@crafter/cli-tree 0.1.1 → 0.1.3

package/dist/{chunk-57gtsvhb.js → chunk-dnq2rnr7.js}

@@ -401,6 +401,29 @@ function generateReason(frequency, path, stats) {
   return `Detected ${frequency} times in your shell history`;
 }
 
+// src/miner/to-flow.ts
+function minedToFlowWorkflow(mined, occurrences) {
+  const path = mined.path[0] ?? [];
+  const label = path.join(" → ");
+  const freq = occurrences ?? mined.support;
+  const nodes = path.map((sub, idx) => ({
+    id: `n${idx}`,
+    command: [mined.cli, sub],
+    label: sub
+  }));
+  const edges = [];
+  for (let i = 0;i < nodes.length - 1; i++) {
+    edges.push({ from: nodes[i].id, to: nodes[i + 1].id });
+  }
+  return {
+    name: label,
+    description: `Seen ${freq}× in your shell history`,
+    cli: mined.cli,
+    nodes,
+    edges
+  };
+}
+
 // src/miner/index.ts
 async function mineCli(cli, options = {}) {
   const path = options.historyPath ?? defaultHistoryPath();
@@ -429,6 +452,6 @@ async function mineCli(cli, options = {}) {
   };
 }
 
-export { readHistoryFile, detectHistoryFormat, parseHistory, tokenize, defaultHistoryPath, segmentSessions, filterByCli, extractSubcommand, extractSubcommandPath, buildTransitions, normalizeTransitions, extractPaths, clusterIntoWorkflows, computeStats, suggestSkills, mineCli };
+export { readHistoryFile, detectHistoryFormat, parseHistory, tokenize, defaultHistoryPath, segmentSessions, filterByCli, extractSubcommand, extractSubcommandPath, buildTransitions, normalizeTransitions, extractPaths, clusterIntoWorkflows, computeStats, suggestSkills, minedToFlowWorkflow, mineCli };
 
-//# debugId=83F3B582B342B95E64756E2164756E21
+//# debugId=9D659A5F2CF096F164756E2164756E21

