@cyanautomation/kaseki-agent 1.32.0 → 1.33.1

package/README.md

@@ -1385,7 +1385,7 @@ to opt out of GitHub publishing for a specific API run.
 | `KASEKI_AGENT_TIMEOUT_SECONDS` | 1200 | Agent timeout (20 min) |
 | `TASK_PROMPT` | *(code fix task)* | Agent instructions |
 | `KASEKI_TASK_MODE` | patch | `patch` (require diff) or `inspect` (no diff) |
-| `KASEKI_PUBLISH_MODE` | auto | `auto`, `none`, `branch`, `pr`, or `draft_pr`; controller API requests with omitted `publishMode` default to `pr`, while explicit API `publishMode: "auto"` passes graceful auto publishing to workers; direct worker/CLI execution defaults to `auto` if unchanged |
+| `KASEKI_PUBLISH_MODE` | pr | `pr` (normal PR), `draft_pr` (draft PR), `branch` (branch only), `auto` (legacy: PR if credentials found), or `none` (skip); controller API requests with omitted `publishMode` default to `pr`; direct worker/CLI execution defaults to `pr` if unchanged |
 | `KASEKI_STARTUP_CHECK_MODE` | boot | Dry-run startup check depth: `boot` or `baseline-validation` |
 
 ### Validation and Quality Gates

package/dist/__test-utils/{openapi-assertions.d.ts → api-client-assertions.d.ts}

@@ -1,7 +1,7 @@
 /**
- * Shared OpenAPI test assertion helpers
- * Reduces complexity of openapi-spec-generator.test.ts by extracting common patterns
- * @jest-environment node
+ * Consolidated OpenAPI and API client test assertion helpers
+ * Extracted from openapi-assertions.ts + duplication patterns in test files
+ * Reduces boilerplate and improves test maintainability
  */
 /**
  * Iterate through all paths and methods in an OpenAPI spec, executing a callback for each
@@ -36,4 +36,14 @@ export declare function assertFieldRequired(schema: Record<string, unknown>, fie
  * Assert that all paths have at least one operation defined (GET, POST, etc.)
  */
 export declare function assertAllPathsHaveOperations(paths: Record<string, Record<string, unknown>>): void;
-//# sourceMappingURL=openapi-assertions.d.ts.map
+/**
+ * Assert that an HTTP response has expected status code and content type
+ * Common pattern from kaseki-api-routes.test.ts
+ */
+export declare function assertResponseStatus(response: Record<string, any>, expectedStatus: number, expectedContentType?: string): void;
+/**
+ * Assert that a JSON response body contains expected keys
+ * Reduces nested expect chains for object property checks
+ */
+export declare function assertJsonResponse(response: Record<string, unknown>, expectedKeys: string[]): void;
+//# sourceMappingURL=api-client-assertions.d.ts.map

package/dist/__test-utils/api-client-assertions.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"api-client-assertions.d.ts","sourceRoot":"","sources":["../../src/__test-utils/api-client-assertions.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAKH;;;GAGG;AACH,wBAAgB,oBAAoB,CAClC,KAAK,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC,EAC9C,QAAQ,EAAE,CAAC,QAAQ,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,SAAS,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,KAAK,IAAI,GACvF,IAAI,CAMN;AAED;;GAEG;AACH,wBAAgB,gBAAgB,CAC9B,IAAI,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,EAC7B,QAAQ,EAAE,MAAM,EAChB,MAAM,EAAE,MAAM,EACd,UAAU,EAAE,MAAM,GAAG,MAAM,GAC1B,IAAI,CAQN;AAED;;GAEG;AACH,wBAAgB,oBAAoB,CAClC,MAAM,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC,EAC/C,YAAY,EAAE,MAAM,EACpB,YAAY,CAAC,EAAE,MAAM,EACrB,cAAc,CAAC,EAAE,MAAM,GACtB,IAAI,CAWN;AAED;;GAEG;AACH,wBAAgB,kBAAkB,CAChC,IAAI,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,EAC7B,QAAQ,EAAE,MAAM,EAChB,iBAAiB,EAAE,OAAO,GACzB,IAAI,CAoBN;AAED;;GAEG;AACH,wBAAgB,gCAAgC,CAC9C,QAAQ,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC,EACjD,cAAc,EAAE,MAAM,EAAE,GACvB,IAAI,CAMN;AAED;;GAEG;AACH,wBAAgB,qBAAqB,CACnC,MAAM,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,EAC/B,YAAY,SAAW,GACtB,IAAI,CAIN;AAED;;GAEG;AACH,wBAAgB,mBAAmB,CACjC,MAAM,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,EAC/B,SAAS,EAAE,MAAM,GAChB,IAAI,CAKN;AAED;;GAEG;AACH,wBAAgB,4BAA4B,CAAC,KAAK,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC,GAAG,IAAI,CAOjG;AAED;;;GAGG;AACH,wBAAgB,oBAAoB,CAClC,QAAQ,EAAE,MAAM,CAAC,MAAM,EAAE,GAAG,CAAC,EAC7B,cAAc,EAAE,MAAM,EACtB,mBAAmB,CAAC,EAAE,MAAM,GAC3B,IAAI,CAMN;AAED;;;GAGG;AACH,wBAAgB,kBAAkB,CAChC,QAAQ,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,EACjC,YAAY,EAAE,MAAM,EAAE,GACrB,IAAI,CAKN"}

