@cornerstonejs/tools 5.0.0-beta.1 → 5.0.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/esm/config.d.ts +4 -0
- package/dist/esm/drawingSvg/drawPath.d.ts +3 -0
- package/dist/esm/drawingSvg/drawPath.js +4 -1
- package/dist/esm/eventListeners/keyboard/keyDownListener.js +2 -2
- package/dist/esm/eventListeners/mouse/getMouseEventPoints.d.ts +1 -1
- package/dist/esm/eventListeners/mouse/getMouseEventPoints.js +19 -1
- package/dist/esm/eventListeners/mouse/mouseDoubleClickListener.js +8 -1
- package/dist/esm/eventListeners/mouse/mouseDownListener.js +37 -5
- package/dist/esm/eventListeners/mouse/mouseMoveListener.js +3 -0
- package/dist/esm/eventListeners/segmentation/imageChangeEventListener.js +60 -92
- package/dist/esm/eventListeners/segmentation/labelmap/onLabelmapSegmentationDataModified.js +49 -21
- package/dist/esm/eventListeners/segmentation/labelmap/performStackLabelmapUpdate.js +7 -13
- package/dist/esm/eventListeners/segmentation/labelmap/performVolumeLabelmapUpdate.js +44 -18
- package/dist/esm/eventListeners/touch/getTouchEventPoints.js +27 -4
- package/dist/esm/eventListeners/touch/touchStartListener.js +27 -9
- package/dist/esm/eventListeners/wheel/wheelListener.js +5 -1
- package/dist/esm/index.d.ts +2 -2
- package/dist/esm/index.js +2 -2
- package/dist/esm/init.js +2 -0
- package/dist/esm/stateManagement/annotation/FrameOfReferenceSpecificAnnotationManager.js +10 -4
- package/dist/esm/stateManagement/segmentation/SegmentationRenderingEngine.js +23 -20
- package/dist/esm/stateManagement/segmentation/SegmentationRepresentationDisplayRegistry.d.ts +12 -0
- package/dist/esm/stateManagement/segmentation/SegmentationRepresentationDisplayRegistry.js +7 -0
- package/dist/esm/stateManagement/segmentation/SegmentationStateManager.d.ts +1 -10
- package/dist/esm/stateManagement/segmentation/SegmentationStateManager.js +28 -149
- package/dist/esm/stateManagement/segmentation/addColorLUT.js +7 -1
- package/dist/esm/stateManagement/segmentation/getCurrentLabelmapImageIdForViewport.js +16 -1
- package/dist/esm/stateManagement/segmentation/helpers/clearSegmentValue.js +9 -7
- package/dist/esm/stateManagement/segmentation/helpers/getSegmentationActor.d.ts +1 -1
- package/dist/esm/stateManagement/segmentation/helpers/getSegmentationActor.js +3 -2
- package/dist/esm/stateManagement/segmentation/helpers/getViewportLabelmapRenderMode.d.ts +5 -0
- package/dist/esm/stateManagement/segmentation/helpers/getViewportLabelmapRenderMode.js +58 -0
- package/dist/esm/stateManagement/segmentation/helpers/labelmapImageMapperSupport.d.ts +52 -0
- package/dist/esm/stateManagement/segmentation/helpers/labelmapImageMapperSupport.js +246 -0
- package/dist/esm/stateManagement/segmentation/helpers/labelmapSegmentationState.d.ts +1 -0
- package/dist/esm/stateManagement/segmentation/helpers/labelmapSegmentationState.js +1 -0
- package/dist/esm/stateManagement/segmentation/helpers/normalizeSegmentationInput.js +12 -1
- package/dist/esm/stateManagement/segmentation/internalAddSegmentationRepresentation.js +3 -3
- package/dist/esm/stateManagement/segmentation/labelmapModel/index.d.ts +9 -0
- package/dist/esm/stateManagement/segmentation/labelmapModel/index.js +7 -0
- package/dist/esm/stateManagement/segmentation/labelmapModel/labelmapEditTransaction.d.ts +54 -0
- package/dist/esm/stateManagement/segmentation/labelmapModel/labelmapEditTransaction.js +224 -0
- package/dist/esm/stateManagement/segmentation/labelmapModel/labelmapImageIdMapping.d.ts +6 -0
- package/dist/esm/stateManagement/segmentation/labelmapModel/labelmapImageIdMapping.js +39 -0
- package/dist/esm/stateManagement/segmentation/labelmapModel/labelmapImageReferenceResolver.d.ts +23 -0
- package/dist/esm/stateManagement/segmentation/labelmapModel/labelmapImageReferenceResolver.js +269 -0
- package/dist/esm/stateManagement/segmentation/labelmapModel/labelmapLayerStore.d.ts +15 -0
- package/dist/esm/stateManagement/segmentation/labelmapModel/labelmapLayerStore.js +160 -0
- package/dist/esm/stateManagement/segmentation/labelmapModel/labelmapLegacyAdapter.d.ts +4 -0
- package/dist/esm/stateManagement/segmentation/labelmapModel/labelmapLegacyAdapter.js +42 -0
- package/dist/esm/stateManagement/segmentation/labelmapModel/labelmapSegmentBindings.d.ts +11 -0
- package/dist/esm/stateManagement/segmentation/labelmapModel/labelmapSegmentBindings.js +73 -0
- package/dist/esm/stateManagement/segmentation/labelmapModel/normalizeLabelmapSegmentationData.d.ts +17 -0
- package/dist/esm/stateManagement/segmentation/labelmapModel/normalizeLabelmapSegmentationData.js +75 -0
- package/dist/esm/stateManagement/segmentation/labelmapModel/privateLabelmap.d.ts +5 -0
- package/dist/esm/stateManagement/segmentation/labelmapModel/privateLabelmap.js +106 -0
- package/dist/esm/stateManagement/segmentation/models/SegmentModel.d.ts +11 -0
- package/dist/esm/stateManagement/segmentation/models/SegmentModel.js +19 -0
- package/dist/esm/stateManagement/segmentation/models/SegmentationModel.d.ts +12 -0
- package/dist/esm/stateManagement/segmentation/models/SegmentationModel.js +23 -0
- package/dist/esm/stateManagement/segmentation/removeSegmentationRepresentations.js +6 -10
- package/dist/esm/stateManagement/segmentation/segmentIndex.js +24 -0
- package/dist/esm/stateManagement/segmentation/segmentationEventManager.js +2 -9
- package/dist/esm/stateManagement/segmentation/segmentationState.d.ts +2 -1
- package/dist/esm/stateManagement/segmentation/segmentationState.js +4 -1
- package/dist/esm/store/SynchronizerManager/Synchronizer.d.ts +3 -1
- package/dist/esm/store/state.js +2 -1
- package/dist/esm/synchronizers/callbacks/imageSliceSyncCallback.js +12 -3
- package/dist/esm/synchronizers/callbacks/presentationViewSyncCallback.js +5 -2
- package/dist/esm/synchronizers/callbacks/zoomPanSyncCallback.js +51 -3
- package/dist/esm/synchronizers/synchronizers/createPresentationViewSynchronizer.d.ts +1 -1
- package/dist/esm/tools/AdvancedMagnifyTool.js +4 -1
- package/dist/esm/tools/CrosshairsTool.d.ts +4 -0
- package/dist/esm/tools/CrosshairsTool.js +95 -41
- package/dist/esm/tools/MagnifyTool.js +3 -1
- package/dist/esm/tools/OrientationControllerTool.d.ts +45 -0
- package/dist/esm/tools/OrientationControllerTool.js +454 -0
- package/dist/esm/tools/OrientationMarkerTool.js +4 -4
- package/dist/esm/tools/PanTool.js +26 -3
- package/dist/esm/tools/PlanarRotateTool.js +19 -4
- package/dist/esm/tools/ReferenceCursors.js +7 -1
- package/dist/esm/tools/SculptorTool/CircleSculptCursor.js +1 -1
- package/dist/esm/tools/TrackballRotateTool.js +3 -2
- package/dist/esm/tools/VolumeCroppingControlTool.d.ts +10 -35
- package/dist/esm/tools/VolumeCroppingControlTool.js +179 -699
- package/dist/esm/tools/VolumeCroppingTool.d.ts +34 -32
- package/dist/esm/tools/VolumeCroppingTool.js +813 -532
- package/dist/esm/tools/WindowLevelTool.d.ts +2 -1
- package/dist/esm/tools/WindowLevelTool.js +48 -4
- package/dist/esm/tools/ZoomTool.d.ts +8 -0
- package/dist/esm/tools/ZoomTool.js +92 -11
