@cornerstonejs/tools 2.0.0-beta.5 → 2.0.0-beta.7

package/dist/esm/stateManagement/segmentation/polySeg/Contour/utils/createAndAddContourSegmentationsFromClippedSurfaces.js

@@ -0,0 +1,72 @@
+import { PlanarFreehandContourSegmentationTool } from '../../../../../tools';
+import { addAnnotation } from '../../../../annotation/annotationState';
+import { utilities } from '@cornerstonejs/core';
+export function createAndAddContourSegmentationsFromClippedSurfaces(rawContourData, viewport, segmentationId) {
+    const annotationUIDsMap = new Map();
+    for (const [segmentIndex, contoursData] of rawContourData) {
+        for (const contourData of contoursData) {
+            const { points } = contourData;
+            const { lineSegments, linesNumberOfPoints } = _extractLineSegments(contourData);
+            for (let i = 0; i < lineSegments.length; i++) {
+                const line = lineSegments[i];
+                const polyline = [];
+                for (let j = 0; j < linesNumberOfPoints[i]; j++) {
+                    const pointIndex = line[j];
+                    polyline.push([
+                        points[3 * pointIndex],
+                        points[3 * pointIndex + 1],
+                        points[3 * pointIndex + 2],
+                    ]);
+                }
+                if (polyline.length < 3) {
+                    continue;
+                }
+                const contourSegmentationAnnotation = {
+                    annotationUID: utilities.uuidv4(),
+                    data: {
+                        contour: {
+                            closed: true,
+                            polyline,
+                        },
+                        segmentation: {
+                            segmentationId,
+                            segmentIndex,
+                        },
+                        handles: {},
+                    },
+                    handles: {},
+                    highlighted: false,
+                    autoGenerated: false,
+                    invalidated: false,
+                    isLocked: false,
+                    isVisible: true,
+                    metadata: {
+                        toolName: PlanarFreehandContourSegmentationTool.toolName,
+                        ...viewport.getViewReference(),
+                    },
+                };
+                addAnnotation(contourSegmentationAnnotation, viewport.element);
+                const currentSet = annotationUIDsMap.get(segmentIndex) || new Set();
+                currentSet.add(contourSegmentationAnnotation.annotationUID);
+                annotationUIDsMap.set(segmentIndex, currentSet);
+            }
+        }
+    }
+    return annotationUIDsMap;
+}
+const _extractLineSegments = (contourData) => {
+    const { numberOfCells, lines } = contourData;
+    const lineSegments = [];
+    const linesNumberOfPoints = [];
+    for (let i = 0; i < lines.length;) {
+        const pointsInLine = lines[i];
+        linesNumberOfPoints.push(pointsInLine);
+        lineSegments.push(lines.slice(i + 1, i + pointsInLine + 1));
+        i += pointsInLine + 1;
+        if (lineSegments.length === numberOfCells) {
+            break;
+        }
+    }
+    return { lineSegments, linesNumberOfPoints };
+};
+//# sourceMappingURL=createAndAddContourSegmentationsFromClippedSurfaces.js.map

package/dist/esm/stateManagement/segmentation/polySeg/Contour/utils/createAndAddContourSegmentationsFromClippedSurfaces.js.map

@@ -0,0 +1 @@
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package/dist/esm/stateManagement/segmentation/polySeg/Contour/utils/extractContourData.js

@@ -0,0 +1,21 @@
+export function extractContourData(polyDataCache, segmentIndexMap) {
+    const rawResults = new Map();
+    for (const [cacheId, intersectionInfo] of polyDataCache) {
+        const surfaceId = cacheId.split('_')[1];
+        for (const [_, result] of intersectionInfo) {
+            if (!result) {
+                continue;
+            }
+            const segmentIndex = Number(surfaceId) || segmentIndexMap?.get(surfaceId);
+            if (!segmentIndex) {
+                continue;
+            }
+            if (!rawResults.has(segmentIndex)) {
+                rawResults.set(segmentIndex, []);
+            }
+            rawResults.get(segmentIndex).push(result);
+        }
+    }
+    return rawResults;
+}
+//# sourceMappingURL=extractContourData.js.map

package/dist/esm/stateManagement/segmentation/polySeg/Contour/utils/extractContourData.js.map