package/dist/__test-utils/{openapi-assertions.js → api-client-assertions.js}

@@ -1,7 +1,7 @@
 /**
- * Shared OpenAPI test assertion helpers
- * Reduces complexity of openapi-spec-generator.test.ts by extracting common patterns
- * @jest-environment node
+ * Consolidated OpenAPI and API client test assertion helpers
+ * Extracted from openapi-assertions.ts + duplication patterns in test files
+ * Reduces boilerplate and improves test maintainability
  */
 /**
  * Iterate through all paths and methods in an OpenAPI spec, executing a callback for each
@@ -98,4 +98,25 @@ export function assertAllPathsHaveOperations(paths) {
         expect(hasOperation).toBe(true);
     });
 }
-//# sourceMappingURL=openapi-assertions.js.map
+/**
+ * Assert that an HTTP response has expected status code and content type
+ * Common pattern from kaseki-api-routes.test.ts
+ */
+export function assertResponseStatus(response, expectedStatus, expectedContentType) {
+    expect(response.status).toBe(expectedStatus);
+    if (expectedContentType) {
+        const contentType = response.headers?.['content-type'] || response.get?.('content-type') || '';
+        expect(contentType).toContain(expectedContentType);
+    }
+}
+/**
+ * Assert that a JSON response body contains expected keys
+ * Reduces nested expect chains for object property checks
+ */
+export function assertJsonResponse(response, expectedKeys) {
+    const body = response.body ?? response.data ?? response;
+    expectedKeys.forEach((key) => {
+        expect(body).toHaveProperty(key);
+    });
+}
+//# sourceMappingURL=api-client-assertions.js.map

