mcp-server/tools/definitions/brapi-find-variables.tool.js +62 -7
  33. package/dist/mcp-server/tools/definitions/brapi-find-variables.tool.js.map +1 -1
  34. package/dist/mcp-server/tools/definitions/brapi-find-variants.tool.d.ts.map +1 -1
  35. package/dist/mcp-server/tools/definitions/brapi-find-variants.tool.js +20 -4
  36. package/dist/mcp-server/tools/definitions/brapi-find-variants.tool.js.map +1 -1
  37. package/dist/mcp-server/tools/definitions/brapi-get-image.tool.d.ts.map +1 -1
  38. package/dist/mcp-server/tools/definitions/brapi-get-image.tool.js +5 -2
  39. package/dist/mcp-server/tools/definitions/brapi-get-image.tool.js.map +1 -1
  40. package/dist/mcp-server/tools/definitions/brapi-get-study.tool.d.ts +2 -1
  41. package/dist/mcp-server/tools/definitions/brapi-get-study.tool.d.ts.map +1 -1
  42. package/dist/mcp-server/tools/definitions/brapi-get-study.tool.js +23 -4
  43. package/dist/mcp-server/tools/definitions/brapi-get-study.tool.js.map +1 -1
  44. package/dist/mcp-server/tools/definitions/brapi-submit-observations.tool.d.ts +1 -1
  45. package/dist/mcp-server/tools/definitions/brapi-submit-observations.tool.js +1 -1
  46. package/dist/mcp-server/tools/definitions/brapi-walk-pedigree.tool.js +27 -13
  47. package/dist/mcp-server/tools/definitions/brapi-walk-pedigree.tool.js.map +1 -1
  48. package/dist/mcp-server/tools/definitions/index.d.ts +1033 -0
  49. package/dist/mcp-server/tools/definitions/index.d.ts.map +1 -0
  50. package/dist/mcp-server/tools/definitions/index.js +50 -0
  51. package/dist/mcp-server/tools/definitions/index.js.map +1 -0
  52. package/dist/mcp-server/tools/shared/find-helpers.d.ts +71 -2
  53. package/dist/mcp-server/tools/shared/find-helpers.d.ts.map +1 -1
  54. package/dist/mcp-server/tools/shared/find-helpers.js +108 -5
  55. package/dist/mcp-server/tools/shared/find-helpers.js.map +1 -1
  56. package/dist/mcp-server/tools/shared/orientation-envelope.d.ts +5 -2
  57. package/dist/mcp-server/tools/shared/orientation-envelope.d.ts.map +1 -1
  58. package/dist/mcp-server/tools/shared/orientation-envelope.js +6 -3
  59. package/dist/mcp-server/tools/shared/orientation-envelope.js.map +1 -1
  60. package/dist/services/ontology-resolver/ontology-resolver.d.ts.map +1 -1
  61. package/dist/services/ontology-resolver/ontology-resolver.js +3 -0
  62. package/dist/services/ontology-resolver/ontology-resolver.js.map +1 -1
  63. package/dist/services/ontology-resolver/types.d.ts +6 -0
  64. package/dist/services/ontology-resolver/types.d.ts.map +1 -1
  65. package/dist/services/reference-data-cache/types.d.ts +10 -0
  66. package/dist/services/reference-data-cache/types.d.ts.map +1 -1
  67. package/package.json +1 -1
  68. package/server.json +17 -3
package/server.json CHANGED
@@ -6,14 +6,14 @@
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  "url": "https://github.com/cyanheads/brapi-mcp-server",
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  "source": "github"
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  },
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- "version": "0.3.6",
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+ "version": "0.3.8",
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  "packages": [
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  {
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  "registryType": "npm",
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  "registryBaseUrl": "https://registry.npmjs.org",
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  "identifier": "@cyanheads/brapi-mcp-server",
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  "runtimeHint": "bun",
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- "version": "0.3.6",
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+ "version": "0.3.8",
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  "packageArguments": [
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  { "type": "positional", "value": "run" },
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  { "type": "positional", "value": "start:stdio" }
@@ -25,6 +25,13 @@
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  "format": "string",
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  "isRequired": false
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  },
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+ {
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+ "name": "BRAPI_ENABLE_WRITES",
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+ "description": "Opt-in flag for the write surface (brapi_submit_observations). Off by default — the tool is omitted from tools/list unless the operator opts in.",
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+ "format": "string",
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+ "isRequired": false,
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+ "default": "false"
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+ },
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  {
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  "name": "MCP_LOG_LEVEL",
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  "description": "Sets the minimum log level for output (e.g., 'debug', 'info', 'warn').",
@@ -42,7 +49,7 @@
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  "registryBaseUrl": "https://registry.npmjs.org",
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  "identifier": "@cyanheads/brapi-mcp-server",
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  "runtimeHint": "bun",
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- "version": "0.3.6",
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+ "version": "0.3.8",
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  "packageArguments": [
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  { "type": "positional", "value": "run" },
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  { "type": "positional", "value": "start:http" }
@@ -54,6 +61,13 @@
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  "format": "string",
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  "isRequired": false
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  },
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+ {
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+ "name": "BRAPI_ENABLE_WRITES",
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+ "description": "Opt-in flag for the write surface (brapi_submit_observations). Off by default — the tool is omitted from tools/list unless the operator opts in.",
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+ "format": "string",
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+ "isRequired": false,
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+ "default": "false"
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+ },
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  {
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  "name": "MCP_HTTP_HOST",
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  "description": "The hostname for the HTTP server.",