@@ -0,0 +1 @@
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package/dist/esm/stateManagement/segmentation/polySeg/Contour/utils/updateContoursOnCameraModified.js

@@ -0,0 +1,26 @@
+import { utilities, Enums } from '@cornerstonejs/core';
+import { extractContourData } from './extractContourData';
+import { clipAndCacheSurfacesForViewport } from '../../../helpers/clipAndCacheSurfacesForViewport';
+import { createAndAddContourSegmentationsFromClippedSurfaces } from './createAndAddContourSegmentationsFromClippedSurfaces';
+const currentViewportNormal = new Map();
+export function updateContoursOnCameraModified(surfacesInfo, viewport, segmentationRepresentationUID) {
+    async function cameraModifiedCallback(evt) {
+        const { camera } = evt.detail;
+        const { viewPlaneNormal } = camera;
+        const surface1 = surfacesInfo[0];
+        const currentNormal = currentViewportNormal.get(surface1.id);
+        if (utilities.isEqual(viewPlaneNormal, currentNormal)) {
+            return;
+        }
+        currentViewportNormal.set(surface1.id, viewPlaneNormal);
+        const polyDataCache = await clipAndCacheSurfacesForViewport(surfacesInfo, viewport, segmentationRepresentationUID);
+        const results = extractContourData(polyDataCache);
+        createAndAddContourSegmentationsFromClippedSurfaces(results, viewport, segmentationRepresentationUID);
+        viewport.render();
+    }
+    const camera = viewport.getCamera();
+    currentViewportNormal.set(surfacesInfo[0].id, camera.viewPlaneNormal);
+    viewport.element.removeEventListener(Enums.Events.CAMERA_MODIFIED, cameraModifiedCallback);
+    viewport.element.addEventListener(Enums.Events.CAMERA_MODIFIED);
+}
+//# sourceMappingURL=updateContoursOnCameraModified.js.map

package/dist/esm/stateManagement/segmentation/polySeg/Contour/utils/updateContoursOnCameraModified.js.map

@@ -0,0 +1 @@
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package/dist/esm/stateManagement/segmentation/polySeg/Labelmap/computeAndAddLabelmapRepresentation.js

@@ -0,0 +1,7 @@
+import { SegmentationRepresentations } from '../../../../enums';
+import { computeAndAddRepresentation } from '../computeAndAddRepresentation';
+import { computeLabelmapData } from './labelmapComputationStrategies';
+export function computeAndAddLabelmapRepresentation(segmentationId, options = {}) {
+    return computeAndAddRepresentation(segmentationId, SegmentationRepresentations.Labelmap, () => computeLabelmapData(segmentationId, options), () => undefined);
+}
+//# sourceMappingURL=computeAndAddLabelmapRepresentation.js.map

package/dist/esm/stateManagement/segmentation/polySeg/Labelmap/computeAndAddLabelmapRepresentation.js.map

@@ -0,0 +1 @@
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package/dist/esm/stateManagement/segmentation/polySeg/Labelmap/convertContourToLabelmap.js