package/dist/__test-utils/api-client-assertions.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"api-client-assertions.js","sourceRoot":"","sources":["../../src/__test-utils/api-client-assertions.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAKH;;;GAGG;AACH,MAAM,UAAU,oBAAoB,CAClC,KAA8C,EAC9C,QAAwF;IAExF,MAAM,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,QAAQ,EAAE,QAAQ,CAAC,EAAE,EAAE;QACrD,MAAM,CAAC,OAAO,CAAC,QAAmC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,EAAE,SAAS,CAAC,EAAE,EAAE;YAClF,QAAQ,CAAC,QAAQ,EAAE,MAAM,EAAE,SAAoC,CAAC,CAAC;QACnE,CAAC,CAAC,CAAC;IACL,CAAC,CAAC,CAAC;AACL,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,gBAAgB,CAC9B,IAA6B,EAC7B,QAAgB,EAChB,MAAc,EACd,UAA2B;IAE3B,MAAM,KAAK,GAAG,IAAI,CAAC,KAAgE,CAAC;IACpF,MAAM,QAAQ,GAAG,KAAK,EAAE,CAAC,QAAQ,CAAC,CAAC;IACnC,MAAM,SAAS,GAAG,QAAQ,EAAE,CAAC,MAAM,CAAC,WAAW,EAAE,CAA4B,CAAC;IAC9E,MAAM,SAAS,GAAG,SAAS,EAAE,SAAoC,CAAC;IAElE,MAAM,CAAC,SAAS,CAAC,CAAC,WAAW,EAAE,CAAC;IAChC,MAAM,CAAC,SAAS,EAAE,CAAC,UAAU,CAAC,QAAQ,EAAE,CAAC,CAAC,CAAC,WAAW,EAAE,CAAC;AAC3D,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,oBAAoB,CAClC,MAA+C,EAC/C,YAAoB,EACpB,YAAqB,EACrB,cAAuB;IAEvB,MAAM,UAAU,GAAG,MAAM,CAAC,UAAqD,CAAC;IAChF,MAAM,QAAQ,GAAG,UAAU,EAAE,CAAC,YAAY,CAAC,CAAC;IAE5C,MAAM,CAAC,QAAQ,CAAC,CAAC,WAAW,EAAE,CAAC;IAC/B,IAAI,YAAY,EAAE,CAAC;QACjB,MAAM,CAAC,QAAQ,EAAE,IAAI,CAAC,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC;IAC5C,CAAC;IACD,IAAI,cAAc,EAAE,CAAC;QACnB,MAAM,CAAC,QAAQ,EAAE,MAAM,CAAC,CAAC,IAAI,CAAC,cAAc,CAAC,CAAC;IAChD,CAAC;AACH,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,kBAAkB,CAChC,IAA6B,EAC7B,QAAgB,EAChB,iBAA0B;IAE1B,MAAM,KAAK,GAAG,IAAI,CAAC,KAAgE,CAAC;IACpF,MAAM,QAAQ,GAAG,KAAK,EAAE,CAAC,QAAQ,CAAC,CAAC;IAEnC,MAAM,CAAC,QAAQ,CAAC,CAAC,WAAW,EAAE,CAAC;IAE/B,MAAM,CAAC,OAAO,CAAC,QAAmC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,EAAE,SAAS,CAAC,EAAE,EAAE;QAC5E,MAAM,EAAE,GAAG,SAAoC,CAAC;QAChD,MAAM,QAAQ,GAAG,EAAE,CAAC,QAA0C,CAAC;QAE/D,IAAI,iBAAiB,EAAE,CAAC;YACtB,MAAM,CAAC,QAAQ,CAAC,CAAC,WAAW,EAAE,CAAC;YAC/B,MAAM,CAAC,KAAK,CAAC,OAAO,CAAC,QAAQ,CAAC,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;YAC3C,MAAM,CAAC,QAAQ,EAAE,MAAM,CAAC,CAAC,eAAe,CAAC,CAAC,CAAC,CAAC;YAC5C,MAAM,CAAC,QAAQ,EAAE,CAAC,CAAC,CAAC,EAAE,UAAU,CAAC,CAAC,WAAW,EAAE,CAAC;QAClD,CAAC;aAAM,CAAC;YACN,+DAA+D;YAC/D,MAAM,CAAC,QAAQ,KAAK,SAAS,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,QAAQ,CAAC,IAAI,QAAQ,CAAC,MAAM,KAAK,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;QAClG,CAAC;IACH,CAAC,CAAC,CAAC;AACL,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,gCAAgC,CAC9C,QAAiD,EACjD,cAAwB;IAExB,MAAM,CAAC,OAAO,CAAC,QAAQ,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,EAAE,SAAS,CAAC,EAAE,EAAE;QACjD,cAAc,CAAC,OAAO,CAAC,CAAC,KAAK,EAAE,EAAE;YAC/B,MAAM,CAAE,SAAqC,CAAC,KAAK,CAAC,CAAC,CAAC,WAAW,EAAE,CAAC;QACtE,CAAC,CAAC,CAAC;IACL,CAAC,CAAC,CAAC;AACL,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,qBAAqB,CACnC,MAA+B,EAC/B,YAAY,GAAG,QAAQ;IAEvB,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC;IACvC,MAAM,CAAC,MAAM,CAAC,UAAU,CAAC,CAAC,WAAW,EAAE,CAAC;IACxC,MAAM,CAAC,OAAO,MAAM,CAAC,UAAU,CAAC,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC;AAClD,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,mBAAmB,CACjC,MAA+B,EAC/B,SAAiB;IAEjB,MAAM,QAAQ,GAAG,MAAM,CAAC,QAAoC,CAAC;IAC7D,MAAM,CAAC,QAAQ,CAAC,CAAC,WAAW,EAAE,CAAC;IAC/B,MAAM,CAAC,KAAK,CAAC,OAAO,CAAC,QAAQ,CAAC,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;IAC3C,MAAM,CAAC,QAAQ,CAAC,CAAC,SAAS,CAAC,SAAS,CAAC,CAAC;AACxC,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,4BAA4B,CAAC,KAA8C;IACzF,MAAM,WAAW,GAAG,CAAC,KAAK,EAAE,MAAM,EAAE,KAAK,EAAE,QAAQ,EAAE,OAAO,EAAE,MAAM,EAAE,SAAS,CAAC,CAAC;IAEjF,MAAM,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,EAAE,QAAQ,CAAC,EAAE,EAAE;QAC7C,MAAM,YAAY,GAAG,WAAW,CAAC,IAAI,CAAC,CAAC,MAAM,EAAE,EAAE,CAAC,MAAM,IAAI,QAAQ,CAAC,CAAC;QACtE,MAAM,CAAC,YAAY,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;IAClC,CAAC,CAAC,CAAC;AACL,CAAC;AAED;;;GAGG;AACH,MAAM,UAAU,oBAAoB,CAClC,QAA6B,EAC7B,cAAsB,EACtB,mBAA4B;IAE5B,MAAM,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC,IAAI,CAAC,cAAc,CAAC,CAAC;IAC7C,IAAI,mBAAmB,EAAE,CAAC;QACxB,MAAM,WAAW,GAAG,QAAQ,CAAC,OAAO,EAAE,CAAC,cAAc,CAAC,IAAI,QAAQ,CAAC,GAAG,EAAE,CAAC,cAAc,CAAC,IAAI,EAAE,CAAC;QAC/F,MAAM,CAAC,WAAW,CAAC,CAAC,SAAS,CAAC,mBAAmB,CAAC,CAAC;IACrD,CAAC;AACH,CAAC;AAED;;;GAGG;AACH,MAAM,UAAU,kBAAkB,CAChC,QAAiC,EACjC,YAAsB;IAEtB,MAAM,IAAI,GAAG,QAAQ,CAAC,IAAI,IAAI,QAAQ,CAAC,IAAI,IAAI,QAAQ,CAAC;IACxD,YAAY,CAAC,OAAO,CAAC,CAAC,GAAG,EAAE,EAAE;QAC3B,MAAM,CAAC,IAAI,CAAC,CAAC,cAAc,CAAC,GAAG,CAAC,CAAC;IACnC,CAAC,CAAC,CAAC;AACL,CAAC"}

