@crewbie/cli 0.1.0-alpha.49

package/dist/setup/instruction-quality.js

@@ -0,0 +1,258 @@
+import { stat } from "node:fs/promises";
+import { posix } from "node:path";
+import YAML from "yaml";
+import { errorCode, optionalText, safePath } from "../core.js";
+import { autoLoadedGuidance, autoLoadedPointer } from "./auto-loaded.js";
+export const INSTRUCTION_STUDY = "https://www.sri.inf.ethz.ch/publications/gloaguen2026agentsmd";
+export function instructionFile(path) {
+    return path === ".crewbie/instructions.md" || /(^|\/)(AGENTS\.md|CLAUDE\.md|GEMINI\.md|copilot-instructions\.md)$|\.instructions\.md$|(^|\/)\.github\/agents\/[^/]+\.agent\.md$|(^|\/)\.claude\/agents\/[^/]+\.md$/.test(path);
+}
+// AI guidance that setup may rewrite; Crewbie-managed agents and all non-AI files are excluded.
+export function editableGuidance(path) {
+    return /^(?:(?:[a-zA-Z0-9._-]+\/)*(?:AGENTS|CLAUDE|GEMINI)\.md|\.github\/copilot-instructions\.md|\.github\/instructions\/[a-z0-9._/-]+\.instructions\.md|\.github\/agents\/(?!crewbie-)[a-z0-9._-]+\.agent\.md|\.claude\/agents\/[a-z0-9._-]+\.md)$/.test(path);
+}
+export function validateInstructionScope(path, content) {
+    if (!path.startsWith(".github/instructions/") || !path.endsWith(".instructions.md"))
+        return;
+    const header = /^---\r?\n([\s\S]*?)\r?\n---(?:\r?\n|$)/.exec(content);
+    if (!header)
+        throw new Error(`${path} needs YAML frontmatter with an explicit applyTo scope.`);
+    const data = YAML.parse(header[1]);
+    if (typeof data !== "object" || data === null || !("applyTo" in data) || typeof data.applyTo !== "string"
+        || !data.applyTo.trim() || data.applyTo.split(",").some((glob) => !glob.trim() || /(?:^|\/)\.\.(?:\/|$)|\\|^[\/~]|:/.test(glob.trim()))) {
+        throw new Error(`${path} needs repository-relative applyTo globs.`);
+    }
+}
+const normalize = (text) => text.replace(/[`*_]/g, "").replace(/\s+/g, " ").trim().toLowerCase();
+const generic = /^(?:you are (?:a )?(?:(?:senior|experienced) )?(?:software )?(?:engineer|developer)|write (?:clean(?:,? readable)?(?: and maintainable)?|(?:high[- ]quality|good)) code(?: and tests)?|follow (?:coding )?best practices|be (?:thorough|helpful|concise)|ensure (?:high )?code quality|run (?:the )?tests|write (?:high[- ]quality|good |unit )?tests)[.!]?$/i;
+function scopeDirectory(path) {
+    const marker = path.indexOf(".github/");
+    return marker >= 0 ? path.slice(0, marker) : (posix.dirname(path) === "." ? "" : `${posix.dirname(path)}/`);
+}
+export async function assessInstructions(root, paths) {
+    const result = {
+        basis: INSTRUCTION_STUDY,
+        interpretation: "Advisory static heuristics, not a quality score or a causal prediction. The study does not establish a harmful word-count threshold or prove these individual patterns cause failures. Preserve justified policy; compare task outcomes before and after approved changes.",
+        inspected: [], omitted: [], signals: [], signalsOmitted: 0,
+    };
+    const signalCounts = new Map();
+    const add = (signal) => {
+        const count = signalCounts.get(signal.path) ?? 0;
+        signalCounts.set(signal.path, count + 1);
+        if (count < 12)
+            result.signals.push(signal);
+        else
+            result.signalsOmitted++;
+    };
+    const visible = new Set(paths);
+    const priority = (path) => ["AGENTS.md", "CLAUDE.md", ".github/copilot-instructions.md", ".crewbie/instructions.md"].includes(path) ? 0 : path.endsWith(".agent.md") ? 2 : 1;
+    const instructions = paths.filter(instructionFile).sort((a, b) => priority(a) - priority(b) || a.localeCompare(b));
+    const allDocs = paths.filter((path) => /(^|\/)(README|CONTRIBUTING)\.md$/i.test(path));
+    const docs = allDocs.slice(0, 12);
+    const manifests = paths.filter((path) => /(^|\/)package\.json$/.test(path));
+    const content = new Map();
+    let remaining = 512_000;
+    const read = async (path) => {
+        if (content.has(path))
+            return content.get(path);
+        const absolute = await safePath(root, path);
+        let size;
+        try {
+            size = (await stat(absolute)).size;
+        }
+        catch (error) {
+            if (!errorCode(error, "ENOENT"))
+                throw error;
+            result.omitted.push({ path, reason: "File disappeared during assessment." });