package/dist/{chunk-57gtsvhb.js.map → chunk-dnq2rnr7.js.map}

@@ -1,6 +1,6 @@
 {
   "version": 3,
-  "sources": ["../src/miner/history.ts", "../src/miner/sessions.ts", "../src/miner/transitions.ts", "../src/miner/workflows.ts", "../src/miner/stats.ts", "../src/miner/suggest.ts", "../src/miner/index.ts"],
+  "sources": ["../src/miner/history.ts", "../src/miner/sessions.ts", "../src/miner/transitions.ts", "../src/miner/workflows.ts", "../src/miner/stats.ts", "../src/miner/suggest.ts", "../src/miner/to-flow.ts", "../src/miner/index.ts"],
   "sourcesContent": [
     "import type { HistoryEntry } from \"./types\";\n\nexport async function readHistoryFile(path: string): Promise<string> {\n\treturn await Bun.file(path).text();\n}\n\nexport function detectHistoryFormat(text: string): \"zsh-extended\" | \"bash\" | \"fish\" | \"unknown\" {\n\tconst firstNonEmpty = text.split(\"\\n\").find(l => l.trim().length > 0);\n\tif (!firstNonEmpty) return \"unknown\";\n\tif (/^: \\d+:\\d+;/.test(firstNonEmpty)) return \"zsh-extended\";\n\tif (/^- cmd: /.test(firstNonEmpty)) return \"fish\";\n\treturn \"bash\";\n}\n\nexport function parseHistory(text: string): HistoryEntry[] {\n\tconst format = detectHistoryFormat(text);\n\tswitch (format) {\n\t\tcase \"zsh-extended\":\n\t\t\treturn parseZshExtended(text);\n\t\tcase \"fish\":\n\t\t\treturn parseFishHistory(text);\n\t\tcase \"bash\":\n\t\tdefault:\n\t\t\treturn parseBashHistory(text);\n\t}\n}\n\nfunction parseZshExtended(text: string): HistoryEntry[] {\n\tconst entries: HistoryEntry[] = [];\n\tconst lines = text.split(\"\\n\");\n\n\tlet pending: { timestamp: number; cmd: string } | null = null;\n\n\tfor (const rawLine of lines) {\n\t\tconst match = rawLine.match(/^: (\\d+):\\d+;(.*)$/);\n\t\tif (match) {\n\t\t\tif (pending) {\n\t\t\t\tentries.push(buildEntry(pending.timestamp, pending.cmd));\n\t\t\t}\n\t\t\tpending = { timestamp: Number.parseInt(match[1]!, 10), cmd: match[2]! };\n\t\t} else if (pending) {\n\t\t\tpending.cmd += \"\\n\" + rawLine;\n\t\t}\n\t}\n\n\tif (pending) {\n\t\tentries.push(buildEntry(pending.timestamp, pending.cmd));\n\t}\n\n\treturn entries.filter(e => e.argv.length > 0);\n}\n\nfunction parseBashHistory(text: string): HistoryEntry[] {\n\tconst entries: HistoryEntry[] = [];\n\tconst lines = text.split(\"\\n\");\n\tlet currentTimestamp = 0;\n\n\tfor (const line of lines) {\n\t\tconst trimmed = line.trim();\n\t\tif (!trimmed) continue;\n\n\t\tif (/^#\\d+$/.test(trimmed)) {\n\t\t\tcurrentTimestamp = Number.parseInt(trimmed.slice(1), 10);\n\t\t\tcontinue;\n\t\t}\n\n\t\tentries.push(buildEntry(currentTimestamp, trimmed));\n\t}\n\n\treturn entries.filter(e => e.argv.length > 0);\n}\n\nfunction parseFishHistory(text: string): HistoryEntry[] {\n\tconst entries: HistoryEntry[] = [];\n\tconst blocks = text.split(/\\n(?=- cmd: )/);\n\n\tfor (const block of blocks) {\n\t\tconst cmdMatch = block.match(/- cmd: (.*)/);\n\t\tconst whenMatch = block.match(/when: (\\d+)/);\n\t\tif (!cmdMatch) continue;\n\t\tconst timestamp = whenMatch ? Number.parseInt(whenMatch[1]!, 10) : 0;\n\t\tentries.push(buildEntry(timestamp, cmdMatch[1]!));\n\t}\n\n\treturn entries.filter(e => e.argv.length > 0);\n}\n\nfunction buildEntry(timestamp: number, rawCmd: string): HistoryEntry {\n\tconst cleaned = stripContinuations(rawCmd).trim();\n\tconst argv = tokenize(cleaned);\n\treturn { timestamp, raw: cleaned, argv };\n}\n\nfunction stripContinuations(cmd: string): string {\n\treturn cmd.replace(/\\\\\\n/g, \" \").replace(/\\n\\s*/g, \" \");\n}\n\nexport function tokenize(cmd: string): string[] {\n\tconst tokens: string[] = [];\n\tlet current = \"\";\n\tlet inSingle = false;\n\tlet inDouble = false;\n\tlet escape = false;\n\n\tfor (let i = 0; i < cmd.length; i++) {\n\t\tconst ch = cmd[i]!;\n\t\tif (escape) {\n\t\t\tcurrent += ch;\n\t\t\tescape = false;\n\t\t\tcontinue;\n\t\t}\n\t\tif (ch === \"\\\\\" && !inSingle) {\n\t\t\tescape = true;\n\t\t\tcontinue;\n\t\t}\n\t\tif (ch === \"'\" && !inDouble) {\n\t\t\tinSingle = !inSingle;\n\t\t\tcontinue;\n\t\t}\n\t\tif (ch === '\"' && !inSingle) {\n\t\t\tinDouble = !inDouble;\n\t\t\tcontinue;\n\t\t}\n\t\tif (/\\s/.test(ch) && !inSingle && !inDouble) {\n\t\t\tif (current) {\n\t\t\t\ttokens.push(current);\n\t\t\t\tcurrent = \"\";\n\t\t\t}\n\t\t\tcontinue;\n\t\t}\n\t\tif ((ch === \"|\" || ch === \";\" || ch === \"&\") && !inSingle && !inDouble) {\n\t\t\tif (current) {\n\t\t\t\ttokens.push(current);\n\t\t\t\tcurrent = \"\";\n\t\t\t}\n\t\t\treturn tokens;\n\t\t}\n\t\tcurrent += ch;\n\t}\n\n\tif (current) tokens.push(current);\n\treturn tokens;\n}\n\nexport function defaultHistoryPath(): string | null {\n\tconst home = process.env.HOME ?? \"\";\n\tif (!home) return null;\n\n\tconst candidates = [\n\t\t`${home}/.zsh_history`,\n\t\t`${home}/.bash_history`,\n\t\t`${home}/.config/fish/fish_history`,\n\t];\n\n\treturn candidates[0] ?? null;\n}\n",
     "import type { HistoryEntry, Session } from \"./types\";\n\nexport function segmentSessions(entries: HistoryEntry[], gapMinutes = 10): Session[] {\n\tif (entries.length === 0) return [];\n\n\tconst sorted = [...entries].sort((a, b) => a.timestamp - b.timestamp);\n\tconst gapSeconds = gapMinutes * 60;\n\tconst sessions: Session[] = [];\n\n\tlet current: HistoryEntry[] = [sorted[0]!];\n\tlet sessionStart = sorted[0]!.timestamp;\n\tlet lastTimestamp = sorted[0]!.timestamp;\n\n\tfor (let i = 1; i < sorted.length; i++) {\n\t\tconst entry = sorted[i]!;\n\t\tconst gap = entry.timestamp - lastTimestamp;\n\n\t\tif (gap > gapSeconds) {\n\t\t\tsessions.push({ start: sessionStart, end: lastTimestamp, entries: current });\n\t\t\tcurrent = [entry];\n\t\t\tsessionStart = entry.timestamp;\n\t\t} else {\n\t\t\tcurrent.push(entry);\n\t\t}\n\t\tlastTimestamp = entry.timestamp;\n\t}\n\n\tsessions.push({ start: sessionStart, end: lastTimestamp, entries: current });\n\treturn sessions;\n}\n\nexport function filterByCli(sessions: Session[], cli: string): Session[] {\n\treturn sessions\n\t\t.map(session => ({\n\t\t\t...session,\n\t\t\tentries: session.entries.filter(e => e.argv[0] === cli),\n\t\t}))\n\t\t.filter(s => s.entries.length > 0);\n}\n",
@@ -8,9 +8,10 @@
     "import type { Session, MinedWorkflow } from \"./types\";\nimport { extractSubcommand } from \"./transitions\";\n\nexport interface PathCluster {\n\tsignature: string;\n\tpath: string[];\n\toccurrences: number;\n}\n\nexport function extractPaths(\n\tsessions: Session[],\n\tminLength = 2,\n\tmaxLength = 7,\n): PathCluster[] {\n\tconst pathCounts = new Map<string, { path: string[]; count: number }>();\n\n\tfor (const session of sessions) {\n\t\tconst subcommands = session.entries.map(extractSubcommand);\n\t\tconst dedupedConsecutive = dedupeConsecutive(subcommands);\n\n\t\tfor (let start = 0; start < dedupedConsecutive.length; start++) {\n\t\t\tconst maxEnd = Math.min(start + maxLength, dedupedConsecutive.length);\n\t\t\tfor (let end = start + minLength; end <= maxEnd; end++) {\n\t\t\t\tconst slice = dedupedConsecutive.slice(start, end);\n\t\t\t\tconst sig = slice.join(\" → \");\n\t\t\t\tconst existing = pathCounts.get(sig);\n\t\t\t\tif (existing) {\n\t\t\t\t\texisting.count += 1;\n\t\t\t\t} else {\n\t\t\t\t\tpathCounts.set(sig, { path: slice, count: 1 });\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\t}\n\n\treturn Array.from(pathCounts.entries())\n\t\t.map(([signature, { path, count }]) => ({\n\t\t\tsignature,\n\t\t\tpath,\n\t\t\toccurrences: count,\n\t\t}))\n\t\t.sort((a, b) => {\n\t\t\tif (b.occurrences !== a.occurrences) return b.occurrences - a.occurrences;\n\t\t\treturn b.path.length - a.path.length;\n\t\t});\n}\n\nexport function clusterIntoWorkflows(\n\tclusters: PathCluster[],\n\tcli: string,\n\toptions: { minSupport?: number; topK?: number } = {},\n): MinedWorkflow[] {\n\tconst minSupport = options.minSupport ?? 2;\n\tconst topK = options.topK ?? 10;\n\n\tconst filtered = clusters.filter(c => c.occurrences >= minSupport);\n\tconst deduped = removeSubPaths(filtered);\n\n\tconst totalOccurrences = clusters.reduce((sum, c) => sum + c.occurrences, 0) || 1;\n\n\treturn deduped.slice(0, topK).map(cluster => ({\n\t\tname: cluster.path.join(\"-\"),\n\t\tcli,\n\t\tpath: [cluster.path],\n\t\tsupport: cluster.occurrences,\n\t\tconfidence: cluster.occurrences / totalOccurrences,\n\t\tsource: \"history\" as const,\n\t}));\n}\n\nfunction dedupeConsecutive(items: string[]): string[] {\n\tconst result: string[] = [];\n\tfor (const item of items) {\n\t\tif (result.length === 0 || result[result.length - 1] !== item) {\n\t\t\tresult.push(item);\n\t\t}\n\t}\n\treturn result;\n}\n\nfunction removeSubPaths(clusters: PathCluster[]): PathCluster[] {\n\tconst sortedByLength = [...clusters].sort((a, b) => b.path.length - a.path.length);\n\tconst kept: PathCluster[] = [];\n\n\tfor (const cluster of sortedByLength) {\n\t\tconst sig = cluster.signature;\n\t\tconst alreadyCoveredBy = kept.find(k =>\n\t\t\tk.signature.includes(sig) && k.occurrences >= cluster.occurrences * 0.8,\n\t\t);\n\t\tif (!alreadyCoveredBy) {\n\t\t\tkept.push(cluster);\n\t\t}\n\t}\n\n\treturn kept.sort((a, b) => b.occurrences - a.occurrences);\n}\n",
     "import type { HistoryEntry, CliUsageStats, Session } from \"./types\";\nimport { extractSubcommand } from \"./transitions\";\n\nexport function computeStats(entries: HistoryEntry[], sessions: Session[], cli: string): CliUsageStats {\n\tconst cliEntries = entries.filter(e => e.argv[0] === cli);\n\tconst cliSessions = sessions.filter(s => s.entries.some(e => e.argv[0] === cli));\n\n\tconst subcommandCounts = new Map<string, number>();\n\tconst flagCounts = new Map<string, number>();\n\n\tfor (const entry of cliEntries) {\n\t\tconst sub = extractSubcommand(entry);\n\t\tsubcommandCounts.set(sub, (subcommandCounts.get(sub) ?? 0) + 1);\n\n\t\tfor (const arg of entry.argv.slice(1)) {\n\t\t\tif (arg.startsWith(\"--\")) {\n\t\t\t\tconst flag = arg.split(\"=\")[0]!;\n\t\t\t\tflagCounts.set(flag, (flagCounts.get(flag) ?? 0) + 1);\n\t\t\t} else if (arg.startsWith(\"-\") && arg.length === 2) {\n\t\t\t\tflagCounts.set(arg, (flagCounts.get(arg) ?? 0) + 1);\n\t\t\t}\n\t\t}\n\t}\n\n\tconst topSubcommands = Array.from(subcommandCounts.entries())\n\t\t.map(([subcommand, count]) => ({ subcommand, count }))\n\t\t.sort((a, b) => b.count - a.count)\n\t\t.slice(0, 10);\n\n\tconst topFlags = Array.from(flagCounts.entries())\n\t\t.map(([flag, count]) => ({ flag, count }))\n\t\t.sort((a, b) => b.count - a.count)\n\t\t.slice(0, 10);\n\n\treturn {\n\t\tcli,\n\t\ttotalInvocations: cliEntries.length,\n\t\tuniqueSubcommands: subcommandCounts.size,\n\t\ttopSubcommands,\n\t\ttopFlags,\n\t\tsessionCount: cliSessions.length,\n\t};\n}\n",
     "import type { MinedWorkflow, CliUsageStats } from \"./types\";\n\nexport interface SkillSuggestion {\n\tname: string;\n\tdescription: string;\n\tcli: string;\n\tcommands: string[];\n\tfrequency: number;\n\treason: string;\n\tpriority: \"high\" | \"medium\" | \"low\";\n}\n\nexport function suggestSkills(\n\tworkflows: MinedWorkflow[],\n\tstats: CliUsageStats,\n): SkillSuggestion[] {\n\tconst suggestions: SkillSuggestion[] = [];\n\n\tfor (const wf of workflows) {\n\t\tconst path = wf.path[0] ?? [];\n\t\tif (path.length < 2) continue;\n\n\t\tconst suggestion = workflowToSuggestion(wf, stats);\n\t\tif (suggestion) suggestions.push(suggestion);\n\t}\n\n\treturn suggestions.sort((a, b) => {\n\t\tconst priorityOrder = { high: 0, medium: 1, low: 2 };\n\t\tif (priorityOrder[a.priority] !== priorityOrder[b.priority]) {\n\t\t\treturn priorityOrder[a.priority] - priorityOrder[b.priority];\n\t\t}\n\t\treturn b.frequency - a.frequency;\n\t});\n}\n\nfunction workflowToSuggestion(wf: MinedWorkflow, stats: CliUsageStats): SkillSuggestion | null {\n\tconst path = wf.path[0] ?? [];\n\tif (path.length < 2) return null;\n\n\tconst commands = path.map(sub => `${wf.cli} ${sub}`);\n\tconst frequency = wf.support;\n\n\tconst priority = scorePriority(frequency, path.length, stats.totalInvocations);\n\n\tconst name = generateSkillName(wf.cli, path);\n\tconst description = generateDescription(wf.cli, path);\n\tconst reason = generateReason(frequency, path, stats);\n\n\treturn { name, description, cli: wf.cli, commands, frequency, reason, priority };\n}\n\nfunction scorePriority(frequency: number, pathLength: number, totalInvocations: number): \"high\" | \"medium\" | \"low\" {\n\tconst ratio = frequency / totalInvocations;\n\tconst score = frequency * pathLength * (ratio + 0.1);\n\n\tif (score > 50) return \"high\";\n\tif (score > 15) return \"medium\";\n\treturn \"low\";\n}\n\nfunction generateSkillName(cli: string, path: string[]): string {\n\tconst knownPatterns: Record<string, string> = {\n\t\t\"add,commit\": \"ship\",\n\t\t\"add,commit,push\": \"ship\",\n\t\t\"commit,push\": \"push-latest\",\n\t\t\"install,dev\": \"start\",\n\t\t\"install,run\": \"start\",\n\t\t\"login,publish\": \"release\",\n\t\t\"publish,tag\": \"release\",\n\t\t\"checkout,pull\": \"sync\",\n\t\t\"fetch,pull\": \"sync\",\n\t\t\"build,push\": \"deploy\",\n\t\t\"build,run\": \"test-build\",\n\t\t\"compose,compose\": \"compose-iterate\",\n\t};\n\n\tconst key = path.join(\",\");\n\tif (knownPatterns[key]) return knownPatterns[key]!;\n\n\treturn path.join(\"-\");\n}\n\nfunction generateDescription(cli: string, path: string[]): string {\n\treturn `Run ${cli} ${path.join(\", then \")} as one command`;\n}\n\nfunction generateReason(frequency: number, path: string[], stats: CliUsageStats): string {\n\tconst ratio = frequency / stats.totalInvocations;\n\tconst pct = (ratio * 100).toFixed(0);\n\n\tif (ratio > 0.1) {\n\t\treturn `You run this exact sequence ${frequency} times (${pct}% of all your ${stats.cli} usage)`;\n\t}\n\tif (frequency >= 50) {\n\t\treturn `You run this exact sequence ${frequency} times — that's a lot of repetition`;\n\t}\n\tif (frequency >= 20) {\n\t\treturn `You run this exact sequence ${frequency} times`;\n\t}\n\treturn `Detected ${frequency} times in your shell history`;\n}\n",
-    "import { parseHistory, readHistoryFile, defaultHistoryPath, tokenize, detectHistoryFormat } from \"./history\";\nimport { segmentSessions, filterByCli } from \"./sessions\";\nimport { buildTransitions, normalizeTransitions, extractSubcommand, extractSubcommandPath } from \"./transitions\";\nimport { extractPaths, clusterIntoWorkflows } from \"./workflows\";\nimport { computeStats } from \"./stats\";\nimport { suggestSkills, type SkillSuggestion } from \"./suggest\";\nimport type { HistoryEntry, Session, Transition, MinedWorkflow, CliUsageStats, MineOptions } from \"./types\";\n\nexport type { HistoryEntry, Session, Transition, MinedWorkflow, CliUsageStats, MineOptions, SkillSuggestion };\nexport {\n\tparseHistory,\n\treadHistoryFile,\n\tdefaultHistoryPath,\n\ttokenize,\n\tdetectHistoryFormat,\n\tsegmentSessions,\n\tfilterByCli,\n\tbuildTransitions,\n\tnormalizeTransitions,\n\textractSubcommand,\n\textractSubcommandPath,\n\textractPaths,\n\tclusterIntoWorkflows,\n\tcomputeStats,\n\tsuggestSkills,\n};\n\nexport interface MineResult {\n\tcli: string;\n\tstats: CliUsageStats;\n\ttransitions: Transition[];\n\tworkflows: MinedWorkflow[];\n\tsuggestions: SkillSuggestion[];\n\tsessionsAnalyzed: number;\n}\n\nexport async function mineCli(cli: string, options: MineOptions = {}): Promise<MineResult> {\n\tconst path = options.historyPath ?? defaultHistoryPath();\n\tif (!path) {\n\t\tthrow new Error(\"Could not determine shell history path. Pass historyPath explicitly.\");\n\t}\n\n\tconst text = await readHistoryFile(path);\n\tconst entries = parseHistory(text);\n\tconst allSessions = segmentSessions(entries, options.sessionGapMinutes ?? 10);\n\tconst cliSessions = filterByCli(allSessions, cli);\n\n\tconst stats = computeStats(entries, allSessions, cli);\n\n\tconst rawTransitions = buildTransitions(cliSessions);\n\tconst transitions = normalizeTransitions(\n\t\trawTransitions,\n\t\toptions.minSupport ?? 3,\n\t\toptions.minConfidence ?? 0.2,\n\t);\n\n\tconst paths = extractPaths(\n\t\tcliSessions,\n\t\toptions.minPathLength ?? 2,\n\t\toptions.maxPathLength ?? 6,\n\t);\n\tconst workflows = clusterIntoWorkflows(paths, cli, {\n\t\tminSupport: options.minSupport ?? 3,\n\t});\n\n\tconst suggestions = suggestSkills(workflows, stats);\n\n\treturn {\n\t\tcli,\n\t\tstats,\n\t\ttransitions,\n\t\tworkflows,\n\t\tsuggestions,\n\t\tsessionsAnalyzed: cliSessions.length,\n\t};\n}\n"
+    "import type { Workflow } from \"../flow/types\";\nimport type { MinedWorkflow } from \"./types\";\n\n/**\n * Convert a MinedWorkflow (discovered from shell history) into a Workflow\n * that the flow renderer can visualize as an ASCII DAG.\n *\n * The mined workflow is a linear path like [\"add\", \"commit\", \"push\"] with\n * a frequency count. We turn it into a linear Workflow with one node per\n * step and edges in order — matching the shape of the handcrafted YAML\n * workflows in workflows/.\n */\nexport function minedToFlowWorkflow(mined: MinedWorkflow, occurrences?: number): Workflow {\n\tconst path = mined.path[0] ?? [];\n\tconst label = path.join(\" → \");\n\tconst freq = occurrences ?? mined.support;\n\n\tconst nodes = path.map((sub, idx) => ({\n\t\tid: `n${idx}`,\n\t\tcommand: [mined.cli, sub],\n\t\tlabel: sub,\n\t}));\n\n\tconst edges = [];\n\tfor (let i = 0; i < nodes.length - 1; i++) {\n\t\tedges.push({ from: nodes[i]!.id, to: nodes[i + 1]!.id });\n\t}\n\n\treturn {\n\t\tname: label,\n\t\tdescription: `Seen ${freq}× in your shell history`,\n\t\tcli: mined.cli,\n\t\tnodes,\n\t\tedges,\n\t};\n}\n",
+    "import { parseHistory, readHistoryFile, defaultHistoryPath, tokenize, detectHistoryFormat } from \"./history\";\nimport { segmentSessions, filterByCli } from \"./sessions\";\nimport { buildTransitions, normalizeTransitions, extractSubcommand, extractSubcommandPath } from \"./transitions\";\nimport { extractPaths, clusterIntoWorkflows } from \"./workflows\";\nimport { computeStats } from \"./stats\";\nimport { suggestSkills, type SkillSuggestion } from \"./suggest\";\nimport { minedToFlowWorkflow } from \"./to-flow\";\nimport type { HistoryEntry, Session, Transition, MinedWorkflow, CliUsageStats, MineOptions } from \"./types\";\n\nexport type { HistoryEntry, Session, Transition, MinedWorkflow, CliUsageStats, MineOptions, SkillSuggestion };\nexport {\n\tparseHistory,\n\treadHistoryFile,\n\tdefaultHistoryPath,\n\ttokenize,\n\tdetectHistoryFormat,\n\tsegmentSessions,\n\tfilterByCli,\n\tbuildTransitions,\n\tnormalizeTransitions,\n\textractSubcommand,\n\textractSubcommandPath,\n\textractPaths,\n\tclusterIntoWorkflows,\n\tcomputeStats,\n\tsuggestSkills,\n\tminedToFlowWorkflow,\n};\n\nexport interface MineResult {\n\tcli: string;\n\tstats: CliUsageStats;\n\ttransitions: Transition[];\n\tworkflows: MinedWorkflow[];\n\tsuggestions: SkillSuggestion[];\n\tsessionsAnalyzed: number;\n}\n\nexport async function mineCli(cli: string, options: MineOptions = {}): Promise<MineResult> {\n\tconst path = options.historyPath ?? defaultHistoryPath();\n\tif (!path) {\n\t\tthrow new Error(\"Could not determine shell history path. Pass historyPath explicitly.\");\n\t}\n\n\tconst text = await readHistoryFile(path);\n\tconst entries = parseHistory(text);\n\tconst allSessions = segmentSessions(entries, options.sessionGapMinutes ?? 10);\n\tconst cliSessions = filterByCli(allSessions, cli);\n\n\tconst stats = computeStats(entries, allSessions, cli);\n\n\tconst rawTransitions = buildTransitions(cliSessions);\n\tconst transitions = normalizeTransitions(\n\t\trawTransitions,\n\t\toptions.minSupport ?? 3,\n\t\toptions.minConfidence ?? 0.2,\n\t);\n\n\tconst paths = extractPaths(\n\t\tcliSessions,\n\t\toptions.minPathLength ?? 2,\n\t\toptions.maxPathLength ?? 6,\n\t);\n\tconst workflows = clusterIntoWorkflows(paths, cli, {\n\t\tminSupport: options.minSupport ?? 3,\n\t});\n\n\tconst suggestions = suggestSkills(workflows, stats);\n\n\treturn {\n\t\tcli,\n\t\tstats,\n\t\ttransitions,\n\t\tworkflows,\n\t\tsuggestions,\n\t\tsessionsAnalyzed: cliSessions.length,\n\t};\n}\n"
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+  "debugId": "9D659A5F2CF096F164756E2164756E21",
   "names": []
 }

package/dist/cli.js

@@ -5,8 +5,9 @@ import {
   treeToString
 } from "./chunk-v5w3w6bd.js";
 import {
-  mineCli
-} from "./chunk-57gtsvhb.js";
+  mineCli,
+  minedToFlowWorkflow
+} from "./chunk-dnq2rnr7.js";
 import {
   NullDelegate,
   runArchaeology
@@ -27,7 +28,7 @@ import"./chunk-q4se2rwe.js";
 // src/cli.ts
 var args = process.argv.slice(2);
 var subcommand = args[0];
-var HELP_SUBCOMMANDS = new Set(["flow", "mine", "archaeology"]);
+var HELP_SUBCOMMANDS = new Set(["flow", "mine", "archaeology", "safe-help"]);
 var isHelpFlag = args.includes("--help") || args.includes("-h");
 if (!subcommand || isHelpFlag && !HELP_SUBCOMMANDS.has(subcommand ?? "")) {
   printMainHelp();
@@ -40,6 +41,8 @@ if (isHelpFlag) {
     printMineHelp();
   else if (subcommand === "archaeology")
     printArchaeologyHelp();
+  else if (subcommand === "safe-help")
+    printSafeHelpHelp();
   else
     printMainHelp();
   process.exit(0);
@@ -50,6 +53,8 @@ if (subcommand === "flow") {
   await runMine(args.slice(1));
 } else if (subcommand === "archaeology") {
   await runArchaeologyCmd(args.slice(1));
+} else if (subcommand === "safe-help") {
+  await runSafeHelp(args.slice(1));
 } else {
   await runTree(args);
 }
@@ -62,21 +67,58 @@ function printMainHelp() {
     clitree flow <file> [options]           Render a workflow YAML as a DAG
     clitree mine <binary> [options]         Mine shell history for workflows
     clitree archaeology <binary> [options]  Full analysis: tree + mining + (LLM)
+    clitree safe-help <binary> [sub...]     Fetch clean help for any CLI (no pager, no overstriking)
 