@@ -0,0 +1,153 @@
+import { vec3 } from 'gl-matrix';
+import { cache, utilities, getWebWorkerManager, volumeLoader, imageLoader, metaData, Enums, triggerEvent, eventTarget, } from '@cornerstonejs/core';
+import { getAnnotation } from '../../..';
+import { WorkerTypes } from '../../../../enums';
+const workerManager = getWebWorkerManager();
+const triggerWorkerProgress = (eventTarget, progress) => {
+    triggerEvent(eventTarget, Enums.Events.WEB_WORKER_PROGRESS, {
+        progress,
+        type: WorkerTypes.POLYSEG_CONTOUR_TO_LABELMAP,
+    });
+};
+export async function convertContourToVolumeLabelmap(contourRepresentationData, options = {}) {
+    const { viewport } = options;
+    const imageIds = utilities.getViewportImageIds(viewport);
+    if (!imageIds) {
+        throw new Error('No imageIds found, labelmap computation from contour requires viewports with imageIds');
+    }
+    const segmentationVolumeId = utilities.uuidv4();
+    const volumeProps = utilities.generateVolumePropsFromImageIds(imageIds, segmentationVolumeId);
+    const { metadata, dimensions, origin, direction, spacing, scalarData } = volumeProps;
+    const segmentationVolume = await volumeLoader.createLocalSegmentationVolume({
+        dimensions,
+        origin,
+        direction,
+        spacing,
+        metadata,
+        imageIds: imageIds.map((imageId) => `generated://${imageId}`),
+        referencedImageIds: imageIds,
+    }, segmentationVolumeId);
+    const { segmentIndices, annotationUIDsInSegmentMap } = _getAnnotationMapFromSegmentation(contourRepresentationData, options);
+    triggerWorkerProgress(eventTarget, 0);
+    const newScalarData = await workerManager.executeTask('polySeg', 'convertContourToVolumeLabelmap', {
+        segmentIndices,
+        dimensions,
+        scalarData,
+        origin,
+        direction,
+        spacing,
+        annotationUIDsInSegmentMap,
+    }, {
+        callbacks: [
+            (progress) => {
+                triggerWorkerProgress(eventTarget, progress);
+            },
+        ],
+    });
+    triggerWorkerProgress(eventTarget, 1);
+    segmentationVolume.imageData
+        .getPointData()
+        .getScalars()
+        .setData(newScalarData);
+    segmentationVolume.imageData.modified();
+    segmentationVolume.modified();
+    return {
+        volumeId: segmentationVolume.volumeId,
+    };
+}
+export async function convertContourToStackLabelmap(contourRepresentationData, options = {}) {
+    if (!options.viewport) {
+        throw new Error('No viewport provided, labelmap computation from contour requires viewports');
+    }
+    const viewport = options.viewport;
+    const imageIds = viewport.getImageIds();
+    if (!imageIds) {
+        throw new Error('No imageIds found, labelmap computation from contour requires viewports with imageIds');
+    }
+    imageIds.forEach((imageId) => {
+        if (!cache.getImageLoadObject(imageId)) {
+            throw new Error('ImageIds must be cached before converting contour to labelmap');
+        }
+    });
+    const { imageIds: segmentationImageIds } = await imageLoader.createAndCacheDerivedSegmentationImages(imageIds);
+    const { segmentIndices, annotationUIDsInSegmentMap } = _getAnnotationMapFromSegmentation(contourRepresentationData, options);
+    const segmentationsInfo = new Map();
+    segmentationImageIds.forEach((segImageId, index) => {
+        const segImage = cache.getImage(segImageId);
+        const imagePlaneModule = metaData.get(Enums.MetadataModules.IMAGE_PLANE, segImageId);
+        let { columnCosines, rowCosines, rowPixelSpacing, columnPixelSpacing, imagePositionPatient, } = imagePlaneModule;
+        columnCosines = columnCosines ?? [0, 1, 0];
+        rowCosines = rowCosines ?? [1, 0, 0];
+        rowPixelSpacing = rowPixelSpacing ?? 1;
+        columnPixelSpacing = columnPixelSpacing ?? 1;
+        imagePositionPatient = imagePositionPatient ?? [0, 0, 0];
+        const rowCosineVec = vec3.fromValues(rowCosines[0], rowCosines[1], rowCosines[2]);
+        const colCosineVec = vec3.fromValues(columnCosines[0], columnCosines[1], columnCosines[2]);
+        const scanAxisNormal = vec3.create();
+        vec3.cross(scanAxisNormal, rowCosineVec, colCosineVec);
+        const direction = [...rowCosineVec, ...colCosineVec, ...scanAxisNormal];
+        const spacing = [rowPixelSpacing, columnPixelSpacing, 1];
+        const origin = imagePositionPatient;
+        segmentationsInfo.set(imageIds[index], {
+            direction,
+            spacing,
+            origin,
+            scalarData: segImage.getPixelData(),
+            imageId: segImageId,
+            dimensions: [segImage.width, segImage.height, 1],
+        });
+    });
+    triggerWorkerProgress(eventTarget, 0);
+    const newSegmentationsScalarData = await workerManager.executeTask('polySeg', 'convertContourToStackLabelmap', {
+        segmentationsInfo,
+        annotationUIDsInSegmentMap,
+        segmentIndices,
+    }, {
+        callbacks: [
+            (progress) => {
+                triggerWorkerProgress(eventTarget, progress);
+            },
+        ],
+    });
+    triggerWorkerProgress(eventTarget, 1);
+    const imageIdReferenceMap = new Map();
+    newSegmentationsScalarData.forEach(({ scalarData }, referencedImageId) => {
+        const segmentationInfo = segmentationsInfo.get(referencedImageId);
+        const { imageId: segImageId } = segmentationInfo;
+        const segImage = cache.getImage(segImageId);
+        segImage.getPixelData().set(scalarData);
+        segImage.imageFrame?.pixelData?.set(scalarData);
+        imageIdReferenceMap.set(referencedImageId, segImageId);
+    });
+    return {
+        imageIdReferenceMap,
+    };
+}
+function _getAnnotationMapFromSegmentation(contourRepresentationData, options = {}) {
+    const annotationMap = contourRepresentationData.annotationUIDsMap;
+    const segmentIndices = options.segmentIndices?.length
+        ? options.segmentIndices
+        : Array.from(annotationMap.keys());
+    const annotationUIDsInSegmentMap = new Map();
+    segmentIndices.forEach((index) => {
+        const annotationUIDsInSegment = annotationMap.get(index);
+        let uids = Array.from(annotationUIDsInSegment);
+        uids = uids.filter((uid) => !getAnnotation(uid).parentAnnotationUID);
+        const annotations = uids.map((uid) => {
+            const annotation = getAnnotation(uid);
+            const hasChildAnnotations = annotation.childAnnotationUIDs?.length;
+            return {
+                polyline: annotation.data.contour.polyline,
+                referencedImageId: annotation.metadata.referencedImageId,
+                holesPolyline: hasChildAnnotations &&
+                    annotation.childAnnotationUIDs.map((childUID) => {
+                        const childAnnotation = getAnnotation(childUID);
+                        return childAnnotation.data.contour.polyline;
+                    }),
+            };
+        });
+        annotationUIDsInSegmentMap.set(index, annotations);
+    });
+    return { segmentIndices, annotationUIDsInSegmentMap };
+}
+//# sourceMappingURL=convertContourToLabelmap.js.map