+            return null;
+        }
+        if (size > 64_000 || size > remaining) {
+            result.omitted.push({ path, reason: "Not inspected because of the assessment's byte budget; size alone is not a quality finding." });
+            return null;
+        }
+        remaining -= size;
+        const text = await optionalText(absolute);
+        if (text === null || text.includes("\0")) {
+            result.omitted.push({ path, reason: "Not readable as ordinary text." });
+            return null;
+        }
+        content.set(path, text);
+        return text;
+    };
+    for (const path of instructions.slice(0, 32)) {
+        if (await read(path) !== null)
+            result.inspected.push(path);
+    }
+    for (const path of instructions.slice(32))
+        result.omitted.push({ path, reason: "Instruction-file count exceeds the bounded assessment window." });
+    for (const path of docs)
+        await read(path);
+    for (const path of allDocs.slice(12))
+        result.omitted.push({ path, reason: "Documentation count exceeds the overlap-check window." });
+    const scripts = new Map();
+    for (const path of manifests.slice(0, 20)) {
+        const text = await read(path);
+        if (text === null)
+            continue;
+        let data;
+        try {
+            data = JSON.parse(text);
+        }
+        catch (error) {
+            if (!(error instanceof SyntaxError))
+                throw error;
+            result.omitted.push({ path, reason: "Invalid package JSON; script references were not verified against it." });
+            continue;
+        }
+        if (typeof data !== "object" || data === null || Array.isArray(data)) {
+            result.omitted.push({ path, reason: "Package manifest is not an object; script references remain unverified." });
+            continue;
+        }
+        const declared = "scripts" in data ? data.scripts : undefined;
+        if (declared !== undefined && (typeof declared !== "object" || declared === null || Array.isArray(declared))) {
+            result.omitted.push({ path, reason: "Invalid scripts declaration; script references remain unverified." });
+            continue;
+        }
+        scripts.set(path, new Set(Object.keys(declared ?? {})));
+    }
+    for (const path of manifests.slice(20))
+        result.omitted.push({ path, reason: "Manifest count exceeds the script-check window." });
+    for (const path of result.inspected) {
+        const text = content.get(path);
+        const lines = text.split(/\r?\n/);
+        if (path.startsWith(".github/instructions/") && path.endsWith(".instructions.md")) {
+            try {
+                validateInstructionScope(path, text);
+            }
+            catch (error) {
+                add({ code: "missing-path-scope", level: "warning", path, line: 1,
+                    detail: error instanceof Error ? error.message : "Invalid path-scoped instruction header.",
+                    recommendation: "Specify valid applyTo globs for the intended domain before moving repository-wide rules here." });
+            }
+        }
+        if (["AGENTS.md", ".github/copilot-instructions.md"].includes(path) && text.trim().split(/\s+/).length > 600) {
+            add({ code: "broad-root-guidance", level: "advisory", path, line: 1,
+                detail: "Always-loaded guidance exceeds Crewbie's 600-word review threshold, not a paper-established harmful limit.",
+                recommendation: "Review relevance and domain scope. Keep necessary shared policy; move justified domain rules behind scoped instructions or nested AGENTS.md, with source reductions and destination edits reviewed together." });
+        }
+        const frontmatter = /^---\r?\n[\s\S]*?\r?\n---(?:\r?\n|$)/.exec(text)?.[0];
+        const frontmatterEndLine = frontmatter === undefined ? 0 : lines.findIndex((line, index) => index > 0 && line.trim() === "---") + 1;
+        const semantic = lines.map((line, index) => ({ text: line.replace(/^\s*[-*]\s*/, "").trim(), line: index + 1 }))
+            .filter((line) => line.line > frontmatterEndLine)
+            .filter((line) => line.text && !line.text.startsWith("#") && !line.text.startsWith("<!--"));
+        if (semantic.length && semantic.every((line) => generic.test(line.text))) {
