@cornerstonejs/tools 3.5.3 → 3.6.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/esm/config.d.ts +7 -0
- package/dist/esm/enums/WorkerTypes.d.ts +2 -1
- package/dist/esm/enums/WorkerTypes.js +1 -0
- package/dist/esm/index.d.ts +2 -2
- package/dist/esm/index.js +2 -2
- package/dist/esm/tools/annotation/BidirectionalTool.d.ts +3 -0
- package/dist/esm/tools/annotation/BidirectionalTool.js +39 -1
- package/dist/esm/tools/index.d.ts +2 -1
- package/dist/esm/tools/index.js +2 -1
- package/dist/esm/tools/segmentation/SegmentBidirectionalTool.d.ts +27 -0
- package/dist/esm/tools/segmentation/SegmentBidirectionalTool.js +253 -0
- package/dist/esm/tools/segmentation/strategies/utils/getStrategyData.js +5 -10
- package/dist/esm/types/CalculatorTypes.d.ts +15 -3
- package/dist/esm/types/ToolSpecificAnnotationTypes.d.ts +34 -0
- package/dist/esm/utilities/contours/generateContourSetsFromLabelmap.js +1 -0
- package/dist/esm/utilities/math/basic/BasicStatsCalculator.js +68 -5
- package/dist/esm/utilities/registerComputeWorker.js +4 -1
- package/dist/esm/utilities/segmentation/VolumetricCalculator.js +1 -0
- package/dist/esm/utilities/segmentation/contourAndFindLargestBidirectional.js +7 -5
- package/dist/esm/utilities/segmentation/findLargestBidirectional.d.ts +5 -0
- package/dist/esm/utilities/segmentation/findLargestBidirectional.js +1 -1
- package/dist/esm/utilities/segmentation/getOrCreateSegmentationVolume.js +5 -1
- package/dist/esm/utilities/segmentation/getReferenceVolumeForSegmentationVolume.d.ts +1 -0
- package/dist/esm/utilities/segmentation/getReferenceVolumeForSegmentationVolume.js +20 -0
- package/dist/esm/utilities/segmentation/getSegmentLargestBidirectional.d.ts +5 -0
- package/dist/esm/utilities/segmentation/getSegmentLargestBidirectional.js +54 -0
- package/dist/esm/utilities/segmentation/getStatistics.js +42 -107
- package/dist/esm/utilities/segmentation/index.d.ts +3 -1
- package/dist/esm/utilities/segmentation/index.js +3 -1
- package/dist/esm/utilities/segmentation/isLineInSegment.d.ts +13 -1
- package/dist/esm/utilities/segmentation/isLineInSegment.js +20 -12
- package/dist/esm/utilities/segmentation/segmentContourAction.js +1 -0
- package/dist/esm/utilities/segmentation/utilsForWorker.d.ts +38 -0
- package/dist/esm/utilities/segmentation/utilsForWorker.js +125 -0
- package/dist/esm/workers/computeWorker.js +284 -40
- package/package.json +3 -3
package/dist/esm/config.d.ts
CHANGED
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@@ -20,8 +20,15 @@ type PolySegAddOn = {
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type AddOns = {
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polySeg: PolySegAddOn;
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};
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type ComputeWorkerConfig = {
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autoTerminateOnIdle?: {
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enabled: boolean;
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idleTimeThreshold?: number;
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};
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};
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export type Config = {
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addons: AddOns;
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computeWorker?: ComputeWorkerConfig;
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};
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export declare function getConfig(): Config;
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export declare function setConfig(newConfig: Config): void;
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@@ -5,6 +5,7 @@ declare enum ChangeTypes {
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POLYSEG_LABELMAP_TO_SURFACE = "Converting Labelmap to Surface",
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SURFACE_CLIPPING = "Clipping Surfaces",
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COMPUTE_STATISTICS = "Computing Statistics",
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-
INTERPOLATE_LABELMAP = "Interpolating Labelmap"
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INTERPOLATE_LABELMAP = "Interpolating Labelmap",
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COMPUTE_LARGEST_BIDIRECTIONAL = "Computing Largest Bidirectional"
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}
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export default ChangeTypes;
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@@ -7,5 +7,6 @@ var ChangeTypes;
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ChangeTypes["SURFACE_CLIPPING"] = "Clipping Surfaces";
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ChangeTypes["COMPUTE_STATISTICS"] = "Computing Statistics";
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ChangeTypes["INTERPOLATE_LABELMAP"] = "Interpolating Labelmap";
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ChangeTypes["COMPUTE_LARGEST_BIDIRECTIONAL"] = "Computing Largest Bidirectional";
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})(ChangeTypes || (ChangeTypes = {}));
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export default ChangeTypes;
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package/dist/esm/index.d.ts
CHANGED
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@@ -11,7 +11,7 @@ import * as Types from './types';
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import * as annotation from './stateManagement/annotation';
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import * as segmentation from './stateManagement/segmentation';
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import * as splines from './tools/annotation/splines';
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-
import { BaseTool, AnnotationTool, AnnotationDisplayTool, PanTool, TrackballRotateTool, DragProbeTool, WindowLevelTool, ZoomTool, StackScrollTool, PlanarRotateTool, MIPJumpToClickTool, LabelTool, LengthTool, HeightTool, ProbeTool, RectangleROITool, EllipticalROITool, CircleROITool, ETDRSGridTool, SplineROITool, SplineContourSegmentationTool, BidirectionalTool, PlanarFreehandROITool, PlanarFreehandContourSegmentationTool, LivewireContourTool, LivewireContourSegmentationTool, ArrowAnnotateTool, KeyImageTool, CrosshairsTool, ReferenceLinesTool, RectangleScissorsTool, CircleScissorsTool, SphereScissorsTool, RectangleROIThresholdTool, RectangleROIStartEndThresholdTool, CircleROIStartEndThresholdTool, BrushTool, AngleTool, CobbAngleTool, UltrasoundDirectionalTool, MagnifyTool, AdvancedMagnifyTool, ReferenceCursors, PaintFillTool, ScaleOverlayTool, OrientationMarkerTool, OverlayGridTool, SegmentationIntersectionTool, EraserTool, SculptorTool, SegmentSelectTool, WindowLevelRegionTool, VolumeRotateTool, RegionSegmentPlusTool, RegionSegmentTool, WholeBodySegmentTool, LabelmapBaseTool } from './tools';
