@crafter/cli-tree 0.1.3 → 0.2.0

package/dist/cli.js

@@ -5,9 +5,13 @@ import {
   treeToString
 } from "./chunk-v5w3w6bd.js";
 import {
+  crossCliToFlowWorkflow,
+  formatTimeRange,
   mineCli,
-  minedToFlowWorkflow
-} from "./chunk-dnq2rnr7.js";
+  mineCrossCli,
+  minedToFlowWorkflow,
+  sparkline
+} from "./chunk-9pnqbn7b.js";
 import {
   NullDelegate,
   runArchaeology
@@ -28,7 +32,7 @@ import"./chunk-q4se2rwe.js";
 // src/cli.ts
 var args = process.argv.slice(2);
 var subcommand = args[0];
-var HELP_SUBCOMMANDS = new Set(["flow", "mine", "archaeology", "safe-help"]);
+var HELP_SUBCOMMANDS = new Set(["flow", "mine", "archaeology", "safe-help", "cross"]);
 var isHelpFlag = args.includes("--help") || args.includes("-h");
 if (!subcommand || isHelpFlag && !HELP_SUBCOMMANDS.has(subcommand ?? "")) {
   printMainHelp();
@@ -43,6 +47,8 @@ if (isHelpFlag) {
     printArchaeologyHelp();
   else if (subcommand === "safe-help")
     printSafeHelpHelp();
+  else if (subcommand === "cross")
+    printCrossHelp();
   else
     printMainHelp();
   process.exit(0);
@@ -55,6 +61,8 @@ if (subcommand === "flow") {
   await runArchaeologyCmd(args.slice(1));
 } else if (subcommand === "safe-help") {
   await runSafeHelp(args.slice(1));
+} else if (subcommand === "cross") {
+  await runCross(args.slice(1));
 } else {
   await runTree(args);
 }
@@ -66,25 +74,64 @@ function printMainHelp() {
     clitree <binary> [options]              Render command tree from --help
     clitree flow <file> [options]           Render a workflow YAML as a DAG
     clitree mine <binary> [options]         Mine shell history for workflows
+    clitree cross [options]                 Detect cross-CLI workflows (git + gh, docker + kubectl)
     clitree archaeology <binary> [options]  Full analysis: tree + mining + (LLM)
     clitree safe-help <binary> [sub...]     Fetch clean help for any CLI (no pager, no overstriking)
 
   Examples:
     clitree docker                          # basic tree
     clitree mine git                        # "what workflows do I repeat with git?"
+    clitree cross                           # cross-CLI flows across your history
     clitree archaeology bun                 # tree + mining + LLM archaeology
     clitree safe-help git commit            # avoid the git man-page pager trap
 
   Subcommands:
     tree          Parse --help output (default; passing a binary name invokes this)
     flow          Render a workflow YAML file as an ASCII DAG
-    mine          Discover workflows from your shell history
+    mine          Discover workflows from your shell history (single CLI)
+    cross         Discover workflows that span multiple CLIs (e.g. git → gh)
     archaeology   Run full analysis (tree + mine + LLM proposals when available)
     safe-help     Return inline help for any CLI, handling pager/overstrike edge cases
 
   Help for a subcommand: clitree <subcommand> --help
 `);
 }
+function printCrossHelp() {
+  console.log(`
+  clitree cross — Mine cross-CLI workflows from your shell history
+
+  Usage:
+    clitree cross [options]
+
+  This is mineCli's bigger sibling. Instead of filtering history to a single
+  binary, it looks at every command in a session and finds sequences that weave
+  between tools — e.g.:
+
+    git push → gh pr create
+    docker build → docker push → kubectl apply
+    bun test → git commit → git push
+
+  These patterns are invisible to 'clitree mine <cli>' because they cross boundaries.
+
+  Examples:
+    clitree cross                           # top 10 cross-CLI workflows
+    clitree cross --top-k 5                 # just the top 5
+    clitree cross --only git,gh,docker      # restrict to a set of CLIs
+    clitree cross --format json             # raw data
+
+  Options:
+    --top-k <n>             Max workflows to return (default: 10)
+    --min-support <n>       Minimum occurrences (default: 3)
+    --min-path-length <n>   Minimum chain length (default: 2)
+    --max-path-length <n>   Maximum chain length (default: 5)
+    --min-distinct-clis <n> Require at least this many distinct CLIs (default: 2)
+    --only <csv>            Whitelist: only include these CLIs (comma-separated)
+    --format <fmt>          ansi (default) or json
+    --no-color              Disable ANSI colors
+    --no-flow               Skip DAG rendering of the top workflow
+    -h, --help              Show this help
+`);
+}
 function printSafeHelpHelp() {
   console.log(`
   clitree safe-help — Fetch clean help output for any CLI
@@ -128,22 +175,26 @@ function printMineHelp() {
 
   Examples:
     clitree mine git
+    clitree mine git --top-k 3                    # render top 3 workflows as DAGs
     clitree mine docker --min-support 5 --with-flow
     clitree mine bun --format json > bun-flows.json
     clitree mine git --no-color | tee report.txt
+    clitree mine git --no-activity                # skip temporal sparklines
 
   Options:
     --min-support <n>    Minimum occurrences to count as a workflow (default: 3)
     --history-path <p>   Custom shell history path (default: ~/.zsh_history)
     --format <fmt>       Output format: ansi (default), json
-    --max-paths <n>      Max workflows to show (default: 10)
-    --with-flow          Always render the top workflow as an ASCII DAG
-    --no-flow            Never render the DAG (overrides auto-detect)
+    --max-paths <n>      Max workflows to show in text list (default: 10)
+    --top-k <n>          Render top N workflows as DAGs (default: 1)
+    --with-flow          Include 2-step workflows in DAG rendering
+    --no-flow            Skip DAG rendering entirely
+    --no-activity        Skip hour/day/30-day activity sparklines
     --no-color           Disable ANSI colors (also auto-disabled when stdout is not a TTY)
     -h, --help           Show this help
 
-  By default, the top workflow is rendered as a DAG only when it has 3+ steps.
-  Use --with-flow to force it on even for 2-step chains, or --no-flow to skip.
+  By default, the top 3+ step workflow is rendered as a DAG.
+  --top-k bumps that to N distinct workflows stacked on top of each other.
 `);
 }
 function printArchaeologyHelp() {
@@ -457,6 +508,8 @@ async function runMine(args2) {
   let format = "ansi";
   let maxPaths = 10;
   let withFlow = "auto";
+  let topK = 1;
+  let showActivity = true;
   for (let i = 0;i < args2.length; i++) {
     const arg = args2[i];
     if (arg === "--min-support" && args2[i + 1]) {
@@ -467,10 +520,16 @@ async function runMine(args2) {
       format = args2[++i];
     } else if (arg === "--max-paths" && args2[i + 1]) {
       maxPaths = Number.parseInt(args2[++i], 10);
+    } else if (arg === "--top-k" && args2[i + 1]) {
+      topK = Number.parseInt(args2[++i], 10);
+      if (withFlow === "auto")
+        withFlow = "on";
     } else if (arg === "--with-flow" || arg === "--flow") {
       withFlow = "on";
     } else if (arg === "--no-flow") {
       withFlow = "off";
+    } else if (arg === "--no-activity") {
+      showActivity = false;
     } else if (arg !== "--no-color" && !arg.startsWith("-")) {
       binary = arg;
     }
@@ -504,6 +563,9 @@ ${C.bold}${C.magenta}${binary}${C.reset} ${C.gray}— shell history analysis${C.
       }
       console.log();
     }
+    if (showActivity && result.activity.total > 0) {
+      renderActivitySection(result.activity, C);
+    }
     if (result.workflows.length > 0) {
       console.log(`${C.bold}Discovered workflows:${C.reset}`);
       for (const wf of result.workflows.slice(0, maxPaths)) {
@@ -525,12 +587,18 @@ ${C.bold}${C.magenta}${binary}${C.reset} ${C.gray}— shell history analysis${C.
     }
     if (withFlow !== "off") {
       const minSteps = withFlow === "on" ? 2 : 3;
-      const topForFlow = pickWorkflowForFlow(result.workflows, minSteps);
-      if (topForFlow) {
-        const flowWorkflow = minedToFlowWorkflow(topForFlow);
-        const rendered = shouldUseColor(args2) ? flowToAnsi(flowWorkflow) : flowToString(flowWorkflow);
-        console.log(`${C.bold}Top workflow (visualized):${C.reset}`);
-        console.log(rendered);
+      const topK_effective = Math.max(1, topK);
+      const candidates = pickWorkflowsForFlow(result.workflows, minSteps, topK_effective);
+      if (candidates.length > 0) {
+        const header = candidates.length === 1 ? "Top workflow (visualized):" : `Top ${candidates.length} workflows (visualized):`;
+        console.log(`${C.bold}${header}${C.reset}`);
+        for (let i = 0;i < candidates.length; i++) {
+          if (i > 0)
+            console.log(`${C.gray}${"─".repeat(60)}${C.reset}`);
+          const flowWorkflow = minedToFlowWorkflow(candidates[i]);
+          const rendered = shouldUseColor(args2) ? flowToAnsi(flowWorkflow) : flowToString(flowWorkflow);
+          console.log(rendered);
+        }
         console.log();
       }
     }
@@ -539,13 +607,124 @@ ${C.bold}${C.magenta}${binary}${C.reset} ${C.gray}— shell history analysis${C.
     process.exit(1);
   }
 }
-function pickWorkflowForFlow(workflows, minSteps = 3) {
+function renderActivitySection(activity, C) {
+  if (activity.firstSeen === 0)
+    return;
+  const dayNames = ["Sun", "Mon", "Tue", "Wed", "Thu", "Fri", "Sat"];
+  console.log(`${C.bold}Activity:${C.reset}`);
+  const range = formatTimeRange(activity.firstSeen, activity.lastSeen);
+  console.log(`  ${C.dim}Tracked over:${C.reset} ${C.cyan}${range}${C.reset}`);
+  const hourSpark = sparkline(activity.hourOfDay);
+  console.log(`  ${C.dim}Hour of day: ${C.reset}${C.cyan}${hourSpark}${C.reset} ${C.dim}(0h → 23h)${C.reset}`);
+  const dowMax = Math.max(...activity.dayOfWeek);
+  if (dowMax > 0) {
+    console.log(`  ${C.dim}Day of week:${C.reset}`);
+    for (let i = 0;i < 7; i++) {
+      const count = activity.dayOfWeek[i];
+      const barLen = dowMax > 0 ? Math.round(count / dowMax * 20) : 0;
+      const bar = "█".repeat(Math.max(count > 0 ? 1 : 0, barLen));
+      console.log(`    ${C.gray}${dayNames[i]}${C.reset} ${C.cyan}${bar}${C.reset} ${C.dim}${count}${C.reset}`);
+    }
+  }
+  if (activity.last30Days.some((v) => v > 0)) {
+    const monthSpark = sparkline(activity.last30Days);
+    console.log(`  ${C.dim}Last 30 days:${C.reset} ${C.cyan}${monthSpark}${C.reset} ${C.dim}(30d ago → today)${C.reset}`);
+  }
+  console.log();
+}
+function pickWorkflowsForFlow(workflows, minSteps, topK) {
+  const result = [];
+  const signatures = new Set;
   for (const wf of workflows) {
     const len = wf.path[0]?.length ?? 0;
-    if (len >= minSteps)
-      return wf;
+    if (len < minSteps)
+      continue;
+    const sig = wf.path[0].join(" → ");
+    if (signatures.has(sig))
+      continue;
+    signatures.add(sig);
+    result.push(wf);
+    if (result.length >= topK)
+      break;
+  }
+  return result;
+}
+async function runCross(args2) {
+  let format = "ansi";
+  let topK = 10;
+  let minSupport = 3;
+  let minPathLength = 2;
+  let maxPathLength = 5;
+  let minDistinctCLIs = 2;
+  let onlyList = [];
+  let withFlow = true;
+  for (let i = 0;i < args2.length; i++) {
+    const arg = args2[i];
+    if (arg === "--top-k" && args2[i + 1]) {
+      topK = Number.parseInt(args2[++i], 10);
+    } else if (arg === "--min-support" && args2[i + 1]) {
+      minSupport = Number.parseInt(args2[++i], 10);
+    } else if (arg === "--min-path-length" && args2[i + 1]) {
+      minPathLength = Number.parseInt(args2[++i], 10);
+    } else if (arg === "--max-path-length" && args2[i + 1]) {
+      maxPathLength = Number.parseInt(args2[++i], 10);
+    } else if (arg === "--min-distinct-clis" && args2[i + 1]) {
+      minDistinctCLIs = Number.parseInt(args2[++i], 10);
+    } else if (arg === "--only" && args2[i + 1]) {
+      onlyList = args2[++i].split(",").map((s) => s.trim()).filter(Boolean);
+    } else if (arg === "--format" && args2[i + 1]) {
+      format = args2[++i];
+    } else if (arg === "--no-flow") {
+      withFlow = false;
+    }
+  }
+  try {
+    const result = await mineCrossCli({
+      topK,
+      minSupport,
+      minPathLength,
+      maxPathLength,
+      minDistinctCLIs,
+      allowedCLIs: onlyList.length > 0 ? onlyList : undefined
+    });
+    if (format === "json") {
+      console.log(JSON.stringify(result, null, 2));
+      return;
+    }
+    const C = makeColors(shouldUseColor(args2));
+    console.log(`
+${C.bold}${C.magenta}cross-CLI workflow analysis${C.reset}
+`);
+    console.log(`${C.bold}Scope:${C.reset}`);
+    console.log(`  ${C.dim}Sessions analyzed:${C.reset}  ${C.cyan}${result.sessionsAnalyzed}${C.reset}`);
+    console.log(`  ${C.dim}Distinct CLIs:${C.reset}      ${C.cyan}${result.distinctCLIs.length}${C.reset}`);
+    console.log(`  ${C.dim}Transitions:${C.reset}        ${C.cyan}${result.totalTransitions}${C.reset}
+`);
+    if (result.workflows.length === 0) {
+      console.log(`${C.dim}No cross-CLI workflows found. Try lowering --min-support or --min-distinct-clis.${C.reset}
+`);
+      return;
+    }
+    console.log(`${C.bold}Cross-CLI workflows (top ${result.workflows.length}):${C.reset}`);
+    for (let i = 0;i < result.workflows.length; i++) {
+      const wf = result.workflows[i];
+      const chain = wf.path.map((s) => `${C.green}${s.cli}${C.reset} ${C.cyan}${s.subcommand}${C.reset}`).join(` ${C.gray}→${C.reset} `);
+      console.log(`  ${C.dim}${(i + 1).toString().padStart(2)}.${C.reset} ${chain}`);
+      console.log(`      ${C.dim}seen ${wf.support}×, ${wf.uniqueCLIs} distinct CLIs${C.reset}`);
+    }
+    console.log();
+    if (withFlow && result.workflows.length > 0) {
+      const top = result.workflows[0];
+      const flowWorkflow = crossCliToFlowWorkflow(top);
+      const rendered = shouldUseColor(args2) ? flowToAnsi(flowWorkflow) : flowToString(flowWorkflow);
+      console.log(`${C.bold}Top cross-CLI workflow (visualized):${C.reset}`);
+      console.log(rendered);
+      console.log();
+    }
+  } catch (err) {
+    console.error(`Error: ${err.message}`);
+    process.exit(1);
   }
-  return null;
 }
 async function runArchaeologyCmd(args2) {
   let binary = null;
@@ -622,4 +801,4 @@ ${C.bold}${C.yellow}\uD83D\uDCA1 Skill suggestions:${C.reset}`);
   }
 }
 
