@cosmol-studio/cosmolkit-core-analysis 0.6.0-dev.1 → 0.6.0-rc.1

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@@ -5725,7 +5725,7 @@ export class MoleculeBatch {
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  fingerprintPattern(options?: PatternFingerprintParams | PatternFingerprintParamsOptions | null, runtime?: BatchQueryParams | BatchQueryParamsOptions | null, n_jobs?: IndexInput | null, progress_bar?: BoolInput | null): FingerprintBatch;
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  fingerprintTopologicalTorsionWithParams(options: TopologicalTorsionFingerprintParams | TopologicalTorsionFingerprintParamsOptions, runtime: BatchQueryParams | BatchQueryParamsOptions): FingerprintBatch;
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  fingerprintTopologicalTorsion(options?: TopologicalTorsionFingerprintParams | TopologicalTorsionFingerprintParamsOptions | null, runtime?: BatchQueryParams | BatchQueryParamsOptions | null, n_jobs?: IndexInput | null, progress_bar?: BoolInput | null): FingerprintBatch;
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- static fromRecords(records: ReadonlyArray<Molecule | BatchError>, mode: BatchErrorMode): MoleculeBatch;
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+ static fromRecords(records: ReadonlyArray<Molecule | BatchError>, errors: BatchErrorMode): MoleculeBatch;
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  static fromSdfRecordsWithParams(text: TextInput, read: SdfReadParams | SdfReadParamsOptions, errors?: BatchErrorMode | null, n_jobs?: IndexInput | null, progress_bar?: BoolInput | null): MoleculeBatch;
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  static fromSdfRecords(text: TextInput, read?: SdfReadParams | SdfReadParamsOptions | null, errors?: BatchErrorMode | null, n_jobs?: IndexInput | null, progress_bar?: BoolInput | null): MoleculeBatch;
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  static fromSmilesListWithParams(smiles: TextArray, parse: SmilesParseParams | SmilesParseParamsOptions, params: BatchParams | BatchParamsOptions): MoleculeBatch;
@@ -9084,8 +9084,8 @@ export class SubstructMatchParams {
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  /**
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  * Optional caller-provided atom compatibility check.
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  */
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- get extraAtomCheck(): ((query: QueryAtom, target: Atom) => boolean) | undefined;
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- set extraAtomCheck(value: ((query: QueryAtom, target: Atom) => boolean) | null | undefined);
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+ get extraAtomCheck(): ((query: QueryGraph, queryAtom: QueryAtom, target: Molecule, targetAtom: Atom) => boolean) | undefined;
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+ set extraAtomCheck(value: ((query: QueryGraph, queryAtom: QueryAtom, target: Molecule, targetAtom: Atom) => boolean) | null | undefined);
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  /**
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  * Whether `extra_bond_check` replaces the default bond comparison.
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  */
@@ -10172,7 +10172,7 @@ export function molFromSmiles(smiles: TextInput, params?: SmilesParseParams | Sm
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  export function molFromXyzBlock(text: TextInput): Molecule;
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- export function molsFromRecords(records: ReadonlyArray<Molecule | BatchError>, mode: BatchErrorMode): MoleculeBatch;
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+ export function molsFromRecords(records: ReadonlyArray<Molecule | BatchError>, errors: BatchErrorMode): MoleculeBatch;
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  export function molsFromSdfRecords(text: TextInput, read?: SdfReadParams | SdfReadParamsOptions | null, errors?: BatchErrorMode | null, n_jobs?: IndexInput | null, progress_bar?: BoolInput | null): MoleculeBatch;
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