+            add({ code: "generic-only", level: "advisory", path, line: semantic[0].line,
+                detail: "The file contains only generic advice, without a concrete command, local constraint or context pointer.",
+                recommendation: "Check whether it adds useful context. Prefer a non-obvious repository convention or a scoped pointer; do not pad it to meet a length target." });
+        }
+        let lineNumber = 1;
+        let sharedProfileReported = false;
+        for (const paragraph of text.split(/(\r?\n\s*\r?\n)/)) {
+            const normalized = normalize(paragraph);
+            if (normalized.split(" ").length >= 12 && normalized.length >= 80 && !/^\s*#/.test(paragraph)) {
+                const duplicate = docs.find((doc) => doc !== path && content.has(doc) && normalize(content.get(doc)).includes(normalized));
+                if (duplicate)
+                    add({
+                        code: "duplicated-documentation", level: "advisory", path, line: lineNumber, related: duplicate,
+                        detail: "A substantial passage repeats existing repository documentation. This is an exact normalized overlap, not a claim that repetition caused a failure.",
+                        recommendation: "Consider a short pointer explaining when to read the existing document. Retain necessary standalone constraints where the contexts differ.",
+                    });
+                if (path.endsWith(".agent.md") && !sharedProfileReported) {
+                    const other = result.inspected.find((candidate) => candidate !== path && candidate.endsWith(".agent.md")
+                        && posix.dirname(candidate) === posix.dirname(path) && normalize(content.get(candidate)).includes(normalized));
+                    if (other) {
+                        sharedProfileReported = true;
+                        add({ code: "shared-profile-boilerplate", level: "advisory", path, line: lineNumber, related: other,
+                            detail: "A substantial instruction block is repeated across specialist profiles. This indicates shared maintenance, not proven runtime harm.",
+                            recommendation: "Consider one explicit shared-policy pointer, keeping domain-specific checks and non-negotiables in each charter. Preserve access for agents that run independently." });
+                    }
+                }
+            }
+            lineNumber += (paragraph.match(/\n/g) ?? []).length;
+        }
+        // Files Copilot reads; other hosts (Claude, Gemini) do not attach .github guidance, so their pointers are needed.
+        const copilotHost = /^\.github\/(?:copilot-instructions\.md|instructions\/.+\.instructions\.md|agents\/(?!crewbie-)[^/]+\.agent\.md)$|(^|\/)AGENTS\.md$/.test(path);
+        const directory = scopeDirectory(path);
+        const scopedManifests = manifests.filter((manifest) => manifest.startsWith(directory));
+        let fenced = false;
+        for (let index = 0; index < lines.length; index++) {
+            const line = lines[index];
+            if (/^\s*(```|~~~)/.test(line)) {
+                fenced = !fenced;
+                continue;
+            }
+            const pointer = !fenced && copilotHost ? autoLoadedPointer(line) : null;
+            const targets = pointer?.references.map((reference) => reference.replace(/^\.\//, "").replace(/^copilot-instructions\.md$/, ".github/copilot-instructions.md")
+                .replace(/^([\w.-]+\.instructions\.md)$/, ".github/instructions/$1")).filter((target) => target !== path) ?? [];
+            if (pointer && targets.length) {
+                const missing = targets.filter((target) => autoLoadedGuidance(target) && !visible.has(target));
+                add({ code: "auto-loaded-reference", level: "warning", path, line: index + 1, related: targets[0],
+                    detail: `Tells the agent to read ${targets.join(", ")}, which Copilot already attaches: repository-wide instructions and AGENTS.md always, path-specific instructions when the working files match applyTo.${missing.length ? ` ${missing.join(", ")} does not exist.` : ""}`,
+                    recommendation: pointer.pointerOnly
+                        ? "Remove the line. Adopted agents are cleaned on install; the archive keeps the original."
