@cosyte/terminology 0.0.2 → 0.0.4
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/CHANGELOG.md +82 -0
- package/LICENSE +83 -0
- package/README.md +19 -8
- package/dist/index.cjs +1 -1
- package/dist/index.cjs.map +1 -1
- package/dist/index.d.cts +30 -15
- package/dist/index.d.ts +30 -15
- package/dist/index.mjs +1 -1
- package/dist/index.mjs.map +1 -1
- package/package.json +1 -1
package/dist/index.d.cts
CHANGED
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@@ -2667,8 +2667,8 @@ type ComplexMapInput = {
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*
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* Liberal on load: a structurally unusable RF2 *row* is skipped and surfaced as a warning; only an
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* unusable *source* (empty content, header missing required columns) is a fatal
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* {@link FATAL_CODES.TERM_CROSSWALK_MALFORMED}. Ships **no** SNOMED
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* caller's, under their own licence.
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* {@link FATAL_CODES.TERM_CROSSWALK_MALFORMED}. Ships **no** SNOMED CT release or refset — the rows
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* are the caller's, under their own licence.
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*
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* @param input - Structured `rows`, or a raw RF2 extended-map refset `content`.
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* @returns The immutable {@link ComplexMap}.
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@@ -2808,7 +2808,8 @@ declare const SNOMEDCT_SYSTEM = "http://snomed.info/sct";
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* fabricates** an `RXCUI` or a relationship absent from the loaded data — an absent concept is a typed
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* {@link RxNormUnknown}, an unresolvable NDC a typed {@link NdcUnmapped}, never a guess.
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*
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-
* **No RxNorm
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* **No RxNorm release is bundled**: the engine ships the graph *machinery*, and RxNorm's
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* relationship and term-type *names* (`RELA`, `TERM_TYPES`); the caller
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* supplies the RRF release (the public-domain Current Prescribable Content, or the full BYO
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* release).
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*
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@@ -3018,14 +3019,14 @@ interface RxNormGraph {
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* value) is **skipped and surfaced** as a `TERM_RXNORM_MALFORMED_ROW` warning, never a partial
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* concept/edge, never a crash. Rows that are simply *not of interest* (a non-`RXNORM` atom, an
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* atom-level relationship, a non-`NDC` attribute) are skipped **silently** — they are expected, not
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* faults. Ships **no** RxNorm
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* faults. Ships **no** RxNorm release: every concept/edge is the caller's.
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*
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* @packageDocumentation
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*/
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/**
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* A raw RxNorm RRF release, BYO. The caller supplies the public-domain Current Prescribable Content
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* subset or the full (licensed) release; the engine bundles **no** RxNorm
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* subset or the full (licensed) release; the engine bundles **no** RxNorm release.
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*/
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interface RxNormGraphSource {
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/** The raw `RXNCONSO.RRF` content (pipe-delimited concept/atom names). */
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@@ -3042,7 +3043,7 @@ interface RxNormGraphSource {
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*
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* Parses `RXNCONSO` (concepts), `RXNREL` (directed edges, normalized to the documented direction), and
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* — when supplied — `RXNSAT` (NDC attributes). Liberal on load: a structurally unusable row is a
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-
* skipped, surfaced {@link RxNormLoadWarning}, never partial. Ships **no** RxNorm
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* skipped, surfaced {@link RxNormLoadWarning}, never partial. Ships **no** RxNorm release — the graph
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* is entirely the caller's release.
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*
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* A concept is typed only by a **defining** atom, never by a synonym-class one and never by file
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@@ -3055,7 +3056,7 @@ interface RxNormGraphSource {
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* ```ts
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* import { loadRxNormGraph } from "@cosyte/terminology";
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*
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-
* // Synthetic rows in the RxNorm RRF wire format (no
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* // Synthetic rows in the RxNorm RRF wire format (no RxNorm release is bundled).
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* const graph = loadRxNormGraph({
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* conso: "1|ENG||||||||||RXNORM|IN||lisinopril||N||\n2|ENG||||||||||RXNORM|SCDC||lisinopril 10 MG||N||",
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* // "SCDC(2) has_ingredient IN(1)": subject=RXCUI2=2, object=RXCUI1=1.
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@@ -3309,8 +3310,8 @@ declare function approximateMatch(graph: RxNormGraph, query: string, options?: A
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* The RxNorm **relationship (`RELA`) vocabulary** and the **direction convention** the drug graph is
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* built on — encoded here as published identity facts (like the code-system OID↔URI facts in
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* {@link ../systems/registry}), grounded firsthand on the NLM RxNorm Technical Documentation and the
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-
* UMLS Reference Manual. **No RxNorm
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* *rule* for reading a row's direction.