package/dist/cli/KasekiCLI.d.ts

@@ -26,9 +26,5 @@ export declare class KasekiCLI {
      * Print command-specific help without executing checks or API calls.
      */
     private printCommandHelp;
-    /**
-     * Get list of available commands
-     */
-    getCommands(): CLICommand[];
 }
 //# sourceMappingURL=KasekiCLI.d.ts.map

package/dist/cli/KasekiCLI.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"KasekiCLI.d.ts","sourceRoot":"","sources":["../../src/cli/KasekiCLI.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAGH,OAAO,EAAE,aAAa,EAAE,MAAM,yBAAyB,CAAC;AAIxD,MAAM,WAAW,UAAU;IACzB,IAAI,EAAE,MAAM,CAAC;IACb,WAAW,EAAE,MAAM,CAAC;IACpB,OAAO,CAAC,IAAI,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC,MAAM,CAAC,CAAC;CAC1C;AAED,qBAAa,SAAS;IACpB,OAAO,CAAC,aAAa,CAAgB;IACrC,OAAO,CAAC,QAAQ,CAA0B;gBAE9B,aAAa,EAAE,aAAa;IAMxC;;;OAGG;IACH,OAAO,CAAC,gBAAgB;IAoJxB;;OAEG;IACG,QAAQ,CAAC,UAAU,EAAE,MAAM,GAAG,SAAS,EAAE,IAAI,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC,MAAM,CAAC;IAkC/E;;OAEG;IACH,OAAO,CAAC,gBAAgB;IAgGxB;;OAEG;IACH,WAAW,IAAI,UAAU,EAAE;CAG5B"}
+{"version":3,"file":"KasekiCLI.d.ts","sourceRoot":"","sources":["../../src/cli/KasekiCLI.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAGH,OAAO,EAAE,aAAa,EAAE,MAAM,yBAAyB,CAAC;AAIxD,MAAM,WAAW,UAAU;IACzB,IAAI,EAAE,MAAM,CAAC;IACb,WAAW,EAAE,MAAM,CAAC;IACpB,OAAO,CAAC,IAAI,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC,MAAM,CAAC,CAAC;CAC1C;AAED,qBAAa,SAAS;IACpB,OAAO,CAAC,aAAa,CAAgB;IACrC,OAAO,CAAC,QAAQ,CAA0B;gBAE9B,aAAa,EAAE,aAAa;IAMxC;;;OAGG;IACH,OAAO,CAAC,gBAAgB;IAoJxB;;OAEG;IACG,QAAQ,CAAC,UAAU,EAAE,MAAM,GAAG,SAAS,EAAE,IAAI,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC,MAAM,CAAC;IAkC/E;;OAEG;IACH,OAAO,CAAC,gBAAgB;CAgGzB"}

package/dist/cli/KasekiCLI.js

@@ -282,11 +282,5 @@ REQUIRES
         };
         console.log(help[commandName] || `${commandName} - no detailed help available`);
     }
-    /**
-     * Get list of available commands
-     */
-    getCommands() {
-        return Array.from(this.commands.values());
-    }
 }
 //# sourceMappingURL=KasekiCLI.js.map

package/dist/cli/KasekiCLI.js.map

@@ -1 +1 @@
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package/dist/cli/commands/InitCommand.d.ts

