@cosyte/synth 0.1.7 → 0.1.9

package/dist/deid/index.mjs

@@ -455,7 +455,12 @@ function isRequireEsmRefusal(error) {
 }
 function loadPeer(specifier, host) {
   if (host.resolve === void 0) return host.require(specifier);
-  const entry = fileURLToPath(host.resolve(specifier));
+  let entry;
+  try {
+    entry = fileURLToPath(host.resolve(specifier));
+  } catch {
+    return host.require(specifier);
+  }
   try {
     return host.require(entry);
   } catch (error) {
@@ -501,7 +506,9 @@ function mshScaffold(rng, type) {
     controlId,
     timestamp,
     version: "2.5",
-    processingId: "P"
+    // MSH-11 processing ID `T` (HL7 table 0103: training), never `P` (production): every message
+    // says it is test data in the field the standard gives for it.
+    processingId: "T"
   });
   return { message, timestamp, controlId };
 }
@@ -971,8 +978,18 @@ function narrative(text) {
     prop("div", str(`<div xmlns="http://www.w3.org/1999/xhtml"><p>${escaped}</p></div>`))
   ]);
 }
+var TEST_DATA_LABEL = Object.freeze({
+  system: "http://terminology.hl7.org/CodeSystem/v3-ActReason",
+  code: "HTEST",
+  display: "test health data"
+});
 function meta(profiles) {
-  return fhirPeer().complex([prop("profile", fhirPeer().list(profiles.map((p) => str(p))))]);
+  const props = [];
+  if (profiles.length > 0) {
+    props.push(prop("profile", fhirPeer().list(profiles.map((p) => str(p)))));
+  }
+  props.push(prop("security", fhirPeer().list([coding(TEST_DATA_LABEL)])));
+  return fhirPeer().complex(props);
 }
 function toFhirDate(ymd) {
   return `${ymd.slice(0, 4)}-${ymd.slice(4, 6)}-${ymd.slice(6, 8)}`;
@@ -1304,7 +1321,7 @@ function generatePatient(options = {}) {
     prop("resourceType", str("Patient")),
     prop("id", str(`syn-patient-${id.id}`))
   ];
-  if (usCore) props.push(prop("meta", meta([US_CORE_PROFILE.PATIENT])));
+  props.push(prop("meta", meta(usCore ? [US_CORE_PROFILE.PATIENT] : [])));
   props.push(
     prop(
       "text",
@@ -1386,7 +1403,7 @@ function generateCondition(options = {}) {
     prop("resourceType", str("Condition")),
     prop("id", str(`syn-cond-${rng.digits(8)}`))
   ];
-  if (usCore) props.push(prop("meta", meta([US_CORE_PROFILE.CONDITION])));
+  props.push(prop("meta", meta(usCore ? [US_CORE_PROFILE.CONDITION] : [])));
   props.push(prop("text", narrative(`Synthetic condition: ${code.display}.`)));
   props.push(
     prop(
@@ -1442,7 +1459,7 @@ function buildObservation(seed, subject, usCore, profileUrl, category, pool, eff
     prop("resourceType", str("Observation")),
     prop("id", str(`syn-obs-${rng.digits(8)}`))
   ];
-  if (usCore) props.push(prop("meta", meta([profileUrl])));
+  props.push(prop("meta", meta(usCore ? [profileUrl] : [])));
   props.push(
     prop("text", narrative(`Synthetic ${category.display.toLowerCase()}: ${concept.display}.`))
   );
@@ -1510,7 +1527,7 @@ function generateMedicationRequest(options = {}) {
     prop("resourceType", str("MedicationRequest")),
     prop("id", str(`syn-medreq-${rng.digits(8)}`))
   ];
-  if (usCore) props.push(prop("meta", meta([US_CORE_PROFILE.MEDICATION_REQUEST])));
+  props.push(prop("meta", meta(usCore ? [US_CORE_PROFILE.MEDICATION_REQUEST] : [])));
   props.push(prop("text", narrative(`Synthetic medication order: ${med.display}.`)));
   props.push(prop("status", str("active")));
   props.push(prop("intent", str("order")));