+                        : "Remove only the pointer and keep the rest of the line. If the agent needs rules that no automatically loaded file contains, put them in a path-scoped .github/instructions/<domain>.instructions.md." });
+            }
+            if (!fenced && path.startsWith(".github/agents/") && copilotHost && /\b(?:read|consult|follow|review|see)\b/i.test(line)) {
+                for (const match of line.matchAll(/`([\w./-]+\.md)`|\]\(([\w./-]+\.md)\)/g)) {
+                    const target = posix.normalize(match[1] ?? match[2]).replace(/^\.\//, "");
+                    if (autoLoadedGuidance(target) || target.startsWith(".crewbie/") || target.startsWith(".github/agents/") || !visible.has(target))
+                        continue;
+                    add({ code: "agent-only-context", level: "advisory", path, line: index + 1, related: target,
+                        detail: "Only this agent is told to read this document; other agents and Copilot chat working on the same files do not get it.",
+                        recommendation: "If it holds rules for specific paths, consider a path-scoped .github/instructions/<domain>.instructions.md with applyTo globs so Copilot loads them automatically, then drop the pointer." });
+                }
+            }
+            if (!fenced)
+                for (const match of line.matchAll(/\[[^\]]+\]\(([^)\s]+)(?:\s+"[^"]*")?\)/g)) {
+                    const raw = match[1];
+                    if (/^(?:[a-z][a-z0-9+.-]*:|#|\/|~)/i.test(raw) || /[<>{}$*]/.test(raw))
+                        continue;
+                    let target;
+                    try {
+                        target = decodeURIComponent(raw.split(/[?#]/)[0]);
+                    }
+                    catch (error) {
+                        if (error instanceof URIError)
+                            continue;
+                        throw error;
+                    }
+                    if (!target)
+                        continue;
+                    const resolved = posix.normalize(posix.join(posix.dirname(path), target)).replace(/\/+$/, "") || ".";
+                    if (resolved === "." || resolved.startsWith("../") || visible.has(resolved) || paths.some((candidate) => candidate.startsWith(`${resolved}/`)))
+                        continue;
+                    add({ code: "unverified-reference", level: "warning", path, line: index + 1,
+                        detail: "A literal relative Markdown link has no target in the visible, non-ignored repository file index.",
+                        recommendation: "Verify the link relative to this instruction file. Correct stale paths, or state when an ignored/generated target becomes available." });
+                }
+            if (!/\b(?:don't|do not|avoid|never)\b/i.test(line)) {
+                if (/\b(?:always|every change)\b/i.test(line) && /\b(?:full|entire|all)\b.*\btests?\b/i.test(line) && !/\b(?:merge|release|compliance|security|CI)\b/i.test(line)) {
+                    add({ code: "unconditional-full-suite", level: "advisory", path, line: index + 1,
+                        detail: "The text appears to require full-suite work unconditionally; faithful compliance may increase cost.",
+                        recommendation: "Confirm the intent. Scope routine checks to changed behavior where appropriate, while preserving explicit merge, release and compliance gates." });
+                }
+                if (!line.includes("--if-present")) {
+                    const npmScripts = [...line.matchAll(/\bnpm\s+run\s+([a-zA-Z0-9:_-]+)/g)];
+                    if (npmScripts.length) {
+                        if (!scopedManifests.length) {
+                            add({ code: "missing-package-manifest", level: "warning", path, line: index + 1,
+                                detail: "A literal npm run command has no package.json in this instruction scope to establish its working directory or script.",
+                                recommendation: "Verify the command's working directory. Add the relevant package manifest to the repository or make the guidance name the intended package location." });
+                        }
+                        else if (scopedManifests.every((manifest) => scripts.has(manifest))) {
+                            for (const match of npmScripts) {
