@cubis/foundry 0.3.64 → 0.3.66

package/workflows/workflows/agent-environment-setup/platforms/claude/skills/database-optimizer/references/postgresql-tuning.md

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+# PostgreSQL Tuning
+
+> Reference for: Database Optimizer
+> Load when: PostgreSQL-specific optimizations, configuration tuning
+
+## Memory Configuration
+
+### Shared Buffers
+
+```sql
+-- Recommended: 25% of system RAM (up to 40% for dedicated DB server)
+-- For 16GB RAM server:
+ALTER SYSTEM SET shared_buffers = '4GB';
+
+-- Check current setting
+SHOW shared_buffers;
+
+-- Monitor buffer hit ratio (target: >99%)
+SELECT
+    sum(heap_blks_read) as heap_read,
+    sum(heap_blks_hit) as heap_hit,
+    round(sum(heap_blks_hit) / nullif(sum(heap_blks_hit) + sum(heap_blks_read), 0) * 100, 2) as cache_hit_ratio
+FROM pg_statio_user_tables;
+```
+
+### Work Memory
+
+```sql
+-- Per-operation memory for sorting/hashing
+-- Recommended: (Total RAM * 0.25) / max_connections
+-- For 16GB RAM, 100 connections: ~40MB
+ALTER SYSTEM SET work_mem = '40MB';
+
+-- Monitor sorts
+SELECT
+    query,
+    calls,
+    total_exec_time,
+    mean_exec_time,
+    min_exec_time,
+    max_exec_time
+FROM pg_stat_statements
+WHERE query LIKE '%ORDER BY%' OR query LIKE '%GROUP BY%'
+ORDER BY total_exec_time DESC
+LIMIT 10;
+
+-- Set per-session for large operations
+SET work_mem = '256MB';
+SELECT ... ORDER BY ... LIMIT 1000;
+RESET work_mem;
+```
+
+### Maintenance Work Memory
+
+```sql
+-- For VACUUM, CREATE INDEX, ALTER TABLE
+-- Recommended: 1-2GB for production systems
+ALTER SYSTEM SET maintenance_work_mem = '2GB';
+
+-- Autovacuum workers use proportional amount
+ALTER SYSTEM SET autovacuum_work_mem = '512MB';
+```
+
+### Effective Cache Size
+
+```sql
+-- Planner hint for available OS cache
+-- Recommended: 50-75% of total RAM
+-- For 16GB RAM:
+ALTER SYSTEM SET effective_cache_size = '12GB';
+```
+
+## Query Planner Settings
+
+### Statistics Target
+
+```sql
+-- Default is 100, increase for better estimates on complex queries
+ALTER SYSTEM SET default_statistics_target = 200;
+
+-- Per-column statistics for specific columns
+ALTER TABLE users ALTER COLUMN email SET STATISTICS 500;
+
+-- Force statistics update
+ANALYZE users;
+
+-- Check statistics quality
+SELECT
+    schemaname, tablename, attname,
+    n_distinct, correlation
+FROM pg_stats
+WHERE tablename = 'users';
+```
+
+### Parallel Query Configuration
+
+```sql
+-- Enable parallel queries
+ALTER SYSTEM SET max_parallel_workers_per_gather = 4;
+ALTER SYSTEM SET max_parallel_workers = 8;
+ALTER SYSTEM SET parallel_setup_cost = 100;
+ALTER SYSTEM SET parallel_tuple_cost = 0.01;
+
+-- Minimum rows to consider parallel execution
+ALTER SYSTEM SET min_parallel_table_scan_size = '8MB';
+ALTER SYSTEM SET min_parallel_index_scan_size = '512kB';
+
+-- Check if query uses parallel execution
+EXPLAIN (ANALYZE, BUFFERS)
+SELECT COUNT(*) FROM large_table WHERE condition = 'value';
+-- Look for "Parallel Seq Scan" or "Gather" nodes
+```
+
+### Join and Scan Methods
+
+```sql
+-- Enable all join methods (usually all enabled by default)
+ALTER SYSTEM SET enable_hashjoin = on;
