@cosmol-studio/cosmolkit-core 0.6.0-rc.1 → 0.6.0-rc.3

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@@ -2683,6 +2683,7 @@ export class LigandRef {
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  static Atom(atom: IndexInput): LigandRef;
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  constructor(atom?: IndexInput | null);
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  static readonly ImplicitHydrogen: LigandRef;
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+ static readonly LonePair: LigandRef;
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  readonly atomId: number | undefined;
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  }
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@@ -3203,7 +3204,7 @@ export class Molecule {
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  setOnly3dConformer_(coordinates: Coordinates3D, params?: Coordinate3DInputParams | Coordinate3DInputParamsOptions | null): number;
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  symmetrizedSssrWithParams(params: RingSearchParams | RingSearchParamsOptions): RingSearchResult;
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  symmetrizedSssr(params?: RingSearchParams | RingSearchParamsOptions | null): RingSearchResult;
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- tetrahedralStereo(): ReadonlyArray<TetrahedralStereo>;
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+ tetrahedralStereo(include_unassigned?: BoolInput | null): ReadonlyArray<TetrahedralStereo>;
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  toBuilder(): MoleculeBuilder;
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  toCxSmilesWithParams(params: CxSmilesWriteParams | CxSmilesWriteParamsOptions): string;
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  toCxSmiles(params?: CxSmilesWriteParams | CxSmilesWriteParamsOptions | null): string;
@@ -5709,9 +5710,9 @@ export enum TemplateAttachmentOrderErrorKind {
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  export class TetrahedralStereo {
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  free(): void;
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  [Symbol.dispose](): void;
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- constructor(center: IndexInput, ligands: readonly [LigandRef, LigandRef, LigandRef, LigandRef]);
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+ constructor(center: IndexInput, ligands?: readonly [LigandRef, LigandRef, LigandRef, LigandRef] | null);
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  readonly center: number;
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- readonly ligands: readonly [LigandRef, LigandRef, LigandRef, LigandRef];
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+ readonly ligands: readonly [LigandRef, LigandRef, LigandRef, LigandRef] | undefined;
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  }
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  export class TopologyBlock {
@@ -7197,6 +7198,7 @@ export interface InitOutput {
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  readonly legacystereoerrordetails_valence: (a: number) => number;
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  readonly ligandref_Atom: (a: number, b: number) => void;
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  readonly ligandref_ImplicitHydrogen: () => number;
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+ readonly ligandref_LonePair: () => number;
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  readonly ligandref_atomId: (a: number) => number;
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  readonly ligandref_new: (a: number, b: number) => void;
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  readonly mappingvalidationerror_details: (a: number) => number;
@@ -7388,7 +7390,7 @@ export interface InitOutput {
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  readonly molecule_setOnly3dConformer_: (a: number, b: number, c: number, d: number) => void;
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  readonly molecule_symmetrizedSssr: (a: number, b: number, c: number) => void;
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  readonly molecule_symmetrizedSssrWithParams: (a: number, b: number, c: number) => void;
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- readonly molecule_tetrahedralStereo: (a: number, b: number) => void;
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+ readonly molecule_tetrahedralStereo: (a: number, b: number, c: number) => void;
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  readonly molecule_toBuilder: (a: number) => number;
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  readonly molecule_toCxSmiles: (a: number, b: number, c: number) => void;
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  readonly molecule_toCxSmilesWithParams: (a: number, b: number, c: number) => void;
@@ -8640,32 +8642,32 @@ export interface InitOutput {
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  readonly xyzwriteparams_set_conformerId: (a: number, b: number, c: number) => void;
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  readonly xyzwriteparams_set_precision: (a: number, b: number, c: number) => void;
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  readonly __wasm_bindgen_func_elem_468: (a: number, b: number, c: number) => void;
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- readonly __wasm_bindgen_func_elem_468_2161: (a: number, b: number, c: number) => void;
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- readonly __wasm_bindgen_func_elem_468_2164: (a: number, b: number, c: number) => void;
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+ readonly __wasm_bindgen_func_elem_468_2162: (a: number, b: number, c: number) => void;
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  readonly __wasm_bindgen_func_elem_468_2165: (a: number, b: number, c: number) => void;
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  readonly __wasm_bindgen_func_elem_468_2166: (a: number, b: number, c: number) => void;
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- readonly __wasm_bindgen_func_elem_468_2171: (a: number, b: number, c: number) => void;
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+ readonly __wasm_bindgen_func_elem_468_2167: (a: number, b: number, c: number) => void;
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  readonly __wasm_bindgen_func_elem_468_2172: (a: number, b: number, c: number) => void;
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  readonly __wasm_bindgen_func_elem_468_2173: (a: number, b: number, c: number) => void;
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  readonly __wasm_bindgen_func_elem_468_2174: (a: number, b: number, c: number) => void;
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- readonly __wasm_bindgen_func_elem_468_2176: (a: number, b: number, c: number) => void;
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- readonly __wasm_bindgen_func_elem_468_2181: (a: number, b: number, c: number) => void;
