@ctxo/cli 0.12.0 → 0.13.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
@@ -9,22 +9,8 @@ import { join, relative } from "path";
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  // src/core/types.ts
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  import { z } from "zod";
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- var SYMBOL_KINDS = [
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- "function",
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- "class",
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- "interface",
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- "method",
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- "variable",
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- "type"
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- ];
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+ import { SYMBOL_KINDS, EDGE_KINDS, FACT_KINDS } from "@ctxo/plugin-api";
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  var SymbolKindSchema = z.enum(SYMBOL_KINDS);
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- var EDGE_KINDS = [
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- "imports",
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- "calls",
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- "extends",
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- "implements",
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- "uses"
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- ];
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  var EdgeKindSchema = z.enum(EDGE_KINDS);
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  var DetailLevelSchema = z.union([
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  z.literal(1),
@@ -52,6 +38,11 @@ var EdgeTargetSchema = z.string().refine(
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  },
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  { message: "edge target must be <file>::<name>::<kind> or <name>::<kind>" }
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  );
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+ var SymbolAnnotationSchema = z.object({
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+ name: z.string().min(1),
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+ args: z.array(z.string()).readonly().optional(),
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+ named: z.record(z.string(), z.string()).readonly().optional()
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+ });
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  var SymbolNodeSchema = z.object({
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  symbolId: SymbolIdSchema,
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  name: z.string().min(1),
@@ -59,7 +50,8 @@ var SymbolNodeSchema = z.object({
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  startLine: z.number().int().nonnegative(),
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  endLine: z.number().int().nonnegative(),
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  startOffset: z.number().int().nonnegative().optional(),
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- endOffset: z.number().int().nonnegative().optional()
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+ endOffset: z.number().int().nonnegative().optional(),
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+ annotations: z.array(SymbolAnnotationSchema).readonly().optional()
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  }).refine((node) => node.endLine >= node.startLine, {
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  message: "endLine must be >= startLine"
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  });
@@ -82,6 +74,14 @@ var AntiPatternSchema = z.object({
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  message: z.string(),
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  date: z.string().min(1)
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  });
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+ var FactKindSchema = z.enum(FACT_KINDS);
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+ var CodeFactSchema = z.object({
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+ kind: FactKindSchema,
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+ symbolId: SymbolIdSchema,
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+ line: z.number().int().nonnegative(),
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+ text: z.string(),
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+ detail: z.record(z.string(), z.string()).readonly().optional()
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+ });
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  var ComplexityMetricsSchema = z.object({
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  symbolId: z.string().min(1),
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  cyclomatic: z.number().nonnegative()
@@ -94,17 +94,56 @@ var FileIndexSchema = z.object({
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  edges: z.array(GraphEdgeSchema),
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  complexity: z.array(ComplexityMetricsSchema).optional(),
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  intent: z.array(CommitIntentSchema),
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- antiPatterns: z.array(AntiPatternSchema)
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+ antiPatterns: z.array(AntiPatternSchema),
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+ facts: z.array(CodeFactSchema).readonly().optional()
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+ });
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+ var CoChangeEntrySchema = z.object({
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+ file1: z.string().min(1),
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+ file2: z.string().min(1),
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+ sharedCommits: z.number().int().min(1),
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+ frequency: z.number().min(0).max(1)
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+ });
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+ var CoChangeWindowMetaSchema = z.object({
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+ maxCommits: z.union([z.number().int().min(1), z.literal("all")]),
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+ since: z.string().optional(),
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+ head: z.string().min(1),
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+ commitsScanned: z.number().int().min(0),
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+ commitsUsed: z.number().int().min(0),
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+ massSkipped: z.number().int().min(0),
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+ maxFilesPerCommit: z.number().int().min(1),
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+ minShared: z.number().int().min(1)
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+ });
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+ var CoChangeMatrixSchema = z.object({
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+ version: z.literal(1),
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+ timestamp: z.number(),
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+ window: CoChangeWindowMetaSchema.optional(),
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+ entries: z.array(CoChangeEntrySchema)
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  });
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  // src/adapters/storage/json-index-reader.ts
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  var log = createLogger("ctxo:json-reader");
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+ var INDEX_ARTIFACT_FILES = [
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+ "co-changes.json",
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+ "communities.json",
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+ "drift-events.json",
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+ "boundary-violations.json",
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+ "contexts-view.json"
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+ ];
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+ var COMMUNITY_HISTORY_DIR = "communities.history";
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  var JsonIndexReader = class {
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  indexDir;
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  constructor(ctxoRoot) {
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  this.indexDir = join(ctxoRoot, "index");
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  }
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  readAll() {
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+ return this.readEntries().map((entry) => entry.index);
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+ }
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+ /**
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+ * Every valid index entry together with the path of the JSON file it came from. A caller that wants to
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+ * delete an entry must use this path: the `file` field inside the JSON says which source file the entry
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+ * is for, but a corrupt or crafted file can claim any name, such as an artifact's.