+                                if (scopedManifests.some((manifest) => scripts.get(manifest).has(match[1])))
+                                    continue;
+                                add({ code: "missing-npm-script", level: "warning", path, line: index + 1,
+                                    detail: "A literal npm run command names no script in any inspected package manifest within this instruction scope.",
+                                    recommendation: "Verify the command and working directory against the current manifest. Correct stale guidance instead of creating a script solely to satisfy it." });
+                            }
+                        }
+                    }
+                }
+            }
+        }
+    }
+    return result;
+}
+//# sourceMappingURL=instruction-quality.js.map

package/dist/setup/instruction-quality.js.map

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package/dist/setup/inventory.d.ts

@@ -0,0 +1,26 @@
+export interface Inventory {
+    mode: "brownfield" | "greenfield";
+    files: {
+        path: string;
+        kind: "instructions" | "agents" | "archive" | "constitution";
+        content: string;
+        beforeHash: string;
+        redacted: boolean;
+    }[];
+    mcp: {
+        path: string;
+        servers: {
+            name: string;
+            transport: string;
+            executable: string | null;
+            credentials: string[];
+        }[];
+    }[];
+    omitted: {
+        path: string;
+        reason: string;
+    }[];
+    scope: string;
+}
+export declare function redact(text: string): string;
+export declare function inventory(root: string, paths: string[]): Promise<Inventory>;

package/dist/setup/inventory.js

@@ -0,0 +1,78 @@
+import { stat } from "node:fs/promises";
+import { basename } from "node:path";
+import { parse } from "jsonc-parser";
+import { errorCode, hash, optionalText, record, safePath } from "../core.js";
+import { instructionFile } from "./instruction-quality.js";
+export function redact(text) {
+    return text.replace(/-----BEGIN [^-]*PRIVATE KEY-----[\s\S]*?-----END [^-]*PRIVATE KEY-----/g, "<REDACTED>")
+        .replace(/\b(?:gh[pousr]_[A-Za-z0-9]{20,}|github_pat_[A-Za-z0-9_]{20,}|sk-[A-Za-z0-9_-]{20,})\b/g, "<REDACTED>")
+        .replace(/((?:token|password|secret|api[_-]?key)\s*["']?\s*[:=]\s*)["']?[^\s"',;}]+/gi, "$1<REDACTED>")
+        .replace(/(https?:\/\/)[^\s/@]+:[^\s/@]+@/g, "$1<REDACTED>@");
+}
+export async function inventory(root, paths) {
+    const implementation = paths.filter((path) => !/(^|\/)(?:\.git|\.github|\.crewbie|\.claude|\.copilot|node_modules|vendor|dist|build|coverage|test|tests|docs)\//.test(path)
+        && /\.(?:[cm]?[jt]sx?|py|go|rs|java|cs|rb|php|swift|kt|tf|bicep|vue|svelte)$/.test(path));
+    const result = {
+        mode: implementation.length ? "brownfield" : "greenfield", files: [], mcp: [], omitted: [],
+        scope: "AI guidance only: agent instructions, custom agents, constitution and MCP metadata, bounded to 256 KB of text. Application code, READMEs, manifests and other project files are not read; only their names are mapped (directories and workspaces) to check cited paths. Ignored files and personal/global MCP settings are not read. MCP configurations are inspected, never launched; arguments, URLs, headers and credential values are withheld. Builds and server availability are unverified.",
+    };
+    const mcpPaths = paths.filter((path) => /(^|\/)(?:mcp\.json|mcp-config\.json|\.mcp\.json)$/.test(path) || path === ".vscode/settings.json");
+    const guidance = paths.filter((path) => instructionFile(path) || /^\.crewbie\/agent-archive\/(?:github|claude)\/agents\/.*\.md$/.test(path) || /(^|\/)constitution\.md$/i.test(path));
+    const candidates = [...new Set([...guidance, ...mcpPaths])];
+    let remaining = 256_000;
+    for (const path of candidates) {
+        const absolute = await safePath(root, path);
+        let size;
+        try {
+            size = (await stat(absolute)).size;
+        }
+        catch (error) {
+            if (!errorCode(error, "ENOENT"))
+                throw error;
+            result.omitted.push({ path, reason: "File disappeared during assessment." });
+            continue;
+        }
+        if (size > 64_000 || size > remaining) {