+ALTER SYSTEM SET enable_mergejoin = on;
+ALTER SYSTEM SET enable_nestloop = on;
+
+-- Cost parameters (adjust based on hardware)
+ALTER SYSTEM SET random_page_cost = 1.1;  -- For SSD (default 4.0 is for HDD)
+ALTER SYSTEM SET seq_page_cost = 1.0;
+
+-- Disable methods for testing (don't do in production)
+SET enable_seqscan = off;  -- Force index usage for testing
+```
+
+## Write Performance Optimization
+
+### WAL Configuration
+
+```sql
+-- WAL write strategy
+ALTER SYSTEM SET wal_buffers = '16MB';
+ALTER SYSTEM SET wal_writer_delay = '200ms';
+
+-- Checkpoint configuration
+ALTER SYSTEM SET checkpoint_completion_target = 0.9;
+ALTER SYSTEM SET max_wal_size = '2GB';
+ALTER SYSTEM SET min_wal_size = '1GB';
+
+-- Monitor checkpoints
+SELECT
+    checkpoints_timed,
+    checkpoints_req,
+    checkpoint_write_time,
+    checkpoint_sync_time,
+    buffers_checkpoint,
+    buffers_clean,
+    buffers_backend
+FROM pg_stat_bgwriter;
+
+-- Too many requested checkpoints = increase max_wal_size
+```
+
+### Commit Delays
+
+```sql
+-- Group commits (trade latency for throughput)
+ALTER SYSTEM SET commit_delay = 10000;  -- 10ms
+ALTER SYSTEM SET commit_siblings = 5;
+
+-- Asynchronous commit (trade durability for speed)
+-- Use cautiously - risk losing recent commits on crash
+ALTER SYSTEM SET synchronous_commit = 'off';
+
+-- Or per-transaction
+BEGIN;
+SET LOCAL synchronous_commit = 'off';
+INSERT INTO logs (...) VALUES (...);
+COMMIT;
+```
+
+## VACUUM and Autovacuum
+
+### Autovacuum Configuration
+
+```sql
+-- Enable autovacuum (should always be on)
+ALTER SYSTEM SET autovacuum = on;
+
+-- Autovacuum worker settings
+ALTER SYSTEM SET autovacuum_max_workers = 4;
+ALTER SYSTEM SET autovacuum_naptime = '30s';
+
+-- Thresholds for triggering autovacuum
+ALTER SYSTEM SET autovacuum_vacuum_scale_factor = 0.1;  -- 10% dead tuples
+ALTER SYSTEM SET autovacuum_vacuum_threshold = 50;
+
+-- Analyze thresholds
+ALTER SYSTEM SET autovacuum_analyze_scale_factor = 0.05;  -- 5% changed
+ALTER SYSTEM SET autovacuum_analyze_threshold = 50;
+
+-- Per-table autovacuum settings for high-churn tables
+ALTER TABLE busy_table SET (
+    autovacuum_vacuum_scale_factor = 0.01,  -- More aggressive
+    autovacuum_vacuum_cost_delay = 2,       -- Faster vacuum
+    autovacuum_vacuum_cost_limit = 1000
+);
+```
+
+### Manual Vacuum Operations
+
+```sql
+-- Full vacuum (locks table, reclaims space)
+VACUUM FULL users;  -- Use sparingly, requires exclusive lock
+
+-- Regular vacuum (non-locking)
+VACUUM (ANALYZE, VERBOSE) users;
+
+-- Check table bloat
+SELECT
+    schemaname, tablename,
+    pg_size_pretty(pg_total_relation_size(schemaname||'.'||tablename)) as total_size,
+    pg_size_pretty(pg_relation_size(schemaname||'.'||tablename)) as table_size,
+    n_dead_tup,
+    n_live_tup,
+    round(n_dead_tup * 100.0 / NULLIF(n_live_tup + n_dead_tup, 0), 2) as dead_pct
+FROM pg_stat_user_tables
+WHERE n_live_tup > 0
+ORDER BY n_dead_tup DESC;
+
+-- Monitor autovacuum activity
+SELECT
+    schemaname, relname,
+    last_vacuum, last_autovacuum,
+    last_analyze, last_autoanalyze,
+    vacuum_count, autovacuum_count,
+    analyze_count, autoanalyze_count
+FROM pg_stat_user_tables