   Examples:
     clitree docker                          # basic tree
     clitree mine git                        # "what workflows do I repeat with git?"
     clitree archaeology bun                 # tree + mining + LLM archaeology
+    clitree safe-help git commit            # avoid the git man-page pager trap
 
   Subcommands:
     tree          Parse --help output (default; passing a binary name invokes this)
     flow          Render a workflow YAML file as an ASCII DAG
     mine          Discover workflows from your shell history
     archaeology   Run full analysis (tree + mine + LLM proposals when available)
+    safe-help     Return inline help for any CLI, handling pager/overstrike edge cases
 
   Help for a subcommand: clitree <subcommand> --help
 `);
 }
+function printSafeHelpHelp() {
+  console.log(`
+  clitree safe-help — Fetch clean help output for any CLI
+
+  Usage:
+    clitree safe-help <binary> [subcommand...] [options]
+
+  Why this exists:
+    Running '<cli> --help' directly is a minefield on agents and scripts:
+      - 'git commit --help' opens a pager in a TTY and hangs
+      - Piping 'git <sub> --help' returns nroff with overstrike (ffiixxuupp)
+      - Some CLIs use 'help <sub>' instead of '<sub> --help'
+      - macOS man pages emit \\b sequences that need col -bx
+
+    safe-help tries the right variants in order, cleans overstrikes, and
+    returns plain text every time.
+
+  Strategy (in order):
+    1. <cli> <sub> -h                        — short inline help
+    2. <cli> <sub> --help                    — long help (captured, overstrike-stripped)
+    3. <cli> help <sub>                      — alternate syntax
+    4. MANPAGER=cat man <cli>-<sub> | col -bx — final man fallback
+
+  Examples:
+    clitree safe-help git commit
+    clitree safe-help docker run
+    clitree safe-help kubectl get pods
+    clitree safe-help bun install
+
+  Options:
+    --no-color           Disable ANSI codes (auto-detects non-TTY)
+    -h, --help           Show this help
+`);
+}
 function printMineHelp() {
   console.log(`
   clitree mine — Mine your shell history for CLI workflows
@@ -86,7 +128,7 @@ function printMineHelp() {
 
   Examples:
     clitree mine git
-    clitree mine docker --min-support 5
+    clitree mine docker --min-support 5 --with-flow
     clitree mine bun --format json > bun-flows.json
     clitree mine git --no-color | tee report.txt
 
@@ -95,8 +137,13 @@ function printMineHelp() {
     --history-path <p>   Custom shell history path (default: ~/.zsh_history)
     --format <fmt>       Output format: ansi (default), json
     --max-paths <n>      Max workflows to show (default: 10)
+    --with-flow          Always render the top workflow as an ASCII DAG
+    --no-flow            Never render the DAG (overrides auto-detect)
     --no-color           Disable ANSI colors (also auto-disabled when stdout is not a TTY)
     -h, --help           Show this help
+
+  By default, the top workflow is rendered as a DAG only when it has 3+ steps.
+  Use --with-flow to force it on even for 2-step chains, or --no-flow to skip.
 `);
 }
 function printArchaeologyHelp() {
@@ -267,6 +314,117 @@ async function readStdin() {
   }
   return Buffer.concat(chunks).toString("utf-8");
 }
+function stripOverstrike(text) {
+  return text.replace(/(.)\b\1/g, "$1").replace(/_\b(.)/g, "$1").replace(/\b/g, "").replace(/\x1b\[[0-9;]*[a-zA-Z]/g, "");
+}
+function looksLikeHelp(text) {
+  if (!text.trim())
+    return false;
+  if (text.length < 40)
+    return false;
+  const firstChunk = text.slice(0, 200).toLowerCase();
+  if (/(unknown|invalid|no such|not a \w+ command|flag needs an argument|unrecognized)/.test(firstChunk)) {
+    return false;
+  }
+  if (/run '.+' for more information/.test(firstChunk))
+    return false;
+  return true;
+}
+async function tryHelpVariant(binary, argv, timeoutMs = 5000) {
+  try {
+    const proc = Bun.spawn([binary, ...argv], {
+      stdout: "pipe",
+      stderr: "pipe",
+      env: { ...process.env, PAGER: "cat", MANPAGER: "cat", GIT_PAGER: "cat" }
+    });
+    const timer = setTimeout(() => proc.kill(), timeoutMs);
+    const [stdout, stderr] = await Promise.all([
+      new Response(proc.stdout).text(),
+      new Response(proc.stderr).text()
+    ]);
+    clearTimeout(timer);
+    await proc.exited;
+    const combined = stdout || stderr;
+    if (!looksLikeHelp(combined))
+      return null;
+    return stripOverstrike(combined);
+  } catch {
+    return null;
+  }
+}
+async function tryManPage(binary, subPath, timeoutMs = 5000) {
+  const candidates = [
+    subPath.length > 0 ? [`${binary}-${subPath.join("-")}`] : [binary],
+    [binary, ...subPath]
+  ];
+  for (const args2 of candidates) {
+    try {
+      const proc = Bun.spawn(["man", ...args2], {
+        stdout: "pipe",
+        stderr: "pipe",
+        env: { ...process.env, MANPAGER: "cat", PAGER: "cat" }
+      });
+      const timer = setTimeout(() => proc.kill(), timeoutMs);
+      const [stdout] = await Promise.all([
+        new Response(proc.stdout).text(),
+        new Response(proc.stderr).text()
+      ]);
+      clearTimeout(timer);
+      await proc.exited;
+      if (looksLikeHelp(stdout))
+        return stripOverstrike(stdout);
+    } catch {}
+  }
+  return null;
+}
+async function runSafeHelp(args2) {
+  let binary = null;
+  const subPath = [];
+  for (const arg of args2) {
+    if (arg === "--no-color" || arg === "--help" || arg === "-h")
+      continue;
+    if (!binary) {
+      binary = arg;
+    } else {
+      subPath.push(arg);
+    }
+  }
+  if (!binary) {
+    console.error("Error: provide a binary name");
+    console.error("Run 'clitree safe-help --help' for usage");
+    process.exit(1);
+  }
+  const variants = [
+    { label: "short help (-h)", args: [...subPath, "-h"] },
+    { label: "long help (--help)", args: [...subPath, "--help"] }
+  ];
+  if (subPath.length > 0) {
+    variants.push({ label: "help subcommand", args: ["help", ...subPath] });
+  }
+  for (const variant of variants) {
+    const output = await tryHelpVariant(binary, variant.args);
+    if (output) {
+      process.stdout.write(output);
+      if (!output.endsWith(`
+`))
+        process.stdout.write(`
+`);
+      return;
+    }
+  }
+  const manOutput = await tryManPage(binary, subPath);
+  if (manOutput) {
+    process.stdout.write(manOutput);
+    if (!manOutput.endsWith(`
+`))
+      process.stdout.write(`
+`);
+    return;
+  }
+  console.error(`Error: could not fetch help for ${binary} ${subPath.join(" ")}`);
+  console.error("Tried: -h, --help, help subcommand, and man page.");
+  process.exit(1);
+}
 function shouldUseColor(args2) {
   if (args2.includes("--no-color"))
     return false;
@@ -298,6 +456,7 @@ async function runMine(args2) {
   let historyPath;
   let format = "ansi";
   let maxPaths = 10;
+  let withFlow = "auto";
   for (let i = 0;i < args2.length; i++) {
     const arg = args2[i];
     if (arg === "--min-support" && args2[i + 1]) {
@@ -308,6 +467,10 @@ async function runMine(args2) {
       format = args2[++i];
     } else if (arg === "--max-paths" && args2[i + 1]) {
       maxPaths = Number.parseInt(args2[++i], 10);
+    } else if (arg === "--with-flow" || arg === "--flow") {
+      withFlow = "on";
+    } else if (arg === "--no-flow") {
+      withFlow = "off";
     } else if (arg !== "--no-color" && !arg.startsWith("-")) {
       binary = arg;
     }
@@ -360,11 +523,30 @@ ${C.bold}${C.magenta}${binary}${C.reset} ${C.gray}— shell history analysis${C.
       }
       console.log();
     }
+    if (withFlow !== "off") {
+      const minSteps = withFlow === "on" ? 2 : 3;
+      const topForFlow = pickWorkflowForFlow(result.workflows, minSteps);
+      if (topForFlow) {
+        const flowWorkflow = minedToFlowWorkflow(topForFlow);
+        const rendered = shouldUseColor(args2) ? flowToAnsi(flowWorkflow) : flowToString(flowWorkflow);
+        console.log(`${C.bold}Top workflow (visualized):${C.reset}`);
+        console.log(rendered);
+        console.log();
+      }
+    }
   } catch (err) {
     console.error(`Error: ${err.message}`);
     process.exit(1);
   }
 }
+function pickWorkflowForFlow(workflows, minSteps = 3) {
+  for (const wf of workflows) {
+    const len = wf.path[0]?.length ?? 0;
+    if (len >= minSteps)
+      return wf;
+  }
+  return null;
+}
 async function runArchaeologyCmd(args2) {
   let binary = null;
   let skipCache = false;
@@ -440,4 +622,4 @@ ${C.bold}${C.yellow}\uD83D\uDCA1 Skill suggestions:${C.reset}`);
   }
 }
 
-//# debugId=F977FC1E65697C7D64756E2164756E21
+//# debugId=6575AA9BC14C249964756E2164756E21