package/dist/esm/stateManagement/segmentation/polySeg/Labelmap/convertContourToLabelmap.js.map

@@ -0,0 +1 @@
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package/dist/esm/stateManagement/segmentation/polySeg/Labelmap/convertSurfaceToLabelmap.js

@@ -0,0 +1,54 @@
+import { Enums, cache, eventTarget, getWebWorkerManager, triggerEvent, } from '@cornerstonejs/core';
+import { WorkerTypes } from '../../../../enums';
+const workerManager = getWebWorkerManager();
+const triggerWorkerProgress = (eventTarget, progress) => {
+    triggerEvent(eventTarget, Enums.Events.WEB_WORKER_PROGRESS, {
+        progress,
+        type: WorkerTypes.POLYSEG_SURFACE_TO_LABELMAP,
+    });
+};
+export async function convertSurfaceToVolumeLabelmap(surfaceRepresentationData, segmentationVolume) {
+    const { geometryIds } = surfaceRepresentationData;
+    if (!geometryIds?.size) {
+        throw new Error('No geometry IDs found for surface representation');
+    }
+    const segmentsInfo = new Map();
+    geometryIds.forEach((geometryId, segmentIndex) => {
+        const geometry = cache.getGeometry(geometryId);
+        const geometryData = geometry.data;
+        const points = geometryData.getPoints();
+        const polys = geometryData.getPolys();
+        segmentsInfo.set(segmentIndex, {
+            points,
+            polys,
+        });
+    });
+    const { dimensions, direction, origin, spacing } = segmentationVolume;
+    triggerWorkerProgress(eventTarget, 0);
+    const newScalarData = await workerManager.executeTask('polySeg', 'convertSurfacesToVolumeLabelmap', {
+        segmentsInfo,
+        dimensions,
+        spacing,
+        direction,
+        origin,
+    }, {
+        callbacks: [
+            (progress) => {
+                triggerWorkerProgress(eventTarget, progress);
+            },
+        ],
+    });
+    triggerWorkerProgress(eventTarget, 1);
+    segmentationVolume.imageData
+        .getPointData()
+        .getScalars()
+        .setData(newScalarData);
+    segmentationVolume.imageData.modified();
+    segmentationVolume.modified();
+    return {
+        volumeId: segmentationVolume.volumeId,
+    };
+}
+export async function convertSurfaceToStackLabelmap() {
+}
+//# sourceMappingURL=convertSurfaceToLabelmap.js.map