-//# debugId=6575AA9BC14C249964756E2164756E21
+//# debugId=36C7EC67BF0C8B9764756E2164756E21

package/dist/cli.js.map

@@ -2,9 +2,9 @@
   "version": 3,
   "sources": ["../src/cli.ts"],
   "sourcesContent": [
-    "#!/usr/bin/env bun\nimport { parseHelpRecursive, parseHelp } from \"./parse\";\nimport { printTree, treeToString, treeToHtml } from \"./index\";\nimport type { TreeOptions } from \"./types\";\nimport { parseWorkflow, validateWorkflow, flowToAnsi, flowToString, flowToHtml } from \"./flow\";\nimport type { FlowRenderOptions } from \"./flow/types\";\nimport { mineCli, minedToFlowWorkflow } from \"./miner\";\nimport { runArchaeology, NullDelegate } from \"./archaeology\";\n\nconst args = process.argv.slice(2);\nconst subcommand = args[0];\n\nconst HELP_SUBCOMMANDS = new Set([\"flow\", \"mine\", \"archaeology\", \"safe-help\"]);\nconst isHelpFlag = args.includes(\"--help\") || args.includes(\"-h\");\n\nif (!subcommand || (isHelpFlag && !HELP_SUBCOMMANDS.has(subcommand ?? \"\"))) {\n\tprintMainHelp();\n\tprocess.exit(0);\n}\n\nif (isHelpFlag) {\n\tif (subcommand === \"flow\") printFlowHelp();\n\telse if (subcommand === \"mine\") printMineHelp();\n\telse if (subcommand === \"archaeology\") printArchaeologyHelp();\n\telse if (subcommand === \"safe-help\") printSafeHelpHelp();\n\telse printMainHelp();\n\tprocess.exit(0);\n}\n\nif (subcommand === \"flow\") {\n\tawait runFlow(args.slice(1));\n} else if (subcommand === \"mine\") {\n\tawait runMine(args.slice(1));\n} else if (subcommand === \"archaeology\") {\n\tawait runArchaeologyCmd(args.slice(1));\n} else if (subcommand === \"safe-help\") {\n\tawait runSafeHelp(args.slice(1));\n} else {\n\tawait runTree(args);\n}\n\nfunction printMainHelp() {\n\tconsole.log(`\n  clitree — Visualize and explore any CLI\n\n  Usage:\n    clitree <binary> [options]              Render command tree from --help\n    clitree flow <file> [options]           Render a workflow YAML as a DAG\n    clitree mine <binary> [options]         Mine shell history for workflows\n    clitree archaeology <binary> [options]  Full analysis: tree + mining + (LLM)\n    clitree safe-help <binary> [sub...]     Fetch clean help for any CLI (no pager, no overstriking)\n\n  Examples:\n    clitree docker                          # basic tree\n    clitree mine git                        # \"what workflows do I repeat with git?\"\n    clitree archaeology bun                 # tree + mining + LLM archaeology\n    clitree safe-help git commit            # avoid the git man-page pager trap\n\n  Subcommands:\n    tree          Parse --help output (default; passing a binary name invokes this)\n    flow          Render a workflow YAML file as an ASCII DAG\n    mine          Discover workflows from your shell history\n    archaeology   Run full analysis (tree + mine + LLM proposals when available)\n    safe-help     Return inline help for any CLI, handling pager/overstrike edge cases\n\n  Help for a subcommand: clitree <subcommand> --help\n`);\n}\n\nfunction printSafeHelpHelp() {\n\tconsole.log(`\n  clitree safe-help — Fetch clean help output for any CLI\n\n  Usage:\n    clitree safe-help <binary> [subcommand...] [options]\n\n  Why this exists:\n    Running '<cli> --help' directly is a minefield on agents and scripts:\n      - 'git commit --help' opens a pager in a TTY and hangs\n      - Piping 'git <sub> --help' returns nroff with overstrike (ffiixxuupp)\n      - Some CLIs use 'help <sub>' instead of '<sub> --help'\n      - macOS man pages emit \\\\b sequences that need col -bx\n\n    safe-help tries the right variants in order, cleans overstrikes, and\n    returns plain text every time.\n\n  Strategy (in order):\n    1. <cli> <sub> -h                        — short inline help\n    2. <cli> <sub> --help                    — long help (captured, overstrike-stripped)\n    3. <cli> help <sub>                      — alternate syntax\n    4. MANPAGER=cat man <cli>-<sub> | col -bx — final man fallback\n\n  Examples:\n    clitree safe-help git commit\n    clitree safe-help docker run\n    clitree safe-help kubectl get pods\n    clitree safe-help bun install\n\n  Options:\n    --no-color           Disable ANSI codes (auto-detects non-TTY)\n    -h, --help           Show this help\n`);\n}\n\nfunction printMineHelp() {\n\tconsole.log(`\n  clitree mine — Mine your shell history for CLI workflows\n\n  Usage:\n    clitree mine <binary> [options]\n\n  Examples:\n    clitree mine git\n    clitree mine docker --min-support 5 --with-flow\n    clitree mine bun --format json > bun-flows.json\n    clitree mine git --no-color | tee report.txt\n\n  Options:\n    --min-support <n>    Minimum occurrences to count as a workflow (default: 3)\n    --history-path <p>   Custom shell history path (default: ~/.zsh_history)\n    --format <fmt>       Output format: ansi (default), json\n    --max-paths <n>      Max workflows to show (default: 10)\n    --with-flow          Always render the top workflow as an ASCII DAG\n    --no-flow            Never render the DAG (overrides auto-detect)\n    --no-color           Disable ANSI colors (also auto-disabled when stdout is not a TTY)\n    -h, --help           Show this help\n\n  By default, the top workflow is rendered as a DAG only when it has 3+ steps.\n  Use --with-flow to force it on even for 2-step chains, or --no-flow to skip.\n`);\n}\n\nfunction printArchaeologyHelp() {\n\tconsole.log(`\n  clitree archaeology — Full CLI analysis: tree + mining + LLM archaeology\n\n  Usage:\n    clitree archaeology <binary> [options]\n\n  When run from the command line without a delegate, only the deterministic\n  phases run (help parsing + shell history mining). LLM archaeology requires\n  running inside the clitree skill (see ./skill/SKILL.md).\n\n  Examples:\n    clitree archaeology git                  # help + history\n    clitree archaeology docker --no-cache    # bypass cache\n    clitree archaeology bun --format json    # JSON output\n\n  Options:\n    --no-cache           Skip cache, always re-run\n    --max-depth <n>      Max --help recursion depth (default: 2)\n    --format <fmt>       Output format: ansi (default), json\n    --no-color           Disable ANSI colors (also auto-disabled when stdout is not a TTY)\n    -h, --help           Show this help\n`);\n}\n\nfunction printFlowHelp() {\n\tconsole.log(`\n  cli-tree flow — Render a CLI workflow YAML as a DAG\n\n  Usage:\n    cli-tree flow <file> [options]\n\n  Examples:\n    cli-tree flow workflows/git-pr-flow.yml\n    cli-tree flow my-workflow.yml --format html > flow.html\n    cli-tree flow workflows/docker-deploy.yml --compact --no-color\n\n  Options:\n    --compact          Hide description and legend\n    --no-color         Disable colors\n    --format <fmt>     Output format: ansi (default), string, html\n    --no-validate      Skip validation\n    -h, --help         Show this help\n`);\n}\n\nasync function runTree(args: string[]) {\n\tconst opts: TreeOptions = {\n\t\tcolor: true,\n\t\tshowFlags: true,\n\t\tshowArgs: true,\n\t\tshowDescriptions: true,\n\t\tshowTypes: true,\n\t\tshowDefaults: true,\n\t\tcompact: false,\n\t};\n\n\tlet depth = 2;\n\tlet format: \"ansi\" | \"string\" | \"html\" | \"json\" = \"ansi\";\n\tlet stdinName: string | null = null;\n\tlet binary: string | null = null;\n\n\topts.color = shouldUseColor(args);\n\n\tfor (let i = 0; i < args.length; i++) {\n\t\tconst arg = args[i]!;\n\t\tif (arg === \"--depth\" && args[i + 1]) {\n\t\t\tdepth = Number.parseInt(args[++i]!, 10);\n\t\t} else if (arg === \"--compact\") {\n\t\t\topts.compact = true;\n\t\t\topts.showDescriptions = false;\n\t\t} else if (arg === \"--no-flags\") {\n\t\t\topts.showFlags = false;\n\t\t} else if (arg === \"--no-args\") {\n\t\t\topts.showArgs = false;\n\t\t} else if (arg === \"--no-color\") {\n\t\t\topts.color = false;\n\t\t} else if (arg === \"--format\" && args[i + 1]) {\n\t\t\tformat = args[++i] as \"ansi\" | \"string\" | \"html\" | \"json\";\n\t\t} else if (arg === \"--stdin\" && args[i + 1]) {\n\t\t\tstdinName = args[++i]!;\n\t\t} else if (!arg.startsWith(\"-\")) {\n\t\t\tbinary = arg;\n\t\t}\n\t}\n\n\ttry {\n\t\tlet tree;\n\t\tif (stdinName) {\n\t\t\tconst input = await readStdin();\n\t\t\ttree = parseHelp(stdinName, input);\n\t\t} else if (binary) {\n\t\t\ttree = await parseHelpRecursive(binary, [], depth);\n\t\t} else {\n\t\t\tconsole.error(\"Error: provide a binary name or use --stdin <name>\");\n\t\t\tprocess.exit(1);\n\t\t}\n\n\t\tif (format === \"json\") {\n\t\t\tconsole.log(JSON.stringify(tree, null, 2));\n\t\t} else if (format === \"html\") {\n\t\t\tconsole.log(treeToHtml(tree, opts));\n\t\t} else if (format === \"string\") {\n\t\t\tconsole.log(treeToString(tree, opts));\n\t\t} else {\n\t\t\tprintTree(tree, opts);\n\t\t}\n\t} catch (err: any) {\n\t\tconsole.error(`Error: ${err.message}`);\n\t\tprocess.exit(1);\n\t}\n}\n\nasync function runFlow(args: string[]) {\n\tconst opts: FlowRenderOptions = {\n\t\tcolor: true,\n\t\tshowDescriptions: true,\n\t\tshowCommands: true,\n\t\tcompact: false,\n\t};\n\n\tlet format: \"ansi\" | \"string\" | \"html\" = \"ansi\";\n\tlet file: string | null = null;\n\tlet skipValidate = false;\n\n\tfor (let i = 0; i < args.length; i++) {\n\t\tconst arg = args[i]!;\n\t\tif (arg === \"--compact\") {\n\t\t\topts.compact = true;\n\t\t\topts.showDescriptions = false;\n\t\t} else