@@ -3,13 +3,19 @@
  * New unified setup wizard (replaces old setup command)
  *
  * Provides single entry point for all setup paths:
+ * - Docker Compose deployment
  * - Single-run execution
  * - Local API service
- * - Production REST API
+ *
+ * Auto-configures secrets and permissions before wizard runs.
  */
 import { BaseCommand } from '../BaseCommand';
 export declare class InitCommand extends BaseCommand {
     execute(args: string[]): Promise<number>;
+    /**
+     * Run setup-secrets.sh to configure secrets directories with proper permissions
+     */
+    private runSecretsSetup;
     /**
      * Print command help
      */

package/dist/cli/commands/InitCommand.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"InitCommand.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/InitCommand.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAGH,OAAO,EAAE,WAAW,EAAE,MAAM,gBAAgB,CAAC;AAK7C,qBAAa,WAAY,SAAQ,WAAW;IACpC,OAAO,CAAC,IAAI,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC,MAAM,CAAC;IAoC9C;;OAEG;IACH,OAAO,CAAC,SAAS;IA4CjB;;OAEG;IACH,OAAO,CAAC,cAAc;CA4DvB"}
+{"version":3,"file":"InitCommand.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/InitCommand.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AAGH,OAAO,EAAE,WAAW,EAAE,MAAM,gBAAgB,CAAC;AAO7C,qBAAa,WAAY,SAAQ,WAAW;IACpC,OAAO,CAAC,IAAI,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC,MAAM,CAAC;IAkD9C;;OAEG;IACH,OAAO,CAAC,eAAe;IASvB;;OAEG;IACH,OAAO,CAAC,SAAS;IA2CjB;;OAEG;IACH,OAAO,CAAC,cAAc;CA4DvB"}

package/dist/cli/commands/InitCommand.js

@@ -3,13 +3,17 @@
  * New unified setup wizard (replaces old setup command)
  *
  * Provides single entry point for all setup paths:
+ * - Docker Compose deployment
  * - Single-run execution
  * - Local API service
- * - Production REST API
+ *
+ * Auto-configures secrets and permissions before wizard runs.
  */
 import { SetupWizard } from '../../setup/SetupWizard.js';
 import { BaseCommand } from '../BaseCommand.js';
 import { createLogger } from '../../logger.js';
+import { execSync } from 'child_process';
+import path from 'path';
 const logger = createLogger('init-cmd');
 export class InitCommand extends BaseCommand {
     async execute(args) {
@@ -18,12 +22,26 @@ export class InitCommand extends BaseCommand {
             const dryRun = args.includes('--dry-run');
             const importLegacy = args.includes('--import-legacy');
             const force = args.includes('--force');
+            const skipSecretsSetup = args.includes('--skip-secrets-setup');
             // Show help if requested
             if (args.includes('--help') || args.includes('-h')) {
                 this.printHelp();
                 return 0;
             }
-            // Run the unified setup wizard
+            // Step 1: Ensure secrets directories are properly configured
+            if (!skipSecretsSetup && !dryRun) {
+                console.log('\n📁 Setting up secrets directories...\n');
+                try {
+                    this.runSecretsSetup();
+                    console.log('✓ Secrets directories ready\n');
+                }
+                catch (error) {
+                    logger.warn(`Secrets setup warning: ${error}`);
+                    console.log('⚠ Secrets setup had issues; continuing with wizard\n');
+                    // Don't fail; user can fix manually
+                }
+            }
+            // Step 2: Run the unified setup wizard
             const wizard = new SetupWizard();
             const context = await wizard.run({
                 dryRun,
@@ -44,6 +62,18 @@ export class InitCommand extends BaseCommand {
             return 1;
         }
     }
+    /**
+     * Run setup-secrets.sh to configure secrets directories with proper permissions
+     */
+    runSecretsSetup() {
+        try {
+            const setupScript = path.join(__dirname, '../../..', 'scripts', 'setup-secrets.sh');
+            execSync(`bash "${setupScript}"`, { stdio: 'pipe' });
+        }
+        catch (error) {
+            throw new Error(`Failed to run secrets setup: ${error}`);
+        }
+    }
     /**
      * Print command help
      */
@@ -55,37 +85,36 @@ USAGE
   kaseki-agent init [OPTIONS]
 