package/dist/esm/stateManagement/segmentation/polySeg/Labelmap/convertSurfaceToLabelmap.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"convertSurfaceToLabelmap.js","sourceRoot":"","sources":["../../../../../../src/stateManagement/segmentation/polySeg/Labelmap/convertSurfaceToLabelmap.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,KAAK,EAEL,KAAK,EACL,WAAW,EACX,mBAAmB,EACnB,YAAY,GACb,MAAM,qBAAqB,CAAC;AAE7B,OAAO,EAAE,WAAW,EAAE,MAAM,mBAAmB,CAAC;AAEhD,MAAM,aAAa,GAAG,mBAAmB,EAAE,CAAC;AAE5C,MAAM,qBAAqB,GAAG,CAAC,WAAW,EAAE,QAAQ,EAAE,EAAE;IACtD,YAAY,CAAC,WAAW,EAAE,KAAK,CAAC,MAAM,CAAC,mBAAmB,EAAE;QAC1D,QAAQ;QACR,IAAI,EAAE,WAAW,CAAC,2BAA2B;KAC9C,CAAC,CAAC;AACL,CAAC,CAAC;AAEF,MAAM,CAAC,KAAK,UAAU,8BAA8B,CAClD,yBAAkD,EAClD,kBAAsC;IAEtC,MAAM,EAAE,WAAW,EAAE,GAAG,yBAAyB,CAAC;IAClD,IAAI,CAAC,WAAW,EAAE,IAAI,EAAE;QACtB,MAAM,IAAI,KAAK,CAAC,kDAAkD,CAAC,CAAC;KACrE;IAED,MAAM,YAAY,GAAG,IAAI,GAAG,EAM3B,CAAC;IAEF,WAAW,CAAC,OAAO,CAAC,CAAC,UAAU,EAAE,YAAY,EAAE,EAAE;QAC/C,MAAM,QAAQ,GAAG,KAAK,CAAC,WAAW,CAAC,UAAU,CAAC,CAAC;QAC/C,MAAM,YAAY,GAAG,QAAQ,CAAC,IAAsB,CAAC;QACrD,MAAM,MAAM,GAAG,YAAY,CAAC,SAAS,EAAE,CAAC;QACxC,MAAM,KAAK,GAAG,YAAY,CAAC,QAAQ,EAAE,CAAC;QAEtC,YAAY,CAAC,GAAG,CAAC,YAAY,EAAE;YAC7B,MAAM;YACN,KAAK;SACN,CAAC,CAAC;IACL,CAAC,CAAC,CAAC;IAEH,MAAM,EAAE,UAAU,EAAE,SAAS,EAAE,MAAM,EAAE,OAAO,EAAE,GAAG,kBAAkB,CAAC;IAEtE,qBAAqB,CAAC,WAAW,EAAE,CAAC,CAAC,CAAC;IAEtC,MAAM,aAAa,GAAG,MAAM,aAAa,CAAC,WAAW,CACnD,SAAS,EACT,iCAAiC,EACjC;QACE,YAAY;QACZ,UAAU;QACV,OAAO;QACP,SAAS;QACT,MAAM;KACP,EACD;QACE,SAAS,EAAE;YACT,CAAC,QAAQ,EAAE,EAAE;gBACX,qBAAqB,CAAC,WAAW,EAAE,QAAQ,CAAC,CAAC;YAC/C,CAAC;SACF;KACF,CACF,CAAC;IAEF,qBAAqB,CAAC,WAAW,EAAE,CAAC,CAAC,CAAC;IAEtC,kBAAkB,CAAC,SAAS;SACzB,YAAY,EAAE;SACd,UAAU,EAAE;SACZ,OAAO,CAAC,aAAa,CAAC,CAAC;IAC1B,kBAAkB,CAAC,SAAS,CAAC,QAAQ,EAAE,CAAC;IAGxC,kBAAkB,CAAC,QAAQ,EAAE,CAAC;IAE9B,OAAO;QACL,QAAQ,EAAE,kBAAkB,CAAC,QAAQ;KACtC,CAAC;AACJ,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,6BAA6B;AAEnD,CAAC"}