- package/dist/esm/tools/annotation/AngleTool.js +38 -32
- package/dist/esm/tools/annotation/ArrowAnnotateTool.js +30 -28
- package/dist/esm/tools/annotation/BidirectionalTool.js +51 -49
- package/dist/esm/tools/annotation/CircleROITool.d.ts +1 -0
- package/dist/esm/tools/annotation/CircleROITool.js +89 -51
- package/dist/esm/tools/annotation/CobbAngleTool.js +1 -1
- package/dist/esm/tools/annotation/DragProbeTool.js +1 -1
- package/dist/esm/tools/annotation/ETDRSGridTool.js +1 -1
- package/dist/esm/tools/annotation/EllipticalROITool.js +46 -39
- package/dist/esm/tools/annotation/HeightTool.js +1 -1
- package/dist/esm/tools/annotation/KeyImageTool.js +11 -11
- package/dist/esm/tools/annotation/LabelTool.js +37 -35
- package/dist/esm/tools/annotation/LengthTool.js +35 -33
- package/dist/esm/tools/annotation/LivewireContourSegmentationTool.js +6 -4
- package/dist/esm/tools/annotation/LivewireContourTool.js +4 -8
- package/dist/esm/tools/annotation/PlanarFreehandContourSegmentationTool.js +6 -4
- package/dist/esm/tools/annotation/PlanarFreehandROITool.js +3 -4
- package/dist/esm/tools/annotation/ProbeTool.js +66 -56
- package/dist/esm/tools/annotation/RectangleROITool.js +48 -37
- package/dist/esm/tools/annotation/RegionSegmentPlusTool.js +1 -1
- package/dist/esm/tools/annotation/RegionSegmentTool.js +1 -1
- package/dist/esm/tools/annotation/SplineContourSegmentationTool.js +1 -1
- package/dist/esm/tools/annotation/SplineROITool.js +60 -56
- package/dist/esm/tools/annotation/UltrasoundDirectionalTool.js +1 -1
- package/dist/esm/tools/annotation/UltrasoundPleuraBLineTool/UltrasoundPleuraBLineTool.js +57 -55
- package/dist/esm/tools/annotation/VideoRedactionTool.js +1 -1
- package/dist/esm/tools/base/AnnotationDisplayTool.js +9 -6
- package/dist/esm/tools/base/AnnotationTool.js +2 -1
- package/dist/esm/tools/base/BaseTool.js +16 -10
- package/dist/esm/tools/base/ContourSegmentationBaseTool.js +1 -1
- package/dist/esm/tools/base/GrowCutBaseTool.js +2 -2
- package/dist/esm/tools/displayTools/Labelmap/addLabelmapToElement.d.ts +2 -4
- package/dist/esm/tools/displayTools/Labelmap/addLabelmapToElement.js +15 -85
- package/dist/esm/tools/displayTools/Labelmap/labelmapActorStyle.d.ts +5 -0
- package/dist/esm/tools/displayTools/Labelmap/labelmapActorStyle.js +191 -0
- package/dist/esm/tools/displayTools/Labelmap/labelmapDisplay.d.ts +4 -3
- package/dist/esm/tools/displayTools/Labelmap/labelmapDisplay.js +48 -209
- package/dist/esm/tools/displayTools/Labelmap/labelmapRenderPlan/createLabelmapRenderPlan.d.ts +3 -0
- package/dist/esm/tools/displayTools/Labelmap/labelmapRenderPlan/createLabelmapRenderPlan.js +51 -0
- package/dist/esm/tools/displayTools/Labelmap/labelmapRenderPlan/index.d.ts +4 -0
- package/dist/esm/tools/displayTools/Labelmap/labelmapRenderPlan/index.js +3 -0
- package/dist/esm/tools/displayTools/Labelmap/labelmapRenderPlan/legacyVolumePlan.d.ts +14 -0
- package/dist/esm/tools/displayTools/Labelmap/labelmapRenderPlan/legacyVolumePlan.js +143 -0
- package/dist/esm/tools/displayTools/Labelmap/labelmapRenderPlan/planarGenericVolumeLabelmap.d.ts +40 -0
- package/dist/esm/tools/displayTools/Labelmap/labelmapRenderPlan/planarGenericVolumeLabelmap.js +79 -0
- package/dist/esm/tools/displayTools/Labelmap/labelmapRenderPlan/removeLabelmapRepresentationFromViewport.d.ts +3 -0
- package/dist/esm/tools/displayTools/Labelmap/labelmapRenderPlan/removeLabelmapRepresentationFromViewport.js +18 -0
- package/dist/esm/tools/displayTools/Labelmap/labelmapRenderPlan/resolveLabelmapRenderPlan.d.ts +9 -0
- package/dist/esm/tools/displayTools/Labelmap/labelmapRenderPlan/resolveLabelmapRenderPlan.js +56 -0
- package/dist/esm/tools/displayTools/Labelmap/labelmapRenderPlan/stackImagePlan.d.ts +11 -0
- package/dist/esm/tools/displayTools/Labelmap/labelmapRenderPlan/stackImagePlan.js +35 -0
- package/dist/esm/tools/displayTools/Labelmap/labelmapRenderPlan/types.d.ts +48 -0
- package/dist/esm/tools/displayTools/Labelmap/labelmapRenderPlan/types.js +0 -0
- package/dist/esm/tools/displayTools/Labelmap/labelmapRenderPlan/volumeSliceImageMapperPlan.d.ts +13 -0
- package/dist/esm/tools/displayTools/Labelmap/labelmapRenderPlan/volumeSliceImageMapperPlan.js +34 -0
- package/dist/esm/tools/displayTools/Labelmap/labelmapRenderPlan.d.ts +2 -0
- package/dist/esm/tools/displayTools/Labelmap/labelmapRenderPlan.js +1 -0
- package/dist/esm/tools/displayTools/Labelmap/labelmapRepresentationUID.d.ts +8 -0
- package/dist/esm/tools/displayTools/Labelmap/labelmapRepresentationUID.js +18 -0
- package/dist/esm/tools/displayTools/Labelmap/removeLabelmapFromElement.js +2 -2
- package/dist/esm/tools/displayTools/Labelmap/removeLabelmapRepresentationData.d.ts +3 -0
- package/dist/esm/tools/displayTools/Labelmap/removeLabelmapRepresentationData.js +16 -0
- package/dist/esm/tools/displayTools/Labelmap/syncStackLabelmapActors.d.ts +2 -0
- package/dist/esm/tools/displayTools/Labelmap/syncStackLabelmapActors.js +135 -0
- package/dist/esm/tools/displayTools/Labelmap/volumeLabelmapImageMapper.d.ts +16 -0
- package/dist/esm/tools/displayTools/Labelmap/volumeLabelmapImageMapper.js +267 -0
- package/dist/esm/tools/displayTools/Labelmap/volumeLabelmapSliceData.d.ts +27 -0
- package/dist/esm/tools/displayTools/Labelmap/volumeLabelmapSliceData.js +185 -0
- package/dist/esm/tools/displayTools/registerBuiltInSegmentationRepresentationDisplays.d.ts +1 -0
- package/dist/esm/tools/displayTools/registerBuiltInSegmentationRepresentationDisplays.js +16 -0
- package/dist/esm/tools/index.d.ts +2 -1
- package/dist/esm/tools/index.js +2 -1
- package/dist/esm/tools/segmentation/BrushTool.d.ts +9 -2
- package/dist/esm/tools/segmentation/BrushTool.js +123 -26
- package/dist/esm/tools/segmentation/CircleScissorsTool.js +19 -36
- package/dist/esm/tools/segmentation/LabelmapBaseTool.d.ts +2 -3
- package/dist/esm/tools/segmentation/LabelmapBaseTool.js +77 -46
- package/dist/esm/tools/segmentation/LabelmapEditWithContour.js +3 -3
- package/dist/esm/tools/segmentation/PaintFillTool.js +11 -4
- package/dist/esm/tools/segmentation/RectangleROIStartEndThresholdTool.d.ts +2 -0
- package/dist/esm/tools/segmentation/RectangleROIStartEndThresholdTool.js +16 -8
- package/dist/esm/tools/segmentation/RectangleScissorsTool.js +13 -6
- package/dist/esm/tools/segmentation/SegmentBidirectionalTool.js +63 -61
- package/dist/esm/tools/segmentation/SegmentSelectTool.js +4 -4
- package/dist/esm/tools/segmentation/SphereScissorsTool.js +11 -31
- package/dist/esm/tools/segmentation/strategies/BrushStrategy.d.ts +7 -0
- package/dist/esm/tools/segmentation/strategies/BrushStrategy.js +47 -24
- package/dist/esm/tools/segmentation/strategies/compositions/circularCursor.js +49 -21
- package/dist/esm/tools/segmentation/strategies/compositions/determineSegmentIndex.js +2 -2
- package/dist/esm/tools/segmentation/strategies/compositions/dynamicThreshold.js +5 -1
- package/dist/esm/tools/segmentation/strategies/compositions/islandRemovalComposition.js +2 -2