package/dist/cli.js.map

@@ -2,9 +2,9 @@
   "version": 3,
   "sources": ["../src/cli.ts"],
   "sourcesContent": [
-    "#!/usr/bin/env bun\nimport { parseHelpRecursive, parseHelp } from \"./parse\";\nimport { printTree, treeToString, treeToHtml } from \"./index\";\nimport type { TreeOptions } from \"./types\";\nimport { parseWorkflow, validateWorkflow, flowToAnsi, flowToString, flowToHtml } from \"./flow\";\nimport type { FlowRenderOptions } from \"./flow/types\";\nimport { mineCli } from \"./miner\";\nimport { runArchaeology, NullDelegate } from \"./archaeology\";\n\nconst args = process.argv.slice(2);\nconst subcommand = args[0];\n\nconst HELP_SUBCOMMANDS = new Set([\"flow\", \"mine\", \"archaeology\"]);\nconst isHelpFlag = args.includes(\"--help\") || args.includes(\"-h\");\n\nif (!subcommand || (isHelpFlag && !HELP_SUBCOMMANDS.has(subcommand ?? \"\"))) {\n\tprintMainHelp();\n\tprocess.exit(0);\n}\n\nif (isHelpFlag) {\n\tif (subcommand === \"flow\") printFlowHelp();\n\telse if (subcommand === \"mine\") printMineHelp();\n\telse if (subcommand === \"archaeology\") printArchaeologyHelp();\n\telse printMainHelp();\n\tprocess.exit(0);\n}\n\nif (subcommand === \"flow\") {\n\tawait runFlow(args.slice(1));\n} else if (subcommand === \"mine\") {\n\tawait runMine(args.slice(1));\n} else if (subcommand === \"archaeology\") {\n\tawait runArchaeologyCmd(args.slice(1));\n} else {\n\tawait runTree(args);\n}\n\nfunction printMainHelp() {\n\tconsole.log(`\n  clitree — Visualize and explore any CLI\n\n  Usage:\n    clitree <binary> [options]              Render command tree from --help\n    clitree flow <file> [options]           Render a workflow YAML as a DAG\n    clitree mine <binary> [options]         Mine shell history for workflows\n    clitree archaeology <binary> [options]  Full analysis: tree + mining + (LLM)\n\n  Examples:\n    clitree docker                          # basic tree\n    clitree mine git                        # \"what workflows do I repeat with git?\"\n    clitree archaeology bun                 # tree + mining + LLM archaeology\n\n  Subcommands:\n    tree          Parse --help output (default; passing a binary name invokes this)\n    flow          Render a workflow YAML file as an ASCII DAG\n    mine          Discover workflows from your shell history\n    archaeology   Run full analysis (tree + mine + LLM proposals when available)\n\n  Help for a subcommand: clitree <subcommand> --help\n`);\n}\n\nfunction printMineHelp() {\n\tconsole.log(`\n  clitree mine — Mine your shell history for CLI workflows\n\n  Usage:\n    clitree mine <binary> [options]\n\n  Examples:\n    clitree mine git\n    clitree mine docker --min-support 5\n    clitree mine bun --format json > bun-flows.json\n    clitree mine git --no-color | tee report.txt\n\n  Options:\n    --min-support <n>    Minimum occurrences to count as a workflow (default: 3)\n    --history-path <p>   Custom shell history path (default: ~/.zsh_history)\n    --format <fmt>       Output format: ansi (default), json\n    --max-paths <n>      Max workflows to show (default: 10)\n    --no-color           Disable ANSI colors (also auto-disabled when stdout is not a TTY)\n    -h, --help           Show this help\n`);\n}\n\nfunction printArchaeologyHelp() {\n\tconsole.log(`\n  clitree archaeology — Full CLI analysis: tree + mining + LLM archaeology\n\n  Usage:\n    clitree archaeology <binary> [options]\n\n  When run from the command line without a delegate, only the deterministic\n  phases run (help parsing + shell history mining). LLM archaeology requires\n  running inside the clitree skill (see ./skill/SKILL.md).\n\n  Examples:\n    clitree archaeology git                  # help + history\n    clitree archaeology docker --no-cache    # bypass cache\n    clitree archaeology bun --format json    # JSON output\n\n  Options:\n    --no-cache           Skip cache, always re-run\n    --max-depth <n>      Max --help recursion depth (default: 2)\n    --format <fmt>       Output format: ansi (default), json\n    --no-color           Disable ANSI colors (also auto-disabled when stdout is not a TTY)\n    -h, --help           Show this help\n`);\n}\n\nfunction printFlowHelp() {\n\tconsole.log(`\n  cli-tree flow — Render a CLI workflow YAML as a DAG\n\n  Usage:\n    cli-tree flow <file> [options]\n\n  Examples:\n    cli-tree flow workflows/git-pr-flow.yml\n    cli-tree flow my-workflow.yml --format html > flow.html\n    cli-tree flow workflows/docker-deploy.yml --compact --no-color\n\n  Options:\n    --compact          Hide description and legend\n    --no-color         Disable colors\n    --format <fmt>     Output format: ansi (default), string, html\n    --no-validate      Skip validation\n    -h, --help         Show this help\n`);\n}\n\nasync function runTree(args: string[]) {\n\tconst opts: TreeOptions = {\n\t\tcolor: true,\n\t\tshowFlags: true,\n\t\tshowArgs: true,\n\t\tshowDescriptions: true,\n\t\tshowTypes: true,\n\t\tshowDefaults: true,\n\t\tcompact: false,\n\t};\n\n\tlet depth = 2;\n\tlet format: \"ansi\" | \"string\" | \"html\" | \"json\" = \"ansi\";\n\tlet stdinName: string | null = null;\n\tlet binary: string | null = null;\n\n\topts.color = shouldUseColor(args);\n\n\tfor (let i = 0; i < args.length; i++) {\n\t\tconst arg = args[i]!;\n\t\tif (arg === \"--depth\" && args[i + 1]) {\n\t\t\tdepth = Number.parseInt(args[++i]!, 10);\n\t\t} else if (arg === \"--compact\") {\n\t\t\topts.compact = true;\n\t\t\topts.showDescriptions = false;\n\t\t} else if (arg === \"--no-flags\") {\n\t\t\topts.showFlags = false;\n\t\t} else if (arg === \"--no-args\") {\n\t\t\topts.showArgs = false;\n\t\t} else if (arg === \"--no-color\") {\n\t\t\topts.color = false;\n\t\t} else if (arg === \"--format\" && args[i + 1]) {\n\t\t\tformat = args[++i] as \"ansi\" | \"string\" | \"html\" | \"json\";\n\t\t} else if (arg === \"--stdin\" && args[i + 1]) {\n\t\t\tstdinName = args[++i]!;\n\t\t} else if (!arg.startsWith(\"-\")) {\n\t\t\tbinary = arg;\n\t\t}\n\t}\n\n\ttry {\n\t\tlet tree;\n\t\tif (stdinName) {\n\t\t\tconst input = await readStdin();\n\t\t\ttree = parseHelp(stdinName, input);\n\t\t} else if (binary) {\n\t\t\ttree = await parseHelpRecursive(binary, [], depth);\n\t\t} else {\n\t\t\tconsole.error(\"Error: provide a binary name or use --stdin <name>\");\n\t\t\tprocess.exit(1);\n\t\t}\n\n\t\tif (format === \"json\") {\n\t\t\tconsole.log(JSON.stringify(tree, null, 2));\n\t\t} else if (format === \"html\") {\n\t\t\tconsole.log(treeToHtml(tree, opts));\n\t\t} else if (format === \"string\") {\n\t\t\tconsole.log(treeToString(tree, opts));\n\t\t} else {\n\t\t\tprintTree(tree, opts);\n\t\t}\n\t} catch (err: any) {\n\t\tconsole.error(`Error: ${err.message}`);\n\t\tprocess.exit(1);\n\t}\n}\n\nasync function runFlow(args: string[]) {\n\tconst opts: FlowRenderOptions = {\n\t\tcolor: true,\n\t\tshowDescriptions: true,\n\t\tshowCommands: true,\n\t\tcompact: false,\n\t};\n\n\tlet format: \"ansi\" | \"string\" | \"html\" = \"ansi\";\n\tlet file: string | null = null;\n\tlet skipValidate = false;\n\n\tfor (let i = 0; i < args.length; i++) {\n\t\tconst arg = args[i]!;\n\t\tif (arg === \"--compact\") {\n\t\t\topts.compact = true;\n\t\t\topts.showDescriptions = false;\n\t\t} else if (arg === \"--no-color\") {\n\t\t\topts.color = false;\n\t\t} else if (arg === \"--no-validate\") {\n\t\t\tskipValidate = true;\n\t\t} else if (arg === \"--format\" && args[i + 1]) {\n\t\t\tformat = args[++i] as \"ansi\" | \"string\" | \"html\";\n\t\t} else if (!arg.startsWith(\"-\")) {\n\t\t\tfile = arg;\n\t\t}\n\t}\n\n\tif (!file) {\n\t\tconsole.error(\"Error: provide a workflow YAML file\");\n\t\tconsole.error(\"Run 'cli-tree flow --help' for usage\");\n\t\tprocess.exit(1);\n\t}\n\n\ttry {\n\t\tconst text = await Bun.file(file).text();\n\t\tconst workflow = parseWorkflow(text);\n\n\t\tif (!skipValidate) {\n\t\t\tconst result = validateWorkflow(workflow);\n\t\t\tfor (const err of result.errors) {\n\t\t\t\tconst prefix = err.severity === \"error\" ? \"\\x1b[31m✗\" : \"\\x1b[33m⚠\";\n\t\t\t\tconst reset = \"\\x1b[0m\";\n\t\t\t\tconst location = err.node ? ` [${err.node}]` : err.edge ? ` [${err.edge.from}→${err.edge.to}]` : \"\";\n\t\t\t\tconsole.error(`${prefix}${location} ${err.message}${reset}`);\n\t\t\t}\n\t\t\tif (!result.valid) process.exit(1);\n\t\t}\n\n\t\tif (format === \"html\") {\n\t\t\tconsole.log(flowToHtml(workflow, opts));\n\t\t} else if (format === \"string\") {\n\t\t\tconsole.log(flowToString(workflow, opts));\n\t\t} else {\n\t\t\tconsole.log(flowToAnsi(workflow, opts));\n\t\t}\n\t} catch (err: any) {\n\t\tconsole.error(`Error: ${err.message}`);\n\t\tprocess.exit(1);\n\t}\n}\n\nasync function readStdin(): Promise<string> {\n\tconst chunks: Buffer[] = [];\n\tfor await (const chunk of process.stdin) {\n\t\tchunks.push(chunk as Buffer);\n\t}\n\treturn Buffer.concat(chunks).toString(\"utf-8\");\n}\n\nfunction shouldUseColor(args: string[]): boolean {\n\tif (args.includes(\"--no-color\")) return false;\n\tif (process.env.NO_COLOR) return false;\n\tif (process.env.FORCE_COLOR) return true;\n\treturn !!process.stdout.isTTY;\n}\n\nfunction makeColors(enabled: boolean) {\n\tif (!enabled) {\n\t\treturn { reset: \"\", bold: \"\", dim: \"\", cyan: \"\", green: \"\", yellow: \"\", red: \"\", magenta: \"\", gray: \"\" };\n\t}\n\treturn {\n\t\treset: \"\\x1b[0m\",\n\t\tbold: \"\\x1b[1m\",\n\t\tdim: \"\\x1b[2m\",\n\t\tcyan: \"\\x1b[36m\",\n\t\tgreen: \"\\x1b[32m\",\n\t\tyellow: \"\\x1b[33m\",\n\t\tred: \"\\x1b[31m\",\n\t\tmagenta: \"\\x1b[35m\",\n\t\tgray: \"\\x1b[90m\",\n\t};\n}\n\nasync function runMine(args: string[]) {\n\tlet binary: string | null = null;\n\tlet minSupport = 3;\n\tlet historyPath: string | undefined;\n\tlet format: \"ansi\" | \"json\" = \"ansi\";\n\tlet maxPaths = 10;\n\n\tfor (let i = 0; i < args.length; i++) {\n\t\tconst arg = args[i]!;\n\t\tif (arg === \"--min-support\" && args[i + 1]) {\n\t\t\tminSupport = Number.parseInt(args[++i]!, 10);\n\t\t} else if (arg === \"--history-path\" && args[i + 1]) {\n\t\t\thistoryPath = args[++i]!;\n\t\t} else if (arg === \"--format\" && args[i + 1]) {\n\t\t\tformat = args[++i] as \"ansi\" | \"json\";\n\t\t} else if (arg === \"--max-paths\" && args[i + 1]) {\n\t\t\tmaxPaths = Number.parseInt(args[++i]!, 10);\n\t\t} else if (arg !== \"--no-color\" && !arg.startsWith(\"-\")) {\n\t\t\tbinary = arg;\n\t\t}\n\t}\n\n\tif (!binary) {\n\t\tconsole.error(\"Error: provide a binary name\");\n\t\tconsole.error(\"Run 'clitree mine --help' for usage\");\n\t\tprocess.exit(1);\n\t}\n\n\ttry {\n\t\tconst result = await mineCli(binary, { minSupport, historyPath });\n\n\t\tif (format === \"json\") {\n\t\t\tconsole.log(JSON.stringify(result, null, 2));\n\t\t\treturn;\n\t\t}\n\n\t\tconst C = makeColors(shouldUseColor(args));\n\n\t\tconsole.log(`\\n${C.bold}${C.magenta}${binary}${C.reset} ${C.gray}— shell history analysis${C.reset}\\n`);\n\t\tconsole.log(`${C.bold}Usage:${C.reset}`);\n\t\tconsole.log(`  ${C.dim}Invocations:${C.reset}  ${C.cyan}${result.stats.totalInvocations}${C.reset}`);\n\t\tconsole.log(`  ${C.dim}Subcommands:${C.reset}  ${C.cyan}${result.stats.uniqueSubcommands}${C.reset}`);\n\t\tconsole.log(`  ${C.dim}Sessions:${C.reset}     ${C.cyan}${result.sessionsAnalyzed}${C.reset}\\n`);\n\n\t\tif (result.stats.topSubcommands.length > 0) {\n\t\t\tconsole.log(`${C.bold}Top subcommands:${C.reset}`);\n\t\t\tconst max = result.stats.topSubcommands[0]!.count;\n\t\t\tfor (const { subcommand, count } of result.stats.topSubcommands.slice(0, 5)) {\n\t\t\t\tconst bar = \"█\".repeat(Math.max(1, Math.round((count / max) * 30)));\n\t\t\t\tconsole.log(`  ${C.green}${subcommand.padEnd(20)}${C.reset} ${C.cyan}${bar}${C.reset} ${C.dim}${count}${C.reset}`);\n\t\t\t}\n\t\t\tconsole.log();\n\t\t}\n\n\t\tif (result.workflows.length > 0) {\n\t\t\tconsole.log(`${C.bold}Discovered workflows:${C.reset}`);\n\t\t\tfor (const wf of result.workflows.slice(0, maxPaths)) {\n\t\t\t\tconst chain = wf.path[0]!.map(p => `${C.green}${p}${C.reset}`).join(` ${C.gray}→${C.reset} `);\n\t\t\t\tconsole.log(`  ${chain} ${C.dim}(${wf.support}×)${C.reset}`);\n\t\t\t}\n\t\t\tconsole.log();\n\t\t}\n\n\t\tif (result.suggestions.length > 0) {\n\t\t\tconsole.log(`${C.bold}${C.yellow}💡 Skill suggestions:${C.reset}`);\n\t\t\tfor (const s of result.suggestions.slice(0, 3)) {\n\t\t\t\tconst badge =\n\t\t\t\t\ts.priority === \"high\"\n\t\t\t\t\t\t? `${C.green}[HIGH]${C.reset}`\n\t\t\t\t\t\t: s.priority === \"medium\"\n\t\t\t\t\t\t\t? `${C.yellow}[MED]${C.reset}`\n\t\t\t\t\t\t\t: `${C.dim}[LOW]${C.reset}`;\n\t\t\t\tconsole.log(`\\n  ${badge} ${C.bold}/${s.name}${C.reset} — ${s.description}`);\n\t\t\t\tconsole.log(`    ${C.dim}${s.reason}${C.reset}`);\n\t\t\t\tconsole.log(`    ${C.dim}${s.commands.join(\" && \")}${C.reset}`);\n\t\t\t}\n\t\t\tconsole.log();\n\t\t}\n\t} catch (err: any) {\n\t\tconsole.error(`Error: ${err.message}`);\n\t\tprocess.exit(1);\n\t}\n}\n\nasync function runArchaeologyCmd(args: string[]) {\n\tlet binary: string | null = null;\n\tlet skipCache = false;\n\tlet maxDepth = 2;\n\tlet format: \"ansi\" | \"json\" = \"ansi\";\n\n\tfor (let i = 0; i < args.length; i++) {\n\t\tconst arg = args[i]!;\n\t\tif (arg === \"--no-cache\") {\n\t\t\tskipCache = true;\n\t\t} else if (arg === \"--max-depth\" && args[i + 1]) {\n\t\t\tmaxDepth = Number.parseInt(args[++i]!, 10);\n\t\t} else if (arg === \"--format\" && args[i + 1]) {\n\t\t\tformat = args[++i] as \"ansi\" | \"json\";\n\t\t} else if (arg !