if (arg === \"--no-color\") {\n\t\t\topts.color = false;\n\t\t} else if (arg === \"--no-validate\") {\n\t\t\tskipValidate = true;\n\t\t} else if (arg === \"--format\" && args[i + 1]) {\n\t\t\tformat = args[++i] as \"ansi\" | \"string\" | \"html\";\n\t\t} else if (!arg.startsWith(\"-\")) {\n\t\t\tfile = arg;\n\t\t}\n\t}\n\n\tif (!file) {\n\t\tconsole.error(\"Error: provide a workflow YAML file\");\n\t\tconsole.error(\"Run 'cli-tree flow --help' for usage\");\n\t\tprocess.exit(1);\n\t}\n\n\ttry {\n\t\tconst text = await Bun.file(file).text();\n\t\tconst workflow = parseWorkflow(text);\n\n\t\tif (!skipValidate) {\n\t\t\tconst result = validateWorkflow(workflow);\n\t\t\tfor (const err of result.errors) {\n\t\t\t\tconst prefix = err.severity === \"error\" ? \"\\x1b[31m✗\" : \"\\x1b[33m⚠\";\n\t\t\t\tconst reset = \"\\x1b[0m\";\n\t\t\t\tconst location = err.node ? ` [${err.node}]` : err.edge ? ` [${err.edge.from}→${err.edge.to}]` : \"\";\n\t\t\t\tconsole.error(`${prefix}${location} ${err.message}${reset}`);\n\t\t\t}\n\t\t\tif (!result.valid) process.exit(1);\n\t\t}\n\n\t\tif (format === \"html\") {\n\t\t\tconsole.log(flowToHtml(workflow, opts));\n\t\t} else if (format === \"string\") {\n\t\t\tconsole.log(flowToString(workflow, opts));\n\t\t} else {\n\t\t\tconsole.log(flowToAnsi(workflow, opts));\n\t\t}\n\t} catch (err: any) {\n\t\tconsole.error(`Error: ${err.message}`);\n\t\tprocess.exit(1);\n\t}\n}\n\nasync function readStdin(): Promise<string> {\n\tconst chunks: Buffer[] = [];\n\tfor await (const chunk of process.stdin) {\n\t\tchunks.push(chunk as Buffer);\n\t}\n\treturn Buffer.concat(chunks).toString(\"utf-8\");\n}\n\nfunction stripOverstrike(text: string): string {\n\t// Strip nroff bold via char\\bchar, underline via _\\bchar, and stray control chars.\n\t// This is what `col -bx` does.\n\treturn text\n\t\t.replace(/(.)\\b\\1/g, \"$1\")\n\t\t.replace(/_\\b(.)/g, \"$1\")\n\t\t.replace(/\\b/g, \"\")\n\t\t.replace(/\\x1b\\[[0-9;]*[a-zA-Z]/g, \"\");\n}\n\nfunction looksLikeHelp(text: string): boolean {\n\tif (!text.trim()) return false;\n\tif (text.length < 40) return false;\n\tconst firstChunk = text.slice(0, 200).toLowerCase();\n\t// Error messages from unknown subcommands or unsupported flags\n\tif (/(unknown|invalid|no such|not a \\w+ command|flag needs an argument|unrecognized)/.test(firstChunk)) {\n\t\treturn false;\n\t}\n\t// \"Run '... --help' for more information\" is a hint, not the help itself\n\tif (/run '.+' for more information/.test(firstChunk)) return false;\n\treturn true;\n}\n\nasync function tryHelpVariant(binary: string, argv: string[], timeoutMs = 5000): Promise<string | null> {\n\ttry {\n\t\tconst proc = Bun.spawn([binary, ...argv], {\n\t\t\tstdout: \"pipe\",\n\t\t\tstderr: \"pipe\",\n\t\t\tenv: { ...process.env, PAGER: \"cat\", MANPAGER: \"cat\", GIT_PAGER: \"cat\" },\n\t\t});\n\n\t\tconst timer = setTimeout(() => proc.kill(), timeoutMs);\n\n\t\tconst [stdout, stderr] = await Promise.all([\n\t\t\tnew Response(proc.stdout).text(),\n\t\t\tnew Response(proc.stderr).text(),\n\t\t]);\n\t\tclearTimeout(timer);\n\t\tawait proc.exited;\n\n\t\tconst combined = stdout || stderr;\n\t\tif (!looksLikeHelp(combined)) return null;\n\t\treturn stripOverstrike(combined);\n\t} catch {\n\t\treturn null;\n\t}\n}\n\nasync function tryManPage(binary: string, subPath: string[], timeoutMs = 5000): Promise<string | null> {\n\t// Try 'man binary-sub' (git-commit), then 'man binary sub' as a fallback.\n\tconst candidates = [\n\t\tsubPath.length > 0 ? [`${binary}-${subPath.join(\"-\")}`] : [binary],\n\t\t[binary, ...subPath],\n\t];\n\n\tfor (const args of candidates) {\n\t\ttry {\n\t\t\tconst proc = Bun.spawn([\"man\", ...args], {\n\t\t\t\tstdout: \"pipe\",\n\t\t\t\tstderr: \"pipe\",\n\t\t\t\tenv: { ...process.env, MANPAGER: \"cat\", PAGER: \"cat\" },\n\t\t\t});\n\n\t\t\tconst timer = setTimeout(() => proc.kill(), timeoutMs);\n\t\t\tconst [stdout] = await Promise.all([\n\t\t\t\tnew Response(proc.stdout).text(),\n\t\t\t\tnew Response(proc.stderr).text(),\n\t\t\t]);\n\t\t\tclearTimeout(timer);\n\t\t\tawait proc.exited;\n\n\t\t\tif (looksLikeHelp(stdout)) return stripOverstrike(stdout);\n\t\t} catch {}\n\t}\n\treturn null;\n}\n\nasync function runSafeHelp(args: string[]) {\n\tlet binary: string | null = null;\n\tconst subPath: string[] = [];\n\n\tfor (const arg of args) {\n\t\tif (arg === \"--no-color\" || arg === \"--help\" || arg === \"-h\") continue;\n\t\tif (!binary) {\n\t\t\tbinary = arg;\n\t\t} else {\n\t\t\tsubPath.push(arg);\n\t\t}\n\t}\n\n\tif (!binary) {\n\t\tconsole.error(\"Error: provide a binary name\");\n\t\tconsole.error(\"Run 'clitree safe-help --help' for usage\");\n\t\tprocess.exit(1);\n\t}\n\n\t// Strategy in order of preference:\n\t// 1. `<cli> <sub> -h`  — short inline help, no pager\n\t// 2. `<cli> <sub> --help` — long form, overstrike-stripped\n\t// 3. `<cli> help <sub>` — alternate syntax (git, go, bun)\n\t// 4. `man <cli>-<sub>` or `man <cli> <sub>` — final fallback\n\tconst variants: Array<{ label: string; args: string[] }> = [\n\t\t{ label: \"short help (-h)\", args: [...subPath, \"-h\"] },\n\t\t{ label: \"long help (--help)\", args: [...subPath, \"--help\"] },\n\t];\n\n\tif (subPath.length > 0) {\n\t\tvariants.push({ label: \"help subcommand\", args: [\"help\", ...subPath] });\n\t}\n\n\tfor (const variant of variants) {\n\t\tconst output = await tryHelpVariant(binary, variant.args);\n\t\tif (output) {\n\t\t\tprocess.stdout.write(output);\n\t\t\tif (!output.endsWith(\"\\n\")) process.stdout.write(\"\\n\");\n\t\t\treturn;\n\t\t}\n\t}\n\n\t// Last resort: man page\n\tconst manOutput = await tryManPage(binary, subPath);\n\tif (manOutput) {\n\t\tprocess.stdout.write(manOutput);\n\t\tif (!manOutput.endsWith(\"\\n\")) process.stdout.write(\"\\n\");\n\t\treturn;\n\t}\n\n\tconsole.error(`Error: could not fetch help for ${binary} ${subPath.join(\" \")}`);\n\tconsole.error(\"Tried: -h, --help, help subcommand, and man page.\");\n\tprocess.exit(1);\n}\n\nfunction shouldUseColor(args: string[]): boolean {\n\tif (args.includes(\"--no-color\")) return false;\n\tif (process.env.NO_COLOR) return false;\n\tif (process.env.FORCE_COLOR) return true;\n\treturn !!process.stdout.isTTY;\n}\n\nfunction makeColors(enabled: boolean) {\n\tif (!enabled) {\n\t\treturn { reset: \"\", bold: \"\", dim: \"\", cyan: \"\", green: \"\", yellow: \"\", red: \"\", magenta: \"\", gray: \"\" };\n\t}\n\treturn {\n\t\treset: \"\\x1b[0m\",\n\t\tbold: \"\\x1b[1m\",\n\t\tdim: \"\\x1b[2m\",\n\t\tcyan: \"\\x1b[36m\",\n\t\tgreen: \"\\x1b[32m\",\n\t\tyellow: \"\\x1b[33m\",\n\t\tred: \"\\x1b[31m\",\n\t\tmagenta: \"\\x1b[35m\",\n\t\tgray: \"\\x1b[90m\",\n\t};\n}\n\nasync function runMine(args: string[]) {\n\tlet binary: string | null = null;\n\tlet minSupport = 3;\n\tlet historyPath: string | undefined;\n\tlet format: \"ansi\" | \"json\" = \"ansi\";\n\tlet maxPaths = 10;\n\tlet withFlow: \"auto\" | \"on\" | \"off\" = \"auto\";\n\n\tfor (let i = 0; i < args.length; i++) {\n\t\tconst arg = args[i]!;\n\t\tif (arg === \"--min-support\" && args[i + 1]) {\n\t\t\tminSupport = Number.parseInt(args[++i]!, 10);\n\t\t} else if (arg === \"--history-path\" && args[i + 1]) {\n\t\t\thistoryPath = args[++i]!;\n\t\t} else if (arg === \"--format\" && args[i + 1]) {\n\t\t\tformat = args[++i] as \"ansi\" | \"json\";\n\t\t} else if (arg === \"--max-paths\" && args[i + 1]) {\n\t\t\tmaxPaths = Number.parseInt(args[++i]!, 10);\n\t\t} else if (arg === \"--with-flow\" || arg === \"--flow\") {\n\t\t\twithFlow = \"on\";\n\t\t} else if (arg === \"--no-flow\") {\n\t\t\twithFlow = \"off\";\n\t\t} else if (arg !== \"--no-color\" && !arg.startsWith(\"-\")) {\n\t\t\tbinary = arg;\n\t\t}\n\t}\n\n\tif (!binary) {\n\t\tconsole.error(\"Error: provide a binary name\");\n\t\tconsole.error(\"Run 'clitree mine --help' for usage\");\n\t\tprocess.exit(1);\n\t}\n\n\ttry {\n\t\tconst result = await mineCli(binary, { minSupport, historyPath });\n\n\t\tif (format === \"json\") {\n\t\t\tconsole.log(JSON.stringify(result, null, 2));\n\t\t\treturn;\n\t\t}\n\n\t\tconst C = makeColors(shouldUseColor(args));\n\n\t\tconsole.log(`\\n${C.bold}${C.magenta}${binary}${C.reset} ${C.gray}— shell history analysis${C.reset}\\n`);\n\t\tconsole.log(`${C.bold}Usage:${C.reset}`);\n\t\tconsole.log(`  ${C.dim}Invocations:${C.reset}  ${C.cyan}${result.stats.totalInvocations}${C.reset}`);\n\t\tconsole.log(`  ${C.dim}Subcommands:${C.reset}  ${C.cyan}${result.stats.uniqueSubcommands}${C.reset}`);\n\t\tconsole.log(`  ${C.dim}Sessions:${C.reset}     ${C.cyan}${result.sessionsAnalyzed}${C.reset}\\n`);\n\n\t\tif (result.stats.topSubcommands.length > 0) {\n\t\t\tconsole.log(`${C.bold}Top subcommands:${C.reset}`);\n\t\t\tconst max = result.stats.topSubcommands[0]!.count;\n\t\t\tfor (const { subcommand, count } of result.stats.topSubcommands.slice(0, 5)) {\n\t\t\t\tconst bar = \"█\".repeat(Math.max(1, Math.round((count / max) * 30)));\n\t\t\t\tconsole.log(`  ${C.green}${subcommand.padEnd(20)}${C.reset} ${C.cyan}${bar}${C.reset} ${C.dim}${count}${C.reset}`);\n\t\t\t}\n\t\t\tconsole.log();\n\t\t}\n\n\t\tif (result.workflows.length > 0) {\n\t\t\tconsole.log(`${C.bold}Discovered workflows:${C.reset}`);\n\t\t\tfor (const wf of result.workflows.slice(0, maxPaths)) {\n\t\t\t\tconst chain = wf.path[0]!.map(p => `${C.green}${p}${C.reset}`).join(` ${C.gray}→${C.reset} `);\n\t\t\t\tconsole.log(`  ${chain} ${C.dim}(${wf.support}×)${C.reset}`);\n\t\t\t}\n\t\t\tconsole.log();\n\t\t}\n\n\t\tif (result.suggestions.length > 0) {\n\t\t\tconsole.log(`${C.bold}${C.yellow}💡 Skill suggestions:${C.reset}`);\n\t\t\tfor (const s of result.suggestions.slice(0, 3)) {\n\t\t\t\tconst badge =\n\t\t\t\t\ts.priority === \"high\"\n\t\t\t\t\t\t? `${C.green}[HIGH]${C.reset}`\n\t\t\t\t\t\t: s.priority === \"medium\"\n\t\t\t\t\t\t\t? `${C.yellow}[MED]${C.reset}`\n\t\t\t\t\t\t\t: `${C.dim}[LOW]${C.reset}`;\n\t\t\t\tconsole.log(`\\n  ${badge} ${C.bold}/${s.name}${C.reset} — ${s.description}`);\n\t\t\t\tconsole.log(`    ${C.dim}${s.reason}${C.reset}`);\n\t\t\t\tconsole.log(`    ${C.dim}${s.commands.join(\" && \")}${C.reset}`);\n\t\t\t}\n\t\t\tconsole.log();\n\t\t}\n\n\t\t// Pick the top workflow worth visualizing as a DAG.