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import { BaseTool, AnnotationTool, AnnotationDisplayTool, PanTool, TrackballRotateTool, DragProbeTool, WindowLevelTool, ZoomTool, StackScrollTool, SegmentBidirectionalTool, PlanarRotateTool, MIPJumpToClickTool, LabelTool, LengthTool, HeightTool, ProbeTool, RectangleROITool, EllipticalROITool, CircleROITool, ETDRSGridTool, SplineROITool, SplineContourSegmentationTool, BidirectionalTool, PlanarFreehandROITool, PlanarFreehandContourSegmentationTool, LivewireContourTool, LivewireContourSegmentationTool, ArrowAnnotateTool, KeyImageTool, CrosshairsTool, ReferenceLinesTool, RectangleScissorsTool, CircleScissorsTool, SphereScissorsTool, RectangleROIThresholdTool, RectangleROIStartEndThresholdTool, CircleROIStartEndThresholdTool, BrushTool, AngleTool, CobbAngleTool, UltrasoundDirectionalTool, MagnifyTool, AdvancedMagnifyTool, ReferenceCursors, PaintFillTool, ScaleOverlayTool, OrientationMarkerTool, OverlayGridTool, SegmentationIntersectionTool, EraserTool, SculptorTool, SegmentSelectTool, WindowLevelRegionTool, VolumeRotateTool, RegionSegmentPlusTool, RegionSegmentTool, WholeBodySegmentTool, LabelmapBaseTool } from './tools';
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import VideoRedactionTool from './tools/annotation/VideoRedactionTool';
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import * as Enums from './enums';
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export { VideoRedactionTool, init, destroy, addTool, removeTool, cancelActiveManipulations, BaseTool, AnnotationTool, AnnotationDisplayTool, PanTool, TrackballRotateTool, DragProbeTool, WindowLevelTool, WindowLevelRegionTool, ZoomTool, StackScrollTool, PlanarRotateTool, MIPJumpToClickTool, LabelTool, LengthTool, HeightTool, CrosshairsTool, ReferenceLinesTool, OverlayGridTool, SegmentationIntersectionTool, ProbeTool, RectangleROITool, EllipticalROITool, CircleROITool, ETDRSGridTool, SplineROITool, SplineContourSegmentationTool, BidirectionalTool, PlanarFreehandROITool, PlanarFreehandContourSegmentationTool, LivewireContourTool, LivewireContourSegmentationTool, ArrowAnnotateTool, AngleTool, CobbAngleTool, UltrasoundDirectionalTool, KeyImageTool, MagnifyTool, AdvancedMagnifyTool, ReferenceCursors, ScaleOverlayTool, SculptorTool, EraserTool, RectangleScissorsTool, CircleScissorsTool, SphereScissorsTool, RectangleROIThresholdTool, RectangleROIStartEndThresholdTool, CircleROIStartEndThresholdTool, BrushTool, OrientationMarkerTool, SegmentSelectTool, synchronizers, Synchronizer, SynchronizerManager, PaintFillTool, Types, state, ToolGroupManager, store, Enums, CONSTANTS, drawing, annotation, segmentation, utilities, cursors, VolumeRotateTool, RegionSegmentPlusTool, RegionSegmentTool, WholeBodySegmentTool, LabelmapBaseTool, splines, };
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export { VideoRedactionTool, init, destroy, addTool, removeTool, cancelActiveManipulations, BaseTool, AnnotationTool, AnnotationDisplayTool, PanTool, SegmentBidirectionalTool, TrackballRotateTool, DragProbeTool, WindowLevelTool, WindowLevelRegionTool, ZoomTool, StackScrollTool, PlanarRotateTool, MIPJumpToClickTool, LabelTool, LengthTool, HeightTool, CrosshairsTool, ReferenceLinesTool, OverlayGridTool, SegmentationIntersectionTool, ProbeTool, RectangleROITool, EllipticalROITool, CircleROITool, ETDRSGridTool, SplineROITool, SplineContourSegmentationTool, BidirectionalTool, PlanarFreehandROITool, PlanarFreehandContourSegmentationTool, LivewireContourTool, LivewireContourSegmentationTool, ArrowAnnotateTool, AngleTool, CobbAngleTool, UltrasoundDirectionalTool, KeyImageTool, MagnifyTool, AdvancedMagnifyTool, ReferenceCursors, ScaleOverlayTool, SculptorTool, EraserTool, RectangleScissorsTool, CircleScissorsTool, SphereScissorsTool, RectangleROIThresholdTool, RectangleROIStartEndThresholdTool, CircleROIStartEndThresholdTool, BrushTool, OrientationMarkerTool, SegmentSelectTool, synchronizers, Synchronizer, SynchronizerManager, PaintFillTool, Types, state, ToolGroupManager, store, Enums, CONSTANTS, drawing, annotation, segmentation, utilities, cursors, VolumeRotateTool, RegionSegmentPlusTool, RegionSegmentTool, WholeBodySegmentTool, LabelmapBaseTool, splines, };
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package/dist/esm/index.js
CHANGED
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@@ -11,7 +11,7 @@ import * as Types from './types';
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import * as annotation from './stateManagement/annotation';
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import * as segmentation from './stateManagement/segmentation';
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import * as splines from './tools/annotation/splines';
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-
import { BaseTool, AnnotationTool, AnnotationDisplayTool, PanTool, TrackballRotateTool, DragProbeTool, WindowLevelTool, ZoomTool, StackScrollTool, PlanarRotateTool, MIPJumpToClickTool, LabelTool, LengthTool, HeightTool, ProbeTool, RectangleROITool, EllipticalROITool, CircleROITool, ETDRSGridTool, SplineROITool, SplineContourSegmentationTool, BidirectionalTool, PlanarFreehandROITool, PlanarFreehandContourSegmentationTool, LivewireContourTool, LivewireContourSegmentationTool, ArrowAnnotateTool, KeyImageTool, CrosshairsTool, ReferenceLinesTool, RectangleScissorsTool, CircleScissorsTool, SphereScissorsTool, RectangleROIThresholdTool, RectangleROIStartEndThresholdTool, CircleROIStartEndThresholdTool, BrushTool, AngleTool, CobbAngleTool, UltrasoundDirectionalTool, MagnifyTool, AdvancedMagnifyTool, ReferenceCursors, PaintFillTool, ScaleOverlayTool, OrientationMarkerTool, OverlayGridTool, SegmentationIntersectionTool, EraserTool, SculptorTool, SegmentSelectTool, WindowLevelRegionTool, VolumeRotateTool, RegionSegmentPlusTool, RegionSegmentTool, WholeBodySegmentTool, LabelmapBaseTool, } from './tools';