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+ */
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+ readEntries() {
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  if (!existsSync(this.indexDir)) {
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  return [];
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  }
@@ -113,7 +152,7 @@ var JsonIndexReader = class {
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  for (const filePath of jsonFiles) {
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  const parsed = this.readSingle(filePath);
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  if (parsed) {
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- results.push(parsed);
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+ results.push({ path: filePath, index: parsed });
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  }
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  }
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  return results;
@@ -138,17 +177,35 @@ var JsonIndexReader = class {
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  const rawEdges = Array.isArray(raw_data["edges"]) ? raw_data["edges"] : [];
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  const rawIntent = Array.isArray(raw_data["intent"]) ? raw_data["intent"] : [];
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  const rawAntiPatterns = Array.isArray(raw_data["antiPatterns"]) ? raw_data["antiPatterns"] : [];
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- const validSymbols = rawSymbols.filter((s) => SymbolNodeSchema.safeParse(s).success);
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+ let droppedAnnotations = 0;
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+ const validSymbols = [];
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+ for (const sym of rawSymbols) {
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+ if (SymbolNodeSchema.safeParse(sym).success) {
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+ validSymbols.push(sym);
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+ continue;
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+ }
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+ if (sym !== null && typeof sym === "object" && "annotations" in sym) {
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+ const { annotations: _dropped, ...withoutAnnotations } = sym;
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+ if (SymbolNodeSchema.safeParse(withoutAnnotations).success) {
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+ validSymbols.push(withoutAnnotations);
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+ droppedAnnotations++;
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+ }
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+ }
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+ }
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+ const factsPresent = raw_data["facts"] !== void 0;
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+ const rawFacts = Array.isArray(raw_data["facts"]) ? raw_data["facts"] : void 0;
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+ const validFacts = rawFacts?.filter((f) => CodeFactSchema.safeParse(f).success);
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  const validEdges = rawEdges.filter((e) => GraphEdgeSchema.safeParse(e).success);
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  const validIntent = rawIntent.filter((i) => CommitIntentSchema.safeParse(i).success);
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  const validAntiPatterns = rawAntiPatterns.filter((a) => AntiPatternSchema.safeParse(a).success);
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  const droppedSymbols = rawSymbols.length - validSymbols.length;
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+ const droppedFacts = rawFacts && validFacts ? rawFacts.length - validFacts.length : factsPresent ? 1 : 0;
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  const droppedEdges = rawEdges.length - validEdges.length;