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* UMLS Reference Manual. **No RxNorm release is bundled** — what ships is the relationship *names*
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* and the *rule* for reading a row's direction.
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*
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* **The direction rule (a documented medication-safety trap).** From the
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* RxNorm Technical Documentation (§12.7) and the UMLS Reference Manual, verbatim: *"the direction of
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@@ -3419,7 +3420,7 @@ declare const RXNORM_SYSTEM = "http://www.nlm.nih.gov/research/umls/rxnorm";
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/**
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* The RxNorm **term-type (`TTY`) vocabulary** relevant to the drug graph — the normal-form ladder and
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* the cross-link kinds — encoded as published identity facts (grounded firsthand on the NLM RxNorm
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-
* Technical Documentation, Appendix 5). **No RxNorm
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* Technical Documentation, Appendix 5). **No RxNorm release is bundled**: what ships is these
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* *labels*, not the drug list.
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*
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* The RxNorm normal-form graph runs `IN → SCDC → SCD → SBD` (ingredient → clinical-drug component →
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@@ -3500,8 +3501,9 @@ declare function isSynonymTermType(tty: TermType): boolean;
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* **FHIR Terminology Module** (`$translate`, `$lookup`, `$validate-code`, `$expand`, …), operating
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* over **consumer-supplied** FHIR resources. It ships the *engine* and **no code-system release**
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* (SNOMED CT / CPT / LOINC / UMLS / RxNorm are strictly BYO). It is not content-free: see
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* **What is bundled** at the end of this note
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-
* (OID ↔ URI)
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+
* **What is bundled** at the end of this note, which includes the UCUM unit table, the code-system
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* *identities* (OID ↔ URI), the SNOMED CT concepts the crosswalk resolver names and RxNorm's
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* relationship and term-type names, each with its copyright.
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*
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* **Code-system identity and ConceptMap translation:**
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*
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@@ -3558,7 +3560,7 @@ declare function isSynonymTermType(tty: TermType): boolean;
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*
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* - {@link loadRxNormGraph} — load `RXNCONSO` (concepts, typed by `TTY`), `RXNREL` (directed `RELA`
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* edges, normalized to the documented `RXCUI2 ⟶RELA⟶ RXCUI1` direction), and optionally `RXNSAT`
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* (NDC attributes) into an immutable graph. Ships **no** RxNorm
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+
* (NDC attributes) into an immutable graph. Ships **no** RxNorm release — BYO.
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* - {@link ingredientsOf} / {@link genericFor} / {@link brandsFor} / {@link doseFormsOf} /
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* {@link consistsOf} / {@link relatedByRela} — graph navigation following **authored** edges only
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* (the engine never synthesizes an inverse). An absent `RXCUI` is a typed {@link RxNormUnknown}.
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@@ -3581,8 +3583,21 @@ declare function isSynonymTermType(tty: TermType): boolean;
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* - the **SNOMED CT concepts the crosswalk resolver names**, each with its description: the four
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* map-category concepts ({@link MAP_CATEGORIES}) a complex-map row's `mapCategoryId` refers to, and
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* the two gender findings (`248152002` Female, `248153007` Male) a gender `IFA` rule is written
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* against. SNOMED CT
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*
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* against. Further SNOMED CT identifiers, and ICD-10-CM codes, appear in the API documentation
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* examples, which are distributed in the compiled declaration files and in the build's
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* sourcemaps. SNOMED CT is copyright © International Health Terminology Standards
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* Development Organisation.
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* - the **RxNorm relationship and term-type names** the drug-graph API is written against: the
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* relationship names in {@link RELA} / {@link RELA_INVERSE} (`has_ingredient`, `tradename_of`, …),
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* and the term-type codes in {@link TERM_TYPES}, each with its name as published by the U.S.
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* National Library of Medicine (`SCD` reads "Semantic Clinical Drug"). Individual RxNorm
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* identifiers also appear in the API documentation examples, with their RxNorm names and term
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* types (for instance `RXCUI` `316151`, "lisinopril 10 MG"), and in `README.md` as well as the
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* places named above. RxNorm is produced by the National Library of Medicine; no RxNorm release
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* is bundled.
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*
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* The `LICENSE` file that ships with this package carries the MIT text for the package's own code
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* and a third-party notices section naming each of the above.