+ORDER BY last_autovacuum DESC NULLS LAST;
+```
+
+## Connection Pooling
+
+### Configuration
+
+```sql
+-- Max connections (keep reasonable to manage memory)
+ALTER SYSTEM SET max_connections = 200;
+
+-- Reserved connections for superuser
+ALTER SYSTEM SET superuser_reserved_connections = 3;
+
+-- Connection lifecycle
+ALTER SYSTEM SET idle_in_transaction_session_timeout = '5min';
+ALTER SYSTEM SET statement_timeout = '30s';  -- Per-query timeout
+
+-- Monitor connections
+SELECT
+    state,
+    count(*),
+    max(now() - state_change) as max_idle_time
+FROM pg_stat_activity
+WHERE state IS NOT NULL
+GROUP BY state;
+
+-- Find long-running queries
+SELECT
+    pid,
+    now() - pg_stat_activity.query_start AS duration,
+    query,
+    state
+FROM pg_stat_activity
+WHERE (now() - pg_stat_activity.query_start) > interval '5 minutes'
+  AND state != 'idle';
+```
+
+## Lock Management
+
+### Lock Monitoring
+
+```sql
+-- Check current locks
+SELECT
+    locktype,
+    relation::regclass,
+    mode,
+    granted,
+    pid,
+    pg_blocking_pids(pid) as blocked_by
+FROM pg_locks
+WHERE NOT granted
+ORDER BY relation;
+
+-- Find blocking queries
+SELECT
+    blocked_locks.pid AS blocked_pid,
+    blocked_activity.usename AS blocked_user,
+    blocking_locks.pid AS blocking_pid,
+    blocking_activity.usename AS blocking_user,
+    blocked_activity.query AS blocked_statement,
+    blocking_activity.query AS blocking_statement
+FROM pg_catalog.pg_locks blocked_locks
+JOIN pg_catalog.pg_stat_activity blocked_activity ON blocked_activity.pid = blocked_locks.pid
+JOIN pg_catalog.pg_locks blocking_locks ON blocking_locks.locktype = blocked_locks.locktype
+    AND blocking_locks.relation = blocked_locks.relation
+    AND blocking_locks.pid != blocked_locks.pid
+JOIN pg_catalog.pg_stat_activity blocking_activity ON blocking_activity.pid = blocking_locks.pid
+WHERE NOT blocked_locks.granted;
+
+-- Deadlock configuration
+ALTER SYSTEM SET deadlock_timeout = '1s';
+ALTER SYSTEM SET log_lock_waits = on;
+```
+
+## Partitioning
+
+### Range Partitioning
+
+```sql
+-- Create partitioned table
+CREATE TABLE events (
+    id BIGSERIAL,
+    event_type VARCHAR(50),
+    created_at TIMESTAMP NOT NULL,
+    data JSONB
+) PARTITION BY RANGE (created_at);
+
+-- Create partitions
+CREATE TABLE events_2024_01 PARTITION OF events
+    FOR VALUES FROM ('2024-01-01') TO ('2024-02-01');
+
+CREATE TABLE events_2024_02 PARTITION OF events
+    FOR VALUES FROM ('2024-02-01') TO ('2024-03-01');
+
+-- Create indexes on partitions
+CREATE INDEX idx_events_2024_01_type ON events_2024_01(event_type);
+CREATE INDEX idx_events_2024_02_type ON events_2024_02(event_type);
+
+-- Query uses partition pruning
+EXPLAIN (ANALYZE)
+SELECT * FROM events
+WHERE created_at >= '2024-01-15' AND created_at < '2024-01-20';
+-- Should show "Partitions pruned: X"
+```
+
+## Performance Monitoring
+
+### Key Metrics Queries
+
+```sql
+-- pg_stat_statements (install extension first)
+CREATE EXTENSION IF NOT EXISTS pg_stat_statements;
+
+-- Top slow queries
+SELECT
+    round(total_exec_time::numeric, 2) as total_time,
+    calls,
+    round(mean_exec_time::numeric, 2) as mean_time,