- package/dist/esm/tools/segmentation/strategies/compositions/preview.js +2 -2
- package/dist/esm/tools/segmentation/strategies/compositions/setValue.js +14 -6
- package/dist/esm/tools/segmentation/strategies/fillCircle.d.ts +3 -1
- package/dist/esm/tools/segmentation/strategies/fillCircle.js +38 -31
- package/dist/esm/tools/segmentation/strategies/fillSphere.js +11 -3
- package/dist/esm/tools/segmentation/strategies/utils/crossLayerErase.d.ts +4 -0
- package/dist/esm/tools/segmentation/strategies/utils/crossLayerErase.js +23 -0
- package/dist/esm/tools/segmentation/strategies/utils/getStrategyData.js +1 -1
- package/dist/esm/tools/segmentation/strategies/utils/handleUseSegmentCenterIndex.js +12 -11
- package/dist/esm/tools/segmentation/strategies/utils/labelmapOverlap.d.ts +4 -0
- package/dist/esm/tools/segmentation/strategies/utils/labelmapOverlap.js +41 -0
- package/dist/esm/tools/segmentation/strategies/utils/overwritePolicy.d.ts +3 -0
- package/dist/esm/tools/segmentation/strategies/utils/overwritePolicy.js +31 -0
- package/dist/esm/tools/segmentation/strategies/utils/segmentSeparation.d.ts +3 -0
- package/dist/esm/tools/segmentation/strategies/utils/segmentSeparation.js +38 -0
- package/dist/esm/tools/segmentation/utils/LazyBrushEditController.d.ts +19 -0
- package/dist/esm/tools/segmentation/utils/LazyBrushEditController.js +55 -0
- package/dist/esm/tools/segmentation/utils/lazyBrushPreview.d.ts +3 -0
- package/dist/esm/tools/segmentation/utils/lazyBrushPreview.js +34 -0
- package/dist/esm/tools/segmentation/utils/shouldUseLazyLabelmapEditing.d.ts +3 -0
- package/dist/esm/tools/segmentation/utils/shouldUseLazyLabelmapEditing.js +42 -0
- package/dist/esm/types/ISynchronizerEventHandler.d.ts +2 -1
- package/dist/esm/types/LabelmapToolOperationData.d.ts +5 -0
- package/dist/esm/types/LabelmapTypes.d.ts +29 -6
- package/dist/esm/types/SegmentationStateTypes.d.ts +6 -0
- package/dist/esm/utilities/calibrateImageSpacing.js +17 -2
- package/dist/esm/utilities/contours/AnnotationToPointData.js +1 -1
- package/dist/esm/utilities/draw3D/addLine3DBetweenPoints.d.ts +7 -0
- package/dist/esm/utilities/draw3D/addLine3DBetweenPoints.js +34 -0
- package/dist/esm/utilities/draw3D/calculateAdaptiveSphereRadius.d.ts +6 -0
- package/dist/esm/utilities/draw3D/calculateAdaptiveSphereRadius.js +7 -0
- package/dist/esm/utilities/draw3D/index.d.ts +2 -0
- package/dist/esm/utilities/draw3D/index.js +2 -0
- package/dist/esm/utilities/drawing/getTextBoxCoordsCanvas.js +22 -14
- package/dist/esm/utilities/getCenterAndRadiusInCanvas.d.ts +6 -0
- package/dist/esm/utilities/getCenterAndRadiusInCanvas.js +26 -0
- package/dist/esm/utilities/getEllipseWorldCoordinates.d.ts +2 -0
- package/dist/esm/utilities/getEllipseWorldCoordinates.js +26 -0
- package/dist/esm/utilities/getSphereBoundsInfo.js +5 -1
- package/dist/esm/utilities/getViewportICamera.d.ts +4 -0
- package/dist/esm/utilities/getViewportICamera.js +23 -0
- package/dist/esm/utilities/getViewportsForAnnotation.js +5 -1
- package/dist/esm/utilities/index.d.ts +2 -1
- package/dist/esm/utilities/index.js +2 -1
- package/dist/esm/utilities/interactionDragCoordinator.d.ts +5 -0
- package/dist/esm/utilities/interactionDragCoordinator.js +16 -0
- package/dist/esm/utilities/math/basic/BasicStatsCalculator.js +9 -7
- package/dist/esm/utilities/pointInSurroundingSphereCallback.js +8 -1
- package/dist/esm/utilities/segmentation/InterpolationManager/InterpolationManager.js +121 -118
- package/dist/esm/utilities/segmentation/SegmentStatsCalculator.js +5 -4
- package/dist/esm/utilities/segmentation/VolumetricCalculator.js +1 -1
- package/dist/esm/utilities/segmentation/createLabelmapVolumeForViewport.js +1 -1
- package/dist/esm/utilities/segmentation/getReferenceVolumeForSegmentation.js +1 -1
- package/dist/esm/utilities/segmentation/getReferenceVolumeForSegmentationVolume.js +11 -2
- package/dist/esm/utilities/segmentation/getSegmentIndexAtLabelmapBorder.js +36 -17
- package/dist/esm/utilities/segmentation/getSegmentIndexAtWorldPoint.js +42 -25
- package/dist/esm/utilities/segmentation/getUniqueSegmentIndices.js +3 -30
- package/dist/esm/utilities/segmentation/index.d.ts +2 -1
- package/dist/esm/utilities/segmentation/index.js +2 -1
- package/dist/esm/utilities/segmentation/utilsForWorker.js +6 -2
- package/dist/esm/utilities/segmentation/validateLabelmap.js +1 -1
- package/dist/esm/utilities/stackPrefetch/stackPrefetch.js +0 -1
- package/dist/esm/utilities/touch/index.js +3 -2
- package/dist/esm/utilities/viewportCapabilities.d.ts +16 -0
- package/dist/esm/utilities/viewportCapabilities.js +18 -0
- package/dist/esm/utilities/viewportFilters/filterViewportsWithParallelNormals.d.ts +1 -1
- package/dist/esm/utilities/viewportFilters/filterViewportsWithParallelNormals.js +12 -4
- package/dist/esm/utilities/viewportFilters/filterViewportsWithSameOrientation.d.ts +1 -1
- package/dist/esm/utilities/viewportFilters/filterViewportsWithSameOrientation.js +11 -4
- package/dist/esm/utilities/viewportFilters/getViewportIdsWithToolToRender.js +1 -1
- package/dist/esm/utilities/viewportPresentation.d.ts +3 -0
- package/dist/esm/utilities/viewportPresentation.js +26 -0
- package/dist/esm/utilities/volumeCropping/computePlanePlaneIntersection.d.ts +6 -0
- package/dist/esm/utilities/volumeCropping/computePlanePlaneIntersection.js +37 -0
- package/dist/esm/utilities/volumeCropping/constants.d.ts +31 -0
- package/dist/esm/utilities/volumeCropping/constants.js +31 -0
- package/dist/esm/utilities/volumeCropping/copyClippingPlanes.d.ts +2 -0
- package/dist/esm/utilities/volumeCropping/copyClippingPlanes.js +6 -0
- package/dist/esm/utilities/volumeCropping/extractVolumeDirectionVectors.d.ts +9 -0
- package/dist/esm/utilities/volumeCropping/extractVolumeDirectionVectors.js +9 -0
- package/dist/esm/utilities/volumeCropping/findLineBoundsIntersection.d.ts +5 -0
- package/dist/esm/utilities/volumeCropping/findLineBoundsIntersection.js +50 -0
- package/dist/esm/utilities/volumeCropping/getColorKeyForPlaneIndex.d.ts +1 -0
- package/dist/esm/utilities/volumeCropping/getColorKeyForPlaneIndex.js +13 -0
- package/dist/esm/utilities/volumeCropping/getOrientationFromNormal.d.ts +2 -0
- package/dist/esm/utilities/volumeCropping/getOrientationFromNormal.js +19 -0
- package/dist/esm/utilities/volumeCropping/index.d.ts +9 -0
- package/dist/esm/utilities/volumeCropping/index.js +9 -0
- package/dist/esm/utilities/volumeCropping/parseCornerKey.d.ts +8 -0
- package/dist/esm/utilities/volumeCropping/parseCornerKey.js +11 -0
- package/dist/esm/utilities/volumeCropping/types.d.ts +5 -0
- package/dist/esm/utilities/volumeCropping/types.js +0 -0
- package/dist/esm/utilities/vtkjs/AnnotatedRhombicuboctahedronActor/index.d.ts +31 -0
- package/dist/esm/utilities/vtkjs/AnnotatedRhombicuboctahedronActor/index.js +391 -0
- package/dist/esm/utilities/vtkjs/OrientationControllerWidget/index.d.ts +69 -0
- package/dist/esm/utilities/vtkjs/OrientationControllerWidget/index.js +804 -0