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*
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* The content packs that would change this (the CMS GEM files, the RxNorm Current Prescribable
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* subset) are not bundled; a caller supplies them, as they do a SNOMED CT, CPT, LOINC, UMLS or VSAC
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package/dist/index.d.ts
CHANGED
|
@@ -2667,8 +2667,8 @@ type ComplexMapInput = {
|
|
|
2667
2667
|
*
|
|
2668
2668
|
* Liberal on load: a structurally unusable RF2 *row* is skipped and surfaced as a warning; only an
|
|
2669
2669
|
* unusable *source* (empty content, header missing required columns) is a fatal
|
|
2670
|
-
* {@link FATAL_CODES.TERM_CROSSWALK_MALFORMED}. Ships **no** SNOMED
|
|
2671
|
-
* caller's, under their own licence.
|
|
2670
|
+
* {@link FATAL_CODES.TERM_CROSSWALK_MALFORMED}. Ships **no** SNOMED CT release or refset — the rows
|
|
2671
|
+
* are the caller's, under their own licence.
|
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2672
2672
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*
|
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* @param input - Structured `rows`, or a raw RF2 extended-map refset `content`.
|
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* @returns The immutable {@link ComplexMap}.
|
|
@@ -2808,7 +2808,8 @@ declare const SNOMEDCT_SYSTEM = "http://snomed.info/sct";
|
|
|
2808
2808
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* fabricates** an `RXCUI` or a relationship absent from the loaded data — an absent concept is a typed
|
|
2809
2809
|
* {@link RxNormUnknown}, an unresolvable NDC a typed {@link NdcUnmapped}, never a guess.
|
|
2810
2810
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*
|
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2811
|
-
* **No RxNorm
|
|
2811
|
+
* **No RxNorm release is bundled**: the engine ships the graph *machinery*, and RxNorm's
|
|
2812
|
+
* relationship and term-type *names* (`RELA`, `TERM_TYPES`); the caller
|
|
2812
2813
|
* supplies the RRF release (the public-domain Current Prescribable Content, or the full BYO
|
|
2813
2814
|
* release).
|
|
2814
2815
|
*
|
|
@@ -3018,14 +3019,14 @@ interface RxNormGraph {
|
|
|
3018
3019
|
* value) is **skipped and surfaced** as a `TERM_RXNORM_MALFORMED_ROW` warning, never a partial
|
|
3019
3020
|
* concept/edge, never a crash. Rows that are simply *not of interest* (a non-`RXNORM` atom, an
|
|
3020
3021
|
* atom-level relationship, a non-`NDC` attribute) are skipped **silently** — they are expected, not
|
|
3021
|
-
* faults. Ships **no** RxNorm
|
|
3022
|
+
* faults. Ships **no** RxNorm release: every concept/edge is the caller's.
|
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*
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* @packageDocumentation
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3025
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*/
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|
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/**
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|
* A raw RxNorm RRF release, BYO. The caller supplies the public-domain Current Prescribable Content
|
|
3028
|
-
* subset or the full (licensed) release; the engine bundles **no** RxNorm
|
|
3029
|
+
* subset or the full (licensed) release; the engine bundles **no** RxNorm release.
|
|
3029
3030
|
*/
|
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interface RxNormGraphSource {
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/** The raw `RXNCONSO.RRF` content (pipe-delimited concept/atom names). */
|
|
@@ -3042,7 +3043,7 @@ interface RxNormGraphSource {
|
|
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*
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* Parses `RXNCONSO` (concepts), `RXNREL` (directed edges, normalized to the documented direction), and
|
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3044
3045
|
* — when supplied — `RXNSAT` (NDC attributes). Liberal on load: a structurally unusable row is a
|
|
3045
|
-
* skipped, surfaced {@link RxNormLoadWarning}, never partial. Ships **no** RxNorm
|
|
3046
|
+
* skipped, surfaced {@link RxNormLoadWarning}, never partial. Ships **no** RxNorm release — the graph
|
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3046
3047
|
* is entirely the caller's release.
|
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3047
3048
|
*
|
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3048
3049
|
* A concept is typed only by a **defining** atom, never by a synonym-class one and never by file
|
|
@@ -3055,7 +3056,7 @@ interface RxNormGraphSource {
|
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* ```ts
|
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3056
3057
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* import { loadRxNormGraph } from "@cosyte/terminology";
|
|
3057
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*
|
|
3058
|
-
* // Synthetic rows in the RxNorm RRF wire format (no
|
|
3059
|
+
* // Synthetic rows in the RxNorm RRF wire format (no RxNorm release is bundled).