\n\t\t// In \"auto\" mode, prefer the highest-support workflow with 3+ steps —\n\t\t// 2-step chains are more readable as text than as boxed diagrams.\n\t\t// In \"on\" mode, render whatever is the top regardless of length.\n\t\t// In \"off\" mode, skip.\n\t\tif (withFlow !== \"off\") {\n\t\t\tconst minSteps = withFlow === \"on\" ? 2 : 3;\n\t\t\tconst topForFlow = pickWorkflowForFlow(result.workflows, minSteps);\n\t\t\tif (topForFlow) {\n\t\t\t\tconst flowWorkflow = minedToFlowWorkflow(topForFlow);\n\t\t\t\tconst rendered = shouldUseColor(args) ? flowToAnsi(flowWorkflow) : flowToString(flowWorkflow);\n\t\t\t\tconsole.log(`${C.bold}Top workflow (visualized):${C.reset}`);\n\t\t\t\tconsole.log(rendered);\n\t\t\t\tconsole.log();\n\t\t\t}\n\t\t}\n\t} catch (err: any) {\n\t\tconsole.error(`Error: ${err.message}`);\n\t\tprocess.exit(1);\n\t}\n}\n\nfunction pickWorkflowForFlow<T extends { path: string[][]; support: number }>(\n\tworkflows: T[],\n\tminSteps = 3,\n): T | null {\n\tfor (const wf of workflows) {\n\t\tconst len = wf.path[0]?.length ?? 0;\n\t\tif (len >= minSteps) return wf;\n\t}\n\treturn null;\n}\n\nasync function runArchaeologyCmd(args: string[]) {\n\tlet binary: string | null = null;\n\tlet skipCache = false;\n\tlet maxDepth = 2;\n\tlet format: \"ansi\" | \"json\" = \"ansi\";\n\n\tfor (let i = 0; i < args.length; i++) {\n\t\tconst arg = args[i]!;\n\t\tif (arg === \"--no-cache\") {\n\t\t\tskipCache = true;\n\t\t} else if (arg === \"--max-depth\" && args[i + 1]) {\n\t\t\tmaxDepth = Number.parseInt(args[++i]!, 10);\n\t\t} else if (arg === \"--format\" && args[i + 1]) {\n\t\t\tformat = args[++i] as \"ansi\" | \"json\";\n\t\t} else if (arg !== \"--no-color\" && !arg.startsWith(\"-\")) {\n\t\t\tbinary = arg;\n\t\t}\n\t}\n\n\tif (!binary) {\n\t\tconsole.error(\"Error: provide a binary name\");\n\t\tconsole.error(\"Run 'clitree archaeology --help' for usage\");\n\t\tprocess.exit(1);\n\t}\n\n\tconst C = makeColors(shouldUseColor(args));\n\n\ttry {\n\t\tconsole.error(`${C.dim}⚠  LLM archaeology requires running inside the clitree skill.${C.reset}`);\n\t\tconsole.error(`${C.dim}   Running deterministic phases only (help + history mining).${C.reset}`);\n\t\tconsole.error(\"\");\n\n\t\tconst [arch, mine] = await Promise.all([\n\t\t\trunArchaeology(binary, new NullDelegate(), { skipCache, maxHelpDepth: maxDepth }),\n\t\t\tmineCli(binary, { minSupport: 3 }).catch(() => null),\n\t\t]);\n\n\t\tif (format === \"json\") {\n\t\t\tconsole.log(JSON.stringify({ archaeology: arch, mining: mine }, null, 2));\n\t\t\treturn;\n\t\t}\n\n\t\tconsole.log(`${C.bold}${C.magenta}${binary}${C.reset}`);\n\t\tif (arch.tree.description) {\n\t\t\tconsole.log(`${C.gray}${arch.tree.description}${C.reset}`);\n\t\t}\n\t\tconsole.log();\n\n\t\tconsole.log(`${C.bold}Tree:${C.reset}`);\n\t\tconsole.log(`  ${C.dim}Commands:${C.reset}  ${C.cyan}${arch.stats.helpCommands}${C.reset}`);\n\t\tconsole.log(`  ${C.dim}Cached:${C.reset}    ${arch.fromCache ? `${C.green}yes${C.reset}` : `${C.dim}no${C.reset}`}`);\n\t\tconsole.log();\n\n\t\tif (mine) {\n\t\t\tconsole.log(`${C.bold}Usage from shell history:${C.reset}`);\n\t\t\tconsole.log(`  ${C.dim}Invocations:${C.reset}  ${C.cyan}${mine.stats.totalInvocations}${C.reset}`);\n\t\t\tconsole.log(`  ${C.dim}Subcommands:${C.reset}  ${C.cyan}${mine.stats.uniqueSubcommands}${C.reset}`);\n\n\t\t\tif (mine.workflows.length > 0) {\n\t\t\t\tconsole.log(`\\n${C.bold}Workflows you repeat:${C.reset}`);\n\t\t\t\tfor (const wf of mine.workflows.slice(0, 5)) {\n\t\t\t\t\tconst chain = wf.path[0]!.map(p => `${C.green}${p}${C.reset}`).join(` ${C.gray}→${C.reset} `);\n\t\t\t\t\tconsole.log(`  ${chain} ${C.dim}(${wf.support}×)${C.reset}`);\n\t\t\t\t}\n\t\t\t}\n\n\t\t\tif (mine.suggestions.length > 0) {\n\t\t\t\tconsole.log(`\\n${C.bold}${C.yellow}💡 Skill suggestions:${C.reset}`);\n\t\t\t\tfor (const s of mine.suggestions.slice(0, 3)) {\n\t\t\t\t\tconsole.log(`  ${C.bold}/${s.name}${C.reset} — ${s.description}`);\n\t\t\t\t\tconsole.log(`    ${C.dim}${s.reason}${C.reset}`);\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\n\t\tconsole.log();\n\t\tconsole.log(`${C.dim}Install the clitree skill for full LLM archaeology:${C.reset}`);\n\t\tconsole.log(`${C.dim}  bash ./skill/install.sh${C.reset}`);\n\t\tconsole.log();\n\t} catch (err: any) {\n\t\tconsole.error(`${C.red}Error: ${err.message}${C.reset}`);\n\t\tprocess.exit(1);\n\t}\n}\n"
+    "#!/usr/bin/env bun\nimport { parseHelpRecursive, parseHelp } from \"./parse\";\nimport { printTree, treeToString, treeToHtml } from \"./index\";\nimport type { TreeOptions } from \"./types\";\nimport { parseWorkflow, validateWorkflow, flowToAnsi, flowToString, flowToHtml } from \"./flow\";\nimport type { FlowRenderOptions } from \"./flow/types\";\nimport {\n\tmineCli,\n\tminedToFlowWorkflow,\n\tmineCrossCli,\n\tcrossCliToFlowWorkflow,\n\tsparkline,\n\tlabeledSparkline,\n\tformatTimeRange,\n} from \"./miner\";\nimport { runArchaeology, NullDelegate } from \"./archaeology\";\n\nconst args = process.argv.slice(2);\nconst subcommand = args[0];\n\nconst HELP_SUBCOMMANDS = new Set([\"flow\", \"mine\", \"archaeology\", \"safe-help\", \"cross\"]);\nconst isHelpFlag = args.includes(\"--help\") || args.includes(\"-h\");\n\nif (!subcommand || (isHelpFlag && !HELP_SUBCOMMANDS.has(subcommand ?? \"\"))) {\n\tprintMainHelp();\n\tprocess.exit(0);\n}\n\nif (isHelpFlag) {\n\tif (subcommand === \"flow\") printFlowHelp();\n\telse if (subcommand === \"mine\") printMineHelp();\n\telse if (subcommand === \"archaeology\") printArchaeologyHelp();\n\telse if (subcommand === \"safe-help\") printSafeHelpHelp();\n\telse if (subcommand === \"cross\") printCrossHelp();\n\telse printMainHelp();\n\tprocess.exit(0);\n}\n\nif (subcommand === \"flow\") {\n\tawait runFlow(args.slice(1));\n} else if (subcommand === \"mine\") {\n\tawait runMine(args.slice(1));\n} else if (subcommand === \"archaeology\") {\n\tawait runArchaeologyCmd(args.slice(1));\n} else if (subcommand === \"safe-help\") {\n\tawait runSafeHelp(args.slice(1));\n} else if (subcommand === \"cross\") {\n\tawait runCross(args.slice(1));\n} else {\n\tawait runTree(args);\n}\n\nfunction printMainHelp() {\n\tconsole.log(`\n  clitree — Visualize and explore any CLI\n\n  Usage:\n    clitree <binary> [options]              Render command tree from --help\n    clitree flow <file> [options]           Render a workflow YAML as a DAG\n    clitree mine <binary> [options]         Mine shell history for workflows\n    clitree cross [options]                 Detect cross-CLI workflows (git + gh, docker + kubectl)\n    clitree archaeology <binary> [options]  Full analysis: tree + mining + (LLM)\n    clitree safe-help <binary> [sub...]     Fetch clean help for any CLI (no pager, no overstriking)\n\n  Examples:\n    clitree docker                          # basic tree\n    clitree mine git                        # \"what workflows do I repeat with git?\"\n    clitree cross                           # cross-CLI flows across your history\n    clitree archaeology bun                 # tree + mining + LLM archaeology\n    clitree safe-help git commit            # avoid the git man-page pager trap\n\n  Subcommands:\n    tree          Parse --help output (default; passing a binary name invokes this)\n    flow          Render a workflow YAML file as an ASCII DAG\n    mine          Discover workflows from your shell history (single CLI)\n    cross         Discover workflows that span multiple CLIs (e.g. git → gh)\n    archaeology   Run full analysis (tree + mine + LLM proposals when available)\n    safe-help     Return inline help for any CLI, handling pager/overstrike edge cases\n\n  Help for a subcommand: clitree <subcommand> --help\n`);\n}\n\nfunction printCrossHelp() {\n\tconsole.log(`\n  clitree cross — Mine cross-CLI workflows from your shell history\n\n  Usage:\n    clitree cross [options]\n\n  This is mineCli's bigger sibling. Instead of filtering history to a single\n  binary, it looks at every command in a session and finds sequences that weave\n  between tools — e.g.:\n\n    git push → gh pr create\n    docker build → docker push → kubectl apply\n    bun test → git commit → git push\n\n  These patterns are invisible to 'clitree mine <cli>' because they cross boundaries.