+            result.omitted.push({ path, reason: "File exceeds the text assessment budget or is not ordinary text." });
+            continue;
+        }
+        const content = await optionalText(absolute);
+        if (content === null || content.includes("\0")) {
+            result.omitted.push({ path, reason: "File disappeared or is not ordinary text." });
+            continue;
+        }
+        remaining -= size;
+        if (mcpPaths.includes(path)) {
+            try {
+                const errors = [];
+                const parsed = parse(content, errors, { allowTrailingComma: true });
+                if (errors.length)
+                    throw new SyntaxError("Invalid MCP JSON.");
+                const config = record(parsed, "MCP configuration");
+                const nested = config.mcp === undefined ? config : record(config.mcp, "MCP settings");
+                const servers = record(nested.mcpServers ?? nested.servers ?? {}, "MCP servers");
+                result.mcp.push({ path, servers: Object.entries(servers).map(([name, raw]) => {
+                        const server = record(raw, "MCP server");
+                        return {
+                            name: redact(name), transport: typeof server.type === "string" ? redact(server.type) : server.command ? "stdio" : "remote",
+                            executable: typeof server.command === "string" ? redact(basename(server.command.replaceAll("\\", "/"))) : null,
+                            credentials: Object.keys(record(server.env ?? {}, "MCP environment")).map(redact),
+                        };
+                    }) });
+            }
+            catch (error) {
+                if (!(error instanceof SyntaxError) && !(error instanceof Error && /must be an object/.test(error.message)))
+                    throw error;
+                result.omitted.push({ path, reason: "MCP configuration is not valid JSON/JSONC; inspect manually. Raw configuration was not shared." });
+            }
+            continue;
+        }
+        const safe = redact(content);
+        result.files.push({
+            path, kind: /(^|\/)constitution\.md$/i.test(path) ? "constitution" : path.startsWith(".crewbie/agent-archive/") ? "archive" : /(^|\/)(?:\.github|\.claude)\/agents\//.test(path) ? "agents" : "instructions",
+            content: safe, beforeHash: hash(content), redacted: safe !== content,
+        });
+    }
+    return result;
+}
+//# sourceMappingURL=inventory.js.map

package/dist/setup/inventory.js.map

@@ -0,0 +1 @@
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package/dist/setup/onboarding.d.ts

@@ -0,0 +1,40 @@
+import type { Assessment } from "./assessment.js";
+import { type Analyze, type ModelChoice } from "./copilot.js";
+export { analyzeWithCopilot, explicitModel, type Analyze } from "./copilot.js";
+export interface SetupReview {
+    summary: string;
+    findings: {
+        area: string;
+        path: string | null;
+        assessment: string;
+        recommendation: string;
+        action: string;
+        editPaths?: string[];
+        deferReason?: string;
+    }[];
+    agentDecisions?: {
+        path: string;
+        action: "adopt" | "retain";
+        reason: string;
+    }[];
+    /** Deterministic checks of the proposal against the working tree; advisory, never applied. */
+    warnings?: string[];
+}
+export interface SetupProposal extends Assessment {
+    status: "ready" | "clarification";
+    description: string;
+    review: SetupReview;
+    analysisModel: string;
+    agentAdoptions: Record<string, string>;
+}
+export declare function setupPrompt(assessment: Assessment, description: string, models?: ModelChoice[]): string;
+export declare function parseSetupReview(output: string, assessment: Assessment, description: string, model: string, models?: ModelChoice[], specialistModel?: string): SetupProposal;
+export declare function proposeSetup(assessment: Assessment, description: string, model: string, io: {
+    analyze?: Analyze;
+    ask?: (question: string) => Promise<string>;
+    report: (text: string) => void;
+    models?: ModelChoice[];
+    specialistModel?: string;
+}): Promise<SetupProposal>;
+export declare function renderSetupReview(proposal: SetupProposal): string;
+export declare function selectGuidance<T extends Assessment>(proposal: T, apply: boolean): T;