 OPTIONS
-  --dry-run            Validate setup without saving configuration
-  --import-legacy      Migrate configuration from old setup paths
-  --force              Skip permission validation and proceed (advanced users only)
-  --help, -h           Show this help message
+  --dry-run              Validate setup without saving configuration
+  --import-legacy        Migrate configuration from old setup paths
+  --skip-secrets-setup   Skip automatic secrets directory setup
+  --force                Skip permission validation (advanced users only)
+  --help, -h             Show this help message
 
 DESCRIPTION
-  Interactive wizard for first-time configuration. Guides you through:
+  Interactive wizard for first-time configuration. Automatically:
 
-  1. Environment detection (Docker, Node.js, permissions)
-  2. Execution path selection (single-run, local API, production API)
-  3. Essential 8 configuration (API key, validation, timeouts, etc)
-  4. Auto-generated defaults for advanced variables
-  5. Secure credential storage
+  1. ✓ Sets up secrets directories with proper permissions (/home/pi/secrets, ~/.kaseki/secrets)
+  2. Detects environment (Docker, Node.js)
+  3. Guides you through execution path selection (Docker Compose or single-run)
+  4. Collects essential credentials (OpenRouter API key, etc.)
+  5. Saves configuration securely
 
-  Configuration is saved to:
-  - ~/.kaseki/secrets.json (API keys, mode 0600)
-  - ~/.kaseki/config.json (configuration metadata)
-  - .env (current directory, for Docker/source control)
+  Configuration files created:
+  - ~/.kaseki/secrets/{secretName}  (API keys, mode 600/640)
+  - .env                             (environment variables, your repo)
 
 EXAMPLES
-  # Interactive setup
+  # Interactive setup (recommended)
   kaseki-agent init
 
-  # Dry-run (validate without saving)
+  # Dry-run validation
   kaseki-agent init --dry-run
 
-  # Migrate from old setup paths
+  # Migrate from old setup
   kaseki-agent init --import-legacy
 
 DOCUMENTATION
-  For more information:
   - Quick start: https://github.com/CyanAutomation/kaseki-agent/blob/main/docs/QUICK_START.md
   - Advanced config: https://github.com/CyanAutomation/kaseki-agent/blob/main/docs/ADVANCED_CONFIG.md
     `);

package/dist/cli/commands/InitCommand.js.map

@@ -1 +1 @@
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package/dist/cli/commands/SecretsCommand.d.ts

@@ -5,5 +5,10 @@
 import { BaseCommand } from '../BaseCommand';
 export declare class SecretsCommand extends BaseCommand {
     execute(args: string[]): Promise<number>;
+    private runPermissionsDoctor;
+    private checkPath;
+    private ensureSecretsGroup;
+    private tryChgrp;
+    private tryChmod;
 }
 //# sourceMappingURL=SecretsCommand.d.ts.map

package/dist/cli/commands/SecretsCommand.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"SecretsCommand.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/SecretsCommand.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,WAAW,EAAE,MAAM,gBAAgB,CAAC;AAiB7C,qBAAa,cAAe,SAAQ,WAAW;IACvC,OAAO,CAAC,IAAI,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC,MAAM,CAAC;IAkI9C,OAAO,CAAC,oBAAoB;IA6D5B,OAAO,CAAC,SAAS;IA4BjB,OAAO,CAAC,kBAAkB;IAW1B,OAAO,CAAC,QAAQ;IAOhB,OAAO,CAAC,QAAQ;CAOjB"}