\n\n  Examples:\n    clitree cross                           # top 10 cross-CLI workflows\n    clitree cross --top-k 5                 # just the top 5\n    clitree cross --only git,gh,docker      # restrict to a set of CLIs\n    clitree cross --format json             # raw data\n\n  Options:\n    --top-k <n>             Max workflows to return (default: 10)\n    --min-support <n>       Minimum occurrences (default: 3)\n    --min-path-length <n>   Minimum chain length (default: 2)\n    --max-path-length <n>   Maximum chain length (default: 5)\n    --min-distinct-clis <n> Require at least this many distinct CLIs (default: 2)\n    --only <csv>            Whitelist: only include these CLIs (comma-separated)\n    --format <fmt>          ansi (default) or json\n    --no-color              Disable ANSI colors\n    --no-flow               Skip DAG rendering of the top workflow\n    -h, --help              Show this help\n`);\n}\n\nfunction printSafeHelpHelp() {\n\tconsole.log(`\n  clitree safe-help — Fetch clean help output for any CLI\n\n  Usage:\n    clitree safe-help <binary> [subcommand...] [options]\n\n  Why this exists:\n    Running '<cli> --help' directly is a minefield on agents and scripts:\n      - 'git commit --help' opens a pager in a TTY and hangs\n      - Piping 'git <sub> --help' returns nroff with overstrike (ffiixxuupp)\n      - Some CLIs use 'help <sub>' instead of '<sub> --help'\n      - macOS man pages emit \\\\b sequences that need col -bx\n\n    safe-help tries the right variants in order, cleans overstrikes, and\n    returns plain text every time.\n\n  Strategy (in order):\n    1. <cli> <sub> -h                        — short inline help\n    2. <cli> <sub> --help                    — long help (captured, overstrike-stripped)\n    3. <cli> help <sub>                      — alternate syntax\n    4. MANPAGER=cat man <cli>-<sub> | col -bx — final man fallback\n\n  Examples:\n    clitree safe-help git commit\n    clitree safe-help docker run\n    clitree safe-help kubectl get pods\n    clitree safe-help bun install\n\n  Options:\n    --no-color           Disable ANSI codes (auto-detects non-TTY)\n    -h, --help           Show this help\n`);\n}\n\nfunction printMineHelp() {\n\tconsole.log(`\n  clitree mine — Mine your shell history for CLI workflows\n\n  Usage:\n    clitree mine <binary> [options]\n\n  Examples:\n    clitree mine git\n    clitree mine git --top-k 3                    # render top 3 workflows as DAGs\n    clitree mine docker --min-support 5 --with-flow\n    clitree mine bun --format json > bun-flows.json\n    clitree mine git --no-color | tee report.txt\n    clitree mine git --no-activity                # skip temporal sparklines\n\n  Options:\n    --min-support <n>    Minimum occurrences to count as a workflow (default: 3)\n    --history-path <p>   Custom shell history path (default: ~/.zsh_history)\n    --format <fmt>       Output format: ansi (default), json\n    --max-paths <n>      Max workflows to show in text list (default: 10)\n    --top-k <n>          Render top N workflows as DAGs (default: 1)\n    --with-flow          Include 2-step workflows in DAG rendering\n    --no-flow            Skip DAG rendering entirely\n    --no-activity        Skip hour/day/30-day activity sparklines\n    --no-color           Disable ANSI colors (also auto-disabled when stdout is not a TTY)\n    -h, --help           Show this help\n\n  By default, the top 3+ step workflow is rendered as a DAG.\n  --top-k bumps that to N distinct workflows stacked on top of each other.\n`);\n}\n\nfunction printArchaeologyHelp() {\n\tconsole.log(`\n  clitree archaeology — Full CLI analysis: tree + mining + LLM archaeology\n\n  Usage:\n    clitree archaeology <binary> [options]\n\n  When run from the command line without a delegate, only the deterministic\n  phases run (help parsing + shell history mining). LLM archaeology requires\n  running inside the clitree skill (see ./skill/SKILL.md).\n\n  Examples:\n    clitree archaeology git                  # help + history\n    clitree archaeology docker --no-cache    # bypass cache\n    clitree archaeology bun --format json    # JSON output\n\n  Options:\n    --no-cache           Skip cache, always re-run\n    --max-depth <n>      Max --help recursion depth (default: 2)\n    --format <fmt>       Output format: ansi (default), json\n    --no-color           Disable ANSI colors (also auto-disabled when stdout is not a TTY)\n    -h, --help           Show this help\n`);\n}\n\nfunction printFlowHelp() {\n\tconsole.log(`\n  cli-tree flow — Render a CLI workflow YAML as a DAG\n\n  Usage:\n    cli-tree flow <file> [options]\n\n  Examples:\n    cli-tree flow workflows/git-pr-flow.yml\n    cli-tree flow my-workflow.yml --format html > flow.html\n    cli-tree flow workflows/docker-deploy.yml --compact --no-color\n\n  Options:\n    --compact          Hide description and legend\n    --no-color         Disable colors\n    --format <fmt>     Output format: ansi (default), string, html\n    --no-validate      Skip validation\n    -h, --help         Show this help\n`);\n}\n\nasync function runTree(args: string[]) {\n\tconst opts: TreeOptions = {\n\t\tcolor: true,\n\t\tshowFlags: true,\n\t\tshowArgs: true,\n\t\tshowDescriptions: true,\n\t\tshowTypes: true,\n\t\tshowDefaults: true,\n\t\tcompact: false,\n\t};\n\n\tlet depth = 2;\n\tlet format: \"ansi\" | \"string\" | \"html\" | \"json\" = \"ansi\";\n\tlet stdinName: string | null = null;\n\tlet binary: string | null = null;\n\n\topts.color = shouldUseColor(args);\n\n\tfor (let i = 0; i < args.length; i++) {\n\t\tconst arg = args[i]!;\n\t\tif (arg === \"--depth\" && args[i + 1]) {\n\t\t\tdepth = Number.parseInt(args[++i]!, 10);\n\t\t} else if (arg === \"--compact\") {\n\t\t\topts.compact = true;\n\t\t\topts.showDescriptions = false;\n\t\t} else if (arg === \"--no-flags\") {\n\t\t\topts.showFlags = false;\n\t\t} else if (arg === \"--no-args\") {\n\t\t\topts.showArgs = false;\n\t\t} else if (arg === \"--no-color\") {\n\t\t\topts.color = false;\n\t\t} else if (arg === \"--format\" && args[i + 1]) {\n\t\t\tformat = args[++i] as \"ansi\" | \"string\" | \"html\" | \"json\";\n\t\t} else if (arg === \"--stdin\" && args[i + 1]) {\n\t\t\tstdinName = args[++i]!;\n\t\t} else if (!arg.startsWith(\"-\")) {\n\t\t\tbinary = arg;\n\t\t}\n\t}\n\n\ttry {\n\t\tlet tree;\n\t\tif (stdinName) {\n\t\t\tconst input = await readStdin();\n\t\t\ttree = parseHelp(stdinName, input);\n\t\t} else if (binary) {\n\t\t\ttree = await parseHelpRecursive(binary, [], depth);\n\t\t} else {\n\t\t\tconsole.error(\"Error: provide a binary name or use --stdin <name>\");\n\t\t\tprocess.exit(1);\n\t\t}\n\n\t\tif (format === \"json\") {\n\t\t\tconsole.log(JSON.stringify(tree, null, 2));\n\t\t} else if (format === \"html\") {\n\t\t\tconsole.log(treeToHtml(tree, opts));\n\t\t} else if (format === \"string\") {\n\t\t\tconsole.log(treeToString(tree, opts));\n\t\t} else {\n\t\t\tprintTree(tree, opts);\n\t\t}\n\t} catch (err: any) {\n\t\tconsole.error(`Error: ${err.message}`);\n\t\tprocess.exit(1);\n\t}\n}\n\nasync function runFlow(args: string[]) {\n\tconst opts: FlowRenderOptions = {\n\t\tcolor: true,\n\t\tshowDescriptions: true,\n\t\tshowCommands: true,\n\t\tcompact: false,\n\t};\n\n\tlet format: \"ansi\" | \"string\" | \"html\" = \"ansi\";\n\tlet file: string | null = null;\n\tlet skipValidate = false;\n\n\tfor (let i = 0; i < args.length; i++) {\n\t\tconst arg = args[i]!;\n\t\tif (arg === \"--compact\") {\n\t\t\topts.compact = true;\n\t\t\topts.showDescriptions = false;\n\t\t} else if (arg === \"--no-color\") {\n\t\t\topts.color = false;\n\t\t} else if (arg === \"--no-validate\") {\n\t\t\tskipValidate = true;\n\t\t} else if (arg === \"--format\" && args[i + 1]) {\n\t\t\tformat = args[++i] as \"ansi\" | \"string\" | \"html\";\n\t\t} else if (!arg.startsWith(\"-\")) {\n\t\t\tfile = arg;\n\t\t}\n\t}\n\n\tif (!file) {\n\t\tconsole.error(\"Error: provide a workflow YAML file\");\n\t\tconsole.error(\"Run 'cli-tree flow --help' for usage\");\n\t\tprocess.exit(1);\n\t}\n\n\ttry {\n\t\tconst text = await Bun.file(file).text();\n\t\tconst workflow = parseWorkflow(text);\n\n\t\tif (!skipValidate) {\n\t\t\tconst result = validateWorkflow(workflow);\n\t\t\tfor (const err of result.errors) {\n\t\t\t\tconst prefix = err.severity === \"error\" ? \"\\x1b[31m✗\" : \"\\x1b[33m⚠\";\n\t\t\t\tconst reset = \"\\x1b[0m\";\n\t\t\t\tconst location = err.node ? ` [${err.node}]` : err.edge ? ` [${err.edge.from}→${err.edge.to}]` : \"\";\n\t\t\t\tconsole.error(`${prefix}${location} ${err.message}${reset}`);\n\t\t\t}\n\t\t\tif (!result.valid) process.exit(1);\n\t\t}\n\n\t\tif (format === \"html\") {\n\t\t\tconsole.log(flowToHtml(workflow, opts));\n\t\t} else if (format === \"string\") {\n\t\t\tconsole.log(flowToString(workflow, opts));\n\t\t} else {\n\t\t\tconsole.log(flowToAnsi(workflow, opts));\n\t\t}\n\t} catch (err: any) {\n\t\tconsole.error(`Error: ${err.message}`);\n\t\tprocess.exit(1);\n\t}\n}\n\nasync function readStdin(): Promise<string> {\n\tconst chunks: Buffer[] = [];\n\tfor await (const chunk of process.stdin) {\n\t\tchunks.push(chunk as Buffer);\n\t}\n\treturn Buffer.concat(chunks).toString(\"utf-8\");\n}\n\nfunction stripOverstrike(text: string): string {\n\t// Strip nroff bold via char\\bchar, underline via _\\bchar, and stray control chars.\n\t// This is what `col -bx` does.\n\treturn text\n\t\t.replace(/(.)\\b\\1/g, \"$1\")\n\t\t.replace(/_\\b(.)