@@ -1533,7 +1550,7 @@ function generateEncounter(options = {}) {
     prop("resourceType", str("Encounter")),
     prop("id", str(`syn-enc-${rng.digits(8)}`))
   ];
-  if (usCore) props.push(prop("meta", meta([US_CORE_PROFILE.ENCOUNTER])));
+  props.push(prop("meta", meta(usCore ? [US_CORE_PROFILE.ENCOUNTER] : [])));
   props.push(prop("text", narrative(`Synthetic encounter: ${type.display}.`)));
   props.push(
     prop(
@@ -1564,7 +1581,7 @@ function generateImmunization(options = {}) {
     prop("resourceType", str("Immunization")),
     prop("id", str(`syn-imm-${rng.digits(8)}`))
   ];
-  if (usCore) props.push(prop("meta", meta([US_CORE_PROFILE.IMMUNIZATION])));
+  props.push(prop("meta", meta(usCore ? [US_CORE_PROFILE.IMMUNIZATION] : [])));
   props.push(prop("text", narrative(`Synthetic immunization: ${vaccine.display}.`)));
   props.push(prop("status", str("completed")));
   props.push(prop("vaccineCode", codeableConcept(vaccine)));
@@ -1584,7 +1601,7 @@ function generateAllergyIntolerance(options = {}) {
     prop("resourceType", str("AllergyIntolerance")),
     prop("id", str(`syn-allergy-${rng.digits(8)}`))
   ];
-  if (usCore) props.push(prop("meta", meta([US_CORE_PROFILE.ALLERGY_INTOLERANCE])));
+  props.push(prop("meta", meta(usCore ? [US_CORE_PROFILE.ALLERGY_INTOLERANCE] : [])));
   props.push(prop("text", narrative(`Synthetic allergy: ${allergen.display}.`)));
   props.push(
     prop(
@@ -1627,7 +1644,7 @@ function generateProcedure(options = {}) {
     prop("resourceType", str("Procedure")),
     prop("id", str(`syn-proc-${rng.digits(8)}`))
   ];
-  if (usCore) props.push(prop("meta", meta([US_CORE_PROFILE.PROCEDURE])));
+  props.push(prop("meta", meta(usCore ? [US_CORE_PROFILE.PROCEDURE] : [])));
   props.push(prop("text", narrative(`Synthetic procedure: ${code.display}.`)));
   props.push(prop("status", str("completed")));
   props.push(prop("code", codeableConcept(code)));
@@ -1646,7 +1663,7 @@ function generateDiagnosticReport(options = {}) {
     prop("resourceType", str("DiagnosticReport")),
     prop("id", str(`syn-dr-${rng.digits(8)}`))
   ];
-  if (usCore) props.push(prop("meta", meta([US_CORE_PROFILE.DIAGNOSTIC_REPORT_LAB])));
+  props.push(prop("meta", meta(usCore ? [US_CORE_PROFILE.DIAGNOSTIC_REPORT_LAB] : [])));
   props.push(prop("text", narrative(`Synthetic laboratory report: ${code.display}.`)));
   props.push(prop("status", str("final")));
   props.push(
@@ -1683,6 +1700,7 @@ function buildComposition(rng, input) {
   const props = [
     prop("resourceType", str("Composition")),
     prop("id", str(`syn-comp-${rng.digits(8)}`)),
+    prop("meta", meta([])),
     prop("text", narrative("Synthetic continuity-of-care document summary.")),
     prop("status", str("final")),
     prop(
@@ -1718,6 +1736,7 @@ function buildOrganization(rng) {
   return fhirPeer().complex([
     prop("resourceType", str("Organization")),
     prop("id", str(`syn-org-${rng.digits(8)}`)),
+    prop("meta", meta([])),
     prop("text", narrative("Synthetic health organization.")),
     prop(
       "identifier",
@@ -1846,7 +1865,8 @@ function generateBundle(options = {}) {
   });
   const props = [
     prop("resourceType", str("Bundle")),
-    prop("id", str(`syn-bundle-${rng.digits(8)}`))
+    prop("id", str(`syn-bundle-${rng.digits(8)}`)),
+    prop("meta", meta([]))
   ];
   if (type === "document") {
     const id = safe.identifier(rng, "AN");