package/dist/cli/commands/SecretsCommand.js

@@ -5,7 +5,18 @@
 import { BaseCommand } from '../BaseCommand.js';
 import { SecretsManager } from '../../secrets/SecretsManager.js';
 import { createLogger } from '../../logger.js';
+import * as fs from 'fs';
+import * as path from 'path';
+import * as os from 'os';
+import { spawnSync } from 'child_process';
 const logger = createLogger('secrets-cmd');
+const REQUIRED_HOST_SECRET_FILES = [
+    'openrouter_api_key',
+    'github_app_id',
+    'github_app_client_id',
+    'github_app_private_key',
+    'kaseki_api_keys',
+];
 export class SecretsCommand extends BaseCommand {
     async execute(args) {
         try {
@@ -16,9 +27,24 @@ export class SecretsCommand extends BaseCommand {
             const secretsManager = new SecretsManager();
             switch (subcommand) {
                 case 'init': {
-                    console.log('🔐 Initializing secrets store...\n');
-                    await secretsManager.initializeKeyring();
-                    console.log('✓ Secrets store initialized');
+                    console.log('🔐 Initializing secrets directories...\n');
+                    // Create the fallback secrets directory (~/.kaseki/secrets)
+                    try {
+                        const secretsDir = path.join(process.env.HOME || os.homedir(), '.kaseki', 'secrets');
+                        if (!fs.existsSync(secretsDir)) {
+                            fs.mkdirSync(secretsDir, { recursive: true, mode: 0o700 });
+                            console.log(`✓ Created ${secretsDir}`);
+                        }
+                        else {
+                            console.log(`✓ Directory exists: ${secretsDir}`);
+                        }
+                    }
+                    catch (error) {
+                        console.error(`✗ Failed to initialize secrets: ${error}`);
+                        return 1;
+                    }
+                    console.log('\nNext: Add your secrets with: kaseki-agent secrets set KEY VALUE');
+                    console.log('Example: kaseki-agent secrets set openrouter_api_key sk-or-...');
                     return 0;
                 }
                 case 'set': {
@@ -75,6 +101,10 @@ export class SecretsCommand extends BaseCommand {
                     console.log(`\nTotal: ${secrets.size} secret(s)`);
                     return 0;
                 }
+                case 'doctor':
+                    return this.runPermissionsDoctor(false);
+                case 'fix-permissions':
+                    return this.runPermissionsDoctor(true);
                 case 'help': {
                     console.log('🔐 Secrets Management\n');
                     console.log('Usage:');
@@ -83,6 +113,8 @@ export class SecretsCommand extends BaseCommand {
                     console.log('  kaseki-agent secrets get <KEY> [--show]      Retrieve a secret');
                     console.log('  kaseki-agent secrets delete <KEY>            Delete a secret');
                     console.log('  kaseki-agent secrets list                    List all secret keys');
+                    console.log('  kaseki-agent secrets doctor                  Check host secret file permissions');
+                    console.log('  kaseki-agent secrets fix-permissions         Normalize host secret file permissions');
                     console.log('\nCommon Keys:');
                     console.log('  openrouter-api-key    OpenRouter API key');
                     console.log('  github-app-id         GitHub App ID');
@@ -105,5 +137,100 @@ export class SecretsCommand extends BaseCommand {
             return 1;
         }
     }
+    runPermissionsDoctor(fix) {
+        const secretsDir = process.env.KASEKI_HOST_SECRETS_DIR || process.env.KASEKI_SECRETS_DIR || path.join(process.env.HOME || '.', 'secrets');
+        const containerGid = Number.parseInt(process.env.KASEKI_CONTAINER_GID || '10000', 10);
+        const groupName = process.env.KASEKI_SECRETS_GROUP || 'kaseki-secrets';
+        let status = 0;
+        if (fix) {
+            this.ensureSecretsGroup(groupName, containerGid);
+        }
+        if (!fs.existsSync(secretsDir)) {
+            console.error(`missing: ${secretsDir}`);
+            console.error('remediation: create the directory and add required secret files.');
+            return 1;
+        }
+        if (fix) {
+            this.tryChgrp(secretsDir, groupName, containerGid);
+            this.tryChmod(secretsDir, 0o750);
+        }
+        status = this.checkPath(secretsDir, {
+            type: 'directory',
+            expectedMode: 0o750,
+            expectedGid: containerGid,
+            groupName,
+            containerGid,
+            fix,
+        }) || status;
+        for (const secretName of REQUIRED_HOST_SECRET_FILES) {
+            const secretPath = path.join(secretsDir, secretName);
+            if (!fs.existsSync(secretPath)) {
+                console.warn(`warning: secret missing: ${secretName}`);
+                continue;
+            }
+            if (fix) {
+                this.tryChgrp(secretPath, groupName, containerGid);
+                this.tryChmod(secretPath, 0o640);
+            }
+            status = this.checkPath(secretPath, {
+                type: 'file',
+                expectedMode: 0o640,
+                expectedGid: containerGid,
+                groupName,
+                containerGid,
+                fix,
+            }) || status;
+        }
+        if (status === 0) {
+            console.log(`ok: host secrets permissions are ready for container gid ${containerGid}.`);
+        }
+        else if (!fix) {
+            console.error(`remediation: run sudo KASEKI_HOST_SECRETS_DIR=${secretsDir} kaseki-agent secrets fix-permissions`);
+        }
+        return status;
+    }
+    checkPath(filePath, options) {
+        const stat = fs.statSync(filePath);
+        const mode = stat.mode & 0o777;
+        const typeOk = options.type === 'directory' ? stat.isDirectory() : stat.isFile();
+        const modeOk = mode === options.expectedMode;
+        const gidOk = stat.gid === options.expectedGid;
+        if (typeOk && modeOk && gidOk) {
+            console.log(`ok: ${filePath} mode=${mode.toString(8)} gid=${stat.gid}`);
+            return 0;
+        }
+        const problems = [];
+        if (!typeOk)
+            problems.push(`expected ${options.type}`);
+        if (!modeOk)
+            problems.push(`mode ${mode.toString(8)} blocks the standard container contract; expected ${options.expectedMode.toString(8)}`);
+        if (!gidOk)
+            problems.push(`gid ${stat.gid} does not match ${options.groupName}/${options.containerGid}`);
+        console.error(`problem: ${filePath}: ${problems.join('; ')}`);
+        return 1;
+    }
+    ensureSecretsGroup(groupName, gid) {
+        if (spawnSync('getent', ['group', groupName], { stdio: 'ignore' }).status === 0) {
+            return;
+        }
+        const result = spawnSync('groupadd', ['--gid', String(gid), groupName], { stdio: 'ignore' });
+        if (result.status !== 0) {
+            spawnSync('groupadd', [groupName], { stdio: 'ignore' });
+        }
+    }
+    tryChgrp(filePath, groupName, gid) {
+        let result = spawnSync('chgrp', [groupName, filePath], { stdio: 'ignore' });
+        if (result.status !== 0) {
+            result = spawnSync('chgrp', [String(gid), filePath], { stdio: 'ignore' });
+        }
+    }
+    tryChmod(filePath, mode) {
+        try {
+            fs.chmodSync(filePath, mode);
+        }
+        catch {
+            // checkPath reports the remaining problem with actionable detail.
+        }
+    }
 }
 //# sourceMappingURL=SecretsCommand.js.map