/g, \"$1\")\n\t\t.replace(/\\b/g, \"\")\n\t\t.replace(/\\x1b\\[[0-9;]*[a-zA-Z]/g, \"\");\n}\n\nfunction looksLikeHelp(text: string): boolean {\n\tif (!text.trim()) return false;\n\tif (text.length < 40) return false;\n\tconst firstChunk = text.slice(0, 200).toLowerCase();\n\t// Error messages from unknown subcommands or unsupported flags\n\tif (/(unknown|invalid|no such|not a \\w+ command|flag needs an argument|unrecognized)/.test(firstChunk)) {\n\t\treturn false;\n\t}\n\t// \"Run '... --help' for more information\" is a hint, not the help itself\n\tif (/run '.+' for more information/.test(firstChunk)) return false;\n\treturn true;\n}\n\nasync function tryHelpVariant(binary: string, argv: string[], timeoutMs = 5000): Promise<string | null> {\n\ttry {\n\t\tconst proc = Bun.spawn([binary, ...argv], {\n\t\t\tstdout: \"pipe\",\n\t\t\tstderr: \"pipe\",\n\t\t\tenv: { ...process.env, PAGER: \"cat\", MANPAGER: \"cat\", GIT_PAGER: \"cat\" },\n\t\t});\n\n\t\tconst timer = setTimeout(() => proc.kill(), timeoutMs);\n\n\t\tconst [stdout, stderr] = await Promise.all([\n\t\t\tnew Response(proc.stdout).text(),\n\t\t\tnew Response(proc.stderr).text(),\n\t\t]);\n\t\tclearTimeout(timer);\n\t\tawait proc.exited;\n\n\t\tconst combined = stdout || stderr;\n\t\tif (!looksLikeHelp(combined)) return null;\n\t\treturn stripOverstrike(combined);\n\t} catch {\n\t\treturn null;\n\t}\n}\n\nasync function tryManPage(binary: string, subPath: string[], timeoutMs = 5000): Promise<string | null> {\n\t// Try 'man binary-sub' (git-commit), then 'man binary sub' as a fallback.\n\tconst candidates = [\n\t\tsubPath.length > 0 ? [`${binary}-${subPath.join(\"-\")}`] : [binary],\n\t\t[binary, ...subPath],\n\t];\n\n\tfor (const args of candidates) {\n\t\ttry {\n\t\t\tconst proc = Bun.spawn([\"man\", ...args], {\n\t\t\t\tstdout: \"pipe\",\n\t\t\t\tstderr: \"pipe\",\n\t\t\t\tenv: { ...process.env, MANPAGER: \"cat\", PAGER: \"cat\" },\n\t\t\t});\n\n\t\t\tconst timer = setTimeout(() => proc.kill(), timeoutMs);\n\t\t\tconst [stdout] = await Promise.all([\n\t\t\t\tnew Response(proc.stdout).text(),\n\t\t\t\tnew Response(proc.stderr).text(),\n\t\t\t]);\n\t\t\tclearTimeout(timer);\n\t\t\tawait proc.exited;\n\n\t\t\tif (looksLikeHelp(stdout)) return stripOverstrike(stdout);\n\t\t} catch {}\n\t}\n\treturn null;\n}\n\nasync function runSafeHelp(args: string[]) {\n\tlet binary: string | null = null;\n\tconst subPath: string[] = [];\n\n\tfor (const arg of args) {\n\t\tif (arg === \"--no-color\" || arg === \"--help\" || arg === \"-h\") continue;\n\t\tif (!binary) {\n\t\t\tbinary = arg;\n\t\t} else {\n\t\t\tsubPath.push(arg);\n\t\t}\n\t}\n\n\tif (!binary) {\n\t\tconsole.error(\"Error: provide a binary name\");\n\t\tconsole.error(\"Run 'clitree safe-help --help' for usage\");\n\t\tprocess.exit(1);\n\t}\n\n\t// Strategy in order of preference:\n\t// 1. `<cli> <sub> -h`  — short inline help, no pager\n\t// 2. `<cli> <sub> --help` — long form, overstrike-stripped\n\t// 3. `<cli> help <sub>` — alternate syntax (git, go, bun)\n\t// 4. `man <cli>-<sub>` or `man <cli> <sub>` — final fallback\n\tconst variants: Array<{ label: string; args: string[] }> = [\n\t\t{ label: \"short help (-h)\", args: [...subPath, \"-h\"] },\n\t\t{ label: \"long help (--help)\", args: [...subPath, \"--help\"] },\n\t];\n\n\tif (subPath.length > 0) {\n\t\tvariants.push({ label: \"help subcommand\", args: [\"help\", ...subPath] });\n\t}\n\n\tfor (const variant of variants) {\n\t\tconst output = await tryHelpVariant(binary, variant.args);\n\t\tif (output) {\n\t\t\tprocess.stdout.write(output);\n\t\t\tif (!output.endsWith(\"\\n\")) process.stdout.write(\"\\n\");\n\t\t\treturn;\n\t\t}\n\t}\n\n\t// Last resort: man page\n\tconst manOutput = await tryManPage(binary, subPath);\n\tif (manOutput) {\n\t\tprocess.stdout.write(manOutput);\n\t\tif (!manOutput.endsWith(\"\\n\")) process.stdout.write(\"\\n\");\n\t\treturn;\n\t}\n\n\tconsole.error(`Error: could not fetch help for ${binary} ${subPath.join(\" \")}`);\n\tconsole.error(\"Tried: -h, --help, help subcommand, and man page.\");\n\tprocess.exit(1);\n}\n\nfunction shouldUseColor(args: string[]): boolean {\n\tif (args.includes(\"--no-color\")) return false;\n\tif (process.env.NO_COLOR) return false;\n\tif (process.env.FORCE_COLOR) return true;\n\treturn !!process.stdout.isTTY;\n}\n\nfunction makeColors(enabled: boolean) {\n\tif (!enabled) {\n\t\treturn { reset: \"\", bold: \"\", dim: \"\", cyan: \"\", green: \"\", yellow: \"\", red: \"\", magenta: \"\", gray: \"\" };\n\t}\n\treturn {\n\t\treset: \"\\x1b[0m\",\n\t\tbold: \"\\x1b[1m\",\n\t\tdim: \"\\x1b[2m\",\n\t\tcyan: \"\\x1b[36m\",\n\t\tgreen: \"\\x1b[32m\",\n\t\tyellow: \"\\x1b[33m\",\n\t\tred: \"\\x1b[31m\",\n\t\tmagenta: \"\\x1b[35m\",\n\t\tgray: \"\\x1b[90m\",\n\t};\n}\n\nasync function runMine(args: string[]) {\n\tlet binary: string | null = null;\n\tlet minSupport = 3;\n\tlet historyPath: string | undefined;\n\tlet format: \"ansi\" | \"json\" = \"ansi\";\n\tlet maxPaths = 10;\n\tlet withFlow: \"auto\" | \"on\" | \"off\" = \"auto\";\n\tlet topK = 1;\n\tlet showActivity = true;\n\n\tfor (let i = 0; i < args.length; i++) {\n\t\tconst arg = args[i]!;\n\t\tif (arg === \"--min-support\" && args[i + 1]) {\n\t\t\tminSupport = Number.parseInt(args[++i]!, 10);\n\t\t} else if (arg === \"--history-path\" && args[i + 1]) {\n\t\t\thistoryPath = args[++i]!;\n\t\t} else if (arg === \"--format\" && args[i + 1]) {\n\t\t\tformat = args[++i] as \"ansi\" | \"json\";\n\t\t} else if (arg === \"--max-paths\" && args[i + 1]) {\n\t\t\tmaxPaths = Number.parseInt(args[++i]!, 10);\n\t\t} else if (arg === \"--top-k\" && args[i + 1]) {\n\t\t\ttopK = Number.parseInt(args[++i]!, 10);\n\t\t\tif (withFlow === \"auto\") withFlow = \"on\";\n\t\t} else if (arg === \"--with-flow\" || arg === \"--flow\") {\n\t\t\twithFlow = \"on\";\n\t\t} else if (arg === \"--no-flow\") {\n\t\t\twithFlow = \"off\";\n\t\t} else if (arg === \"--no-activity\") {\n\t\t\tshowActivity = false;\n\t\t} else if (arg !== \"--no-color\" && !arg.startsWith(\"-\")) {\n\t\t\tbinary = arg;\n\t\t}\n\t}\n\n\tif (!binary) {\n\t\tconsole.error(\"Error: provide a binary name\");\n\t\tconsole.error(\"Run 'clitree mine --help' for usage\");\n\t\tprocess.exit(1);\n\t}\n\n\ttry {\n\t\tconst result = await mineCli(binary, { minSupport, historyPath });\n\n\t\tif (format === \"json\") {\n\t\t\tconsole.log(JSON.stringify(result, null, 2));\n\t\t\treturn;\n\t\t}\n\n\t\tconst C = makeColors(shouldUseColor(args));\n\n\t\tconsole.log(`\\n${C.bold}${C.magenta}${binary}${C.reset} ${C.gray}— shell history analysis${C.reset}\\n`);\n\t\tconsole.log(`${C.bold}Usage:${C.reset}`);\n\t\tconsole.log(`  ${C.dim}Invocations:${C.reset}  ${C.cyan}${result.stats.totalInvocations}${C.reset}`);\n\t\tconsole.log(`  ${C.dim}Subcommands:${C.reset}  ${C.cyan}${result.stats.uniqueSubcommands}${C.reset}`);\n\t\tconsole.log(`  ${C.dim}Sessions:${C.reset}     ${C.cyan}${result.sessionsAnalyzed}${C.reset}\\n`);\n\n\t\tif (result.stats.topSubcommands.length > 0) {\n\t\t\tconsole.log(`${C.bold}Top subcommands:${C.reset}`);\n\t\t\tconst max = result.stats.topSubcommands[0]!.count;\n\t\t\tfor (const { subcommand, count } of result.stats.topSubcommands.slice(0, 5)) {\n\t\t\t\tconst bar = \"█\".repeat(Math.max(1, Math.round((count / max) * 30)));\n\t\t\t\tconsole.log(`  ${C.green}${subcommand.padEnd(20)}${C.reset} ${C.cyan}${bar}${C.reset} ${C.dim}${count}${C.reset}`);\n\t\t\t}\n\t\t\tconsole.log();\n\t\t}\n\n\t\tif (showActivity && result.activity.total > 0) {\n\t\t\trenderActivitySection(result.activity, C);\n\t\t}\n\n\t\tif (result.workflows.length > 0) {\n\t\t\tconsole.log(`${C.bold}Discovered workflows:${C.reset}`);\n\t\t\tfor (const wf of result.workflows.slice(0, maxPaths)) {\n\t\t\t\tconst chain = wf.path[0]!.map(p => `${C.green}${p}${C.reset}`).join(` ${C.gray}→${C.reset} `);\n\t\t\t\tconsole.log(`  ${chain} ${C.dim}(${wf.support}×)${C.reset}`);\n\t\t\t}\n\t\t\tconsole.log();\n\t\t}\n\n\t\tif (result.suggestions.length > 0) {\n\t\t\tconsole.log(`${C.bold}${C.yellow}💡 Skill suggestions:${C.reset}`);\n\t\t\tfor (const s of result.suggestions.slice(0, 3)) {\n\t\t\t\tconst badge =\n\t\t\t\t\ts.priority === \"high\"\n\t\t\t\t\t\t? `${C.green}[HIGH]${C.reset}`\n\t\t\t\t\t\t: s.priority === \"medium\"\n\t\t\t\t\t\t\t? `${C.yellow}[MED]${C.reset}`\n\t\t\t\t\t\t\t: `${C.dim}[LOW]${C.reset}`;\n\t\t\t\tconsole.log(`\\n  ${badge} ${C.bold}/${s.name}${C.reset} — ${s.description}`);\n\t\t\t\tconsole.log(`    ${C.dim}${s.reason}${C.reset}`);\n\t\t\t\tconsole.log(`    ${C.dim}${s.commands.join(\" && \")}${C.reset}`);\n\t\t\t}\n\t\t\tconsole.log();\n\t\t}\n\n\t\t// Pick the top-K workflows worth visualizing as DAGs.\n\t\t// Auto mode renders only the first 3+ step workflow.\n\t\t// `--top-k N` renders up to N distinct workflows (skipping shorter 2-step ones by default).\n\t\tif (withFlow !== \"off\") {\n\t\t\tconst minSteps = withFlow === \"on\" ? 