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  const droppedIntent = rawIntent.length - validIntent.length;
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  const droppedAntiPatterns = rawAntiPatterns.length - validAntiPatterns.length;
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- if (droppedSymbols > 0 || droppedEdges > 0 || droppedIntent > 0 || droppedAntiPatterns > 0) {
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+ if (droppedSymbols > 0 || droppedEdges > 0 || droppedIntent > 0 || droppedAntiPatterns > 0 || droppedAnnotations > 0 || droppedFacts > 0) {
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  log.warn(
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- `${rel}: dropped ${droppedSymbols} invalid symbol(s), ${droppedEdges} invalid edge(s), ${droppedIntent} invalid intent(s), ${droppedAntiPatterns} invalid antiPattern(s) \u2014 kept ${validSymbols.length} symbol(s), ${validEdges.length} edge(s), ${validIntent.length} intent(s), ${validAntiPatterns.length} antiPattern(s)`
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+ `${rel}: dropped ${droppedSymbols} invalid symbol(s), ${droppedEdges} invalid edge(s), ${droppedIntent} invalid intent(s), ${droppedAntiPatterns} invalid antiPattern(s), ${droppedAnnotations} invalid annotation list(s), ${droppedFacts} invalid fact(s); kept ${validSymbols.length} symbol(s), ${validEdges.length} edge(s), ${validIntent.length} intent(s), ${validAntiPatterns.length} antiPattern(s)`
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  );
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  }
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  const recovered = FileIndexSchema.safeParse({
@@ -156,7 +213,8 @@ var JsonIndexReader = class {
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  symbols: validSymbols,
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  edges: validEdges,
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  intent: validIntent,
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- antiPatterns: validAntiPatterns
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+ antiPatterns: validAntiPatterns,
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+ facts: validFacts
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  });
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  if (!recovered.success) {
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  console.error(
@@ -182,9 +240,9 @@ var JsonIndexReader = class {
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  if (entry.isSymbolicLink()) continue;
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  const fullPath = join(dir, entry.name);
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  if (entry.isDirectory()) {
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- if (entry.name === "communities.history") continue;
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+ if (entry.name === COMMUNITY_HISTORY_DIR) continue;
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  files.push(...this.collectJsonFiles(fullPath, visited));
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- } else if (entry.name.endsWith(".json") && entry.name !== "co-changes.json" && entry.name !== "communities.json" && entry.name !== "drift-events.json" && entry.name !== "boundary-violations.json") {
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+ } else if (entry.name.endsWith(".json") && !INDEX_ARTIFACT_FILES.includes(entry.name)) {
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  files.push(fullPath);
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  }
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  }
@@ -193,7 +251,14 @@ var JsonIndexReader = class {
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  };
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  export {
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+ SYMBOL_KINDS,
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+ EDGE_KINDS,
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+ SymbolKindSchema,