- package/dist/esm/utilities/vtkjs/RhombicuboctahedronSource/index.d.ts +7 -0
- package/dist/esm/utilities/vtkjs/RhombicuboctahedronSource/index.js +144 -0
- package/dist/esm/utilities/vtkjs/index.d.ts +3 -0
- package/dist/esm/utilities/vtkjs/index.js +3 -0
- package/dist/esm/version.d.ts +1 -1
- package/dist/esm/version.js +1 -1
- package/package.json +10 -9
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import vtkDataArray from '@kitware/vtk.js/Common/Core/DataArray';
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import { triggerSegmentationRender } from '../../../stateManagement/segmentation/SegmentationRenderingEngine';
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import { updateLabelmapSegmentationImageReferences } from '../../../stateManagement/segmentation/updateLabelmapSegmentationImageReferences';
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import { getCurrentLabelmapImageIdsForViewport } from '../../../stateManagement/segmentation/getCurrentLabelmapImageIdForViewport';
|
|
7
|
+
import { getLabelmapActorEntries } from '../../../stateManagement/segmentation/helpers/getSegmentationActor';
|
|
8
|
+
import getViewportLabelmapRenderMode from '../../../stateManagement/segmentation/helpers/getViewportLabelmapRenderMode';
|
|
9
|
+
import { createLabelmapRepresentationUID } from './labelmapRepresentationUID';
|
|
10
|
+
import removeLabelmapRepresentationData from './removeLabelmapRepresentationData';
|
|
11
|
+
export function syncStackLabelmapActors(viewport, segmentationId) {
|
|
12
|
+
if (typeof viewport
|
|
13
|
+
.getCurrentImageId !== 'function') {
|
|
14
|
+
return;
|
|
15
|
+
}
|
|
16
|
+
const currentImageId = viewport.getCurrentImageId();
|
|
17
|
+
if (!currentImageId) {
|
|
18
|
+
return;
|
|
19
|
+
}
|
|
20
|
+
updateLabelmapSegmentationImageReferences(viewport.id, segmentationId);
|
|
21
|
+
const derivedImageIds = getCurrentLabelmapImageIdsForViewport(viewport.id, segmentationId) ?? [];
|
|
22
|
+
const derivedImageIdSet = new Set(derivedImageIds);
|
|
23
|
+
const labelmapActorEntries = getLabelmapActorEntries(viewport.id, segmentationId) ?? [];
|
|
24
|
+
const staleActorEntries = labelmapActorEntries.filter((actorEntry) => !derivedImageIdSet.has(actorEntry.referencedId));
|
|
25
|
+
let shouldTriggerSegmentationRender = false;
|
|
26
|
+
let shouldRenderViewport = staleActorEntries.length > 0;
|
|
27
|
+
if (staleActorEntries.length) {
|
|
28
|
+
const legacyActorEntryUIDs = [];
|
|
29
|
+
staleActorEntries.forEach((actorEntry) => {
|
|
30
|
+
if (removeLabelmapRepresentationData(viewport, segmentationId, actorEntry)) {
|
|
31
|
+
return;
|
|
32
|
+
}
|
|
33
|
+
legacyActorEntryUIDs.push(actorEntry.uid);
|
|
34
|
+
});
|
|
35
|
+
if (legacyActorEntryUIDs.length) {
|
|
36
|
+
viewport.removeActors(legacyActorEntryUIDs);
|
|
37
|
+
}
|
|
38
|
+
shouldTriggerSegmentationRender = true;
|
|
39
|
+
}
|
|
40
|
+
const renderMode = getViewportLabelmapRenderMode(viewport);
|
|
41
|
+
const defaultActorRenderMode = viewport.getDefaultActor()?.actorMapper
|
|
42
|
+
?.renderMode;
|
|
43
|
+
const currentImage = cache.getImage(currentImageId) ||
|
|
44
|
+
{
|
|
45
|
+
imageId: currentImageId,
|
|
46
|
+
};
|
|
47
|
+
const { origin: currentOrigin } = viewport.getImageDataMetadata(currentImage);
|
|
48
|
+
derivedImageIds.forEach((derivedImageId) => {
|
|
49
|
+
const derivedImage = cache.getImage(derivedImageId);
|
|
50
|
+
if (!derivedImage) {
|
|
51
|
+
console.warn('No derived image found in the cache for segmentation representation', { segmentationId, derivedImageId });
|
|
52
|
+
return;
|
|
53
|
+
}
|
|
54
|
+
const segmentationActorEntry = getLabelmapActorEntries(viewport.id, segmentationId)?.find((actorEntry) => actorEntry.referencedId === derivedImageId);
|
|
55
|
+
if (!segmentationActorEntry) {
|
|
56
|
+
const representationUID = createLabelmapRepresentationUID({
|
|
57
|
+
segmentationId,
|
|
58
|
+
referencedId: derivedImage.imageId,
|
|
59
|
+
});
|
|
60
|
+
if (renderMode === 'image' &&
|
|
61
|
+
defaultActorRenderMode === ActorRenderMode.CPU_IMAGE) {
|
|
62
|
+
viewport.addImages([
|
|
63
|
+
{
|
|
64
|
+
dataId: representationUID,
|
|
65
|
+
imageId: derivedImageId,
|
|
66
|
+
reference: {
|
|
67
|
+
kind: 'segmentation',
|
|
68
|
+
segmentationId,
|
|
69
|
+
representationUID,
|
|
70
|
+
labelmapId: derivedImage.imageId,
|
|
71
|
+
},
|
|
72
|
+
representationUID,
|
|
73
|
+
},
|
|
74
|
+
]);
|
|
75
|
+
}
|
|
76
|
+
else {
|
|
77
|
+
const { dimensions, spacing, direction } = viewport.getImageDataMetadata(derivedImage);
|
|
78
|
+
const constructor = derivedImage.voxelManager.getConstructor();
|
|
79
|
+
const newPixelData = derivedImage.voxelManager.getScalarData();
|
|
80
|
+
const values = new constructor(newPixelData);
|
|
81
|
+
const scalarArray = vtkDataArray.newInstance({
|
|
82
|
+
dataType: vtkDataArray.getDataType(values),
|
|
83
|
+
name: 'Pixels',
|
|
84
|
+
numberOfComponents: 1,
|
|
85
|
+
values,
|
|
86
|
+
});
|
|
87
|
+
const imageData = vtkImageData.newInstance();
|
|
88
|
+
imageData.setDimensions(dimensions[0], dimensions[1], 1);
|
|
89
|
+
imageData.setSpacing(spacing);
|
|
90
|
+
imageData.setDirection(direction);
|
|
91
|
+
imageData.setOrigin(currentOrigin);
|
|
92
|
+
imageData.getPointData().setScalars(scalarArray);
|
|
93
|
+
imageData.modified();
|
|
94
|
+
viewport.addImages([
|
|
95
|
+
{
|
|
96
|
+
dataId: representationUID,
|
|
97
|
+
imageId: derivedImageId,
|
|
98
|
+
reference: {
|
|
99
|
+
kind: 'segmentation',
|
|
100
|
+
segmentationId,
|
|
101
|
+
representationUID,
|
|
102
|
+
labelmapId: derivedImage.imageId,
|
|
103
|
+
},
|
|
104
|
+
representationUID,
|
|
105
|
+
callback: ({ imageActor }) => {
|
|
106
|
+
imageActor.getMapper().setInputData(imageData);
|
|
107
|
+
},
|
|
108
|
+
},
|
|
109
|
+
]);
|
|
110
|
+
}
|
|
111
|
+
shouldTriggerSegmentationRender = true;
|
|
112
|
+
shouldRenderViewport = true;
|
|
113
|
+
return;
|
|
114
|
+
}
|
|
115
|
+
const actorMapper = segmentationActorEntry.actorMapper;
|
|
116
|
+
const mapper = actorMapper?.mapper
|
|
117
|
+
? actorMapper.mapper
|
|
118
|
+
: segmentationActorEntry.actor.getMapper();
|
|
119
|
+
const segmentationImageData = mapper.getInputData();
|
|
120
|
+
segmentationImageData.modified();
|
|
121
|
+
if (segmentationImageData.setDerivedImage) {
|
|
122
|
+
segmentationImageData.setDerivedImage(derivedImage);
|
|
123
|
+
}
|
|
124
|
+
else {
|
|
125
|
+
utilities.updateVTKImageDataWithCornerstoneImage(segmentationImageData, derivedImage);
|
|
126
|
+
}
|
|
127
|
+
shouldRenderViewport = true;
|
|
128
|
+
});
|
|
129
|
+
if (shouldTriggerSegmentationRender) {
|
|
130
|
+
triggerSegmentationRender(viewport.id);
|
|
131
|
+
}
|
|
132
|
+
if (shouldRenderViewport) {
|
|
133
|
+
viewport.render();
|
|
134
|
+
}
|
|
135
|
+
}
|
|
@@ -0,0 +1,16 @@
|
|
|
1
|
+
import { type Types } from '@cornerstonejs/core';
|
|
2
|
+
import type { Segmentation } from '../../../types/SegmentationStateTypes';
|
|
3
|
+