|
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3059
3060
|
* const graph = loadRxNormGraph({
|
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3060
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* conso: "1|ENG||||||||||RXNORM|IN||lisinopril||N||\n2|ENG||||||||||RXNORM|SCDC||lisinopril 10 MG||N||",
|
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3061
3062
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* // "SCDC(2) has_ingredient IN(1)": subject=RXCUI2=2, object=RXCUI1=1.
|
|
@@ -3309,8 +3310,8 @@ declare function approximateMatch(graph: RxNormGraph, query: string, options?: A
|
|
|
3309
3310
|
* The RxNorm **relationship (`RELA`) vocabulary** and the **direction convention** the drug graph is
|
|
3310
3311
|
* built on — encoded here as published identity facts (like the code-system OID↔URI facts in
|
|
3311
3312
|
* {@link ../systems/registry}), grounded firsthand on the NLM RxNorm Technical Documentation and the
|
|
3312
|
-
* UMLS Reference Manual. **No RxNorm
|
|
3313
|
-
* *rule* for reading a row's direction.
|
|
3313
|
+
* UMLS Reference Manual. **No RxNorm release is bundled** — what ships is the relationship *names*
|
|
3314
|
+
* and the *rule* for reading a row's direction.
|
|
3314
3315
|
*
|
|
3315
3316
|
* **The direction rule (a documented medication-safety trap).** From the
|
|
3316
3317
|
* RxNorm Technical Documentation (§12.7) and the UMLS Reference Manual, verbatim: *"the direction of
|
|
@@ -3419,7 +3420,7 @@ declare const RXNORM_SYSTEM = "http://www.nlm.nih.gov/research/umls/rxnorm";
|
|
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3419
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/**
|
|
3420
3421
|
* The RxNorm **term-type (`TTY`) vocabulary** relevant to the drug graph — the normal-form ladder and
|
|
3421
3422
|
* the cross-link kinds — encoded as published identity facts (grounded firsthand on the NLM RxNorm
|
|
3422
|
-
* Technical Documentation, Appendix 5). **No RxNorm
|
|
3423
|
+
* Technical Documentation, Appendix 5). **No RxNorm release is bundled**: what ships is these
|
|
3423
3424
|
* *labels*, not the drug list.
|
|
3424
3425
|
*
|
|
3425
3426
|
* The RxNorm normal-form graph runs `IN → SCDC → SCD → SBD` (ingredient → clinical-drug component →
|
|
@@ -3500,8 +3501,9 @@ declare function isSynonymTermType(tty: TermType): boolean;
|
|
|
3500
3501
|
* **FHIR Terminology Module** (`$translate`, `$lookup`, `$validate-code`, `$expand`, …), operating
|
|
3501
3502
|
* over **consumer-supplied** FHIR resources. It ships the *engine* and **no code-system release**
|
|
3502
3503
|
* (SNOMED CT / CPT / LOINC / UMLS / RxNorm are strictly BYO). It is not content-free: see
|
|
3503
|
-
* **What is bundled** at the end of this note
|
|
3504
|
-
* (OID ↔ URI)
|
|
3504
|
+
* **What is bundled** at the end of this note, which includes the UCUM unit table, the code-system
|
|
3505
|
+
* *identities* (OID ↔ URI), the SNOMED CT concepts the crosswalk resolver names and RxNorm's
|
|
3506
|
+
* relationship and term-type names, each with its copyright.
|
|
3505
3507
|
*
|
|
3506
3508
|
* **Code-system identity and ConceptMap translation:**
|
|
3507
3509
|
*
|
|
@@ -3558,7 +3560,7 @@ declare function isSynonymTermType(tty: TermType): boolean;
|
|
|
3558
3560
|
*
|
|
3559
3561
|
* - {@link loadRxNormGraph} — load `RXNCONSO` (concepts, typed by `TTY`), `RXNREL` (directed `RELA`
|
|
3560
3562
|
* edges, normalized to the documented `RXCUI2 ⟶RELA⟶ RXCUI1` direction), and optionally `RXNSAT`
|
|
3561
|
-
* (NDC attributes) into an immutable graph. Ships **no** RxNorm
|
|
3563
|
+
* (NDC attributes) into an immutable graph. Ships **no** RxNorm release — BYO.
|
|
3562
3564
|
* - {@link ingredientsOf} / {@link genericFor} / {@link brandsFor} / {@link doseFormsOf} /
|
|
3563
3565
|
* {@link consistsOf} / {@link relatedByRela} — graph navigation following **authored** edges only
|
|
3564
3566
|
* (the engine never synthesizes an inverse). An absent `RXCUI` is a typed {@link RxNormUnknown}.