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import { BaseTool, AnnotationTool, AnnotationDisplayTool, PanTool, TrackballRotateTool, DragProbeTool, WindowLevelTool, ZoomTool, StackScrollTool, SegmentBidirectionalTool, PlanarRotateTool, MIPJumpToClickTool, LabelTool, LengthTool, HeightTool, ProbeTool, RectangleROITool, EllipticalROITool, CircleROITool, ETDRSGridTool, SplineROITool, SplineContourSegmentationTool, BidirectionalTool, PlanarFreehandROITool, PlanarFreehandContourSegmentationTool, LivewireContourTool, LivewireContourSegmentationTool, ArrowAnnotateTool, KeyImageTool, CrosshairsTool, ReferenceLinesTool, RectangleScissorsTool, CircleScissorsTool, SphereScissorsTool, RectangleROIThresholdTool, RectangleROIStartEndThresholdTool, CircleROIStartEndThresholdTool, BrushTool, AngleTool, CobbAngleTool, UltrasoundDirectionalTool, MagnifyTool, AdvancedMagnifyTool, ReferenceCursors, PaintFillTool, ScaleOverlayTool, OrientationMarkerTool, OverlayGridTool, SegmentationIntersectionTool, EraserTool, SculptorTool, SegmentSelectTool, WindowLevelRegionTool, VolumeRotateTool, RegionSegmentPlusTool, RegionSegmentTool, WholeBodySegmentTool, LabelmapBaseTool, } from './tools';
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import VideoRedactionTool from './tools/annotation/VideoRedactionTool';
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import * as Enums from './enums';
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export { VideoRedactionTool, init, destroy, addTool, removeTool, cancelActiveManipulations, BaseTool, AnnotationTool, AnnotationDisplayTool, PanTool, TrackballRotateTool, DragProbeTool, WindowLevelTool, WindowLevelRegionTool, ZoomTool, StackScrollTool, PlanarRotateTool, MIPJumpToClickTool, LabelTool, LengthTool, HeightTool, CrosshairsTool, ReferenceLinesTool, OverlayGridTool, SegmentationIntersectionTool, ProbeTool, RectangleROITool, EllipticalROITool, CircleROITool, ETDRSGridTool, SplineROITool, SplineContourSegmentationTool, BidirectionalTool, PlanarFreehandROITool, PlanarFreehandContourSegmentationTool, LivewireContourTool, LivewireContourSegmentationTool, ArrowAnnotateTool, AngleTool, CobbAngleTool, UltrasoundDirectionalTool, KeyImageTool, MagnifyTool, AdvancedMagnifyTool, ReferenceCursors, ScaleOverlayTool, SculptorTool, EraserTool, RectangleScissorsTool, CircleScissorsTool, SphereScissorsTool, RectangleROIThresholdTool, RectangleROIStartEndThresholdTool, CircleROIStartEndThresholdTool, BrushTool, OrientationMarkerTool, SegmentSelectTool, synchronizers, Synchronizer, SynchronizerManager, PaintFillTool, Types, state, ToolGroupManager, store, Enums, CONSTANTS, drawing, annotation, segmentation, utilities, cursors, VolumeRotateTool, RegionSegmentPlusTool, RegionSegmentTool, WholeBodySegmentTool, LabelmapBaseTool, splines, };
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export { VideoRedactionTool, init, destroy, addTool, removeTool, cancelActiveManipulations, BaseTool, AnnotationTool, AnnotationDisplayTool, PanTool, SegmentBidirectionalTool, TrackballRotateTool, DragProbeTool, WindowLevelTool, WindowLevelRegionTool, ZoomTool, StackScrollTool, PlanarRotateTool, MIPJumpToClickTool, LabelTool, LengthTool, HeightTool, CrosshairsTool, ReferenceLinesTool, OverlayGridTool, SegmentationIntersectionTool, ProbeTool, RectangleROITool, EllipticalROITool, CircleROITool, ETDRSGridTool, SplineROITool, SplineContourSegmentationTool, BidirectionalTool, PlanarFreehandROITool, PlanarFreehandContourSegmentationTool, LivewireContourTool, LivewireContourSegmentationTool, ArrowAnnotateTool, AngleTool, CobbAngleTool, UltrasoundDirectionalTool, KeyImageTool, MagnifyTool, AdvancedMagnifyTool, ReferenceCursors, ScaleOverlayTool, SculptorTool, EraserTool, RectangleScissorsTool, CircleScissorsTool, SphereScissorsTool, RectangleROIThresholdTool, RectangleROIStartEndThresholdTool, CircleROIStartEndThresholdTool, BrushTool, OrientationMarkerTool, SegmentSelectTool, synchronizers, Synchronizer, SynchronizerManager, PaintFillTool, Types, state, ToolGroupManager, store, Enums, CONSTANTS, drawing, annotation, segmentation, utilities, cursors, VolumeRotateTool, RegionSegmentPlusTool, RegionSegmentTool, WholeBodySegmentTool, LabelmapBaseTool, splines, };
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@@ -18,6 +18,9 @@ declare class BidirectionalTool extends AnnotationTool {
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preventHandleOutsideImage: boolean;
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constructor(toolProps?: PublicToolProps, defaultToolProps?: ToolProps);
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addNewAnnotation(evt: EventTypes.InteractionEventType): BidirectionalAnnotation;
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static hydrate: (viewportId: string, axis: [[Types.Point3, Types.Point3], [Types.Point3, Types.Point3]], options?: {
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annotationUID?: string;
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}) => BidirectionalAnnotation;
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isPointNearTool: (element: HTMLDivElement, annotation: BidirectionalAnnotation, canvasCoords: Types.Point2, proximity: number) => boolean;
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toolSelectedCallback: (evt: EventTypes.InteractionEventType, annotation: BidirectionalAnnotation) => void;
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handleSelectedCallback: (evt: EventTypes.InteractionEventType, annotation: BidirectionalAnnotation, handle: ToolHandle) => void;
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import { vec2, vec3 } from 'gl-matrix';
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import { getEnabledElement, utilities as csUtils } from '@cornerstonejs/core';
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import { getEnabledElement, utilities as csUtils, getEnabledElementByViewportId, utilities, } from '@cornerstonejs/core';
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import { getCalibratedLengthUnitsAndScale } from '../../utilities/getCalibratedUnits';
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import { AnnotationTool } from '../base';
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import throttle from '../../utilities/throttle';
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triggerAnnotationRenderForViewportIds(viewportIdsToRender);
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return annotation;
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}
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static { this.hydrate = (viewportId, axis, options) => {
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const enabledElement = getEnabledElementByViewportId(viewportId);
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if (!enabledElement) {
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return;