package/dist/esm/stateManagement/segmentation/polySeg/Labelmap/labelmapComputationStrategies.js

@@ -0,0 +1,101 @@
+import { VolumeViewport, volumeLoader, utilities } from '@cornerstonejs/core';
+import { getUniqueSegmentIndices } from '../../../../utilities/segmentation';
+import { getSegmentation } from '../../segmentationState';
+import { convertContourToStackLabelmap, convertContourToVolumeLabelmap, } from './convertContourToLabelmap';
+import { convertSurfaceToVolumeLabelmap } from './convertSurfaceToLabelmap';
+import { computeStackSegmentationFromVolume } from '../../convertVolumeToStackSegmentation';
+export async function computeLabelmapData(segmentationId, options = {}) {
+    const segmentIndices = options.segmentIndices?.length
+        ? options.segmentIndices
+        : getUniqueSegmentIndices(segmentationId);
+    let rawLabelmapData;
+    const segmentation = getSegmentation(segmentationId);
+    const representationData = segmentation.representationData;
+    try {
+        if (representationData.CONTOUR) {
+            rawLabelmapData = await computeLabelmapFromContourSegmentation(segmentationId, {
+                segmentIndices,
+                ...options,
+            });
+        }
+        else if (representationData.SURFACE) {
+            rawLabelmapData = await computeLabelmapFromSurfaceSegmentation(segmentation.segmentationId, {
+                segmentIndices,
+                ...options,
+            });
+        }
+    }
+    catch (error) {
+        console.error(error);
+        throw error;
+    }
+    if (!rawLabelmapData) {
+        throw new Error('Not enough data to convert to surface, currently only support converting volume labelmap to surface if available');
+    }
+    return rawLabelmapData;
+}
+async function computeLabelmapFromContourSegmentation(segmentationId, options = {}) {
+    const isVolume = options.viewport instanceof VolumeViewport ?? true;
+    if (isVolume && !options.viewport) {
+        throw new Error('Cannot compute labelmap from contour segmentation without providing the viewport');
+    }
+    const segmentIndices = options.segmentIndices?.length
+        ? options.segmentIndices
+        : getUniqueSegmentIndices(segmentationId);
+    const segmentation = getSegmentation(segmentationId);
+    const representationData = segmentation.representationData.CONTOUR;
+    const convertFunction = isVolume
+        ? convertContourToVolumeLabelmap
+        : convertContourToStackLabelmap;
+    const result = await convertFunction(representationData, {
+        segmentIndices,
+        segmentationRepresentationUID: options.segmentationRepresentationUID,
+        viewport: options.viewport,
+    });
+    return result;
+}
+async function computeLabelmapFromSurfaceSegmentation(segmentationId, options = {}) {
+    const isVolume = options.viewport instanceof VolumeViewport ?? true;
+    const segmentIndices = options.segmentIndices?.length
+        ? options.segmentIndices
+        : getUniqueSegmentIndices(segmentationId);
+    const segmentation = getSegmentation(segmentationId);
+    const segmentsGeometryIds = new Map();
+    const representationData = segmentation.representationData.SURFACE;
+    representationData.geometryIds.forEach((geometryId, segmentIndex) => {
+        if (segmentIndices.includes(segmentIndex)) {
+            segmentsGeometryIds.set(segmentIndex, geometryId);
+        }
+    });
+    if (isVolume && !options.viewport) {
+        throw new Error('Cannot compute labelmap from surface segmentation without providing the viewport');
+    }
+    let segmentationVolume;
+    if (isVolume) {
+        const defaultActor = options.viewport.getDefaultActor();
+        const { uid: volumeId } = defaultActor;
+        segmentationVolume =
+            await volumeLoader.createAndCacheDerivedSegmentationVolume(volumeId);
+    }
+    else {
+        const imageIds = options.viewport.getImageIds();
+        const volumeId = 'generatedSegmentationVolumeId';
+        const volumeProps = utilities.generateVolumePropsFromImageIds(imageIds, volumeId);
+        delete volumeProps.imageIds;
+        segmentationVolume = await volumeLoader.createLocalSegmentationVolume({
+            ...volumeProps,
+            scalarData: volumeProps.scalarData,
+            referencedImageIds: imageIds,
+        }, volumeId);
+    }
+    const result = await convertSurfaceToVolumeLabelmap({ geometryIds: segmentsGeometryIds }, segmentationVolume);
+    if (isVolume) {
+        return result;
+    }
+    const stackData = (await computeStackSegmentationFromVolume({
+        volumeId: segmentationVolume.volumeId,
+    }));
+    return stackData;
+}
+export { computeLabelmapFromContourSegmentation };
+//# sourceMappingURL=labelmapComputationStrategies.js.map