+    round((100 * total_exec_time / sum(total_exec_time) OVER ())::numeric, 2) as pct,
+    query
+FROM pg_stat_statements
+ORDER BY total_exec_time DESC
+LIMIT 10;
+
+-- Cache hit ratio by table
+SELECT
+    schemaname,
+    tablename,
+    heap_blks_hit,
+    heap_blks_read,
+    round(100.0 * heap_blks_hit / NULLIF(heap_blks_hit + heap_blks_read, 0), 2) as cache_hit_pct
+FROM pg_statio_user_tables
+WHERE heap_blks_hit + heap_blks_read > 0
+ORDER BY heap_blks_read DESC;
+
+-- Index usage statistics
+SELECT
+    schemaname,
+    tablename,
+    indexname,
+    idx_scan,
+    idx_tup_read,
+    idx_tup_fetch,
+    pg_size_pretty(pg_relation_size(indexrelid)) as size
+FROM pg_stat_user_indexes
+ORDER BY idx_scan DESC;
+```
+
+## Configuration File Example
+
+```ini
+# postgresql.conf - Production optimized for 16GB RAM server
+
+# Memory
+shared_buffers = 4GB
+effective_cache_size = 12GB
+work_mem = 40MB
+maintenance_work_mem = 2GB
+
+# WAL
+wal_buffers = 16MB
+checkpoint_completion_target = 0.9
+max_wal_size = 2GB
+
+# Query Planner
+default_statistics_target = 200
+random_page_cost = 1.1  # SSD
+effective_io_concurrency = 200  # SSD
+
+# Parallel Queries
+max_parallel_workers_per_gather = 4
+max_parallel_workers = 8
+
+# Connections
+max_connections = 200
+
+# Logging
+log_min_duration_statement = 1000  # Log queries > 1s
+log_line_prefix = '%t [%p]: [%l-1] user=%u,db=%d,app=%a,client=%h '
+log_checkpoints = on
+log_lock_waits = on

package/workflows/workflows/agent-environment-setup/platforms/claude/skills/database-optimizer/references/query-optimization.md

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+# Query Optimization
+
+> Reference for: Database Optimizer
+> Load when: Analyzing slow queries, execution plans, query rewrites
+
+## Execution Plan Analysis
+
+### PostgreSQL EXPLAIN ANALYZE
+
+```sql
+-- Get actual execution statistics
+EXPLAIN (ANALYZE, BUFFERS, VERBOSE, TIMING)
+SELECT u.id, u.name, COUNT(o.id) as order_count
+FROM users u
+LEFT JOIN orders o ON u.id = o.user_id
+WHERE u.created_at > NOW() - INTERVAL '30 days'
+GROUP BY u.id, u.name
+HAVING COUNT(o.id) > 5;
+
+-- Key metrics to examine:
+-- 1. Actual time vs Planning time
+-- 2. Rows estimate vs Actual rows (cardinality)
+-- 3. Buffers (shared hits vs reads)
+-- 4. Sequential Scans vs Index Scans
+-- 5. Join methods (Nested Loop, Hash Join, Merge Join)
+```
+
+### MySQL EXPLAIN
+
+```sql
+-- Basic execution plan
+EXPLAIN SELECT * FROM orders
+WHERE user_id = 123 AND status = 'pending';
+
+-- JSON format for detailed analysis
+EXPLAIN FORMAT=JSON
+SELECT u.name, o.total
+FROM users u
+INNER JOIN orders o ON u.id = o.user_id
+WHERE o.created_at > '2024-01-01';
+
+-- Analyze actual execution (MySQL 8.0+)
+EXPLAIN ANALYZE
+SELECT * FROM products
+WHERE category_id = 5
+ORDER BY price DESC
+LIMIT 10;
+```
+
+### MongoDB Explain
+
+```javascript
+// Query explain
+db.orders.find({ userId: 123, status: "pending" }).explain("executionStats");
+
+// Aggregation explain
+db.orders
+  .explain("executionStats")
+  .aggregate([
+    {
+      $match: {
+        status: "completed",
+        createdAt: { $gte: ISODate("2024-01-01") },
+      },
+    },