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}
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const { viewport } = enabledElement;
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const FrameOfReferenceUID = viewport.getFrameOfReferenceUID();
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const { viewPlaneNormal, viewUp } = viewport.getCamera();
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const instance = new this();
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const [majorAxis, minorAxis] = axis;
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const [major0, major1] = majorAxis;
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const [minor0, minor1] = minorAxis;
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const points = [major0, major1, minor0, minor1];
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const referencedImageId = instance.getReferencedImageId(viewport, points[0], viewPlaneNormal, viewUp);
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const annotation = {
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annotationUID: options?.annotationUID || utilities.uuidv4(),
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data: {
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handles: {
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points,
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activeHandleIndex: null,
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},
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},
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highlighted: false,
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autoGenerated: false,
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invalidated: false,
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isLocked: false,
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isVisible: true,
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metadata: {
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toolName: instance.getToolName(),
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viewPlaneNormal,
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FrameOfReferenceUID,
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referencedImageId,
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...options,
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},
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};
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addAnnotation(annotation, viewport.element);
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triggerAnnotationRenderForViewportIds([viewport.id]);
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}; }
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_calculateLength(pos1, pos2) {
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const dx = pos1[0] - pos2[0];
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const dy = pos1[1] - pos2[1];
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import PaintFillTool from './segmentation/PaintFillTool';
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import OrientationMarkerTool from './OrientationMarkerTool';
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import SegmentSelectTool from './segmentation/SegmentSelectTool';
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import SegmentBidirectionalTool from './segmentation/SegmentBidirectionalTool';
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import * as strategies from './segmentation/strategies';
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export { BaseTool, AnnotationTool, AnnotationDisplayTool, PanTool, TrackballRotateTool, DragProbeTool, WindowLevelTool, WindowLevelRegionTool, StackScrollTool, PlanarRotateTool, ZoomTool, MIPJumpToClickTool, ReferenceCursors, CrosshairsTool, ReferenceLinesTool, OverlayGridTool, SegmentationIntersectionTool, BidirectionalTool, LabelTool, LengthTool, HeightTool, ProbeTool, RectangleROITool, EllipticalROITool, CircleROITool, ETDRSGridTool, SplineROITool, PlanarFreehandROITool, PlanarFreehandContourSegmentationTool, LivewireContourTool, LivewireContourSegmentationTool, ArrowAnnotateTool, AngleTool, CobbAngleTool, UltrasoundDirectionalTool, KeyImageTool, AnnotationEraserTool as EraserTool, RectangleScissorsTool, CircleScissorsTool, SphereScissorsTool, RectangleROIThresholdTool, RectangleROIStartEndThresholdTool, CircleROIStartEndThresholdTool, SplineContourSegmentationTool, BrushTool, MagnifyTool, AdvancedMagnifyTool, PaintFillTool, ScaleOverlayTool, OrientationMarkerTool, SculptorTool, SegmentSelectTool, VolumeRotateTool, RegionSegmentTool, RegionSegmentPlusTool, WholeBodySegmentTool, LabelmapBaseTool, strategies, };
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export { BaseTool, AnnotationTool, AnnotationDisplayTool, PanTool, TrackballRotateTool, DragProbeTool, WindowLevelTool, WindowLevelRegionTool, StackScrollTool, PlanarRotateTool, ZoomTool, MIPJumpToClickTool, ReferenceCursors, CrosshairsTool, ReferenceLinesTool, OverlayGridTool, SegmentationIntersectionTool, BidirectionalTool, LabelTool, LengthTool, HeightTool, ProbeTool, RectangleROITool, EllipticalROITool, CircleROITool, ETDRSGridTool, SplineROITool, PlanarFreehandROITool, PlanarFreehandContourSegmentationTool, LivewireContourTool, LivewireContourSegmentationTool, ArrowAnnotateTool, AngleTool, CobbAngleTool, UltrasoundDirectionalTool, KeyImageTool, AnnotationEraserTool as EraserTool, RectangleScissorsTool, CircleScissorsTool, SphereScissorsTool, RectangleROIThresholdTool, RectangleROIStartEndThresholdTool, CircleROIStartEndThresholdTool, SplineContourSegmentationTool, BrushTool, MagnifyTool, AdvancedMagnifyTool, PaintFillTool, ScaleOverlayTool, OrientationMarkerTool, SculptorTool, SegmentSelectTool, VolumeRotateTool, RegionSegmentTool, RegionSegmentPlusTool, WholeBodySegmentTool, LabelmapBaseTool, SegmentBidirectionalTool, strategies, };
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package/dist/esm/tools/index.js
CHANGED
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import PaintFillTool from './segmentation/PaintFillTool';
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import OrientationMarkerTool from './OrientationMarkerTool';
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import SegmentSelectTool from './segmentation/SegmentSelectTool';
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import SegmentBidirectionalTool from './segmentation/SegmentBidirectionalTool';
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import * as strategies from './segmentation/strategies';