|
|
@@ -3581,8 +3583,21 @@ declare function isSynonymTermType(tty: TermType): boolean;
|
|
|
3581
3583
|
* - the **SNOMED CT concepts the crosswalk resolver names**, each with its description: the four
|
|
3582
3584
|
* map-category concepts ({@link MAP_CATEGORIES}) a complex-map row's `mapCategoryId` refers to, and
|
|
3583
3585
|
* the two gender findings (`248152002` Female, `248153007` Male) a gender `IFA` rule is written
|
|
3584
|
-
* against. SNOMED CT
|
|
3585
|
-
*
|
|
3586
|
+
* against. Further SNOMED CT identifiers, and ICD-10-CM codes, appear in the API documentation
|
|
3587
|
+
* examples, which are distributed in the compiled declaration files and in the build's
|
|
3588
|
+
* sourcemaps. SNOMED CT is copyright © International Health Terminology Standards
|
|
3589
|
+
* Development Organisation.
|
|
3590
|
+
* - the **RxNorm relationship and term-type names** the drug-graph API is written against: the
|
|
3591
|
+
* relationship names in {@link RELA} / {@link RELA_INVERSE} (`has_ingredient`, `tradename_of`, …),
|
|
3592
|
+
* and the term-type codes in {@link TERM_TYPES}, each with its name as published by the U.S.
|
|
3593
|
+
* National Library of Medicine (`SCD` reads "Semantic Clinical Drug"). Individual RxNorm
|
|
3594
|
+
* identifiers also appear in the API documentation examples, with their RxNorm names and term
|
|
3595
|
+
* types (for instance `RXCUI` `316151`, "lisinopril 10 MG"), and in `README.md` as well as the
|
|
3596
|
+
* places named above. RxNorm is produced by the National Library of Medicine; no RxNorm release
|
|
3597
|
+
* is bundled.
|
|
3598
|
+
*
|
|
3599
|
+
* The `LICENSE` file that ships with this package carries the MIT text for the package's own code
|
|
3600
|
+
* and a third-party notices section naming each of the above.
|
|
3586
3601
|
*
|
|
3587
3602
|
* The content packs that would change this (the CMS GEM files, the RxNorm Current Prescribable
|
|
3588
3603
|
* subset) are not bundled; a caller supplies them, as they do a SNOMED CT, CPT, LOINC, UMLS or VSAC
|
package/dist/index.mjs
CHANGED
|
@@ -4701,7 +4701,7 @@ function approximateMatch(graph, query, options = {}) {
|
|
|
4701
4701
|
}
|
|
4702
4702
|
|
|
4703
4703
|
// src/index.ts
|
|
4704
|
-
var VERSION = "0.0.
|
|
4704
|
+
var VERSION = "0.0.4";
|
|
4705
4705
|
|
|
4706
4706
|
export { COMPLEX_MAP_SOURCE_SYSTEM, DIAGNOSTIC_CODES, FATAL_CODES, HL7_V2_OID_ROOT, HL7_V2_URL_PREFIX, ICD10CM_ORDER_FILE_FIELDS, ICD10CM_SYSTEM, ICD9CM_SYSTEM, MAP_CATEGORIES, NO_MAP_CATEGORIES, RELA, RELA_INVERSE, RXNORM_SYSTEM, SNOMEDCT_SYSTEM, SYSTEM_IDENTITIES, TERM_TYPES, TerminologyError, VERSION, applyComplexMap, applyGem, approximateMatch, asTermType, brandsFor, buildSubsumption, codeableConcept, coding, consistsOf, defaultStatusMapper, doseFormsOf, expand, genericFor, getArray, getBoolean, getConcept, getNumber, getString, ingredientsOf, invertGem, isA, isJsonObject, isSynonymTermType, isUnknownSystem, loadCodeSystem, loadComplexMap, loadConceptMap, loadGems, loadRxNormGraph, loadUcumEssence, loadValueSet, lookup, makeStatus, matchesFilter, parseCsv, parseCsvSource, parseFhirCodeSystem, parseFixedWidth, parseRrf, parseRrfLine, parseUcum, reduce, relatedByRela, resolveNdc, resolveSystem, sliceField, translate, ucumEqual, unsupportedOps, validateCode, validateCodeInValueSet, validateUcum };
|
|
4707
4707
|
//# sourceMappingURL=index.mjs.map
|