== \"--no-color\" && !arg.startsWith(\"-\")) {\n\t\t\tbinary = arg;\n\t\t}\n\t}\n\n\tif (!binary) {\n\t\tconsole.error(\"Error: provide a binary name\");\n\t\tconsole.error(\"Run 'clitree archaeology --help' for usage\");\n\t\tprocess.exit(1);\n\t}\n\n\tconst C = makeColors(shouldUseColor(args));\n\n\ttry {\n\t\tconsole.error(`${C.dim}⚠  LLM archaeology requires running inside the clitree skill.${C.reset}`);\n\t\tconsole.error(`${C.dim}   Running deterministic phases only (help + history mining).${C.reset}`);\n\t\tconsole.error(\"\");\n\n\t\tconst [arch, mine] = await Promise.all([\n\t\t\trunArchaeology(binary, new NullDelegate(), { skipCache, maxHelpDepth: maxDepth }),\n\t\t\tmineCli(binary, { minSupport: 3 }).catch(() => null),\n\t\t]);\n\n\t\tif (format === \"json\") {\n\t\t\tconsole.log(JSON.stringify({ archaeology: arch, mining: mine }, null, 2));\n\t\t\treturn;\n\t\t}\n\n\t\tconsole.log(`${C.bold}${C.magenta}${binary}${C.reset}`);\n\t\tif (arch.tree.description) {\n\t\t\tconsole.log(`${C.gray}${arch.tree.description}${C.reset}`);\n\t\t}\n\t\tconsole.log();\n\n\t\tconsole.log(`${C.bold}Tree:${C.reset}`);\n\t\tconsole.log(`  ${C.dim}Commands:${C.reset}  ${C.cyan}${arch.stats.helpCommands}${C.reset}`);\n\t\tconsole.log(`  ${C.dim}Cached:${C.reset}    ${arch.fromCache ? `${C.green}yes${C.reset}` : `${C.dim}no${C.reset}`}`);\n\t\tconsole.log();\n\n\t\tif (mine) {\n\t\t\tconsole.log(`${C.bold}Usage from shell history:${C.reset}`);\n\t\t\tconsole.log(`  ${C.dim}Invocations:${C.reset}  ${C.cyan}${mine.stats.totalInvocations}${C.reset}`);\n\t\t\tconsole.log(`  ${C.dim}Subcommands:${C.reset}  ${C.cyan}${mine.stats.uniqueSubcommands}${C.reset}`);\n\n\t\t\tif (mine.workflows.length > 0) {\n\t\t\t\tconsole.log(`\\n${C.bold}Workflows you repeat:${C.reset}`);\n\t\t\t\tfor (const wf of mine.workflows.slice(0, 5)) {\n\t\t\t\t\tconst chain = wf.path[0]!.map(p => `${C.green}${p}${C.reset}`).join(` ${C.gray}→${C.reset} `);\n\t\t\t\t\tconsole.log(`  ${chain} ${C.dim}(${wf.support}×)${C.reset}`);\n\t\t\t\t}\n\t\t\t}\n\n\t\t\tif (mine.suggestions.length > 0) {\n\t\t\t\tconsole.log(`\\n${C.bold}${C.yellow}💡 Skill suggestions:${C.reset}`);\n\t\t\t\tfor (const s of mine.suggestions.slice(0, 3)) {\n\t\t\t\t\tconsole.log(`  ${C.bold}/${s.name}${C.reset} — ${s.description}`);\n\t\t\t\t\tconsole.log(`    ${C.dim}${s.reason}${C.reset}`);\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\n\t\tconsole.log();\n\t\tconsole.log(`${C.dim}Install the clitree skill for full LLM archaeology:${C.reset}`);\n\t\tconsole.log(`${C.dim}  bash ./skill/install.sh${C.reset}`);\n\t\tconsole.log();\n\t} catch (err: any) {\n\t\tconsole.error(`${C.red}Error: ${err.message}${C.reset}`);\n\t\tprocess.exit(1);\n\t}\n}\n"
+    "#!/usr/bin/env bun\nimport { parseHelpRecursive, parseHelp } from \"./parse\";\nimport { printTree, treeToString, treeToHtml } from \"./index\";\nimport type { TreeOptions } from \"./types\";\nimport { parseWorkflow, validateWorkflow, flowToAnsi, flowToString, flowToHtml } from \"./flow\";\nimport type { FlowRenderOptions } from \"./flow/types\";\nimport { mineCli, minedToFlowWorkflow } from \"./miner\";\nimport { runArchaeology, NullDelegate } from \"./archaeology\";\n\nconst args = process.argv.slice(2);\nconst subcommand = args[0];\n\nconst HELP_SUBCOMMANDS = new Set([\"flow\", \"mine\", \"archaeology\", \"safe-help\"]);\nconst isHelpFlag = args.includes(\"--help\") || args.includes(\"-h\");\n\nif (!subcommand || (isHelpFlag && !HELP_SUBCOMMANDS.has(subcommand ?? \"\"))) {\n\tprintMainHelp();\n\tprocess.exit(0);\n}\n\nif (isHelpFlag) {\n\tif (subcommand === \"flow\") printFlowHelp();\n\telse if (subcommand === \"mine\") printMineHelp();\n\telse if (subcommand === \"archaeology\") printArchaeologyHelp();\n\telse if (subcommand === \"safe-help\") printSafeHelpHelp();\n\telse printMainHelp();\n\tprocess.exit(0);\n}\n\nif (subcommand === \"flow\") {\n\tawait runFlow(args.slice(1));\n} else if (subcommand === \"mine\") {\n\tawait runMine(args.slice(1));\n} else if (subcommand === \"archaeology\") {\n\tawait runArchaeologyCmd(args.slice(1));\n} else if (subcommand === \"safe-help\") {\n\tawait runSafeHelp(args.slice(1));\n} else {\n\tawait runTree(args);\n}\n\nfunction printMainHelp() {\n\tconsole.log(`\n  clitree — Visualize and explore any CLI\n\n  Usage:\n    clitree <binary> [options]              Render command tree from --help\n    clitree flow <file> [options]           Render a workflow YAML as a DAG\n    clitree mine <binary> [options]         Mine shell history for workflows\n    clitree archaeology <binary> [options]  Full analysis: tree + mining + (LLM)\n    clitree safe-help <binary> [sub...]     Fetch clean help for any CLI (no pager, no overstriking)\n\n  Examples:\n    clitree docker                          # basic tree\n    clitree mine git                        # \"what workflows do I repeat with git?\"\n    clitree archaeology bun                 # tree + mining + LLM archaeology\n    clitree safe-help git commit            # avoid the git man-page pager trap\n\n  Subcommands:\n    tree          Parse --help output (default; passing a binary name invokes this)\n    flow          Render a workflow YAML file as an ASCII DAG\n    mine          Discover workflows from your shell history\n    archaeology   Run full analysis (tree + mine + LLM proposals when available)\n    safe-help     Return inline help for any CLI, handling pager/overstrike edge cases\n\n  Help for a subcommand: clitree <subcommand> --help\n`);\n}\n\nfunction printSafeHelpHelp() {\n\tconsole.log(`\n  clitree safe-help — Fetch clean help output for any CLI\n\n  Usage:\n    clitree safe-help <binary> [subcommand...] [options]\n\n  Why this exists:\n    Running '<cli> --help' directly is a minefield on agents and scripts:\n      - 'git commit --help' opens a pager in a TTY and hangs\n      - Piping 'git <sub> --help' returns nroff with overstrike (ffiixxuupp)\n      - Some CLIs use 'help <sub>' instead of '<sub> --help'\n      - macOS man pages emit \\\\b sequences that need col -bx\n\n    safe-help tries the right variants in order, cleans overstrikes, and\n    returns plain text every time.\n\n  Strategy (in order):\n    1. <cli> <sub> -h                        — short inline help\n    2. <cli> <sub> --help                    — long help (captured, overstrike-stripped)\n    3. <cli> help <sub>                      — alternate syntax\n    4. MANPAGER=cat man <cli>-<sub> | col -bx — final man fallback\n\n  Examples:\n    clitree safe-help git commit\n    clitree safe-help docker run\n    clitree safe-help kubectl get pods\n    clitree safe-help bun install\n\n  Options:\n    --no-color           Disable ANSI codes (auto-detects non-TTY)\n    -h, --help           Show this help\n`);\n}\n\nfunction printMineHelp() {\n\tconsole.log(`\n  clitree mine — Mine your shell history for CLI workflows\n\n  Usage:\n    clitree mine <binary> [options]\n\n  Examples:\n    clitree mine git\n    clitree mine docker --min-support 5 --with-flow\n    clitree mine bun --format json > bun-flows.json\n    clitree mine git --no-color | tee report.txt\n\n  Options:\n    --min-support <n>    Minimum occurrences to count as a workflow (default: 3)\n    --history-path <p>   Custom shell history path (default: ~/.zsh_history)\n    --format <fmt>       Output format: ansi (default), json\n    --max-paths <n>      Max workflows to show (default: 10)\n    --with-flow          Always render the top workflow as an ASCII DAG\n    --no-flow            Never render the DAG (overrides auto-detect)\n    --no-color           Disable ANSI colors (also auto-disabled when stdout is not a TTY)\n    -h, --help           Show this help\n\n  By default, the top workflow is rendered as a DAG only when it has 3+ steps.\n  Use --with-flow to force it on even for 2-step chains, or --no-flow to skip.\n`);\n}\n\nfunction printArchaeologyHelp() {\n\tconsole.log(`\n  clitree archaeology — Full CLI analysis: tree + mining + LLM archaeology\n\n  Usage:\n    clitree archaeology <binary> [options]\n\n  When run from the command line without a delegate, only the deterministic\n  phases run (help parsing + shell history mining). LLM archaeology requires\n  running inside the clitree skill (see ./skill/SKILL.md).\n\n  Examples:\n    clitree archaeology git                  # help + history\n    clitree archaeology docker --no-cache    # bypass cache\n    clitree archaeology bun --format json    # JSON output\n\n  Options:\n    --no-cache           Skip cache, always re-run\n    --max-depth <n>      Max --help recursion depth (default: 2)\n    --format <fmt>       Output format: ansi (default), json\n    --no-color           Disable ANSI colors (also auto-disabled when stdout is not a TTY)\n    -h, --help           Show this help\n`);\n}\n\nfunction printFlowHelp() {\n\tconsole.log(`\n  cli-tree flow — Render a CLI workflow YAML as a DAG\n\n  Usage:\n    cli-tree flow <file> [options]\n\n  Examples:\n    cli-tree flow workflows/git-pr-flow.yml\n    cli-tree flow my-workflow.yml --format html > flow.html\n    cli-tree flow workflows/docker-deploy.yml --compact --no-color\n\n  Options:\n    --compact          Hide description and legend\n    --no-color         Disable colors\n    --format <fmt>     Output format: ansi (default), string, html\n    --no-validate      Skip validation\n    -h, --help         Show this help\n`);\n}\n\nasync function runTree(args: string[]) {\n\tconst opts: TreeOptions = {\n\t\tcolor: true,\n\t\tshowFlags: true,\n\t\tshowArgs: true,\n\t\tshowDescriptions: true,\n\t\tshowTypes: true,\n\t\tshowDefaults: true,\n\t\tcompact: false,\n\t};\n\n\tlet depth = 2;\n\tlet format: \"ansi\" | \"string\" | \"html\" | \"json\" = \"ansi\";\n\tlet stdinName: string | null = null;\n\tlet binary: string | null = null;\n\n\topts.color = shouldUseColor(args);\n\n\tfor (let i = 0; i < args.length; i++) {\n\t\tconst arg = args[i]!;\n\t\tif (arg === \"--depth\" && args[i + 1]) {\n\t\t\tdepth = Number.parseInt(args[++i]!, 10);\n\t\t} else if (arg === \"--compact\") {\n\t\t\topts.compact = true;\n\t\t\topts.showDescriptions = false;\n\t\t} else if (arg === \"--no-flags\") {\n\t\t\topts.showFlags = false;\n\t\t} else if (arg === \"--no-args\") {\n\t\t\topts.showArgs = false;\n\t\t} else if (arg === \"--no-color\") {\n\t\t\topts.color = false;\n\t\t} else if (arg === \"--format\" && args[i + 1]) {\n\t\t\tformat = args[++i] as \"ansi\" | \"string\" | \"html\" | \"json\";\n\t\t} else if (arg === \"--stdin\" && args[i + 1]) {\n\t\t\tstdinName = args[++i]!;\n\t\t} else if (!arg.startsWith(\"-\")) {\n\t\t\tbinary = arg;\n\t\t}\n\t}\n\n\ttry {\n\t\tlet tree;\n\t\tif (stdinName) {\n\t\t\tconst input = await readStdin();\n\t\t\ttree = parseHelp(stdinName, input);\n\t\t} else if (binary) {\n\t\t\ttree = await parseHelpRecursive(binary, [], depth);\n\t\t} else {\n\t\t\tconsole.error(\"Error: provide a binary name or use --stdin <name>\");\n\t\t\tprocess.exit(1);\n\t\t}\n\n\t\tif (format === \"json\") {\n\t\t\tconsole.log(JSON.stringify(tree, null, 2));\n\t\t} else if (format === \"html\") {\n\t\t\tconsole.log(treeToHtml(tree, opts));\n\t\t} else if (format === \"string\") {\n\t\t\tconsole.log(treeToString(tree, opts));\n\t\t} else {\n\t\t\tprintTree(tree, opts);\n\t\t}\n\t} catch (err: any) {\n\t\tconsole.error(`Error: ${err.message}`);\n\t\tprocess.exit(1);\n\t}\n}\n\nasync function runFlow(args: string[]) {\n\tconst opts: FlowRenderOptions = {\n\t\tcolor: true,\n\t\tshowDescriptions: true,\n\t\tshowCommands: true,\n\t\tcompact: false,\n\t};\n\n\tlet format: \"ansi\" | \"string\" | \"html\" = \"ansi\";\n\tlet file: string | null = null;\n\tlet skipValidate = false;\n\n\tfor (let i = 0; i < args.length; i++) {\n\t\tconst arg = args[i]!;\n\t\tif (arg === \"--compact\") {\n\t\t\topts.compact = true;\n\t\t\topts.showDescriptions = false;\n\t\t} else if (arg === \"--no-color\") {\n\t\t\topts.color = false;\n\t\t} else if (arg === \"--no-validate\") {\n\t\t\tskipValidate = true;\n\t\t} else if (arg === \"--format\" && args[i + 1]) {\n\t\t\tformat = args[++i] as \"ansi\" | \"string\" | \"html\";\n\t\t} else if (!arg.startsWith(\"-\")) {\n\t\t\tfile = arg;\n\t\t}\n\t}\n\n\tif (!file) {\n\t\tconsole.error(\"Error: provide a workflow YAML file\");\n\t\tconsole.error(\"Run 'cli-tree flow --help' for usage\");\n\t\tprocess.exit(1);\n\t}\n\n\ttry {\n\t\tconst text = await Bun.file(file).text();\n\t\tconst workflow = parseWorkflow(text);\n\n\t\tif (!skipValidate) {\n\t\t\tconst result = validateWorkflow(workflow);\n\t\t\tfor (const err of result.errors) {\n\t\t\t\tconst prefix = err.severity === \"error\" ? \"\\x1b[31m✗\" : \"\\x1b[33m⚠\";\n\t\t\t\tconst reset = \"\\x1b[0m\";\n\t\t\t\tconst location = err.node ? ` [${err.node}]` : err.edge ? ` [${err.edge.from}→${err.edge.to}]` : \"\";\n\t\t\t\tconsole.error(`${prefix}${location} ${err.message}${reset}`);\n\t\t\t}\n\t\t\tif (!result.valid) process.exit(1);\n\t\t}\n\n\t\tif (format === \"html\") {\n\t\t\tconsole.log(flowToHtml(workflow, opts));\n\t\t} else if (format === \"string\") {\n\t\t\tconsole.log(flowToString(workflow, opts));\n\t\t} else {\n\t\t\tconsole.log(flowToAnsi(workflow, opts));\n\t\t}\n\t} catch (err: any) {\n\t\tconsole.error(`Error: ${err.message}`);\n\t\tprocess.exit(1);\n\t}\n}\n\nasync function readStdin(): Promise<string> {\n\tconst chunks: Buffer[] = [];\n\tfor await (const chunk of process.stdin) {\n\t\tchunks.push(chunk as Buffer);\n\t}\n\treturn Buffer.concat(chunks).toString(\"utf-8\");\n}\n\nfunction stripOverstrike(text: string): string {\n\t// Strip nroff bold via char\\bchar, underline via _\\bchar, and stray control chars.