2 : 3;\n\t\t\tconst topK_effective = Math.max(1, topK);\n\t\t\tconst candidates = pickWorkflowsForFlow(result.workflows, minSteps, topK_effective);\n\n\t\t\tif (candidates.length > 0) {\n\t\t\t\tconst header = candidates.length === 1 ? \"Top workflow (visualized):\" : `Top ${candidates.length} workflows (visualized):`;\n\t\t\t\tconsole.log(`${C.bold}${header}${C.reset}`);\n\t\t\t\tfor (let i = 0; i < candidates.length; i++) {\n\t\t\t\t\tif (i > 0) console.log(`${C.gray}${\"─\".repeat(60)}${C.reset}`);\n\t\t\t\t\tconst flowWorkflow = minedToFlowWorkflow(candidates[i]!);\n\t\t\t\t\tconst rendered = shouldUseColor(args) ? flowToAnsi(flowWorkflow) : flowToString(flowWorkflow);\n\t\t\t\t\tconsole.log(rendered);\n\t\t\t\t}\n\t\t\t\tconsole.log();\n\t\t\t}\n\t\t}\n\t} catch (err: any) {\n\t\tconsole.error(`Error: ${err.message}`);\n\t\tprocess.exit(1);\n\t}\n}\n\nfunction renderActivitySection(\n\tactivity: { hourOfDay: number[]; dayOfWeek: number[]; last30Days: number[]; firstSeen: number; lastSeen: number; total: number },\n\tC: ReturnType<typeof makeColors>,\n) {\n\t// Only show if we have timestamp data\n\tif (activity.firstSeen === 0) return;\n\n\tconst dayNames = [\"Sun\", \"Mon\", \"Tue\", \"Wed\", \"Thu\", \"Fri\", \"Sat\"];\n\tconsole.log(`${C.bold}Activity:${C.reset}`);\n\n\tconst range = formatTimeRange(activity.firstSeen, activity.lastSeen);\n\tconsole.log(`  ${C.dim}Tracked over:${C.reset} ${C.cyan}${range}${C.reset}`);\n\n\t// Hour-of-day sparkline (24 chars wide)\n\tconst hourSpark = sparkline(activity.hourOfDay);\n\tconsole.log(`  ${C.dim}Hour of day: ${C.reset}${C.cyan}${hourSpark}${C.reset} ${C.dim}(0h → 23h)${C.reset}`);\n\n\t// Day-of-week mini bars\n\tconst dowMax = Math.max(...activity.dayOfWeek);\n\tif (dowMax > 0) {\n\t\tconsole.log(`  ${C.dim}Day of week:${C.reset}`);\n\t\tfor (let i = 0; i < 7; i++) {\n\t\t\tconst count = activity.dayOfWeek[i]!;\n\t\t\tconst barLen = dowMax > 0 ? Math.round((count / dowMax) * 20) : 0;\n\t\t\tconst bar = \"█\".repeat(Math.max(count > 0 ? 1 : 0, barLen));\n\t\t\tconsole.log(`    ${C.gray}${dayNames[i]}${C.reset} ${C.cyan}${bar}${C.reset} ${C.dim}${count}${C.reset}`);\n\t\t}\n\t}\n\n\t// Last 30 days sparkline\n\tif (activity.last30Days.some(v => v > 0)) {\n\t\tconst monthSpark = sparkline(activity.last30Days);\n\t\tconsole.log(`  ${C.dim}Last 30 days:${C.reset} ${C.cyan}${monthSpark}${C.reset} ${C.dim}(30d ago → today)${C.reset}`);\n\t}\n\tconsole.log();\n}\n\nfunction pickWorkflowForFlow<T extends { path: string[][]; support: number }>(\n\tworkflows: T[],\n\tminSteps = 3,\n): T | null {\n\tconst picked = pickWorkflowsForFlow(workflows, minSteps, 1);\n\treturn picked[0] ?? null;\n}\n\nfunction pickWorkflowsForFlow<T extends { path: string[][]; support: number }>(\n\tworkflows: T[],\n\tminSteps: number,\n\ttopK: number,\n): T[] {\n\tconst result: T[] = [];\n\tconst signatures = new Set<string>();\n\tfor (const wf of workflows) {\n\t\tconst len = wf.path[0]?.length ?? 0;\n\t\tif (len < minSteps) continue;\n\t\tconst sig = wf.path[0]!.join(\" → \");\n\t\tif (signatures.has(sig)) continue;\n\t\tsignatures.add(sig);\n\t\tresult.push(wf);\n\t\tif (result.length >= topK) break;\n\t}\n\treturn result;\n}\n\nasync function runCross(args: string[]) {\n\tlet format: \"ansi\" | \"json\" = \"ansi\";\n\tlet topK = 10;\n\tlet minSupport = 3;\n\tlet minPathLength = 2;\n\tlet maxPathLength = 5;\n\tlet minDistinctCLIs = 2;\n\tlet onlyList: string[] = [];\n\tlet withFlow = true;\n\n\tfor (let i = 0; i < args.length; i++) {\n\t\tconst arg = args[i]!;\n\t\tif (arg === \"--top-k\" && args[i + 1]) {\n\t\t\ttopK = Number.parseInt(args[++i]!, 10);\n\t\t} else if (arg === \"--min-support\" && args[i + 1]) {\n\t\t\tminSupport = Number.parseInt(args[++i]!, 10);\n\t\t} else if (arg === \"--min-path-length\" && args[i + 1]) {\n\t\t\tminPathLength = Number.parseInt(args[++i]!, 10);\n\t\t} else if (arg === \"--max-path-length\" && args[i + 1]) {\n\t\t\tmaxPathLength = Number.parseInt(args[++i]!, 10);\n\t\t} else if (arg === \"--min-distinct-clis\" && args[i + 1]) {\n\t\t\tminDistinctCLIs = Number.parseInt(args[++i]!, 10);\n\t\t} else if (arg === \"--only\" && args[i + 1]) {\n\t\t\tonlyList = args[++i]!.split(\",\").map(s => s.trim()).filter(Boolean);\n\t\t} else if (arg === \"--format\" && args[i + 1]) {\n\t\t\tformat = args[++i] as \"ansi\" | \"json\";\n\t\t} else if (arg === \"--no-flow\") {\n\t\t\twithFlow = false;\n\t\t}\n\t}\n\n\ttry {\n\t\tconst result = await mineCrossCli({\n\t\t\ttopK,\n\t\t\tminSupport,\n\t\t\tminPathLength,\n\t\t\tmaxPathLength,\n\t\t\tminDistinctCLIs,\n\t\t\tallowedCLIs: onlyList.length > 0 ? onlyList : undefined,\n\t\t});\n\n\t\tif (format === \"json\") {\n\t\t\tconsole.log(JSON.stringify(result, null, 2));\n\t\t\treturn;\n\t\t}\n\n\t\tconst C = makeColors(shouldUseColor(args));\n\n\t\tconsole.log(`\\n${C.bold}${C.magenta}cross-CLI workflow analysis${C.reset}\\n`);\n\t\tconsole.log(`${C.bold}Scope:${C.reset}`);\n\t\tconsole.log(`  ${C.dim}Sessions analyzed:${C.reset}  ${C.cyan}${result.sessionsAnalyzed}${C.reset}`);\n\t\tconsole.log(`  ${C.dim}Distinct CLIs:${C.reset}      ${C.cyan}${result.distinctCLIs.length}${C.reset}`);\n\t\tconsole.log(`  ${C.dim}Transitions:${C.reset}        ${C.cyan}${result.totalTransitions}${C.reset}\\n`);\n\n\t\tif (result.workflows.length === 0) {\n\t\t\tconsole.log(`${C.dim}No cross-CLI workflows found. Try lowering --min-support or --min-distinct-clis.${C.reset}\\n`);\n\t\t\treturn;\n\t\t}\n\n\t\tconsole.log(`${C.bold}Cross-CLI workflows (top ${result.workflows.length}):${C.reset}`);\n\t\tfor (let i = 0; i < result.workflows.length; i++) {\n\t\t\tconst wf = result.workflows[i]!;\n\t\t\tconst chain = wf.path\n\t\t\t\t.map(s => `${C.green}${s.cli}${C.reset} ${C.cyan}${s.subcommand}${C.reset}`)\n\t\t\t\t.join(` ${C.gray}→${C.reset} `);\n\t\t\tconsole.log(`  ${C.dim}${(i + 1).toString().padStart(2)}.${C.reset} ${chain}`);\n\t\t\tconsole.log(`      ${C.dim}seen ${wf.support}×, ${wf.uniqueCLIs} distinct CLIs${C.reset}`);\n\t\t}\n\t\tconsole.log();\n\n\t\tif (withFlow && result.workflows.length > 0) {\n\t\t\tconst top = result.workflows[0]!;\n\t\t\tconst flowWorkflow = crossCliToFlowWorkflow(top);\n\t\t\tconst rendered = shouldUseColor(args) ? flowToAnsi(flowWorkflow) : flowToString(flowWorkflow);\n\t\t\tconsole.log(`${C.bold}Top cross-CLI workflow (visualized):${C.reset}`);\n\t\t\tconsole.log(rendered);\n\t\t\tconsole.log();\n\t\t}\n\t} catch (err: any) {\n\t\tconsole.error(`Error: ${err.message}`);\n\t\tprocess.exit(1);\n\t}\n}\n\nasync function runArchaeologyCmd(args: string[]) {\n\tlet binary: string | null = null;\n\tlet skipCache = false;\n\tlet maxDepth = 2;\n\tlet format: \"ansi\" | \"json\" = \"ansi\";\n\n\tfor (let i = 0; i < args.length; i++) {\n\t\tconst arg = args[i]!;\n\t\tif (arg === \"--no-cache\") {\n\t\t\tskipCache = true;\n\t\t} else if (arg === \"--max-depth\" && args[i + 1]) {\n\t\t\tmaxDepth = Number.parseInt(args[++i]!, 10);\n\t\t} else if (arg === \"--format\" && args[i + 1]) {\n\t\t\tformat = args[++i] as \"ansi\" | \"json\";\n\t\t} else if (arg !== \"--no-color\" && !arg.startsWith(\"-\")) {\n\t\t\tbinary = arg;\n\t\t}\n\t}\n\n\tif (!binary) {\n\t\tconsole.error(\"Error: provide a binary name\");\n\t\tconsole.error(\"Run 'clitree archaeology --help' for usage\");\n\t\tprocess.exit(1);\n\t}\n\n\tconst C = makeColors(shouldUseColor(args));\n\n\ttry {\n\t\tconsole.error(`${C.dim}⚠  LLM archaeology requires running inside the clitree skill.${C.reset}`);\n\t\tconsole.error(`${C.dim}   Running deterministic phases only (help + history mining).${C.reset}`);\n\t\tconsole.error(\"\");\n\n\t\tconst [arch, mine] = await Promise.all([\n\t\t\trunArchaeology(binary, new NullDelegate(), { skipCache, maxHelpDepth: maxDepth }),\n\t\t\tmineCli(binary, { minSupport: 3 }).catch(() => null),\n\t\t]);\n\n\t\tif (format === \"json\") {\n\t\t\tconsole.log(JSON.stringify({ archaeology: arch, mining: mine }, null, 2));\n\t\t\treturn;\n\t\t}\n\n\t\tconsole.log(`${C.bold}${C.magenta}${binary}${C.reset}`);\n\t\tif (arch.tree.description) {\n\t\t\tconsole.log(`${C.gray}${arch.tree.description}${C.reset}`);\n\t\t}\n\t\tconsole.log();\n\n\t\tconsole.log(`${C.bold}Tree:${C.reset}`);\n\t\tconsole.log(`  ${C.dim}Commands:${C.reset}  ${C.cyan}${arch.stats.helpCommands}${C.reset}`);\n\t\tconsole.log(`  ${C.dim}Cached:${C.reset}    ${arch.fromCache ? `${C.green}yes${C.reset}` : `${C.dim}no${C.reset}`}`);\n\t\tconsole.log();\n\n\t\tif (mine) {\n\t\t\tconsole.log(`${C.bold}Usage from shell history:${C.reset}`);\n\t\t\tconsole.log(`  ${C.dim}Invocations:${C.reset}  ${C.cyan}${mine.stats.totalInvocations}${C.reset}`);\n\t\t\tconsole.log(`  ${C.dim}Subcommands:${C.reset}  ${C.cyan}${mine.stats.uniqueSubcommands}${C.reset}`);\n\n\t\t\tif (mine.workflows.length > 0) {\n\t\t\t\tconsole.log(`\\n${C.bold}Workflows you repeat:${C.reset}`);\n\t\t\t\tfor (const wf of mine.workflows.slice(0, 5)) {\n\t\t\t\t\tconst chain = wf.path[0]!.map(p => `${C.green}${p}${C.reset}`).join(` ${C.gray}→${C.reset} `);\n\t\t\t\t\tconsole.log(`  ${chain} ${C.dim}(${wf.support}×)${C.reset}`);\n\t\t\t\t}\n\t\t\t}\n\n\t\t\tif (mine.suggestions.length > 0) {\n\t\t\t\tconsole.log(`\\n${C.bold}${C.yellow}💡 Skill suggestions:${C.reset}`);\n\t\t\t\tfor (const s of mine.suggestions.slice(0, 3)) {\n\t\t\t\t\tconsole.log(`  ${C.bold}/${s.name}${C.reset} — ${s.description}`);\n\t\t\t\t\tconsole.log(`    ${C.dim}${s.reason}${C.reset}`);\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\n\t\tconsole.log();\n\t\tconsole.log(`${C.dim}Install the clitree skill for full LLM archaeology:${C.reset}`);\n\t\tconsole.log(`${C.dim}  bash ./skill/install.sh${C.reset}`);\n\t\tconsole.log();\n\t} catch (err: any) {\n\t\tconsole.error(`${C.red}Error: ${err.message}${C.reset}`);\n\t\tprocess.exit(1);\n\t}\n}\n"
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+  "debugId": "36C7EC67BF0C8B9764756E2164756E21",
   "names": []
 }