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export { BaseTool, AnnotationTool, AnnotationDisplayTool, PanTool, TrackballRotateTool, DragProbeTool, WindowLevelTool, WindowLevelRegionTool, StackScrollTool, PlanarRotateTool, ZoomTool, MIPJumpToClickTool, ReferenceCursors, CrosshairsTool, ReferenceLinesTool, OverlayGridTool, SegmentationIntersectionTool, BidirectionalTool, LabelTool, LengthTool, HeightTool, ProbeTool, RectangleROITool, EllipticalROITool, CircleROITool, ETDRSGridTool, SplineROITool, PlanarFreehandROITool, PlanarFreehandContourSegmentationTool, LivewireContourTool, LivewireContourSegmentationTool, ArrowAnnotateTool, AngleTool, CobbAngleTool, UltrasoundDirectionalTool, KeyImageTool, AnnotationEraserTool as EraserTool, RectangleScissorsTool, CircleScissorsTool, SphereScissorsTool, RectangleROIThresholdTool, RectangleROIStartEndThresholdTool, CircleROIStartEndThresholdTool, SplineContourSegmentationTool, BrushTool, MagnifyTool, AdvancedMagnifyTool, PaintFillTool, ScaleOverlayTool, OrientationMarkerTool, SculptorTool, SegmentSelectTool, VolumeRotateTool, RegionSegmentTool, RegionSegmentPlusTool, WholeBodySegmentTool, LabelmapBaseTool, strategies, };
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58
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export { BaseTool, AnnotationTool, AnnotationDisplayTool, PanTool, TrackballRotateTool, DragProbeTool, WindowLevelTool, WindowLevelRegionTool, StackScrollTool, PlanarRotateTool, ZoomTool, MIPJumpToClickTool, ReferenceCursors, CrosshairsTool, ReferenceLinesTool, OverlayGridTool, SegmentationIntersectionTool, BidirectionalTool, LabelTool, LengthTool, HeightTool, ProbeTool, RectangleROITool, EllipticalROITool, CircleROITool, ETDRSGridTool, SplineROITool, PlanarFreehandROITool, PlanarFreehandContourSegmentationTool, LivewireContourTool, LivewireContourSegmentationTool, ArrowAnnotateTool, AngleTool, CobbAngleTool, UltrasoundDirectionalTool, KeyImageTool, AnnotationEraserTool as EraserTool, RectangleScissorsTool, CircleScissorsTool, SphereScissorsTool, RectangleROIThresholdTool, RectangleROIStartEndThresholdTool, CircleROIStartEndThresholdTool, SplineContourSegmentationTool, BrushTool, MagnifyTool, AdvancedMagnifyTool, PaintFillTool, ScaleOverlayTool, OrientationMarkerTool, SculptorTool, SegmentSelectTool, VolumeRotateTool, RegionSegmentTool, RegionSegmentPlusTool, WholeBodySegmentTool, LabelmapBaseTool, SegmentBidirectionalTool, strategies, };
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@@ -0,0 +1,27 @@
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import type { Types } from '@cornerstonejs/core';
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import type { EventTypes, PublicToolProps, SVGDrawingHelper, Annotation } from '../../types';
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import type { BidirectionalAnnotation, SegmentBidirectionalAnnotation } from '../../types/ToolSpecificAnnotationTypes';
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import BidirectionalTool from '../annotation/BidirectionalTool';
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declare class SegmentBidirectionalTool extends BidirectionalTool {
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static toolName: string;
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editData: {
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annotation: Annotation;
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viewportIdsToRender: string[];
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handleIndex?: number;
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movingTextBox: boolean;
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newAnnotation?: boolean;
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hasMoved?: boolean;
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} | null;
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isDrawing: boolean;
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isHandleOutsideImage: boolean;
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preventHandleOutsideImage: boolean;
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constructor(toolProps?: PublicToolProps);
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addNewAnnotation(evt: EventTypes.InteractionEventType): BidirectionalAnnotation;
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static hydrate: (viewportId: string, axis: [[Types.Point3, Types.Point3], [Types.Point3, Types.Point3]], options?: {
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segmentIndex?: number;
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segmentationId?: string;
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annotationUID?: string;
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}) => SegmentBidirectionalAnnotation;
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renderAnnotation: (enabledElement: Types.IEnabledElement, svgDrawingHelper: SVGDrawingHelper) => boolean;
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}
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export default SegmentBidirectionalTool;
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@@ -0,0 +1,253 @@
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import { getEnabledElement, utilities as csUtils, getEnabledElementByViewportId, utilities, } from '@cornerstonejs/core';
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2
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import { addAnnotation, getAllAnnotations, getAnnotations, removeAnnotation, } from '../../stateManagement/annotation/annotationState';
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import { isAnnotationLocked } from '../../stateManagement/annotation/annotationLocking';
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import { isAnnotationVisible } from '../../stateManagement/annotation/annotationVisibility';
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import { drawLine as drawLineSvg, drawHandles as drawHandlesSvg, drawLinkedTextBox as drawLinkedTextBoxSvg, } from '../../drawingSvg';
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import { getViewportIdsWithToolToRender } from '../../utilities/viewportFilters';
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import { getTextBoxCoordsCanvas } from '../../utilities/drawing';
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import { hideElementCursor } from '../../cursors/elementCursor';
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import triggerAnnotationRenderForViewportIds from '../../utilities/triggerAnnotationRenderForViewportIds';