package/dist/esm/stateManagement/segmentation/polySeg/Labelmap/labelmapComputationStrategies.js.map

@@ -0,0 +1 @@
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package/dist/esm/stateManagement/segmentation/polySeg/Surface/computeAndAddSurfaceRepresentation.js

@@ -0,0 +1,8 @@
+import { SegmentationRepresentations } from '../../../../enums';
+import { computeAndAddRepresentation } from '../computeAndAddRepresentation';
+import { computeSurfaceData } from './surfaceComputationStrategies';
+import { updateSurfaceData } from './updateSurfaceData';
+export function computeAndAddSurfaceRepresentation(segmentationId, options = {}) {
+    return computeAndAddRepresentation(segmentationId, SegmentationRepresentations.Surface, () => computeSurfaceData(segmentationId, options), () => updateSurfaceData(segmentationId));
+}
+//# sourceMappingURL=computeAndAddSurfaceRepresentation.js.map

package/dist/esm/stateManagement/segmentation/polySeg/Surface/computeAndAddSurfaceRepresentation.js.map

@@ -0,0 +1 @@
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package/dist/esm/stateManagement/segmentation/polySeg/Surface/convertContourToSurface.js

@@ -0,0 +1,37 @@
+import { Enums, eventTarget, triggerEvent } from '@cornerstonejs/core';
+import { getWebWorkerManager } from '@cornerstonejs/core';
+import { getAnnotation } from '../../../annotation/annotationState';
+import { WorkerTypes } from '../../../../enums';
+const workerManager = getWebWorkerManager();
+const triggerWorkerProgress = (eventTarget, progress) => {
+    triggerEvent(eventTarget, Enums.Events.WEB_WORKER_PROGRESS, {
+        progress,
+        type: WorkerTypes.POLYSEG_CONTOUR_TO_SURFACE,
+    });
+};
+export async function convertContourToSurface(contourRepresentationData, segmentIndex) {
+    const { annotationUIDsMap } = contourRepresentationData;
+    const polylines = [];
+    const numPointsArray = [];
+    const annotationUIDs = annotationUIDsMap.get(segmentIndex);
+    for (const annotationUID of annotationUIDs) {
+        const annotation = getAnnotation(annotationUID);
+        const { polyline } = annotation.data.contour;
+        numPointsArray.push(polyline.length);
+        polyline.forEach((polyline) => polylines.push(...polyline));
+    }
+    triggerWorkerProgress(eventTarget, 0);
+    const results = await workerManager.executeTask('polySeg', 'convertContourToSurface', {
+        polylines,
+        numPointsArray,
+    }, {
+        callbacks: [
+            (progress) => {
+                triggerWorkerProgress(eventTarget, progress);
+            },
+        ],
+    });
+    triggerWorkerProgress(eventTarget, 1);
+    return results;
+}
+//# sourceMappingURL=convertContourToSurface.js.map

package/dist/esm/stateManagement/segmentation/polySeg/Surface/convertContourToSurface.js.map

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package/dist/esm/stateManagement/segmentation/polySeg/Surface/convertLabelmapToSurface.js