\n\t// This is what `col -bx` does.\n\treturn text\n\t\t.replace(/(.)\\b\\1/g, \"$1\")\n\t\t.replace(/_\\b(.)/g, \"$1\")\n\t\t.replace(/\\b/g, \"\")\n\t\t.replace(/\\x1b\\[[0-9;]*[a-zA-Z]/g, \"\");\n}\n\nfunction looksLikeHelp(text: string): boolean {\n\tif (!text.trim()) return false;\n\tif (text.length < 40) return false;\n\tconst firstChunk = text.slice(0, 200).toLowerCase();\n\t// Error messages from unknown subcommands or unsupported flags\n\tif (/(unknown|invalid|no such|not a \\w+ command|flag needs an argument|unrecognized)/.test(firstChunk)) {\n\t\treturn false;\n\t}\n\t// \"Run '... --help' for more information\" is a hint, not the help itself\n\tif (/run '.+' for more information/.test(firstChunk)) return false;\n\treturn true;\n}\n\nasync function tryHelpVariant(binary: string, argv: string[], timeoutMs = 5000): Promise<string | null> {\n\ttry {\n\t\tconst proc = Bun.spawn([binary, ...argv], {\n\t\t\tstdout: \"pipe\",\n\t\t\tstderr: \"pipe\",\n\t\t\tenv: { ...process.env, PAGER: \"cat\", MANPAGER: \"cat\", GIT_PAGER: \"cat\" },\n\t\t});\n\n\t\tconst timer = setTimeout(() => proc.kill(), timeoutMs);\n\n\t\tconst [stdout, stderr] = await Promise.all([\n\t\t\tnew Response(proc.stdout).text(),\n\t\t\tnew Response(proc.stderr).text(),\n\t\t]);\n\t\tclearTimeout(timer);\n\t\tawait proc.exited;\n\n\t\tconst combined = stdout || stderr;\n\t\tif (!looksLikeHelp(combined)) return null;\n\t\treturn stripOverstrike(combined);\n\t} catch {\n\t\treturn null;\n\t}\n}\n\nasync function tryManPage(binary: string, subPath: string[], timeoutMs = 5000): Promise<string | null> {\n\t// Try 'man binary-sub' (git-commit), then 'man binary sub' as a fallback.\n\tconst candidates = [\n\t\tsubPath.length > 0 ? [`${binary}-${subPath.join(\"-\")}`] : [binary],\n\t\t[binary, ...subPath],\n\t];\n\n\tfor (const args of candidates) {\n\t\ttry {\n\t\t\tconst proc = Bun.spawn([\"man\", ...args], {\n\t\t\t\tstdout: \"pipe\",\n\t\t\t\tstderr: \"pipe\",\n\t\t\t\tenv: { ...process.env, MANPAGER: \"cat\", PAGER: \"cat\" },\n\t\t\t});\n\n\t\t\tconst timer = setTimeout(() => proc.kill(), timeoutMs);\n\t\t\tconst [stdout] = await Promise.all([\n\t\t\t\tnew Response(proc.stdout).text(),\n\t\t\t\tnew Response(proc.stderr).text(),\n\t\t\t]);\n\t\t\tclearTimeout(timer);\n\t\t\tawait proc.exited;\n\n\t\t\tif (looksLikeHelp(stdout)) return stripOverstrike(stdout);\n\t\t} catch {}\n\t}\n\treturn null;\n}\n\nasync function runSafeHelp(args: string[]) {\n\tlet binary: string | null = null;\n\tconst subPath: string[] = [];\n\n\tfor (const arg of args) {\n\t\tif (arg === \"--no-color\" || arg === \"--help\" || arg === \"-h\") continue;\n\t\tif (!binary) {\n\t\t\tbinary = arg;\n\t\t} else {\n\t\t\tsubPath.push(arg);\n\t\t}\n\t}\n\n\tif (!binary) {\n\t\tconsole.error(\"Error: provide a binary name\");\n\t\tconsole.error(\"Run 'clitree safe-help --help' for usage\");\n\t\tprocess.exit(1);\n\t}\n\n\t// Strategy in order of preference:\n\t// 1. `<cli> <sub> -h`  — short inline help, no pager\n\t// 2. `<cli> <sub> --help` — long form, overstrike-stripped\n\t// 3. `<cli> help <sub>` — alternate syntax (git, go, bun)\n\t// 4. `man <cli>-<sub>` or `man <cli> <sub>` — final fallback\n\tconst variants: Array<{ label: string; args: string[] }> = [\n\t\t{ label: \"short help (-h)\", args: [...subPath, \"-h\"] },\n\t\t{ label: \"long help (--help)\", args: [...subPath, \"--help\"] },\n\t];\n\n\tif (subPath.length > 0) {\n\t\tvariants.push({ label: \"help subcommand\", args: [\"help\", ...subPath] });\n\t}\n\n\tfor (const variant of variants) {\n\t\tconst output = await tryHelpVariant(binary, variant.args);\n\t\tif (output) {\n\t\t\tprocess.stdout.write(output);\n\t\t\tif (!output.endsWith(\"\\n\")) process.stdout.write(\"\\n\");\n\t\t\treturn;\n\t\t}\n\t}\n\n\t// Last resort: man page\n\tconst manOutput = await tryManPage(binary, subPath);\n\tif (manOutput) {\n\t\tprocess.stdout.write(manOutput);\n\t\tif (!manOutput.endsWith(\"\\n\")) process.stdout.write(\"\\n\");\n\t\treturn;\n\t}\n\n\tconsole.error(`Error: could not fetch help for ${binary} ${subPath.join(\" \")}`);\n\tconsole.error(\"Tried: -h, --help, help subcommand, and man page.\");\n\tprocess.exit(1);\n}\n\nfunction shouldUseColor(args: string[]): boolean {\n\tif (args.includes(\"--no-color\")) return false;\n\tif (process.env.NO_COLOR) return false;\n\tif (process.env.FORCE_COLOR) return true;\n\treturn !!process.stdout.isTTY;\n}\n\nfunction makeColors(enabled: boolean) {\n\tif (!enabled) {\n\t\treturn { reset: \"\", bold: \"\", dim: \"\", cyan: \"\", green: \"\", yellow: \"\", red: \"\", magenta: \"\", gray: \"\" };\n\t}\n\treturn {\n\t\treset: \"\\x1b[0m\",\n\t\tbold: \"\\x1b[1m\",\n\t\tdim: \"\\x1b[2m\",\n\t\tcyan: \"\\x1b[36m\",\n\t\tgreen: \"\\x1b[32m\",\n\t\tyellow: \"\\x1b[33m\",\n\t\tred: \"\\x1b[31m\",\n\t\tmagenta: \"\\x1b[35m\",\n\t\tgray: \"\\x1b[90m\",\n\t};\n}\n\nasync function runMine(args: string[]) {\n\tlet binary: string | null = null;\n\tlet minSupport = 3;\n\tlet historyPath: string | undefined;\n\tlet format: \"ansi\" | \"json\" = \"ansi\";\n\tlet maxPaths = 10;\n\tlet withFlow: \"auto\" | \"on\" | \"off\" = \"auto\";\n\n\tfor (let i = 0; i < args.length; i++) {\n\t\tconst arg = args[i]!;\n\t\tif (arg === \"--min-support\" && args[i + 1]) {\n\t\t\tminSupport = Number.parseInt(args[++i]!, 10);\n\t\t} else if (arg === \"--history-path\" && args[i + 1]) {\n\t\t\thistoryPath = args[++i]!;\n\t\t} else if (arg === \"--format\" && args[i + 1]) {\n\t\t\tformat = args[++i] as \"ansi\" | \"json\";\n\t\t} else if (arg === \"--max-paths\" && args[i + 1]) {\n\t\t\tmaxPaths = Number.parseInt(args[++i]!, 10);\n\t\t} else if (arg === \"--with-flow\" || arg === \"--flow\") {\n\t\t\twithFlow = \"on\";\n\t\t} else if (arg === \"--no-flow\") {\n\t\t\twithFlow = \"off\";\n\t\t} else if (arg !== \"--no-color\" && !arg.startsWith(\"-\")) {\n\t\t\tbinary = arg;\n\t\t}\n\t}\n\n\tif (!binary) {\n\t\tconsole.error(\"Error: provide a binary name\");\n\t\tconsole.error(\"Run 'clitree mine --help' for usage\");\n\t\tprocess.exit(1);\n\t}\n\n\ttry {\n\t\tconst result = await mineCli(binary, { minSupport, historyPath });\n\n\t\tif (format === \"json\") {\n\t\t\tconsole.log(JSON.stringify(result, null, 2));\n\t\t\treturn;\n\t\t}\n\n\t\tconst C = makeColors(shouldUseColor(args));\n\n\t\tconsole.log(`\\n${C.bold}${C.magenta}${binary}${C.reset} ${C.gray}— shell history analysis${C.reset}\\n`);\n\t\tconsole.log(`${C.bold}Usage:${C.reset}`);\n\t\tconsole.log(`  ${C.dim}Invocations:${C.reset}  ${C.cyan}${result.stats.totalInvocations}${C.reset}`);\n\t\tconsole.log(`  ${C.dim}Subcommands:${C.reset}  ${C.cyan}${result.stats.uniqueSubcommands}${C.reset}`);\n\t\tconsole.log(`  ${C.dim}Sessions:${C.reset}     ${C.cyan}${result.sessionsAnalyzed}${C.reset}\\n`);\n\n\t\tif (result.stats.topSubcommands.length > 0) {\n\t\t\tconsole.log(`${C.bold}Top subcommands:${C.reset}`);\n\t\t\tconst max = result.stats.topSubcommands[0]!.count;\n\t\t\tfor (const { subcommand, count } of result.stats.topSubcommands.slice(0, 5)) {\n\t\t\t\tconst bar = \"█\".repeat(Math.max(1, Math.round((count / max) * 30)));\n\t\t\t\tconsole.log(`  ${C.green}${subcommand.padEnd(20)}${C.reset} ${C.cyan}${bar}${C.reset} ${C.dim}${count}${C.reset}`);\n\t\t\t}\n\t\t\tconsole.log();\n\t\t}\n\n\t\tif (result.workflows.length > 0) {\n\t\t\tconsole.log(`${C.bold}Discovered workflows:${C.reset}`);\n\t\t\tfor (const wf of result.workflows.slice(0, maxPaths)) {\n\t\t\t\tconst chain = wf.path[0]!.map(p => `${C.green}${p}${C.reset}`).join(` ${C.gray}→${C.reset} `);\n\t\t\t\tconsole.log(`  ${chain} ${C.dim}(${wf.support}×)${C.reset}`);\n\t\t\t}\n\t\t\tconsole.log();\n\t\t}\n\n\t\tif (result.suggestions.length > 0) {\n\t\t\tconsole.log(`${C.bold}${C.yellow}💡 Skill suggestions:${C.reset}`);\n\t\t\tfor (const s of result.suggestions.slice(0, 3)) {\n\t\t\t\tconst badge =\n\t\t\t\t\ts.priority === \"high\"\n\t\t\t\t\t\t? `${C.green}[HIGH]${C.reset}`\n\t\t\t\t\t\t: s.priority === \"medium\"\n\t\t\t\t\t\t\t? `${C.yellow}[MED]${C.reset}`\n\t\t\t\t\t\t\t: `${C.dim}[LOW]${C.reset}`;\n\t\t\t\tconsole.log(`\\n  ${badge} ${C.bold}/${s.name}${C.reset} — ${s.description}`);\n\t\t\t\tconsole.log(`    ${C.dim}${s.reason}${C.reset}`);\n\t\t\t\tconsole.log(`    ${C.dim}${s.commands.join(\" && \")}${C.reset}`);\n\t\t\t}\n\t\t\tconsole.log();\n\t\t}\n\n\t\t// Pick the top workflow worth visualizing as a DAG.\n\t\t// In \"auto\" mode, prefer the highest-support workflow with 3+ steps —\n\t\t// 2-step chains are more readable as text than as boxed diagrams.\n\t\t// In \"on\" mode, render whatever is the top regardless of length.\n\t\t// In \"off\" mode, skip.\n\t\tif (withFlow !== \"off\") {\n\t\t\tconst minSteps = withFlow === \"on\" ? 2 : 3;\n\t\t\tconst topForFlow = pickWorkflowForFlow(result.workflows, minSteps);\n\t\t\tif (topForFlow) {\n\t\t\t\tconst flowWorkflow = minedToFlowWorkflow(topForFlow);\n\t\t\t\tconst rendered = shouldUseColor(args) ? flowToAnsi(flowWorkflow) : flowToString(flowWorkflow);\n\t\t\t\tconsole.log(`${C.bold}Top workflow (visualized):${C.reset}`);\n\t\t\t\tconsole.log(rendered);\n\t\t\t\tconsole.log();\n\t\t\t}\n\t\t}\n\t} catch (err: any) {\n\t\tconsole.error(`Error: ${err.message}`);\n\t\tprocess.exit(1);\n\t}\n}\n\nfunction pickWorkflowForFlow<T extends { path: string[][]; support: number }>(\n\tworkflows: T[],\n\tminSteps = 3,\n): T | null {\n\tfor (const wf of workflows) {\n\t\tconst len = wf.path[0]?.length ?? 0;\n\t\tif (len >= minSteps) return wf;\n\t}\n\treturn null;\n}\n\nasync function runArchaeologyCmd(args: string[]) {\n\tlet binary: string | null = null;\n\tlet skipCache = false;\n\tlet maxDepth = 2;\n\tlet format: \"ansi\" | \"json\" = \"ansi\";\n\n\tfor (let i = 0; i < args.length; i++) {\n\t\tconst arg = args[i]!;\n\t\tif (arg === \"--no-cache\") {\n\t\t\tskipCache = true;\n\t\t} else if (arg === \"--max-depth\" && args[i + 1]) {\n\t\t\tmaxDepth = Number.parseInt(args[++i]!, 10);\n\t\t} else if (arg === \"--format\" && args[i + 1]) {\n\t\t\tformat = args[++i] as \"ansi\" | \"json\";\n\t\t} else if (arg !== \"--no-color\" && !arg.startsWith(\"-\")) {\n\t\t\tbinary = arg;\n\t\t}\n\t}\n\n\tif (!binary) {\n\t\tconsole.error(\"Error: provide a binary name\");\n\t\tconsole.error(\"Run 'clitree archaeology --help' for usage\");\n\t\tprocess.exit(1);\n\t}\n\n\tconst C = makeColors(shouldUseColor(args));\n\n\ttry {\n\t\tconsole.error(`${C.dim}⚠  LLM archaeology requires running inside the clitree skill.${C.reset}`);\n\t\tconsole.error(`${C.dim}   Running deterministic phases only (help + history mining).${C.reset}`);\n\t\tconsole.error(\"\");\n\n\t\tconst [arch, mine] = await Promise.all([\n\t\t\trunArchaeology(binary, new NullDelegate(), { skipCache, maxHelpDepth: maxDepth }),\n\t\t\tmineCli(binary, { minSupport: 3 }).catch(() => null),\n\t\t]);\n\n\t\tif (format === \"json\") {\n\t\t\tconsole.log(JSON.stringify({ archaeology: arch, mining: mine }, null, 2));\n\t\t\treturn;\n\t\t}\n\n\t\tconsole.log(`${C.bold}${C.magenta}${binary}${C.reset}`);\n\t\tif (arch.tree.description) {\n\t\t\tconsole.log(`${C.gray}${arch.tree.description}${C.reset}`);\n\t\t}\n\t\tconsole.log();\n\n\t\tconsole.log(`${C.bold}Tree:${C.reset}`);\n\t\tconsole.log(`  ${C.dim}Commands:${C.reset}  ${C.cyan}${arch.stats.helpCommands}${C.reset}`);\n\t\tconsole.log(`  ${C.dim}Cached:${C.reset}    ${arch.fromCache ? `${C.green}yes${C.reset}` : `${C.dim}no${C.reset}`}`);\n\t\tconsole.log();\n\n\t\tif (mine) {\n\t\t\tconsole.log(`${C.bold}Usage from shell history:${C.reset}`);\n\t\t\tconsole.log(`  ${C.dim}Invocations:${C.reset}  ${C.cyan}${mine.stats.totalInvocations}${C.reset}`);\n\t\t\tconsole.log(`  ${C.dim}Subcommands:${C.reset}  ${C.cyan}${mine.stats.uniqueSubcommands}${C.reset}`);\n\n\t\t\tif (mine.workflows.length > 0) {\n\t\t\t\tconsole.log(`\\n${C.bold}Workflows you repeat:${C.reset}`);\n\t\t\t\tfor (const wf of mine.workflows.slice(0, 5)) {\n\t\t\t\t\tconst chain = wf.path[0]!.map(p => `${C.green}${p}${C.reset}`).join(` ${C.gray}→${C.reset} `);\n\t\t\t\t\tconsole.log(`  ${chain} ${C.dim}(${wf.support}×)${C.reset}`);\n\t\t\t\t}\n\t\t\t}\n\n\t\t\tif (mine.suggestions.length > 0) {\n\t\t\t\tconsole.log(`\\n${C.bold}${C.yellow}💡 Skill suggestions:${C.reset}`);\n\t\t\t\tfor (const s of mine.suggestions.slice(0, 3)) {\n\t\t\t\t\tconsole.log(`  ${C.bold}/${s.name}${C.reset} — ${s.description}`);\n\t\t\t\t\tconsole.log(`    ${C.dim}${s.reason}${C.reset}`);\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\n\t\tconsole.log();\n\t\tconsole.log(`${C.dim}Install the clitree skill for full LLM archaeology:${C.reset}`);\n\t\tconsole.log(`${C.dim}  bash ./skill/install.sh${C.reset}`);\n\t\tconsole.log();\n\t} catch (err: any) {\n\t\tconsole.error(`${C.red}Error: ${err.message}${C.reset}`);\n\t\tprocess.exit(1);\n\t}\n}\n"
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+  "debugId": "6575AA9BC14C249964756E2164756E21",
   "names": []
 }