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+ EdgeKindSchema,
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  DetailLevelSchema,
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+ CoChangeMatrixSchema,
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+ INDEX_ARTIFACT_FILES,
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+ COMMUNITY_HISTORY_DIR,
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  JsonIndexReader
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  };
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- //# sourceMappingURL=chunk-CDGQGCVN.js.map
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+ //# sourceMappingURL=chunk-DT3ZH4AU.js.map
@@ -0,0 +1 @@
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+ {"version":3,"sources":["../src/adapters/storage/json-index-reader.ts","../src/core/types.ts"],"sourcesContent":["import { readFileSync, readdirSync, existsSync, realpathSync } from 'node:fs';\nimport { join, relative } from 'node:path';\nimport {\n FileIndexSchema,\n SymbolNodeSchema,\n GraphEdgeSchema,\n CommitIntentSchema,\n AntiPatternSchema,\n CodeFactSchema,\n type FileIndex,\n} from '../../core/types.js';\nimport { createLogger } from '../../core/logger.js';\n\nconst log = createLogger('ctxo:json-reader');\n\n/** JSON files next to the index entries that are products of Ctxo, not entries: the reader skips them. */\nexport const INDEX_ARTIFACT_FILES: readonly string[] = [\n 'co-changes.json',\n 'communities.json',\n 'drift-events.json',\n 'boundary-violations.json',\n 'contexts-view.json',\n];\n\n/** The folder of archived community snapshots inside the index folder: not entries either. */\nexport const COMMUNITY_HISTORY_DIR = 'communities.history';\n\n/** One index entry and the JSON file on disk it was read from. */\nexport interface IndexEntry {\n readonly path: string;\n readonly index: FileIndex;\n}\n\nexport class JsonIndexReader {\n private readonly indexDir: string;\n\n constructor(ctxoRoot: string) {\n this.indexDir = join(ctxoRoot, 'index');\n }\n\n readAll(): FileIndex[] {\n return this.readEntries().map((entry) => entry.index);\n }\n\n /**\n * Every valid index entry together with the path of the JSON file it came from. A caller that wants to\n * delete an entry must use this path: the `file` field inside the JSON says which source file the entry\n * is for, but a corrupt or crafted file can claim any name, such as an artifact's.\n */\n readEntries(): IndexEntry[] {\n if (!existsSync(this.indexDir)) {\n return [];\n }\n\n const jsonFiles = this.collectJsonFiles(this.indexDir);\n const results: IndexEntry[] = [];\n\n for (const filePath of jsonFiles) {\n const parsed = this.readSingle(filePath);\n if (parsed) {\n results.push({ path: filePath, index: parsed });\n }\n }\n\n return results;\n }\n\n readSingle(absolutePath: string): FileIndex | undefined {\n try {\n const raw = readFileSync(absolutePath, 'utf-8');\n const data: unknown = JSON.parse(raw);\n const result = FileIndexSchema.safeParse(data);\n\n if (result.success) {\n return result.data;\n }\n\n // Strict parse failed — attempt resilient recovery: keep valid items, drop invalid ones.\n const rel = relative(this.indexDir, absolutePath);\n const raw_data = data as Record<string, unknown>;\n\n // Must have at least a valid file name and lastModified to be recoverable.\n if (typeof raw_data['file'] !== 'string' || !raw_data['file'] ||\n typeof raw_data['lastModified'] !== 'number') {\n console.error(\n `[ctxo:json-reader] Invalid schema in ${rel}: ${result.error.message}`,\n );\n return undefined;\n }\n\n const rawSymbols = Array.isArray(raw_data['symbols']) ? raw_data['symbols'] : [];\n const rawEdges = Array.isArray(raw_data['edges']) ? raw_data['edges'] : [];\n const rawIntent = Array.isArray(raw_data['intent']) ? raw_data['intent'] : [];\n const rawAntiPatterns = Array.isArray(raw_data['antiPatterns']) ? raw_data['antiPatterns'] : [];\n\n // A symbol that fails only because of its annotations is kept without them: annotations are\n // optional metadata and must not cost the symbol.