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+ readonly __wasm_bindgen_func_elem_468_2175: (a: number, b: number, c: number) => void;
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+ readonly __wasm_bindgen_func_elem_468_2177: (a: number, b: number, c: number) => void;
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  readonly __wasm_bindgen_func_elem_468_2182: (a: number, b: number, c: number) => void;
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  readonly __wasm_bindgen_func_elem_468_2183: (a: number, b: number, c: number) => void;
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  readonly __wasm_bindgen_func_elem_468_2184: (a: number, b: number, c: number) => void;
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- readonly __wasm_bindgen_func_elem_468_2187: (a: number, b: number, c: number) => void;
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+ readonly __wasm_bindgen_func_elem_468_2185: (a: number, b: number, c: number) => void;
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  readonly __wasm_bindgen_func_elem_468_2188: (a: number, b: number, c: number) => void;
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  readonly __wasm_bindgen_func_elem_468_2189: (a: number, b: number, c: number) => void;
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  readonly __wasm_bindgen_func_elem_468_2190: (a: number, b: number, c: number) => void;
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+ readonly __wasm_bindgen_func_elem_468_2191: (a: number, b: number, c: number) => void;
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  readonly __wasm_bindgen_func_elem_468_22: (a: number, b: number, c: number) => void;
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- readonly __wasm_bindgen_func_elem_468_2200: (a: number, b: number, c: number) => void;
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- readonly __wasm_bindgen_func_elem_468_2202: (a: number, b: number, c: number) => void;
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+ readonly __wasm_bindgen_func_elem_468_2201: (a: number, b: number, c: number) => void;
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  readonly __wasm_bindgen_func_elem_468_2203: (a: number, b: number, c: number) => void;
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- readonly __wasm_bindgen_func_elem_468_2205: (a: number, b: number, c: number) => void;
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+ readonly __wasm_bindgen_func_elem_468_2204: (a: number, b: number, c: number) => void;
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  readonly __wasm_bindgen_func_elem_468_2206: (a: number, b: number, c: number) => void;
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  readonly __wasm_bindgen_func_elem_468_2207: (a: number, b: number, c: number) => void;
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  readonly __wasm_bindgen_func_elem_468_2208: (a: number, b: number, c: number) => void;
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  readonly __wasm_bindgen_func_elem_468_2209: (a: number, b: number, c: number) => void;
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+ readonly __wasm_bindgen_func_elem_468_2210: (a: number, b: number, c: number) => void;
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  readonly __wasm_bindgen_func_elem_468_24: (a: number, b: number, c: number) => void;
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  readonly __wasm_bindgen_func_elem_468_25: (a: number, b: number, c: number) => void;
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  readonly __wasm_bindgen_func_elem_468_26: (a: number, b: number, c: number) => void;
@@ -8673,18 +8675,18 @@ export interface InitOutput {
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  readonly __wasm_bindgen_func_elem_475: (a: number, b: number, c: number) => void;
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  readonly __wasm_bindgen_func_elem_477: (a: number, b: number, c: number) => void;
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  readonly __wasm_bindgen_func_elem_479: (a: number, b: number, c: number) => void;
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- readonly __wasm_bindgen_func_elem_479_1580: (a: number, b: number, c: number) => void;
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+ readonly __wasm_bindgen_func_elem_479_1581: (a: number, b: number, c: number) => void;
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  readonly __wasm_bindgen_func_elem_483: (a: number, b: number, c: number) => void;
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  readonly __wasm_bindgen_func_elem_487: (a: number, b: number, c: number) => void;
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  readonly __wasm_bindgen_func_elem_489: (a: number, b: number, c: number) => void;
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- readonly __wasm_bindgen_func_elem_489_2186: (a: number, b: number, c: number) => void;
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- readonly __wasm_bindgen_func_elem_489_2201: (a: number, b: number, c: number) => void;
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- readonly __wasm_bindgen_func_elem_489_2204: (a: number, b: number, c: number) => void;
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- readonly __wasm_bindgen_func_elem_489_2210: (a: number, b: number, c: number) => void;
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+ readonly __wasm_bindgen_func_elem_489_2187: (a: number, b: number, c: number) => void;
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+ readonly __wasm_bindgen_func_elem_489_2202: (a: number, b: number, c: number) => void;
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+ readonly __wasm_bindgen_func_elem_489_2205: (a: number, b: number, c: number) => void;
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+ readonly __wasm_bindgen_func_elem_489_2211: (a: number, b: number, c: number) => void;
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  readonly __wasm_bindgen_func_elem_491: (a: number, b: number, c: number) => void;
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  readonly __wasm_bindgen_func_elem_494: (a: number, b: number, c: number) => void;
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- readonly __wasm_bindgen_func_elem_494_2185: (a: number, b: number, c: number) => void;
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- readonly __wasm_bindgen_func_elem_494_2195: (a: number, b: number, c: number) => void;
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+ readonly __wasm_bindgen_func_elem_494_2186: (a: number, b: number, c: number) => void;
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+ readonly __wasm_bindgen_func_elem_494_2196: (a: number, b: number, c: number) => void;
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  readonly __wasm_bindgen_func_elem_496: (a: number, b: number, c: number) => void;
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  readonly __wasm_bindgen_func_elem_500: (a: number, b: number, c: number) => void;
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  readonly __wasm_bindgen_func_elem_502: (a: number, b: number, c: number) => void;