package/dist/miner/index.d.ts

@@ -4,9 +4,10 @@ import { buildTransitions, normalizeTransitions, extractSubcommand, extractSubco
 import { extractPaths, clusterIntoWorkflows } from "./workflows";
 import { computeStats } from "./stats";
 import { suggestSkills, type SkillSuggestion } from "./suggest";
+import { minedToFlowWorkflow } from "./to-flow";
 import type { HistoryEntry, Session, Transition, MinedWorkflow, CliUsageStats, MineOptions } from "./types";
 export type { HistoryEntry, Session, Transition, MinedWorkflow, CliUsageStats, MineOptions, SkillSuggestion };
-export { parseHistory, readHistoryFile, defaultHistoryPath, tokenize, detectHistoryFormat, segmentSessions, filterByCli, buildTransitions, normalizeTransitions, extractSubcommand, extractSubcommandPath, extractPaths, clusterIntoWorkflows, computeStats, suggestSkills, };
+export { parseHistory, readHistoryFile, defaultHistoryPath, tokenize, detectHistoryFormat, segmentSessions, filterByCli, buildTransitions, normalizeTransitions, extractSubcommand, extractSubcommandPath, extractPaths, clusterIntoWorkflows, computeStats, suggestSkills, minedToFlowWorkflow, };
 export interface MineResult {
     cli: string;
     stats: CliUsageStats;

package/dist/miner/index.js

@@ -9,13 +9,14 @@ import {
   extractSubcommandPath,
   filterByCli,
   mineCli,
+  minedToFlowWorkflow,
   normalizeTransitions,
   parseHistory,
   readHistoryFile,
   segmentSessions,
   suggestSkills,
   tokenize
-} from "../chunk-57gtsvhb.js";
+} from "../chunk-dnq2rnr7.js";
 export {
   tokenize,
   suggestSkills,
@@ -23,6 +24,7 @@ export {
   readHistoryFile,
   parseHistory,
   normalizeTransitions,
+  minedToFlowWorkflow,
   mineCli,
   filterByCli,
   extractSubcommandPath,
@@ -35,4 +37,4 @@ export {
   buildTransitions
 };
 
-//# debugId=79FF1A9AE05DD20F64756E2164756E21
+//# debugId=34A9477E11B0A64764756E2164756E21

package/dist/miner/index.js.map

@@ -4,6 +4,6 @@
   "sourcesContent": [
   ],
   "mappings": "",
-  "debugId": "79FF1A9AE05DD20F64756E2164756E21",
+  "debugId": "34A9477E11B0A64764756E2164756E21",
   "names": []
 }

package/dist/miner/to-flow.d.ts

@@ -0,0 +1,12 @@
+import type { Workflow } from "../flow/types";
+import type { MinedWorkflow } from "./types";
+/**
+ * Convert a MinedWorkflow (discovered from shell history) into a Workflow
+ * that the flow renderer can visualize as an ASCII DAG.
+ *
+ * The mined workflow is a linear path like ["add", "commit", "push"] with
+ * a frequency count. We turn it into a linear Workflow with one node per
+ * step and edges in order — matching the shape of the handcrafted YAML
+ * workflows in workflows/.
+ */
+export declare function minedToFlowWorkflow(mined: MinedWorkflow, occurrences?: number): Workflow;

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@crafter/cli-tree",
-  "version": "0.1.1",
+  "version": "0.1.3",
   "description": "Explore and map any CLI tool deeply. Parse --help trees, mine shell history for repeated workflows, surface hidden flags via LLM archaeology, and suggest new agent skills from your usage patterns.",
   "type": "module",
   "main": "./dist/index.js",

package/skill/SKILL.md

@@ -49,7 +49,7 @@ The helper alias used throughout this skill:
 
 ```bash
 # Short hand. The first invocation downloads the package; subsequent runs are cached.
-CLITREE="bunx @crafter/cli-tree"
+CLITREE="bunx @crafter/cli-tree@latest"
 ```
 
 ## Phase 1 — Parse the --help tree
@@ -67,16 +67,36 @@ If the parse fails completely (empty output, error), try:
 
 ## Phase 2 — Mine shell history
 
+Run the miner **twice** — once for structured data you can reason over, and once for the pretty ANSI output you'll paste directly into the report.
+
+**2a. Structured data (for your reasoning):**
+
 ```bash
 $CLITREE mine "$TARGET_BINARY" --format json
 ```
 
 Read the result. You get:
 - `stats.totalInvocations` — how much the user uses this CLI
-- `stats.topSubcommands` — their most-used commands
+- `stats.topSubcommands` — their most-used commands with counts
 - `workflows` — sequences that repeat (≥3 times)
 - `suggestions` — candidate skills to create
 
+**2b. Pretty output (for the visual report):**
+
+```bash
+$CLITREE mine "$TARGET_BINARY"
+```
+
+This prints a single rich block containing **three visualizations at once**:
+
+1. **ASCII bar charts** for the user's top subcommands (ranked with Unicode `██` bars)
+2. **A ranked workflow list** with frequency counts (`add → commit → push (64×)`)
+3. **An ASCII DAG** of the top non-trivial workflow — boxed nodes with arrows, rendered with the same engine as the bundled workflow YAMLs
+
+**Capture this entire block — you'll paste it verbatim inside a fenced code block in the `## Your usage` section of the final report.** Do not re-type any part of it. The bars, the workflow list, and the DAG are all value-dense visuals that don't translate well to prose.
+
+The DAG auto-renders when the top workflow has 3+ steps. Pass `--with-flow` to force it on for 2-step chains, or `--no-flow` to skip it entirely.
+
 Three scenarios from the invocation count:
 
 | Invocations | What it means | What to do |
@@ -104,24 +124,77 @@ For detailed prompt templates that help you think through each category systemat
 
 ## Phase 4 — Validate every proposal
 
-This is the step that separates archaeology from hallucination. For each flag you propose, verify it exists:
+This is the step that separates archaeology from hallucination. For each flag you propose, verify it exists.
+
+### The right way to query help
+
+**Short help vs long help matters.** Most CLIs have two help outputs:
+
+- `<cli> <sub> -h` → **short inline help** (fast, plain text, no pager)
+- `<cli> <sub> --help` → **long help / man page** (slow, may open a pager, often has overstrike formatting)
+
+For **git specifically**, `git <cmd> --help` is equivalent to `man git-<cmd>`, which:
+- Opens a pager in a TTY (hangs the agent)
+- Pipes raw `nroff` output with overstrike sequences (`\b`) in a non-TTY — you get `ffiixxuupp` instead of `fixup`
+
+**Always prefer `-h` first.** Fall back to `--help` only if `-h` doesn't exist for that CLI.
+
+### Recommended validation patterns
+
+**The easy way — use the `safe-help` subcommand.** It tries `-h`, `--help`, `help <sub>`, and man pages in order, strips overstrike formatting, kills pagers, and returns clean text every time:
 
 ```bash
-# Primary check: is it in --help?
-"$TARGET_BINARY" "$SUBCOMMAND" --help 2>&1 | grep -E "(--<flag>|-<short>\\b)"
+# Fetch clean help for any CLI subcommand
+$CLITREE safe-help git commit | grep -E -- "--fixup|--amend|--no-verify"
+$CLITREE safe-help docker run | grep -E -- "--gpus|--platform"
+$CLITREE safe-help kubectl get | grep -E -- "--selector|--output"
+```
 
-# Fallback: man page
-man "$TARGET_BINARY" 2>/dev/null | grep -E "(--<flag>|-<short>\\b)" | head -5
+**Always prefer `safe-help` over raw `--help`.** It handles:
+- `git <cmd> --help` opening a man pager and hanging
+- macOS nroff overstriking (`ffiixxuupp` → `fixup`)
+- CLIs where `-h` isn't supported (like docker subcommands)
+- CLIs where the help lives under `help <sub>` syntax (like git's own internal convention)
+
+**If you must call the binary directly** (e.g. the user's CLI isn't mainstream), follow this precedence:
+
+```bash
+# Pattern 1 (preferred): short help, inline, no pager
+"$TARGET_BINARY" "$SUBCOMMAND" -h 2>&1 | grep -E -- "--<flag>|-<short>\b"
+
+# Pattern 2 (git-safe): force man page through col to strip overstrikes
+MANPAGER=cat PAGER=cat man "git-$SUBCOMMAND" 2>/dev/null | col -bx | grep -E -- "--<flag>|-<short>\b"
+
+# Pattern 3 (fallback): man for non-git binaries
+MANPAGER=cat PAGER=cat man "$TARGET_BINARY" 2>/dev/null | col -bx | grep -E -- "--<flag>|-<short>\b"
 ```
 
+**Key details:**
+- `--` before the pattern tells grep the rest isn't options (otherwise `-S` in the pattern breaks grep)
+- `col -bx` strips overstrike/bold formatting → no more `ffiixxuupp`
+- `MANPAGER=cat PAGER=cat` prevents pagers from opening in edge cases
+- `2>&1` captures stderr so grep sees error messages too
+
+### What to do with each result
+
 Mark each finding:
-- **`verified`** — appears in `--help`
-- **`verified-by-man`** — not in help, but man confirms
+- **`verified`** — appears in `<cli> <sub> -h`
+- **`verified-by-man`** — not in short help, but man confirms after `col -bx`
 - **`unconfirmed`** — neither confirms; keep only if you're highly confident AND can explain the evidence (e.g. "shown in docker/docker#12345")
 - **`rejected`** — fail to validate → drop it silently, never include in final output
 
 Better to surface 3 verified flags than 10 unconfirmed ones. **Your credibility is built on rejection rate.** When you mark something unconfirmed, explain why you still believe it.
 