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import BidirectionalTool from '../annotation/BidirectionalTool';
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import { getSegmentIndexColor } from '../../stateManagement/segmentation/config/segmentationColor';
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class SegmentBidirectionalTool extends BidirectionalTool {
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static { this.toolName = 'SegmentBidirectional'; }
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constructor(toolProps = {}) {
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super(toolProps);
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this.renderAnnotation = (enabledElement, svgDrawingHelper) => {
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let renderStatus = true;
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const { viewport } = enabledElement;
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const { element } = viewport;
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const viewportId = viewport.id;
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let annotations = getAnnotations(this.getToolName(), element);
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if (!annotations?.length) {
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return renderStatus;
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+
}
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annotations = this.filterInteractableAnnotationsForElement(element, annotations);
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26
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+
if (!annotations?.length) {
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27
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return renderStatus;
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28
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+
}
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const targetId = this.getTargetId(viewport);
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+
const renderingEngine = viewport.getRenderingEngine();
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31
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const styleSpecifier = {
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toolGroupId: this.toolGroupId,
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toolName: this.getToolName(),
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viewportId: enabledElement.viewport.id,
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};
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36
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+
for (let i = 0; i < annotations.length; i++) {
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37
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const annotation = annotations[i];
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38
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const { annotationUID, data } = annotation;
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39
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const { points, activeHandleIndex } = data.handles;
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40
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+
const canvasCoordinates = points.map((p) => viewport.worldToCanvas(p));
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styleSpecifier.annotationUID = annotationUID;
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const { segmentIndex, segmentationId } = annotation.metadata;
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const { lineWidth, lineDash, shadow } = this.getAnnotationStyle({
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annotation,
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styleSpecifier,
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46
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});
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47
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const colorArray = getSegmentIndexColor(viewportId, segmentationId, segmentIndex);
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48
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const color = `rgb(${colorArray.slice(0, 3).join(',')})`;
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49
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+
if (!data.cachedStats[targetId] ||
|
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50
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data.cachedStats[targetId].unit == null) {
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data.cachedStats[targetId] = {
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length: null,
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width: null,
|
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54
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unit: null,
|
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55
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};
|
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56
|
+
this._calculateCachedStats(annotation, renderingEngine, enabledElement);
|
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57
|
+
}
|
|
58
|
+
else if (annotation.invalidated) {
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59
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+
this._throttledCalculateCachedStats(annotation, renderingEngine, enabledElement);
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60
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}
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61
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if (!viewport.getRenderingEngine()) {
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console.warn('Rendering Engine has been destroyed');
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63
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return renderStatus;
|
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64
|
+
}
|
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65
|
+
let activeHandleCanvasCoords;
|
|
66
|
+
if (!isAnnotationVisible(annotationUID)) {
|
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67
|
+
continue;
|
|
68
|
+
}
|
|
69
|
+
if (!isAnnotationLocked(annotationUID) &&
|
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70
|
+
!this.editData &&
|
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71