export declare function getVolumeLabelmapImageMapperRepresentationUIDs(viewport: Types.IViewport, segmentationId: string, segmentation: Segmentation): string[];
|
|
4
|
+
export declare function addVolumeLabelmapImageMapperActors(args: {
|
|
5
|
+
viewport: Types.IViewport;
|
|
6
|
+
segmentation: Segmentation;
|
|
7
|
+
segmentationId: string;
|
|
8
|
+
}): Promise<void>;
|
|
9
|
+
export declare function updateVolumeLabelmapImageMapperActors(args: {
|
|
10
|
+
viewport: Types.IViewport;
|
|
11
|
+
segmentation: Segmentation;
|
|
12
|
+
segmentationId: string;
|
|
13
|
+
actorEntries?: Types.ActorEntry[];
|
|
14
|
+
}): void;
|
|
15
|
+
export declare function removeVolumeLabelmapImageMapperActors(viewport: Types.IViewport, segmentationId: string): void;
|
|
16
|
+
export declare function getLabelmapForActorReference(segmentation: Segmentation, referencedId?: string): import("../../../types/LabelmapTypes").LabelmapLayer;
|
|
@@ -0,0 +1,267 @@
|
|
|
1
|
+
import vtkImageMapper from '@kitware/vtk.js/Rendering/Core/ImageMapper';
|
|
2
|
+
import vtkImageSlice from '@kitware/vtk.js/Rendering/Core/ImageSlice';
|
|
3
|
+
import { ActorRenderMode, Enums } from '@cornerstonejs/core';
|
|
4
|
+
import { canRenderVolumeViewportLabelmapAsImage } from '../../../stateManagement/segmentation/helpers/labelmapImageMapperSupport';
|
|
5
|
+
import { getLabelmap, getOrCreateLabelmapVolume, getLabelmaps, getLabelmapForImageId, getLabelmapForVolumeId, } from '../../../stateManagement/segmentation/helpers/labelmapSegmentationState';
|
|
6
|
+
import { createLabelmapRepresentationUID, isLabelmapRepresentationUID, } from './labelmapRepresentationUID';
|
|
7
|
+
import { applyPlanarOverlayDepthOffset, createSliceImageData, getSliceRenderingCamera, getSliceState, } from './volumeLabelmapSliceData';
|
|
8
|
+
const OVERLAY_RENDERER_SUFFIX = 'labelmap-image-mapper-overlay';
|
|
9
|
+
function isPlanarSliceRenderingViewport(viewport) {
|
|
10
|
+
const compatibilityViewport = viewport;
|
|
11
|
+
return (compatibilityViewport.type === Enums.ViewportType.PLANAR_NEXT &&
|
|
12
|
+
typeof compatibilityViewport.addImages === 'function' &&
|
|
13
|
+
typeof compatibilityViewport.getCurrentImageId === 'function' &&
|
|
14
|
+
typeof compatibilityViewport.render === 'function');
|
|
15
|
+
}
|
|
16
|
+
function createActorEntry(args) {
|
|
17
|
+
const mapper = vtkImageMapper.newInstance();
|
|
18
|
+
mapper.setInputData(args.imageData);
|
|
19
|
+
const actor = vtkImageSlice.newInstance();
|
|
20
|
+
actor.setMapper(mapper);
|
|
21
|
+
return {
|
|
22
|
+
uid: args.representationUID,
|
|
23
|
+
actor,
|
|
24
|
+
actorMapper: {
|
|
25
|
+
actor,
|
|
26
|
+
mapper,
|
|
27
|
+
renderMode: ActorRenderMode.VTK_IMAGE,
|
|
28
|
+
},
|
|
29
|
+
referencedId: args.referencedId,
|
|
30
|
+
representationUID: args.representationUID,
|
|
31
|
+
};
|
|
32
|
+
}
|
|
33
|
+
function getOverlayRendererId(viewportId) {
|
|
34
|
+
return `${viewportId}::${OVERLAY_RENDERER_SUFFIX}`;
|
|
35
|
+
}
|
|
36
|
+
function getOrCreateOverlayRenderer(viewport) {
|
|
37
|
+
const renderingEngine = viewport.getRenderingEngine();
|
|
38
|
+
const offscreenMultiRenderWindow = renderingEngine.getOffscreenMultiRenderWindow(viewport.id);
|
|
39
|
+
const overlayRendererId = getOverlayRendererId(viewport.id);
|
|
40
|
+
const baseRenderer = viewport.getRenderer();
|
|
41
|
+
const baseViewport = baseRenderer.getViewport();
|
|
42
|
+
let overlayRenderer = offscreenMultiRenderWindow.getRenderer(overlayRendererId);
|
|
43
|
+
if (!overlayRenderer) {
|
|
44
|
+
const renderWindow = offscreenMultiRenderWindow.getRenderWindow();
|
|
45
|
+
if (renderWindow.getNumberOfLayers() < 2) {
|
|
46
|
+
renderWindow.setNumberOfLayers(2);
|
|
47
|
+
}
|
|
48
|
+
offscreenMultiRenderWindow.addRenderer({
|
|
49
|
+
viewport: baseViewport,
|
|
50
|
+
id: overlayRendererId,
|
|
51
|
+
background: [0, 0, 0],
|
|
52
|
+
});
|
|
53
|
+
overlayRenderer = offscreenMultiRenderWindow.getRenderer(overlayRendererId);
|
|
54
|
+
overlayRenderer.setLayer(1);
|
|
55
|
+
overlayRenderer.setPreserveDepthBuffer(false);
|
|
56
|
+
}
|
|
57
|
+
overlayRenderer.setActiveCamera(baseRenderer.getActiveCamera());
|
|
58
|
+
overlayRenderer.setViewport(baseViewport[0], baseViewport[1], baseViewport[2], baseViewport[3]);
|
|
59
|
+
return overlayRenderer;
|
|
60
|
+
}
|
|
61
|
+
function moveActorToOverlayRenderer(viewport, actorEntry) {
|
|
62
|
+
const baseRenderer = viewport.getRenderer();
|
|
63
|
+
const overlayRenderer = getOrCreateOverlayRenderer(viewport);
|
|
64
|
+
baseRenderer.removeActor(actorEntry.actor);
|
|
65
|
+
overlayRenderer.addActor(actorEntry.actor);
|
|
66
|
+
}
|
|
67
|
+
export function getVolumeLabelmapImageMapperRepresentationUIDs(viewport, segmentationId, segmentation) {
|
|
68
|
+
if (!canRenderVolumeViewportLabelmapAsImage(viewport)) {
|
|
69
|
+
return [];
|
|
70
|
+
}
|
|
71
|
+
const useStablePlanarUID = isPlanarSliceRenderingViewport(viewport);
|
|
72
|
+
return getLabelmaps(segmentation)
|
|
73
|
+
.map((layer) => {
|
|
74
|
+
const volume = getOrCreateLabelmapVolume(layer);
|
|
75
|
+
if (!volume) {
|
|
76
|
+
return;
|
|
77
|
+
}
|
|
78
|
+
const state = getSliceState(viewport, volume);
|
|
79
|
+
if (!state) {
|
|
80
|
+
return;
|
|
81
|
+
}
|
|
82
|
+
return createLabelmapRepresentationUID({
|
|
83
|
+
segmentationId,
|
|
84
|
+
referencedId: layer.labelmapId,
|
|
85
|
+
...(useStablePlanarUID ? {} : { sliceStateKey: state.key }),
|
|
86
|
+
});
|
|
87
|
+
})
|
|
88
|
+
.filter((value) => !!value);
|
|
89
|
+
}
|
|
90
|
+
export async function addVolumeLabelmapImageMapperActors(args) {
|
|
91
|
+
const { viewport, segmentation, segmentationId } = args;
|
|
92
|
+
if (!canRenderVolumeViewportLabelmapAsImage(viewport)) {
|
|
93
|
+
return;
|
|
94
|
+
}
|
|
95
|
+
if (isPlanarSliceRenderingViewport(viewport)) {
|
|
96
|
+
await addPlanarLabelmapImageMapperActors({
|
|
97
|
+
viewport,
|
|
98
|
+
segmentation,
|
|
99
|
+
segmentationId,
|
|
100
|
+
});
|
|
101
|
+
return;
|
|
102
|
+
}
|
|
103
|
+
getLabelmaps(segmentation).forEach((layer) => {
|
|
104
|
+
const volume = getOrCreateLabelmapVolume(layer);
|
|
105
|
+
if (!volume) {
|
|
106
|
+
return;
|
|
107
|
+
}
|
|
108
|
+
const sliceData = createSliceImageData(volume, viewport);
|
|
109
|
+
if (!sliceData) {
|
|
110
|
+
return;
|
|
111
|
+
}
|
|
112
|
+
const representationUID = createLabelmapRepresentationUID({
|
|
113
|
+
segmentationId,
|
|
114
|
+
referencedId: layer.labelmapId,
|
|
115
|
+
sliceStateKey: sliceData.state.key,
|
|
116
|
+
});
|
|
117
|
+
const actorEntry = createActorEntry({
|
|
118
|
+
imageData: sliceData.imageData,
|
|
119
|
+
referencedId: layer.labelmapId,
|
|
120
|
+
representationUID,
|
|
121
|
+
});
|
|
122
|
+
viewport.addActor(actorEntry);
|
|
123
|
+
moveActorToOverlayRenderer(viewport, actorEntry);
|
|
124
|
+
});
|
|
125
|
+
}
|
|
126
|
+
export function updateVolumeLabelmapImageMapperActors(args) {
|
|
127
|
+
const { viewport, segmentation, segmentationId, actorEntries } = args;
|
|
128