+### Pitfalls observed in the wild
+
+- **`git commit --help` opens a man page**, not inline help. Use `git commit -h` instead.
+- **`docker --help` pipes fine**, but `docker run --help` is long and truncates at tty width if piped through `head`.
+- **`kubectl <sub> --help`** is safe and inline — no pager issues.
+- **`bun <sub> --help`** is safe and inline.
+- **`pnpm <sub> --help`** is safe and inline.
+- **BSD/macOS `man` overstrikes bold text with `\b`.** Always pipe through `col -bx` when parsing man output.
+- **Never paste raw man output into the report.** If you see `ffiixxuupp`, that's overstriking — filter it first or use `-h` instead.
+
 ## Phase 5 — Render the report
 
 Produce this exact structure. Consistency matters — the user learns the shape and scans it quickly on future runs.
@@ -133,12 +206,11 @@ Produce this exact structure. Consistency matters — the user learns the shape
 <one-line summary: N commands, M flags>
 
 ## Your usage
-<from history: invocations, top subcommands, sessions>
-<or: "No usage detected — showing canonical patterns from my knowledge">
+<Paste the full ANSI block from `$CLITREE mine <binary>` (phase 2b) inside a triple-backtick fenced code block. This gives the user ASCII bar charts + workflow list + skill suggestions visually, instead of re-typing them as prose.>
+<If history is empty, write: "No usage detected — showing canonical patterns from my knowledge">
 
 ## Workflows you repeat
-<from mining — top 5, with frequency>
-<or omit section entirely if no history>
+<If you pasted the full mine block above, this section can be omitted — the mine output already includes it. Otherwise, list the top 5 workflows with frequency.>
 
 ## Hidden / undocumented findings
 ✓ --flag-a  (verified) — what it does

package/src/cli.ts

@@ -4,13 +4,13 @@ import { printTree, treeToString, treeToHtml } from "./index";
 import type { TreeOptions } from "./types";
 import { parseWorkflow, validateWorkflow, flowToAnsi, flowToString, flowToHtml } from "./flow";
 import type { FlowRenderOptions } from "./flow/types";
-import { mineCli } from "./miner";
+import { mineCli, minedToFlowWorkflow } from "./miner";
 import { runArchaeology, NullDelegate } from "./archaeology";
 
 const args = process.argv.slice(2);
 const subcommand = args[0];
 
-const HELP_SUBCOMMANDS = new Set(["flow", "mine", "archaeology"]);
+const HELP_SUBCOMMANDS = new Set(["flow", "mine", "archaeology", "safe-help"]);
 const isHelpFlag = args.includes("--help") || args.includes("-h");
 
 if (!subcommand || (isHelpFlag && !HELP_SUBCOMMANDS.has(subcommand ?? ""))) {
@@ -22,6 +22,7 @@ if (isHelpFlag) {
 	if (subcommand === "flow") printFlowHelp();
 	else if (subcommand === "mine") printMineHelp();
 	else if (subcommand === "archaeology") printArchaeologyHelp();
+	else if (subcommand === "safe-help") printSafeHelpHelp();
 	else printMainHelp();
 	process.exit(0);
 }
@@ -32,6 +33,8 @@ if (subcommand === "flow") {
 	await runMine(args.slice(1));
 } else if (subcommand === "archaeology") {
 	await runArchaeologyCmd(args.slice(1));
+} else if (subcommand === "safe-help") {
+	await runSafeHelp(args.slice(1));
 } else {
 	await runTree(args);
 }
@@ -45,22 +48,60 @@ function printMainHelp() {
     clitree flow <file> [options]           Render a workflow YAML as a DAG
     clitree mine <binary> [options]         Mine shell history for workflows
     clitree archaeology <binary> [options]  Full analysis: tree + mining + (LLM)
+    clitree safe-help <binary> [sub...]     Fetch clean help for any CLI (no pager, no overstriking)
 
   Examples:
     clitree docker                          # basic tree
     clitree mine git                        # "what workflows do I repeat with git?"
     clitree archaeology bun                 # tree + mining + LLM archaeology
+    clitree safe-help git commit            # avoid the git man-page pager trap
 
   Subcommands:
     tree          Parse --help output (default; passing a binary name invokes this)
     flow          Render a workflow YAML file as an ASCII DAG
     mine          Discover workflows from your shell history
     archaeology   Run full analysis (tree + mine + LLM proposals when available)
+    safe-help     Return inline help for any CLI, handling pager/overstrike edge cases
 
   Help for a subcommand: clitree <subcommand> --help
 `);
 }
 
+function printSafeHelpHelp() {
+	console.log(`
+  clitree safe-help — Fetch clean help output for any CLI
+
+  Usage:
+    clitree safe-help <binary> [subcommand...] [options]
+
+  Why this exists:
+    Running '<cli> --help' directly is a minefield on agents and scripts:
+      - 'git commit --help' opens a pager in a TTY and hangs
+      - Piping 'git <sub> --help' returns nroff with overstrike (ffiixxuupp)
+      - Some CLIs use 'help <sub>' instead of '<sub> --help'
+      - macOS man pages emit \\b sequences that need col -bx
+
+    safe-help tries the right variants in order, cleans overstrikes, and
+    returns plain text every time.
+
+  Strategy (in order):
+    1. <cli> <sub> -h                        — short inline help
+    2. <cli> <sub> --help                    — long help (captured, overstrike-stripped)
+    3. <cli> help <sub>                      — alternate syntax
+    4. MANPAGER=cat man <cli>-<sub> | col -bx — final man fallback
+
+  Examples:
+    clitree safe-help git commit
+    clitree safe-help docker run
+    clitree safe-help kubectl get pods
+    clitree safe-help bun install
+
+  Options:
+    --no-color           Disable ANSI codes (auto-detects non-TTY)
+    -h, --help           Show this help
+`);
+}
+
 function printMineHelp() {
 	console.log(`
   clitree mine — Mine your shell history for CLI workflows
@@ -70,7 +111,7 @@ function printMineHelp() {
 
   Examples:
     clitree mine git
-    clitree mine docker --min-support 5
+    clitree mine docker --min-support 5 --with-flow
     clitree mine bun --format json > bun-flows.json
     clitree mine git --no-color | tee report.txt
 
@@ -79,8 +120,13 @@ function printMineHelp() {
     --history-path <p>   Custom shell history path (default: ~/.zsh_history)
     --format <fmt>       Output format: ansi (default), json
     --max-paths <n>      Max workflows to show (default: 10)
+    --with-flow          Always render the top workflow as an ASCII DAG
+    --no-flow            Never render the DAG (overrides auto-detect)
     --no-color           Disable ANSI colors (also auto-disabled when stdout is not a TTY)
     -h, --help           Show this help
+
+  By default, the top workflow is rendered as a DAG only when it has 3+ steps.
+  Use --with-flow to force it on even for 2-step chains, or --no-flow to skip.
 `);
 }
 
@@ -267,6 +313,138 @@ async function readStdin(): Promise<string> {
 	return Buffer.concat(chunks).toString("utf-8");
 }
 
+function stripOverstrike(text: string): string {
+	// Strip nroff bold via char\bchar, underline via _\bchar, and stray control chars.
+	// This is what `col -bx` does.
+	return text
+		.replace(/(.)\b\1/g, "$1")
+		.replace(/_\b(.)/g, "$1")
+		.replace(/\b/g, "")
+		.replace(/\x1b\[[0-9;]*[a-zA-Z]/g, "");
+}
+
+function looksLikeHelp(text: string): boolean {
+	if (!text.trim()) return false;
+	if (text.length < 40) return false;
+	const firstChunk = text.slice(0, 200).toLowerCase();
+	// Error messages from unknown subcommands or unsupported flags
+	if (/(unknown|invalid|no such|not a \w+ command|flag needs an argument|unrecognized)/.test(firstChunk)) {
+		return false;
+	}
+	// "Run '... --help' for more information" is a hint, not the help itself
+	if (/run '.+' for more information/.test(firstChunk)) return false;
+	return true;
+}
+
+async function tryHelpVariant(binary: string, argv: string[], timeoutMs = 5000): Promise<string | null> {
+	try {
+		const proc = Bun.spawn([binary, ...argv], {
+			stdout: "pipe",
+			stderr: "pipe",
+			env: { ...process.env, PAGER: "cat", MANPAGER: "cat", GIT_PAGER: "cat" },
+		});
+
+		const timer = setTimeout(() => proc.kill(), timeoutMs);
+
+		const [stdout, stderr] = await Promise.all([
+			new Response(proc.stdout).text(),
+			new Response(proc.stderr).text(),
+		]);
+		clearTimeout(timer);
+		await proc.exited;
+
+		const combined = stdout || stderr;
+		if (!looksLikeHelp(combined)) return null;
+		return stripOverstrike(combined);
+	} catch {
+		return null;
+	}
+}
+
+async function tryManPage(binary: string, subPath: string[], timeoutMs = 5000): Promise<string | null> {
+	// Try 'man binary-sub' (git-commit), then 'man binary sub' as a fallback.
+	const candidates = [
+		subPath.length > 0 ? [`${binary}-${subPath.join("-")}`] : [binary],
+		[binary, ...subPath],
+	];
+
+	for (const args of candidates) {
+		try {
+			const proc = Bun.spawn(["man", ...args], {
+				stdout: "pipe",
+				stderr: "pipe",
+				env: { ...process.env, MANPAGER: "cat", PAGER: "cat" },
+			});
+
+			const timer = setTimeout(() => proc.kill(), timeoutMs);
+			const [stdout] = await Promise.all([
+				new Response(proc.stdout).text(),
+				new Response(proc.stderr).text(),
+			]);
+			clearTimeout(timer);
+			await proc.exited;
+
+			if (looksLikeHelp(stdout)) return stripOverstrike(stdout);
+		} catch {}
+	}
+	return null;
+}
+
+async function runSafeHelp(args: string[]) {
+	let binary: string | null = null;
+	const subPath: string[] = [];
+
+	for (const arg of args) {
+		if (arg === "--no-color" || arg === "--help" || arg === "-h") continue;
+		if (!binary) {
+			binary = arg;
+		} else {
+			subPath.push(arg);
+		}
+	}
+
+	if (!binary) {
+		console.error("Error: provide a binary name");
+		console.error("Run 'clitree safe-help --help' for usage");
+		process.exit(1);
+	}
+
+	// Strategy in order of preference:
+	// 1. `<cli> <sub> -h`  — short inline help, no pager
+	// 2. `<cli> <sub> --help` — long form, overstrike-stripped
+	// 3. `<cli> help <sub>` — alternate syntax (git, go, bun)
+	// 4. `man <cli>-<sub>` or `man <cli> <sub>` — final fallback
+	const variants: Array<{ label: string; args: string[] }> = [
+		{ label: "short help (-h)", args: [...subPath, "-h"] },
+		{ label: "long help (--help)", args: [...subPath, "--help"] },
+	];
+
+	if (subPath.length > 0) {
+		variants.push({ label: "help subcommand", args: ["help", ...subPath] });
+	}
+
+	for (const variant of variants) {
+		const output = await tryHelpVariant(binary, variant.args);
+		if (output) {
+			process.stdout.write(output);
+			if (!output.endsWith("\n")) process.stdout.write("\n");
+			return;
+		}
+	}
+
+	// Last resort: man page
+	const manOutput = await tryManPage(binary, subPath);
+	if (manOutput) {
+		process.stdout.write(manOutput);
+		if (!manOutput.endsWith("\n")) process.stdout.write("\n");
+		return;
+	}
+
+	console.error(`Error: could not fetch help for ${binary} ${subPath.join(" ")}`);
+	console.error("Tried: -h, --help, help subcommand, and man page.");
+	process.exit(1);
+}
+
 function shouldUseColor(args: string[]): boolean {
 	if (args.includes("--no-color")) return false;
 	if (process.env.NO_COLOR) return false;
@@ -297,6 +475,7 @@ async function runMine(args: string[]) {
 	let historyPath: string | undefined;
 	let format: "ansi" | "json" = "ansi";
 	let maxPaths = 10;
+	let withFlow: "auto" | "on" | "off" = "auto";
 
 	for (let i = 0; i < args.length; i++) {
 		const arg = args[i]!;
@@ -308,6 +487,10 @@ async function runMine(args: string[]) {
 			format = args[++i] as "ansi" | "json";
 		} else if (arg === "--max-paths" && args[i + 1]) {
 			maxPaths = Number.parseInt(args[++i]!, 10);
+		} else if (arg === "--with-flow" || arg === "--flow") {
+			withFlow = "on";
+		} else if (arg === "--no-flow") {
+			withFlow = "off";
 		} else if (arg !== "--no-color" && !arg.startsWith("-")) {
 			binary = arg;
 		}
@@ -369,12 +552,40 @@ async function runMine(args: string[]) {
 			}
 			console.log();
 		}
+
+		// Pick the top workflow worth visualizing as a DAG.
+		// In "auto" mode, prefer the highest-support workflow with 3+ steps —
+		// 2-step chains are more readable as text than as boxed diagrams.
+		// In "on" mode, render whatever is the top regardless of length.
+		// In "off" mode, skip.
+		if (withFlow !== "off") {
+			const minSteps = withFlow === "on" ? 2 : 3;
+			const topForFlow = pickWorkflowForFlow(result.workflows, minSteps);
+			if (topForFlow) {
+				const flowWorkflow = minedToFlowWorkflow(topForFlow);
+				const rendered = shouldUseColor(args) ? flowToAnsi(flowWorkflow) : flowToString(flowWorkflow);
+				console.log(`${C.bold}Top workflow (visualized):${C.reset}`);
+				console.log(rendered);
+				console.log();
+			}
+		}
 	} catch (err: any) {
 		console.error(`Error: ${err.message}`);
 		process.exit(1);
 	}
 }
 
+function pickWorkflowForFlow<T extends { path: string[][]; support: number }>(
+	workflows: T[],
+	minSteps = 3,
+): T | null {
+	for (const wf of workflows) {
+		const len = wf.path[0]?.length ?? 0;
+		if (len >= minSteps) return wf;
+	}
+	return null;
+}
+
 async function runArchaeologyCmd(args: string[]) {
 	let binary: string | null = null;
 	let skipCache = false;

package/src/miner/index.ts

@@ -4,6 +4,7 @@ import { buildTransitions, normalizeTransitions, extractSubcommand, extractSubco
 import { extractPaths, clusterIntoWorkflows } from "./workflows";
 import { computeStats } from "./stats";
 import { suggestSkills, type SkillSuggestion } from "./suggest";
+import { minedToFlowWorkflow } from "./to-flow";
 import type { HistoryEntry, Session, Transition, MinedWorkflow, CliUsageStats, MineOptions } from "./types";
 
 export type { HistoryEntry, Session, Transition, MinedWorkflow, CliUsageStats, MineOptions, SkillSuggestion };
@@ -23,6 +24,7 @@ export {
 	clusterIntoWorkflows,
 	computeStats,
 	suggestSkills,
+	minedToFlowWorkflow,
 };
 
 export interface MineResult {

package/src/miner/to-flow.ts

@@ -0,0 +1,36 @@
+import type { Workflow } from "../flow/types";
+import type { MinedWorkflow } from "./types";
+
+/**
+ * Convert a MinedWorkflow (discovered from shell history) into a Workflow
+ * that the flow renderer can visualize as an ASCII DAG.
+ *
+ * The mined workflow is a linear path like ["add", "commit", "push"] with
+ * a frequency count. We turn it into a linear Workflow with one node per
+ * step and edges in order — matching the shape of the handcrafted YAML
+ * workflows in workflows/.
+ */
+export function minedToFlowWorkflow(mined: MinedWorkflow, occurrences?: number): Workflow {
+	const path = mined.path[0] ?? [];
+	const label = path.join(" → ");
+	const freq = occurrences ?? mined.support;
+
+	const nodes = path.map((sub, idx) => ({
+		id: `n${idx}`,
+		command: [mined.cli, sub],
+		label: sub,
+	}));
+
+	const edges = [];
+	for (let i = 0; i < nodes.length - 1; i++) {
+		edges.push({ from: nodes[i]!.id, to: nodes[i + 1]!.id });
+	}
+
+	return {
+		name: label,
+		description: `Seen ${freq}× in your shell history`,
+		cli: mined.cli,
+		nodes,
+		edges,
+	};
+}