@@ -0,0 +1,45 @@
+import { cache, eventTarget, triggerEvent, Enums, } from '@cornerstonejs/core';
+import { getWebWorkerManager } from '@cornerstonejs/core';
+import { computeVolumeSegmentationFromStack } from '../../convertStackToVolumeSegmentation';
+import { WorkerTypes } from '../../../../enums';
+const workerManager = getWebWorkerManager();
+const triggerWorkerProgress = (eventTarget, progress) => {
+    triggerEvent(eventTarget, Enums.Events.WEB_WORKER_PROGRESS, {
+        progress,
+        type: WorkerTypes.POLYSEG_LABELMAP_TO_SURFACE,
+    });
+};
+export async function convertLabelmapToSurface(labelmapRepresentationData, segmentIndex, isVolume = true) {
+    let volumeId;
+    if (isVolume) {
+        volumeId = labelmapRepresentationData
+            .volumeId;
+    }
+    else {
+        const { imageIdReferenceMap } = labelmapRepresentationData;
+        ({ volumeId } = await computeVolumeSegmentationFromStack({
+            imageIdReferenceMap,
+        }));
+    }
+    const volume = cache.getVolume(volumeId);
+    const scalarData = volume.getScalarData();
+    const { dimensions, spacing, origin, direction } = volume;
+    triggerWorkerProgress(eventTarget, 0);
+    const results = await workerManager.executeTask('polySeg', 'convertLabelmapToSurface', {
+        scalarData,
+        dimensions,
+        spacing,
+        origin,
+        direction,
+        segmentIndex,
+    }, {
+        callbacks: [
+            (progress) => {
+                triggerWorkerProgress(eventTarget, progress);
+            },
+        ],
+    });
+    triggerWorkerProgress(eventTarget, 1);
+    return results;
+}
+//# sourceMappingURL=convertLabelmapToSurface.js.map

package/dist/esm/stateManagement/segmentation/polySeg/Surface/convertLabelmapToSurface.js.map

@@ -0,0 +1 @@
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package/dist/esm/stateManagement/segmentation/polySeg/Surface/createAndCacheSurfacesFromRaw.js

@@ -0,0 +1,41 @@
+import { Enums, geometryLoader } from '@cornerstonejs/core';
+import { getColorForSegmentIndex } from '../../config/segmentationColor';
+import { findSegmentationRepresentationByUID, getSegmentation, } from '../../segmentationState';
+export async function createAndCacheSurfacesFromRaw(segmentationId, rawSurfacesData, options = {}) {
+    let segmentationRepresentation, toolGroupId;
+    if (options.segmentationRepresentationUID) {
+        ({ segmentationRepresentation, toolGroupId } =
+            findSegmentationRepresentationByUID(options.segmentationRepresentationUID));
+    }
+    const segmentation = getSegmentation(segmentationId);
+    const geometryIds = new Map();
+    const promises = Object.keys(rawSurfacesData).map(async (index) => {
+        const rawSurfaceData = rawSurfacesData[index];
+        const segmentIndex = rawSurfaceData.segmentIndex;
+        const color = segmentationRepresentation;
+        getColorForSegmentIndex(toolGroupId, segmentationRepresentation.segmentationRepresentationUID, segmentIndex).slice(0, 3);
+        if (!color) {
+            throw new Error('No color found for segment index, unable to create surface');
+        }
+        const closedSurface = {
+            id: `segmentation_${segmentation.segmentationId}_surface_${segmentIndex}`,
+            color,
+            frameOfReferenceUID: 'test-frameOfReferenceUID',
+            data: {
+                points: rawSurfaceData.data.points,
+                polys: rawSurfaceData.data.polys,
+            },
+        };
+        const geometryId = closedSurface.id;
+        geometryIds.set(segmentIndex, geometryId);
+        return geometryLoader.createAndCacheGeometry(geometryId, {
+            type: Enums.GeometryType.SURFACE,
+            geometryData: closedSurface,
+        });
+    });
+    await Promise.all(promises);
+    return {
+        geometryIds,
+    };
+}
+//# sourceMappingURL=createAndCacheSurfacesFromRaw.js.map