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+
activeHandleIndex !== null) {
|
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72
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+
activeHandleCanvasCoords = [canvasCoordinates[activeHandleIndex]];
|
|
73
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+
}
|
|
74
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+
if (activeHandleCanvasCoords) {
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75
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+
const handleGroupUID = '0';
|
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76
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+
drawHandlesSvg(svgDrawingHelper, annotationUID, handleGroupUID, activeHandleCanvasCoords, {
|
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77
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color,
|
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78
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+
});
|
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79
|
+
}
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|
80
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+
const dataId1 = `${annotationUID}-line-1`;
|
|
81
|
+
const dataId2 = `${annotationUID}-line-2`;
|
|
82
|
+
const lineUID = '0';
|
|
83
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+
drawLineSvg(svgDrawingHelper, annotationUID, lineUID, canvasCoordinates[0], canvasCoordinates[1], {
|
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84
|
+
color,
|
|
85
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+
lineWidth,
|
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86
|
+
lineDash,
|
|
87
|
+
shadow,
|
|
88
|
+
}, dataId1);
|
|
89
|
+
const secondLineUID = '1';
|
|
90
|
+
drawLineSvg(svgDrawingHelper, annotationUID, secondLineUID, canvasCoordinates[2], canvasCoordinates[3], {
|
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91
|
+
color,
|
|
92
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+
lineWidth,
|
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93
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+
lineDash,
|
|
94
|
+
shadow,
|
|
95
|
+
}, dataId2);
|
|
96
|
+
renderStatus = true;
|
|
97
|
+
const options = this.getLinkedTextBoxStyle(styleSpecifier, annotation);
|
|
98
|
+
if (!options.visibility) {
|
|
99
|
+
data.handles.textBox = {
|
|
100
|
+
hasMoved: false,
|
|
101
|
+
worldPosition: [0, 0, 0],
|
|
102
|
+
worldBoundingBox: {
|
|
103
|
+
topLeft: [0, 0, 0],
|
|
104
|
+
topRight: [0, 0, 0],
|
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105
|
+
bottomLeft: [0, 0, 0],
|
|
106
|
+
bottomRight: [0, 0, 0],
|
|
107
|
+
},
|
|
108
|
+
};
|
|
109
|
+
continue;
|
|
110
|
+
}
|
|
111
|
+
options.color = color;
|
|
112
|
+
const textLines = this.configuration.getTextLines(data, targetId);
|
|
113
|
+
if (!textLines || textLines.length === 0) {
|
|
114
|
+
continue;
|
|
115
|
+
}
|
|
116
|
+
let canvasTextBoxCoords;
|
|
117
|
+
if (!data.handles.textBox.hasMoved) {
|
|
118
|
+
canvasTextBoxCoords = getTextBoxCoordsCanvas(canvasCoordinates);
|
|
119
|
+
data.handles.textBox.worldPosition =
|
|
120
|
+
viewport.canvasToWorld(canvasTextBoxCoords);
|
|
121
|
+
}
|
|
122
|
+
const textBoxPosition = viewport.worldToCanvas(data.handles.textBox.worldPosition);
|
|
123
|
+
const textBoxUID = '1';
|
|
124
|
+
const boundingBox = drawLinkedTextBoxSvg(svgDrawingHelper, annotationUID, textBoxUID, textLines, textBoxPosition, canvasCoordinates, {}, options);
|
|
125
|
+
const { x: left, y: top, width, height } = boundingBox;
|
|
126
|
+
data.handles.textBox.worldBoundingBox = {
|
|
127
|
+
topLeft: viewport.canvasToWorld([left, top]),
|
|
128
|
+
topRight: viewport.canvasToWorld([left + width, top]),
|
|
129
|
+
bottomLeft: viewport.canvasToWorld([left, top + height]),
|
|
130
|
+
bottomRight: viewport.canvasToWorld([left + width, top + height]),
|
|
131
|
+
};
|
|
132
|
+
}
|
|
133
|
+
return renderStatus;
|
|
134
|
+
};
|
|
135
|
+
}
|
|
136
|
+
addNewAnnotation(evt) {
|
|
137
|
+
const eventDetail = evt.detail;
|
|
138
|
+
const { currentPoints, element } = eventDetail;
|
|
139
|
+
const worldPos = currentPoints.world;
|
|
140
|
+
const enabledElement = getEnabledElement(element);
|
|
141
|
+
const { viewport } = enabledElement;
|
|
142
|
+
this.isDrawing = true;
|
|
143
|
+
const camera = viewport.getCamera();
|
|
144
|
+
const { viewPlaneNormal, viewUp } = camera;
|
|
145
|
+
const referencedImageId = this.getReferencedImageId(viewport, worldPos, viewPlaneNormal, viewUp);
|
|
146
|
+
const FrameOfReferenceUID = viewport.getFrameOfReferenceUID();
|
|
147
|
+
const annotation = {
|
|
148
|
+
highlighted: true,
|
|
149
|
+
invalidated: true,
|
|
150
|
+
metadata: {
|
|
151
|
+
toolName: this.getToolName(),
|
|
152
|
+
viewPlaneNormal: [...viewPlaneNormal],
|
|
153
|
+
viewUp: [...viewUp],
|
|
154
|
+
FrameOfReferenceUID,
|
|
155
|
+
referencedImageId,
|
|
156
|
+
...viewport.getViewReference({ points: [worldPos] }),
|
|
157
|
+
},
|
|
158
|
+
data: {
|
|
159
|
+
handles: {
|
|
160
|
+
points: [
|
|
161
|
+
[...worldPos],
|
|
162
|
+
[...worldPos],
|
|
163
|
+
[...worldPos],
|
|
164
|
+
[...worldPos],
|
|
165
|
+
],
|
|
166
|
+
textBox: {
|
|
167
|
+
hasMoved: false,
|
|
168
|
+
worldPosition: [0, 0, 0],
|
|
169
|
+
worldBoundingBox: {
|
|
170
|
+
topLeft: [0, 0, 0],
|
|
171
|
+
topRight: [0, 0, 0],
|
|
172
|
+
bottomLeft: [0, 0, 0],
|
|
173
|
+
bottomRight: [0, 0, 0],
|
|
174
|
+
},
|
|
175
|
+
},
|
|
176
|
+
activeHandleIndex: null,
|
|
177
|
+
},
|
|
178
|
+
label: '',
|
|
179
|
+
cachedStats: {},
|
|
180
|
+
},
|
|
181
|
+
};
|
|
182
|
+
addAnnotation(annotation, element);
|
|
183
|
+
const viewportIdsToRender = getViewportIdsWithToolToRender(element, this.getToolName());
|
|
184
|
+
this.editData = {
|
|
185
|
+
annotation,
|
|
186
|
+
viewportIdsToRender,
|
|
187
|
+
handleIndex: 1,
|
|
188
|
+
movingTextBox: false,
|
|
189
|
+
newAnnotation: true,
|
|
190
|
+
hasMoved: false,
|
|
191
|
+
};
|
|
192
|
+
this._activateDraw(element);
|
|
193
|
+
hideElementCursor(element);
|
|
194
|
+
evt.preventDefault();
|
|
195
|
+
triggerAnnotationRenderForViewportIds(viewportIdsToRender);
|
|
196
|
+
return annotation;
|
|
197
|
+
}
|
|
198
|
+
static { this.hydrate = (viewportId, axis, options) => {
|
|
199
|
+
const enabledElement = getEnabledElementByViewportId(viewportId);
|
|
200
|
+
if (!enabledElement) {
|
|
201
|
+
return;
|
|
202
|
+
}
|
|
203
|
+
const { viewport } = enabledElement;
|
|
204
|
+
const FrameOfReferenceUID = viewport.getFrameOfReferenceUID();
|
|
205
|
+
const { viewPlaneNormal, viewUp } = viewport.getCamera();