|
+
if (!canRenderVolumeViewportLabelmapAsImage(viewport)) {
|
|
129
|
+
return;
|
|
130
|
+
}
|
|
131
|
+
if (isPlanarSliceRenderingViewport(viewport)) {
|
|
132
|
+
updatePlanarLabelmapImageMapperActors({
|
|
133
|
+
viewport,
|
|
134
|
+
segmentation,
|
|
135
|
+
segmentationId,
|
|
136
|
+
actorEntries,
|
|
137
|
+
});
|
|
138
|
+
return;
|
|
139
|
+
}
|
|
140
|
+
const actorEntriesByLabelmapId = new Map((actorEntries ?? viewport.getActors())
|
|
141
|
+
.filter((actorEntry) => isLabelmapRepresentationUID(actorEntry.representationUID, segmentationId))
|
|
142
|
+
.map((actorEntry) => [actorEntry.referencedId, actorEntry]));
|
|
143
|
+
getLabelmaps(segmentation).forEach((layer) => {
|
|
144
|
+
const actorEntry = actorEntriesByLabelmapId.get(layer.labelmapId);
|
|
145
|
+
if (!actorEntry) {
|
|
146
|
+
return;
|
|
147
|
+
}
|
|
148
|
+
const volume = getOrCreateLabelmapVolume(layer);
|
|
149
|
+
if (!volume) {
|
|
150
|
+
return;
|
|
151
|
+
}
|
|
152
|
+
const sliceData = createSliceImageData(volume, viewport);
|
|
153
|
+
if (!sliceData) {
|
|
154
|
+
return;
|
|
155
|
+
}
|
|
156
|
+
const mapper = actorEntry.actor.getMapper();
|
|
157
|
+
mapper.setInputData(sliceData.imageData);
|
|
158
|
+
mapper.modified();
|
|
159
|
+
actorEntry.actor.modified?.();
|
|
160
|
+
});
|
|
161
|
+
}
|
|
162
|
+
export function removeVolumeLabelmapImageMapperActors(viewport, segmentationId) {
|
|
163
|
+
if (!(viewport.type === Enums.ViewportType.ORTHOGRAPHIC)) {
|
|
164
|
+
return;
|
|
165
|
+
}
|
|
166
|
+
if (!canRenderVolumeViewportLabelmapAsImage(viewport)) {
|
|
167
|
+
return;
|
|
168
|
+
}
|
|
169
|
+
const renderingEngine = viewport.getRenderingEngine();
|
|
170
|
+
const offscreenMultiRenderWindow = renderingEngine.getOffscreenMultiRenderWindow(viewport.id);
|
|
171
|
+
const overlayRenderer = offscreenMultiRenderWindow.getRenderer(getOverlayRendererId(viewport.id));
|
|
172
|
+
if (!overlayRenderer) {
|
|
173
|
+
return;
|
|
174
|
+
}
|
|
175
|
+
viewport
|
|
176
|
+
.getActors()
|
|
177
|
+
.filter((actorEntry) => isLabelmapRepresentationUID(actorEntry.representationUID, segmentationId))
|
|
178
|
+
.forEach((actorEntry) => {
|
|
179
|
+
overlayRenderer.removeActor(actorEntry.actor);
|
|
180
|
+
});
|
|
181
|
+
if (!overlayRenderer.getActors().length) {
|
|
182
|
+
offscreenMultiRenderWindow.removeRenderer(getOverlayRendererId(viewport.id));
|
|
183
|
+
}
|
|
184
|
+
}
|
|
185
|
+
export function getLabelmapForActorReference(segmentation, referencedId) {
|
|
186
|
+
if (!referencedId) {
|
|
187
|
+
return;
|
|
188
|
+
}
|
|
189
|
+
return (getLabelmap(segmentation, referencedId) ??
|
|
190
|
+
getLabelmapForImageId(segmentation, referencedId) ??
|
|
191
|
+
getLabelmapForVolumeId(segmentation, referencedId) ??
|
|
192
|
+
getLabelmaps(segmentation).find((layer) => layer.volumeId === referencedId));
|
|
193
|
+
}
|
|
194
|
+
async function addPlanarLabelmapImageMapperActors(args) {
|
|
195
|
+
const { viewport, segmentation, segmentationId } = args;
|
|
196
|
+
for (const [index, layer] of getLabelmaps(segmentation).entries()) {
|
|
197
|
+
const volume = getOrCreateLabelmapVolume(layer);
|
|
198
|
+
if (!volume) {
|
|
199
|
+
continue;
|
|
200
|
+
}
|
|
201
|
+
const sliceData = createSliceImageData(volume, viewport);
|
|
202
|
+
if (!sliceData) {
|
|
203
|
+
continue;
|
|
204
|
+
}
|
|
205
|
+
const currentImageId = viewport.getCurrentImageId() ??
|
|
206
|
+
volume.imageIds[Math.min(Math.max(sliceData.state.sliceIndex, 0), Math.max(volume.imageIds.length - 1, 0))];
|
|
207
|
+
if (!currentImageId) {
|
|
208
|
+
continue;
|
|
209
|
+
}
|
|
210
|
+
const representationUID = createLabelmapRepresentationUID({
|
|
211
|
+
segmentationId,
|
|
212
|
+
referencedId: layer.labelmapId,
|
|
213
|
+
});
|
|
214
|
+
await viewport.addImages([
|
|
215
|
+
{
|
|
216
|
+
dataId: representationUID,
|
|
217
|
+
imageId: currentImageId,
|
|
218
|
+
imageData: sliceData.imageData,
|
|
219
|
+
reference: {
|
|
220
|
+
kind: 'segmentation',
|
|
221
|
+
segmentationId,
|
|
222
|
+
representationUID,
|
|
223
|
+
labelmapId: layer.labelmapId,
|
|
224
|
+
},
|
|
225
|
+
useWorldCoordinateImageData: true,
|
|
226
|
+
callback: ({ imageActor }) => {
|
|
227
|
+
const mapper = imageActor.getMapper();
|
|
228
|
+
const camera = getSliceRenderingCamera(viewport);
|
|
229
|
+
mapper.setInputData(sliceData.imageData);
|
|
230
|
+
mapper.modified();
|
|
231
|
+
if (camera) {
|
|
232
|
+
applyPlanarOverlayDepthOffset(imageActor, camera.viewPlaneNormal, index + 1);
|
|
233
|
+
}
|
|
234
|
+
},
|
|
235
|
+
},
|
|
236
|
+
]);
|
|
237
|
+
}
|
|
238
|
+
viewport.render();
|
|
239
|
+
}
|
|
240
|
+
function updatePlanarLabelmapImageMapperActors(args) {
|
|
241
|
+
const { viewport, segmentation, segmentationId, actorEntries } = args;
|
|
242
|
+
const actorEntriesByLabelmapId = new Map((actorEntries ?? viewport.getActors())
|
|
243
|
+
.filter((actorEntry) => isLabelmapRepresentationUID(actorEntry.representationUID, segmentationId))
|
|
244
|
+
.map((actorEntry) => [actorEntry.referencedId, actorEntry]));
|
|
245
|
+
getLabelmaps(segmentation).forEach((layer, index) => {
|
|
246
|
+
const actorEntry = actorEntriesByLabelmapId.get(layer.labelmapId);
|
|
247
|
+
if (!actorEntry) {
|
|
248
|
+
return;
|
|
249
|
+
}
|
|
250
|
+
const volume = getOrCreateLabelmapVolume(layer);
|
|
251
|
+
if (!volume) {
|
|
252
|
+
return;
|
|
253
|
+
}
|
|
254
|
+
const sliceData = createSliceImageData(volume, viewport);
|
|
255
|
+
if (!sliceData) {
|
|
256
|
+
return;
|
|
257
|
+
}
|
|
258
|
+
const mapper = actorEntry.actor.getMapper();
|
|
259
|
+
mapper.setInputData(sliceData.imageData);
|
|
260
|
+
mapper.modified();
|
|
261
|
+
const camera = getSliceRenderingCamera(viewport);
|
|
262
|
+
if (camera) {
|
|
263
|
+
applyPlanarOverlayDepthOffset(actorEntry.actor, camera.viewPlaneNormal, index + 1);
|
|
264
|
+
}
|
|
265
|
+
actorEntry.actor.modified?.();
|
|
266
|
+
});
|
|
267
|
+
}
|
|
@@ -0,0 +1,27 @@
|
|
|
1
|
+
import vtkImageData from '@kitware/vtk.js/Common/DataModel/ImageData';
|
|
2
|
+
import vtkImageSlice from '@kitware/vtk.js/Rendering/Core/ImageSlice';
|
|
3
|
+
import { type Types } from '@cornerstonejs/core';
|
|
4
|
+
type ImageMapperSliceState = {
|
|
5
|
+
key: string;
|
|
6
|
+
xAxis: number;
|
|
7
|
+
xSign: 1 | -1;
|
|
8
|
+
yAxis: number;
|
|
9
|
+
ySign: 1 | -1;
|
|
10
|
+
sliceAxis: number;
|
|
11
|
+
sliceIndex: number;
|
|
12
|
+
};
|
|
13
|
+
type SliceRenderingViewport = Types.IViewport & {
|
|
14
|
+
getCamera?: () => Pick<Types.ICamera, 'focalPoint' | 'viewPlaneNormal' | 'viewUp'>;
|
|
15
|
+
getResolvedView?: () => {
|
|
16
|
+
toICamera?: () => Pick<Types.ICamera, 'focalPoint' | 'viewPlaneNormal' | 'viewUp'>;
|
|
17
|
+
} | undefined;
|
|
18
|
+
};
|
|
19
|
+
declare function applyPlanarOverlayDepthOffset(actor: vtkImageSlice, viewPlaneNormal: Types.Point3, overlayOrder: number): void;
|
|
20
|
+
declare function getSliceRenderingCamera(viewport: SliceRenderingViewport): Pick<Types.ICamera, 'focalPoint' | 'viewPlaneNormal' | 'viewUp'> | undefined;