+    { $group: { _id: "$userId", total: { $sum: "$total" } } },
+    { $sort: { total: -1 } },
+    { $limit: 20 },
+  ]);
+```
+
+## Query Rewriting Patterns
+
+## MongoDB Query Optimization Patterns
+
+### Aggregation Pipeline Ordering
+
+```javascript
+// BEFORE - expensive stages too early
+db.events.aggregate([
+  {
+    $lookup: {
+      from: "users",
+      localField: "userId",
+      foreignField: "_id",
+      as: "user",
+    },
+  },
+  { $match: { type: "click", createdAt: { $gte: ISODate("2024-01-01") } } },
+]);
+
+// AFTER - filter early, reduce data before lookup
+db.events.aggregate([
+  { $match: { type: "click", createdAt: { $gte: ISODate("2024-01-01") } } },
+  { $project: { userId: 1, createdAt: 1 } },
+  {
+    $lookup: {
+      from: "users",
+      localField: "userId",
+      foreignField: "_id",
+      as: "user",
+    },
+  },
+]);
+```
+
+### Projection and Limit
+
+```javascript
+// Project only needed fields
+db.users.find({ active: true }, { email: 1, name: 1, _id: 0 }).limit(50);
+```
+
+### Eliminate Subqueries
+
+```sql
+-- BEFORE (Slow - executes subquery for each row)
+SELECT *
+FROM orders o
+WHERE total > (
+    SELECT AVG(total)
+    FROM orders
+    WHERE user_id = o.user_id
+);
+
+-- AFTER (Fast - single join with window function)
+WITH user_averages AS (
+    SELECT user_id, AVG(total) as avg_total
+    FROM orders
+    GROUP BY user_id
+)
+SELECT o.*
+FROM orders o
+INNER JOIN user_averages ua ON o.user_id = ua.user_id
+WHERE o.total > ua.avg_total;
+```
+
+### Optimize JOIN Order
+
+```sql
+-- BEFORE (Cartesian product then filter)
+SELECT p.name, c.name, s.stock
+FROM products p, categories c, stock s
+WHERE p.category_id = c.id
+  AND p.id = s.product_id
+  AND c.active = true;
+
+-- AFTER (Filter first, then join)
+SELECT p.name, c.name, s.stock
+FROM categories c
+INNER JOIN products p ON p.category_id = c.id
+INNER JOIN stock s ON s.product_id = p.id
+WHERE c.active = true;
+```
+
+### Use EXISTS Instead of IN
+
+```sql
+-- BEFORE (Slow - materializes entire subquery)
+SELECT * FROM users
+WHERE id IN (
+    SELECT DISTINCT user_id
+    FROM orders
+    WHERE total > 1000
+);
+
+-- AFTER (Fast - short-circuits on first match)
+SELECT * FROM users u
+WHERE EXISTS (
+    SELECT 1 FROM orders o
+    WHERE o.user_id = u.id
+    AND o.total > 1000
+);
+```
+
+### Optimize DISTINCT
+
+```sql
+-- BEFORE (Sorts entire result set)
+SELECT DISTINCT u.email
+FROM users u
+INNER JOIN orders o ON u.id = o.user_id
+WHERE o.status = 'completed';
+
+-- AFTER (Uses index for uniqueness)
+SELECT u.email
+FROM users u
+WHERE EXISTS (
+    SELECT 1 FROM orders o
+    WHERE o.user_id = u.id
+    AND o.status = 'completed'
+);
+```
+
+## CTE Optimization
+
+### Materialized vs Inline CTEs
+
+```sql
+-- PostgreSQL: Force materialization for reuse
+WITH expensive_calculation AS MATERIALIZED (
+    SELECT user_id,
+           SUM(total) as lifetime_value,
+           COUNT(*) as order_count
+    FROM orders
+    WHERE created_at > NOW() - INTERVAL '1 year'
+    GROUP BY user_id
+)
+SELECT *
+FROM expensive_calculation
+WHERE lifetime_value > 10000
+   OR order_count > 50;
+
+-- Force inline for single-use CTEs