\n let droppedAnnotations = 0;\n const validSymbols: unknown[] = [];\n for (const sym of rawSymbols) {\n if (SymbolNodeSchema.safeParse(sym).success) {\n validSymbols.push(sym);\n continue;\n }\n if (sym !== null && typeof sym === 'object' && 'annotations' in sym) {\n const { annotations: _dropped, ...withoutAnnotations } = sym as Record<string, unknown>;\n if (SymbolNodeSchema.safeParse(withoutAnnotations).success) {\n validSymbols.push(withoutAnnotations);\n droppedAnnotations++;\n }\n }\n }\n // A facts value that is present but not an array is treated as absent: facts are optional metadata\n // and must not cost the file. It counts as one dropped fact list in the warning.\n const factsPresent = raw_data['facts'] !== undefined;\n const rawFacts = Array.isArray(raw_data['facts']) ? raw_data['facts'] : undefined;\n const validFacts = rawFacts?.filter((f) => CodeFactSchema.safeParse(f).success);\n const validEdges = rawEdges.filter((e) => GraphEdgeSchema.safeParse(e).success);\n const validIntent = rawIntent.filter((i) => CommitIntentSchema.safeParse(i).success);\n const validAntiPatterns = rawAntiPatterns.filter((a) => AntiPatternSchema.safeParse(a).success);\n\n const droppedSymbols = rawSymbols.length - validSymbols.length;\n const droppedFacts = rawFacts && validFacts\n ? rawFacts.length - validFacts.length\n : factsPresent ? 1 : 0;\n const droppedEdges = rawEdges.length - validEdges.length;\n const droppedIntent = rawIntent.length - validIntent.length;\n const droppedAntiPatterns = rawAntiPatterns.length - validAntiPatterns.length;\n\n if (droppedSymbols > 0 || droppedEdges > 0 || droppedIntent > 0 || droppedAntiPatterns > 0 ||\n droppedAnnotations > 0 || droppedFacts > 0) {\n log.warn(\n `${rel}: dropped ${droppedSymbols} invalid symbol(s), ${droppedEdges} invalid edge(s), ${droppedIntent} invalid intent(s), ${droppedAntiPatterns} invalid antiPattern(s), ${droppedAnnotations} invalid annotation list(s), ${droppedFacts} invalid fact(s); kept ${validSymbols.length} symbol(s), ${validEdges.length} edge(s), ${validIntent.length} intent(s), ${validAntiPatterns.length} antiPattern(s)`,\n );\n }\n\n // Re-parse with the filtered arrays to get a fully-typed FileIndex.\n const recovered = FileIndexSchema.safeParse({\n ...raw_data,\n symbols: validSymbols,\n edges: validEdges,\n intent: validIntent,\n antiPatterns: validAntiPatterns,\n facts: validFacts,\n });\n\n if (!recovered.success) {\n console.error(\n `[ctxo:json-reader] Invalid schema in ${rel}: ${result.error.message}`,\n );\n return undefined;\n }\n\n return recovered.data;\n } catch (err) {\n const rel = relative(this.indexDir, absolutePath);\n console.error(\n `[ctxo:json-reader] Failed to read ${rel}: ${(err as Error).message}`,\n );\n return undefined;\n }\n }\n\n private collectJsonFiles(dir: string, visited: Set<string> = new Set()): string[] {\n const realDir = realpathSync(dir);\n if (visited.has(realDir)) return []; // Guard against symlink loops\n visited.add(realDir);\n\n const files: string[] = [];\n\n for (const entry of readdirSync(dir, { withFileTypes: true })) {\n if (entry.isSymbolicLink()) continue; // Skip symlinks entirely\n\n const fullPath = join(dir, entry.name);\n if (entry.isDirectory()) {\n // Skip non-FileIndex directories under .ctxo/index/\n if (entry.name === COMMUNITY_HISTORY_DIR) continue;\n files.push(...this.collectJsonFiles(fullPath, visited));\n } else if (entry.name.endsWith('.json') && !INDEX_ARTIFACT_FILES.includes(entry.name)) {\n files.push(fullPath);\n }\n }\n\n return files;\n }\n}\n","import { z } from 'zod';\nimport { SYMBOL_KINDS, EDGE_KINDS, FACT_KINDS } from '@ctxo/plugin-api';\n\n// ── Symbol Kinds ────────────────────────────────────────────────\n\nexport { SYMBOL_KINDS };\n\nexport const SymbolKindSchema = z.enum(SYMBOL_KINDS);\nexport type SymbolKind = z.infer<typeof SymbolKindSchema>;\n\n// ── Edge Kinds ──────────────────────────────────────────────────\n\nexport { EDGE_KINDS };\n\nexport const EdgeKindSchema = z.enum(EDGE_KINDS);\nexport type EdgeKind = z.infer<typeof EdgeKindSchema>;\n\n// ── Detail Levels ───────────────────────────────────────────────\n\nexport const DETAIL_LEVELS = [1, 2, 3, 4] as const;\n\nexport const DetailLevelSchema = z.union([\n z.literal(1),\n z.literal(2),\n z.literal(3),\n z.literal(4),\n]);\nexport type DetailLevel = z.infer<typeof DetailLevelSchema>;\n\n// ── Symbol ID ───────────────────────────────────────────────────\n\n/**\n * Format: \"<relativeFile>::<name>::<kind>\"\n * Example: \"src/foo.ts::myFn::function\"\n */\nexport const SymbolIdSchema = z\n .string()\n .min(1)\n .refine(\n (value) => {\n const parts = value.split('::');\n if (parts.length !== 3) return false;\n const [file, name, kind] = parts;\n if (!file || !name || !kind) return false;\n return SymbolKindSchema.safeParse(kind).success;\n },\n { message: 'Symbol ID must match format \"<file>::<name>::<kind>\"' },\n );\nexport type SymbolId = z.infer<typeof SymbolIdSchema>;\n\n// ── Edge Target ─────────────────────────────────────────────────\n\n/**\n * An edge target: either a full 3-part symbol ID (\"<file>::<name>::<kind>\")\n * or a 2-part name-reference (\"<name>::<kind>\") for cross-file / unresolved\n * targets. The graph builder resolves name-references by name at query time.\n */\nexport const EdgeTargetSchema = z.string().refine(\n (s) => {\n const parts = s.split('::');\n if (parts.length !== 3 && parts.length !== 2) return false;\n if (parts.some((p) => p.length === 0)) return false;\n const kind = parts[parts.length - 1];\n return (SYMBOL_KINDS as readonly string[]).includes(kind as string);\n },\n { message: 'edge target must be <file>::<name>::<kind> or <name>::<kind>' },\n);\nexport type EdgeTarget = z.infer<typeof EdgeTargetSchema>;\n\n// ── Symbol Annotation ───────────────────────────────────────────\n\n/** Host-language attribute or decorator on a symbol (protocol v2). Shape only; plugins enforce caps. */\nexport const SymbolAnnotationSchema = z.object({\n name: z.string().min(1),\n args: z.array(z.string()).readonly().optional(),\n named: z.record(z.string(), z.string()).readonly().optional(),\n});\nexport type SymbolAnnotation = z.infer<typeof SymbolAnnotationSchema>;\n\n// ── Symbol Node ─────────────────────────────────────────────────\n\nexport const SymbolNodeSchema = z\n .object({\n symbolId: SymbolIdSchema,\n name: z.string().min(1),\n kind: SymbolKindSchema,\n startLine: z.number().int().nonnegative(),\n endLine: z.number().int().nonnegative(),\n startOffset: z.number().int().nonnegative().optional(),\n endOffset: z.number().int().nonnegative().optional(),\n annotations: z.array(SymbolAnnotationSchema).readonly().optional(),\n })\n .refine((node) => node.endLine >= node.startLine, {\n message: 'endLine must be >= startLine',\n });\nexport type SymbolNode = z.infer<typeof SymbolNodeSchema>;\n\n// ── Graph Edge ──────────────────────────────────────────────────\n\nexport const GraphEdgeSchema = z.object({\n from: SymbolIdSchema, // strict 3-part: from is always a local, resolved symbol\n to: EdgeTargetSchema, // 3-part OR 2-part name-ref for cross-file/unresolved targets\n kind: EdgeKindSchema,\n typeOnly: z.boolean().optional(),\n});\nexport type GraphEdge = z.infer<typeof GraphEdgeSchema>;\n\n// ── Commit Intent ───────────────────────────────────────────────\n\nexport const CommitIntentSchema = z.object({\n hash: z.string().min(1),\n message: z.string(),\n date: z.string().min(1),\n kind: z.literal('commit'),\n});\nexport type CommitIntent = z.infer<typeof CommitIntentSchema>;\n\n// ── Anti-Pattern ────────────────────────────────────────────────\n\nexport const AntiPatternSchema = z.object({\n hash: z.string().min(1),\n message: z.string(),\n date: z.string().min(1),\n});\nexport type AntiPattern = z.infer<typeof AntiPatternSchema>;\n\n// ── Code Fact ───────────────────────────────────────────────────\n\nexport const FactKindSchema = z.enum(FACT_KINDS);\nexport type FactKind = z.infer<typeof FactKindSchema>;\n\n/** A fact extracted from a symbol body (protocol v2). 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