|
|
21
|
+
declare function getSliceState(viewport: SliceRenderingViewport, volume: Types.IImageVolume): ImageMapperSliceState | undefined;
|
|
22
|
+
declare function createSliceImageData(volume: Types.IImageVolume, viewport: SliceRenderingViewport): {
|
|
23
|
+
imageData: vtkImageData;
|
|
24
|
+
state: ImageMapperSliceState;
|
|
25
|
+
} | undefined;
|
|
26
|
+
export { applyPlanarOverlayDepthOffset, createSliceImageData, getSliceRenderingCamera, getSliceState, };
|
|
27
|
+
export type { ImageMapperSliceState, SliceRenderingViewport };
|
|
@@ -0,0 +1,185 @@
|
|
|
1
|
+
import vtkDataArray from '@kitware/vtk.js/Common/Core/DataArray';
|
|
2
|
+
import vtkImageData from '@kitware/vtk.js/Common/DataModel/ImageData';
|
|
3
|
+
import vtkImageSlice from '@kitware/vtk.js/Rendering/Core/ImageSlice';
|
|
4
|
+
import { utilities } from '@cornerstonejs/core';
|
|
5
|
+
import { vec3 } from 'gl-matrix';
|
|
6
|
+
import { DIRECTION_ALIGNMENT_TOLERANCE } from '../../../stateManagement/segmentation/helpers/labelmapImageMapperSupport';
|
|
7
|
+
const PLANAR_OVERLAY_DEPTH_EPSILON = 1e-4;
|
|
8
|
+
function applyPlanarOverlayDepthOffset(actor, viewPlaneNormal, overlayOrder) {
|
|
9
|
+
if (overlayOrder <= 0) {
|
|
10
|
+
actor.setPosition(0, 0, 0);
|
|
11
|
+
return;
|
|
12
|
+
}
|
|
13
|
+
const [x, y, z] = vec3.normalize(vec3.create(), viewPlaneNormal);
|
|
14
|
+
const offset = overlayOrder * PLANAR_OVERLAY_DEPTH_EPSILON;
|
|
15
|
+
actor.setPosition(x * offset, y * offset, z * offset);
|
|
16
|
+
}
|
|
17
|
+
function matchAxis(vector, axes) {
|
|
18
|
+
let bestAxis = -1;
|
|
19
|
+
let bestDot = 0;
|
|
20
|
+
axes.forEach((axisVector, axis) => {
|
|
21
|
+
const dot = vec3.dot(vector, axisVector);
|
|
22
|
+
if (Math.abs(dot) > Math.abs(bestDot)) {
|
|
23
|
+
bestAxis = axis;
|
|
24
|
+
bestDot = dot;
|
|
25
|
+
}
|
|
26
|
+
});
|
|
27
|
+
if (bestAxis === -1 || Math.abs(bestDot) < DIRECTION_ALIGNMENT_TOLERANCE) {
|
|
28
|
+
return;
|
|
29
|
+
}
|
|
30
|
+
return {
|
|
31
|
+
axis: bestAxis,
|
|
32
|
+
sign: bestDot >= 0 ? 1 : -1,
|
|
33
|
+
};
|
|
34
|
+
}
|
|
35
|
+
function getSliceRenderingCamera(viewport) {
|
|
36
|
+
const resolvedCamera = viewport.getResolvedView?.()?.toICamera?.();
|
|
37
|
+
const normalizedResolvedCamera = normalizeSliceRenderingCamera(resolvedCamera);
|
|
38
|
+
if (normalizedResolvedCamera) {
|
|
39
|
+
return normalizedResolvedCamera;
|
|
40
|
+
}
|
|
41
|
+
const legacyCamera = viewport.getCamera?.();
|
|
42
|
+
const normalizedLegacyCamera = normalizeSliceRenderingCamera(legacyCamera);
|
|
43
|
+
return normalizedLegacyCamera;
|
|
44
|
+
}
|
|
45
|
+
function normalizeSliceRenderingCamera(camera) {
|
|
46
|
+
const candidate = camera;
|
|
47
|
+
const focalPoint = toPoint3(candidate?.focalPoint);
|
|
48
|
+
const viewPlaneNormal = toPoint3(candidate?.viewPlaneNormal);
|
|
49
|
+
const viewUp = toPoint3(candidate?.viewUp);
|
|
50
|
+
if (!focalPoint || !viewPlaneNormal || !viewUp) {
|
|
51
|
+
return;
|
|
52
|
+
}
|
|
53
|
+
return {
|
|
54
|
+
focalPoint,
|
|
55
|
+
viewPlaneNormal,
|
|
56
|
+
viewUp,
|
|
57
|
+
};
|
|
58
|
+
}
|
|
59
|
+
function toPoint3(value) {
|
|
60
|
+
const candidate = value;
|
|
61
|
+
if (!candidate || typeof candidate.length !== 'number') {
|
|
62
|
+
return;
|
|
63
|
+
}
|
|
64
|
+
if (candidate.length < 3) {
|
|
65
|
+
return;
|
|
66
|
+
}
|
|
67
|
+
const point = [
|
|
68
|
+
Number(candidate[0]),
|
|
69
|
+
Number(candidate[1]),
|
|
70
|
+
Number(candidate[2]),
|
|
71
|
+
];
|
|
72
|
+
return point.every(Number.isFinite) ? point : undefined;
|
|
73
|
+
}
|
|
74
|
+
function getVolumeAxes(volume) {
|
|
75
|
+
const { direction } = volume;
|
|
76
|
+
return [
|
|
77
|
+
[direction[0], direction[1], direction[2]],
|
|
78
|
+
[direction[3], direction[4], direction[5]],
|
|
79
|
+
[direction[6], direction[7], direction[8]],
|
|
80
|
+
];
|
|
81
|
+
}
|
|
82
|
+
function getSliceState(viewport, volume) {
|
|
83
|
+
const camera = getSliceRenderingCamera(viewport);
|
|
84
|
+
if (!camera) {
|
|
85
|
+
return;
|
|
86
|
+
}
|
|
87
|
+
const { viewPlaneNormal, viewUp, focalPoint } = camera;
|
|
88
|
+
const xDirection = vec3.normalize(vec3.create(), vec3.cross(vec3.create(), viewPlaneNormal, viewUp));
|
|
89
|
+
const yDirection = vec3.normalize(vec3.create(), viewUp);
|
|
90
|
+
const axes = getVolumeAxes(volume);
|
|
91
|
+
const xAxis = matchAxis(xDirection, axes);
|
|
92
|
+
const yAxis = matchAxis(yDirection, axes);
|
|
93
|
+
const sliceAxis = matchAxis(viewPlaneNormal, axes);
|
|
94
|
+
if (!xAxis || !yAxis || !sliceAxis) {
|
|
95
|
+
return;
|
|
96
|
+
}
|
|
97
|
+
const distinctAxes = new Set([xAxis.axis, yAxis.axis, sliceAxis.axis]);
|
|
98
|
+
if (distinctAxes.size !== 3) {
|
|
99
|
+
return;
|
|
100
|
+
}
|
|
101
|
+
const continuousIndex = utilities.transformWorldToIndexContinuous(volume.imageData, focalPoint);
|
|
102
|
+
const sliceIndex = Math.floor(continuousIndex[sliceAxis.axis] + 0.5 - 1e-6);
|
|
103
|
+
if (sliceIndex < 0 || sliceIndex >= volume.dimensions[sliceAxis.axis]) {
|
|
104
|
+
return;
|
|
105
|
+
}
|
|
106
|
+
return {
|
|
107
|
+
key: [
|
|
108
|
+
sliceAxis.axis,
|
|
109
|
+
sliceIndex,
|
|
110
|
+
xAxis.axis,
|
|
111
|
+
xAxis.sign,
|
|
112
|
+
yAxis.axis,
|
|
113
|
+
yAxis.sign,
|
|
114
|
+
].join(':'),
|
|
115
|
+
xAxis: xAxis.axis,
|
|
116
|
+
xSign: xAxis.sign,
|
|
117
|
+
yAxis: yAxis.axis,
|
|
118
|
+
ySign: yAxis.sign,
|
|
119
|
+
sliceAxis: sliceAxis.axis,
|
|
120
|
+
sliceIndex,
|
|
121
|
+
};
|
|
122
|
+
}
|
|
123
|
+
function createSliceImageData(volume, viewport) {
|
|
124
|
+
const state = getSliceState(viewport, volume);
|
|
125
|
+
if (!state) {
|
|
126
|
+
return;
|
|
127
|
+
}
|
|
128
|
+
const axisVectors = getVolumeAxes(volume);
|
|
129
|
+
const { dimensions, spacing, voxelManager } = volume;
|
|
130
|
+
const width = dimensions[state.xAxis];
|
|
131
|
+
const height = dimensions[state.yAxis];
|
|
132
|
+
const SliceDataConstructor = voxelManager.getConstructor();
|
|
133
|
+
const pixelData = new SliceDataConstructor(width * height);
|
|
134
|
+
const ijk = [0, 0, 0];
|
|
135
|
+
ijk[state.sliceAxis] = state.sliceIndex;
|
|
136
|
+
const xStart = state.xSign > 0 ? 0 : width - 1;
|
|
137
|
+
const xStep = state.xSign > 0 ? 1 : -1;
|
|
138
|
+
const yStart = state.ySign > 0 ? 0 : height - 1;
|
|
139
|
+
const yStep = state.ySign > 0 ? 1 : -1;
|
|
140
|
+
for (let y = 0, srcY = yStart; y < height; y++, srcY += yStep) {
|
|
141
|
+
ijk[state.yAxis] = srcY;
|
|
142
|
+
const rowOffset = y * width;
|
|
143
|
+
for (let x = 0, srcX = xStart; x < width; x++, srcX += xStep) {
|
|
144
|
+
ijk[state.xAxis] = srcX;
|
|
145
|
+
pixelData[rowOffset + x] = Number(voxelManager.getAtIJK(ijk[0], ijk[1], ijk[2]));
|
|
146
|
+
}
|
|
147
|
+
}
|
|
148
|
+
const originIndex = [0, 0, 0];
|
|
149
|
+
originIndex[state.sliceAxis] = state.sliceIndex;
|
|
150
|
+
originIndex[state.xAxis] = state.xSign > 0 ? 0 : width - 1;