+WITH recent_users AS NOT MATERIALIZED (
+    SELECT id FROM users
+    WHERE created_at > NOW() - INTERVAL '7 days'
+)
+SELECT * FROM recent_users;
+```
+
+## Window Function Optimization
+
+```sql
+-- BEFORE (Multiple subqueries)
+SELECT
+    o.id,
+    o.total,
+    (SELECT MAX(total) FROM orders WHERE user_id = o.user_id) as max_total,
+    (SELECT AVG(total) FROM orders WHERE user_id = o.user_id) as avg_total
+FROM orders o;
+
+-- AFTER (Single window function scan)
+SELECT
+    id,
+    total,
+    MAX(total) OVER (PARTITION BY user_id) as max_total,
+    AVG(total) OVER (PARTITION BY user_id) as avg_total
+FROM orders;
+```
+
+## Aggregation Strategies
+
+### Partial Aggregation
+
+```sql
+-- For large cardinality groups, pre-aggregate
+WITH daily_stats AS (
+    SELECT
+        DATE(created_at) as day,
+        user_id,
+        COUNT(*) as daily_orders,
+        SUM(total) as daily_total
+    FROM orders
+    WHERE created_at > NOW() - INTERVAL '90 days'
+    GROUP BY DATE(created_at), user_id
+)
+SELECT
+    user_id,
+    SUM(daily_orders) as total_orders,
+    AVG(daily_total) as avg_daily_total
+FROM daily_stats
+GROUP BY user_id;
+```
+
+## Pagination Optimization
+
+```sql
+-- BEFORE (Slow on large offsets)
+SELECT * FROM products
+ORDER BY created_at DESC
+LIMIT 20 OFFSET 10000;
+
+-- AFTER (Keyset pagination - cursor-based)
+SELECT * FROM products
+WHERE created_at < '2024-01-01 12:00:00'
+   OR (created_at = '2024-01-01 12:00:00' AND id < 12345)
+ORDER BY created_at DESC, id DESC
+LIMIT 20;
+
+-- Create index for keyset pagination
+CREATE INDEX idx_products_pagination
+ON products (created_at DESC, id DESC);
+```
+
+## Query Pattern Red Flags
+
+| Pattern                    | Issue                         | Solution                                                      |
+| -------------------------- | ----------------------------- | ------------------------------------------------------------- |
+| `SELECT *`                 | Fetches unnecessary columns   | Select only needed columns                                    |
+| `OR` conditions            | Prevents index usage          | Use UNION or separate queries                                 |
+| `LIKE '%term%'`            | Full table scan               | Use full-text search or trigram indexes                       |
+| `WHERE DATE(column) = ...` | Function prevents index usage | Use range: `column >= '2024-01-01' AND column < '2024-01-02'` |
+| Large `IN` lists           | Inefficient for >100 items    | Use temporary table or JOIN                                   |
+| Implicit type conversion   | Prevents index usage          | Match column data types exactly                               |
+
+## Performance Validation
+
+```sql
+-- PostgreSQL: Compare query performance
+EXPLAIN (ANALYZE, BUFFERS)
+-- your query here
+
+-- Check buffer cache hits
+SELECT
+    sum(heap_blks_read) as heap_read,
+    sum(heap_blks_hit) as heap_hit,
+    sum(heap_blks_hit) / (sum(heap_blks_hit) + sum(heap_blks_read)) as ratio
+FROM pg_statio_user_tables;
+
+-- MySQL: Check handler statistics
+SHOW STATUS LIKE 'Handler%';
+FLUSH STATUS;
+-- run your query
+SHOW STATUS LIKE 'Handler%';
+```