|
|
206
|
+
const existingAnnotations = getAllAnnotations();
|
|
207
|
+
const toolAnnotations = existingAnnotations.filter((annotation) => annotation.metadata.toolName === 'SegmentBidirectional');
|
|
208
|
+
const existingAnnotation = toolAnnotations.find((annotation) => {
|
|
209
|
+
const { metadata } = annotation;
|
|
210
|
+
if (metadata.segmentIndex === options?.segmentIndex &&
|
|
211
|
+
metadata.segmentationId === options?.segmentationId) {
|
|
212
|
+
return true;
|
|
213
|
+
}
|
|
214
|
+
return false;
|
|
215
|
+
});
|
|
216
|
+
if (existingAnnotation) {
|
|
217
|
+
removeAnnotation(existingAnnotation.annotationUID);
|
|
218
|
+
}
|
|
219
|
+
const instance = new this();
|
|
220
|
+
const [majorAxis, minorAxis] = axis;
|
|
221
|
+
const [major0, major1] = majorAxis;
|
|
222
|
+
const [minor0, minor1] = minorAxis;
|
|
223
|
+
const points = [major0, major1, minor0, minor1];
|
|
224
|
+
const referencedImageId = instance.getReferencedImageId(viewport, points[0], viewPlaneNormal, viewUp);
|
|
225
|
+
const annotation = {
|
|
226
|
+
annotationUID: options?.annotationUID || utilities.uuidv4(),
|
|
227
|
+
data: {
|
|
228
|
+
handles: {
|
|
229
|
+
points,
|
|
230
|
+
activeHandleIndex: null,
|
|
231
|
+
},
|
|
232
|
+
},
|
|
233
|
+
highlighted: false,
|
|
234
|
+
autoGenerated: false,
|
|
235
|
+
invalidated: false,
|
|
236
|
+
isLocked: false,
|
|
237
|
+
isVisible: true,
|
|
238
|
+
metadata: {
|
|
239
|
+
segmentIndex: options?.segmentIndex,
|
|
240
|
+
segmentationId: options?.segmentationId,
|
|
241
|
+
toolName: instance.getToolName(),
|
|
242
|
+
viewPlaneNormal,
|
|
243
|
+
FrameOfReferenceUID,
|
|
244
|
+
referencedImageId,
|
|
245
|
+
...options,
|
|
246
|
+
},
|
|
247
|
+
};
|
|
248
|
+
addAnnotation(annotation, viewport.element);
|
|
249
|
+
triggerAnnotationRenderForViewportIds([viewport.id]);
|
|
250
|
+
return annotation;
|
|
251
|
+
}; }
|
|
252
|
+
}
|
|
253
|
+
export default SegmentBidirectionalTool;
|
|
@@ -1,6 +1,7 @@
|
|
|
1
1
|
import { BaseVolumeViewport, cache, Enums, eventTarget, } from '@cornerstonejs/core';
|
|
2
2
|
import { getCurrentLabelmapImageIdForViewport } from '../../../../stateManagement/segmentation/segmentationState';
|
|
3
3
|
import { getLabelmapActorEntry } from '../../../../stateManagement/segmentation/helpers';
|
|
4
|
+
import { getReferenceVolumeForSegmentationVolume } from '../../../../utilities/segmentation/getReferenceVolumeForSegmentationVolume';
|
|
4
5
|
function getStrategyDataForVolumeViewport({ operationData }) {
|
|
5
6
|
const { volumeId } = operationData;
|
|
6
7
|
if (!volumeId) {
|
|
@@ -15,19 +16,13 @@ function getStrategyDataForVolumeViewport({ operationData }) {
|
|
|
15
16
|
return null;
|
|
16
17
|
}
|
|
17
18
|
const segmentationVolume = cache.getVolume(volumeId);
|
|
18
|
-
|
|
19
|
+
const imageVolume = getReferenceVolumeForSegmentationVolume(volumeId);
|
|
20
|
+
if (!segmentationVolume || !imageVolume) {
|
|
19
21
|
return null;
|
|
20
22
|
}
|
|
21
|
-
const referencedVolumeId = segmentationVolume.referencedVolumeId;
|
|
22
|
-
const segmentationVoxelManager = segmentationVolume.voxelManager;
|
|
23
|
-
let imageVoxelManager;
|
|
24
|
-
let imageData;
|
|
25
|
-
if (referencedVolumeId) {
|
|
26
|
-
const imageVolume = cache.getVolume(referencedVolumeId);
|
|
27
|
-
imageVoxelManager = imageVolume.voxelManager;
|
|
28
|
-
imageData = imageVolume.imageData;
|
|
29
|
-
}
|
|
30
23
|
const { imageData: segmentationImageData } = segmentationVolume;
|
|
24
|
+
const { voxelManager: segmentationVoxelManager } = segmentationVolume;
|
|
25
|
+
const { voxelManager: imageVoxelManager, imageData } = imageVolume;
|
|
31
26
|
return {
|
|
32
27
|
segmentationImageData,
|
|
33
28
|
segmentationVoxelManager,
|
|
@@ -29,10 +29,22 @@ type NamedStatistics = {
|
|
|
29
29
|
volume?: Statistics & {
|
|
30
30
|
name: 'volume';
|
|
31
31
|
};
|
|
32
|
-
circumference?: Statistics & {
|
|
33
|
-
name: 'circumference';
|
|
34
|
-
};
|
|
35
32
|
pointsInShape?: Types.IPointsManager<Types.Point3>;
|
|
33
|
+
median?: Statistics & {
|
|
34
|
+
name: 'median';
|
|
35
|
+
};
|
|
36
|
+
skewness?: Statistics & {
|
|
37
|
+
name: 'skewness';
|
|
38
|
+
};
|
|
39
|
+
kurtosis?: Statistics & {
|
|
40
|
+
name: 'kurtosis';
|
|
41
|
+
};
|
|
42
|
+
voxelCount?: Statistics & {
|
|
43
|
+
name: 'count';
|
|
44
|
+
};
|
|
45
|
+
lesionGlycolysis?: Statistics & {
|
|
46
|
+
name: 'lesionGlycolysis';
|
|
47
|
+
};
|
|
36
48
|
maxIJKs?: Array<{
|
|
37
49
|
value: number;
|
|
38
50
|
pointIJK: Types.Point3;
|
|
@@ -455,6 +455,40 @@ export interface ScaleOverlayAnnotation extends Annotation {
|
|
|
455
455
|
viewportId: string;
|
|
456
456
|
};
|
|
457
457
|
}
|
|
458
|
+
export interface SegmentBidirectionalAnnotation extends Annotation {
|
|
459
|
+
data: {
|
|
460
|
+
cachedStats: {
|
|
461
|
+
[targetId: string]: {
|
|
462
|
+
length: number;
|
|
463
|
+
width: number;
|
|
464
|
+
unit: string;
|
|
465
|
+
};
|
|
466
|
+
};
|
|
467
|
+
handles: {
|
|
468
|
+
points: Types.Point3[];
|
|
469
|
+
activeHandleIndex: number | null;
|
|
470
|
+
textBox: {
|
|
471
|
+
hasMoved: boolean;
|
|
472
|
+
worldPosition: Types.Point3;
|
|
473
|
+
worldBoundingBox: {
|
|
474
|
+
topLeft: Types.Point3;
|
|
475
|
+
topRight: Types.Point3;
|
|
476
|
+
bottomLeft: Types.Point3;
|
|
477
|
+
bottomRight: Types.Point3;
|
|
478
|
+
};
|
|
479
|
+
};
|
|
480
|
+
};
|
|
481
|
+
};
|
|
482
|
+
metadata: {
|
|
483
|
+
toolName: string;
|
|
484
|
+
viewPlaneNormal?: Types.Point3;
|
|
485
|
+
viewUp?: Types.Point3;
|
|
486
|
+
FrameOfReferenceUID: string;
|
|
487
|
+
referencedImageId?: string;
|
|
488
|
+
segmentIndex: number;
|
|
489
|
+
segmentationId: string;
|
|
490
|
+
};
|
|
491
|
+
}
|
|
458
492
|
export interface VideoRedactionAnnotation extends Annotation {
|
|
459
493
|
metadata: {
|
|
460
494
|
viewPlaneNormal: Types.Point3;
|
|
@@ -7,6 +7,7 @@ import { findContoursFromReducedSet } from './contourFinder';
|
|
|
7
7
|
import SegmentationRepresentations from '../../enums/SegmentationRepresentations';
|
|
8
8
|
const { Labelmap } = SegmentationRepresentations;
|
|
9
9
|
function generateContourSetsFromLabelmap({ segmentations }) {
|
|
10
|
+
console.warn('Deprecation Alert: This function will be removed in a future version of Cornerstone Tools. Please use the worker version of this function in computeWorker.');
|
|
10
11
|
const { representationData, segments = [0, 1] } = segmentations;
|
|
11
12
|
const { volumeId: segVolumeId } = representationData[Labelmap];
|
|
12
13
|
const vol = cornerstoneCache.getVolume(segVolumeId);
|