|
|
151
|
+
originIndex[state.yAxis] = state.ySign > 0 ? 0 : height - 1;
|
|
152
|
+
const xDirection = axisVectors[state.xAxis].map((value) => value * state.xSign);
|
|
153
|
+
const yDirection = axisVectors[state.yAxis].map((value) => value * state.ySign);
|
|
154
|
+
const camera = getSliceRenderingCamera(viewport);
|
|
155
|
+
if (!camera) {
|
|
156
|
+
return;
|
|
157
|
+
}
|
|
158
|
+
const zDirection = vec3.normalize(vec3.create(), camera.viewPlaneNormal);
|
|
159
|
+
const dataType = vtkDataArray.getDataType(pixelData);
|
|
160
|
+
const scalarArray = vtkDataArray.newInstance({
|
|
161
|
+
dataType,
|
|
162
|
+
name: 'Pixels',
|
|
163
|
+
numberOfComponents: 1,
|
|
164
|
+
values: pixelData,
|
|
165
|
+
});
|
|
166
|
+
const imageData = vtkImageData.newInstance();
|
|
167
|
+
imageData.set({ dataType, numberOfComponents: 1 }, true);
|
|
168
|
+
imageData.setDimensions(width, height, 1);
|
|
169
|
+
imageData.setSpacing([spacing[state.xAxis], spacing[state.yAxis], 1]);
|
|
170
|
+
imageData.setDirection(new Float32Array([
|
|
171
|
+
...xDirection,
|
|
172
|
+
...yDirection,
|
|
173
|
+
zDirection[0],
|
|
174
|
+
zDirection[1],
|
|
175
|
+
zDirection[2],
|
|
176
|
+
]));
|
|
177
|
+
imageData.setOrigin(utilities.transformIndexToWorld(volume.imageData, originIndex));
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178
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+
imageData.getPointData().setScalars(scalarArray);
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179
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+
imageData.modified();
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180
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+
return {
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181
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+
imageData,
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182
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+
state,
|
|
183
|
+
};
|
|
184
|
+
}
|
|
185
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+
export { applyPlanarOverlayDepthOffset, createSliceImageData, getSliceRenderingCamera, getSliceState, };
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|
@@ -0,0 +1 @@
|
|
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1
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+
export declare function registerBuiltInSegmentationRepresentationDisplays(): void;
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|
@@ -0,0 +1,16 @@
|
|
|
1
|
+
import SegmentationRepresentations from '../../enums/SegmentationRepresentations';
|
|
2
|
+
import { registerSegmentationRepresentationDisplay, } from '../../stateManagement/segmentation/SegmentationRepresentationDisplayRegistry';
|
|
3
|
+
import contourDisplay from './Contour/contourDisplay';
|
|
4
|
+
import labelmapDisplay from './Labelmap/labelmapDisplay';
|
|
5
|
+
import surfaceDisplay from './Surface/surfaceDisplay';
|
|
6
|
+
let builtInDisplaysRegistered = false;
|
|
7
|
+
export function registerBuiltInSegmentationRepresentationDisplays() {
|
|
8
|
+
if (builtInDisplaysRegistered) {
|
|
9
|
+
return;
|
|
10
|
+
}
|
|
11
|
+
registerSegmentationRepresentationDisplay(SegmentationRepresentations.Labelmap, labelmapDisplay);
|
|
12
|
+
registerSegmentationRepresentationDisplay(SegmentationRepresentations.Contour, contourDisplay);
|
|
13
|
+
registerSegmentationRepresentationDisplay(SegmentationRepresentations.Surface, surfaceDisplay);
|
|
14
|
+
builtInDisplaysRegistered = true;
|
|
15
|
+
}
|
|
16
|
+
registerBuiltInSegmentationRepresentationDisplays();
|
|
@@ -55,9 +55,10 @@ import CircleROIStartEndThresholdTool from './segmentation/CircleROIStartEndThre
|
|
|
55
55
|
import BrushTool from './segmentation/BrushTool';
|
|
56
56
|
import PaintFillTool from './segmentation/PaintFillTool';
|
|
57
57
|
import OrientationMarkerTool from './OrientationMarkerTool';
|
|
58
|
+
import OrientationControllerTool from './OrientationControllerTool';
|
|
58
59
|
import SegmentSelectTool from './segmentation/SegmentSelectTool';
|
|
59
60
|
import SegmentBidirectionalTool from './segmentation/SegmentBidirectionalTool';
|
|
60
61
|
import * as strategies from './segmentation/strategies';
|
|
61
62
|
import SegmentLabelTool from './segmentation/SegmentLabelTool';
|
|
62
63
|
import LabelMapEditWithContourTool from './segmentation/LabelmapEditWithContour';
|
|
63
|
-
export { BaseTool, AnnotationTool, AnnotationDisplayTool, PanTool, TrackballRotateTool, VolumeCroppingTool, VolumeCroppingControlTool, DragProbeTool, WindowLevelTool, WindowLevelRegionTool, StackScrollTool, PlanarRotateTool, ZoomTool, MIPJumpToClickTool, ReferenceCursors, CrosshairsTool, ReferenceLinesTool, OverlayGridTool, SegmentationIntersectionTool, BidirectionalTool, LabelTool, LengthTool, HeightTool, ProbeTool, RectangleROITool, EllipticalROITool, CircleROITool, ETDRSGridTool, SplineROITool, PlanarFreehandROITool, PlanarFreehandContourSegmentationTool, LivewireContourTool, LivewireContourSegmentationTool, ArrowAnnotateTool, AngleTool, CobbAngleTool, UltrasoundDirectionalTool, UltrasoundPleuraBLineTool, KeyImageTool, AnnotationEraserTool as EraserTool, RectangleScissorsTool, CircleScissorsTool, SphereScissorsTool, RectangleROIThresholdTool, RectangleROIStartEndThresholdTool, CircleROIStartEndThresholdTool, SplineContourSegmentationTool, BrushTool, MagnifyTool, AdvancedMagnifyTool, PaintFillTool, ScaleOverlayTool, OrientationMarkerTool, SculptorTool, SegmentSelectTool, VolumeRotateTool, RegionSegmentTool, RegionSegmentPlusTool, WholeBodySegmentTool, LabelmapBaseTool, SegmentBidirectionalTool, SegmentLabelTool, LabelMapEditWithContourTool, strategies, };
|
|
64
|
+
export { BaseTool, AnnotationTool, AnnotationDisplayTool, PanTool, TrackballRotateTool, VolumeCroppingTool, VolumeCroppingControlTool, DragProbeTool, WindowLevelTool, WindowLevelRegionTool, StackScrollTool, PlanarRotateTool, ZoomTool, MIPJumpToClickTool, ReferenceCursors, CrosshairsTool, ReferenceLinesTool, OverlayGridTool, SegmentationIntersectionTool, BidirectionalTool, LabelTool, LengthTool, HeightTool, ProbeTool, RectangleROITool, EllipticalROITool, CircleROITool, ETDRSGridTool, SplineROITool, PlanarFreehandROITool, PlanarFreehandContourSegmentationTool, LivewireContourTool, LivewireContourSegmentationTool, ArrowAnnotateTool, AngleTool, CobbAngleTool, UltrasoundDirectionalTool, UltrasoundPleuraBLineTool, KeyImageTool, AnnotationEraserTool as EraserTool, RectangleScissorsTool, CircleScissorsTool, SphereScissorsTool, RectangleROIThresholdTool, RectangleROIStartEndThresholdTool, CircleROIStartEndThresholdTool, SplineContourSegmentationTool, BrushTool, MagnifyTool, AdvancedMagnifyTool, PaintFillTool, ScaleOverlayTool, OrientationMarkerTool, OrientationControllerTool, SculptorTool, SegmentSelectTool, VolumeRotateTool, RegionSegmentTool, RegionSegmentPlusTool, WholeBodySegmentTool, LabelmapBaseTool, SegmentBidirectionalTool, SegmentLabelTool, LabelMapEditWithContourTool, strategies, };
|