package/dist/miner/activity.d.ts

@@ -0,0 +1,21 @@
+import type { HistoryEntry } from "./types";
+export interface ActivityProfile {
+    /** Total invocations considered */
+    total: number;
+    /** Count per hour of day (0-23) */
+    hourOfDay: number[];
+    /** Count per day of week (0=Sun, 6=Sat) */
+    dayOfWeek: number[];
+    /** Count per day over the last N days (most recent last) */
+    last30Days: number[];
+    /** The earliest timestamp observed (unix seconds) */
+    firstSeen: number;
+    /** The latest timestamp observed (unix seconds) */
+    lastSeen: number;
+}
+/**
+ * Compute temporal activity histograms from a list of history entries.
+ * Assumes entries have unix-second timestamps; entries with timestamp 0 are ignored.
+ */
+export declare function computeActivity(entries: HistoryEntry[], now?: Date): ActivityProfile;
+export declare function formatTimeRange(firstSeen: number, lastSeen: number): string;

package/dist/miner/cross-cli.d.ts

@@ -0,0 +1,55 @@
+export interface CrossCliStep {
+    cli: string;
+    subcommand: string;
+}
+export interface CrossCliWorkflow {
+    path: CrossCliStep[];
+    support: number;
+    signature: string;
+    uniqueCLIs: number;
+}
+export interface CrossCliOptions {
+    historyPath?: string;
+    sessionGapMinutes?: number;
+    minSupport?: number;
+    minPathLength?: number;
+    maxPathLength?: number;
+    topK?: number;
+    /** Only include workflows that cross at least this many distinct CLIs */
+    minDistinctCLIs?: number;
+    /** If non-empty, only consider entries whose cli[0] is in this set */
+    allowedCLIs?: string[];
+    /** Ignore CLIs that add noise (ls, cd, etc.) */
+    ignoreCLIs?: string[];
+}
+export interface CrossCliResult {
+    workflows: CrossCliWorkflow[];
+    sessionsAnalyzed: number;
+    distinctCLIs: string[];
+    totalTransitions: number;
+}
+/**
+ * Mine workflows that cross multiple CLIs. Unlike `mineCli`, this does NOT filter
+ * to a single binary up front. It looks at every command in a session and detects
+ * recurring sequences that weave between tools — e.g. `git push → gh pr create`,
+ * `docker build → docker push → kubectl apply`, `bun test → git commit → git push`.
+ */
+export declare function mineCrossCli(options?: CrossCliOptions): Promise<CrossCliResult>;
+/**
+ * Convert a CrossCliWorkflow into a Workflow suitable for the flow renderer.
+ * Each node is labeled with "<cli> <sub>" so the DAG makes the cross-CLI nature obvious.
+ */
+export declare function crossCliToFlowWorkflow(workflow: CrossCliWorkflow): {
+    name: string;
+    description: string;
+    cli: string;
+    nodes: {
+        id: string;
+        command: string[];
+        label: string;
+    }[];
+    edges: {
+        from: string;
+        to: string;
+    }[];
+};