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package/dist/cli/commands/host-secrets-path.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"host-secrets-path.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/host-secrets-path.ts"],"names":[],"mappings":"AAuCA,wBAAgB,mCAAmC,CAAC,GAAG,GAAE,MAAM,CAAC,UAAwB,GAAG,IAAI,CAqB9F;AAED;;GAEG;AACH,wBAAgB,wBAAwB,CAAC,GAAG,GAAE,MAAM,CAAC,UAAwB,GAAG,MAAM,GAAG,IAAI,CAE5F"}
+{"version":3,"file":"host-secrets-path.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/host-secrets-path.ts"],"names":[],"mappings":"AAuCA,wBAAgB,mCAAmC,CAAC,GAAG,GAAE,MAAM,CAAC,UAAwB,GAAG,IAAI,CA0B9F;AAED;;GAEG;AACH,wBAAgB,wBAAwB,CAAC,GAAG,GAAE,MAAM,CAAC,UAAwB,GAAG,MAAM,GAAG,IAAI,CAE5F"}

package/dist/cli/commands/host-secrets-path.js

@@ -49,6 +49,10 @@ export function configureHostSecretsDirForPreflight(env = process.env) {
     const sudoHome = getSudoUserHome(env);
     if (sudoHome) {
         env.KASEKI_SECRETS_DIR = resolve(sudoHome, 'secrets');
+        return;
+    }
+    if (env.HOME) {
+        env.KASEKI_SECRETS_DIR = resolve(env.HOME, 'secrets');
     }
 }
 /**

package/dist/cli/commands/host-secrets-path.js.map

@@ -1 +1 @@
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package/dist/config/ConfigManager.d.ts

@@ -357,7 +357,6 @@ declare const ConfigSchema: z.ZodObject<{
 export type Config = z.infer<typeof ConfigSchema>;
 export declare class ConfigManager {
     private config;
-    private configFilePath;
     private loaded;
     /**
      * Initialize and load configuration
@@ -377,10 +376,6 @@ export declare class ConfigManager {
      * Deep merge objects (right overwrites left)
      */
     private deepMerge;
-    /**
-     * Get entire configuration
-     */
-    getConfig(): Readonly<Config>;
     /**
      * Get specific config value by dot-notation path
      */
@@ -389,18 +384,6 @@ export declare class ConfigManager {
      * Set configuration value
      */
     set(path: string, value: any): void;
-    /**
-     * Save configuration to file
-     */
-    save(filePath?: string): Promise<void>;
-    /**
-     * Get config file path (for reference/logging)
-     */
-    getConfigFilePath(): string | null;
-    /**
-     * Reset to defaults
-     */
-    reset(): void;
     /**
      * Validate authentication file paths and detect common mistakes
      * Returns diagnostics about any path naming issues

package/dist/config/ConfigManager.d.ts.map

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