@cornerstonejs/tools 2.0.0-beta.20 → 2.0.0-beta.22

package/dist/esm/utilities/voi/windowlevel/extractWindowLevelRegionToolData.js

@@ -11,20 +11,14 @@ function extractWindowLevelRegionToolData(viewport) {
 function extractImageDataVolume(viewport) {
     const { scalarData, width, height } = csUtils.getCurrentVolumeViewportSlice(viewport);
     const { min: minPixelValue, max: maxPixelValue } = csUtils.getMinMax(scalarData);
-    const volumeId = viewport.getVolumeId();
-    const volume = cache.getVolume(volumeId);
-    const { metadata, cornerstoneImageMetaData } = volume;
-    const { Rows: rows, Columns: columns } = metadata;
-    const { color } = cornerstoneImageMetaData;
     return {
         scalarData,
-        width,
-        height,
         minPixelValue,
         maxPixelValue,
-        rows,
-        columns,
-        color,
+        width,
+        height,
+        rows: width,
+        columns: height,
     };
 }
 function extractImageDataStack(viewport) {

package/dist/esm/widgets/types/index.d.ts

@@ -1,2 +1,2 @@
-export { WidgetProps } from './WidgetProps';
-export { WidgetSize } from './WidgetSize';
+export type { WidgetProps } from './WidgetProps';
+export type { WidgetSize } from './WidgetSize';

package/dist/esm/workers/polySegConverters.js

@@ -1,14 +1,13 @@
 import { expose } from 'comlink';
+import { utilities } from '@cornerstonejs/core';
 import vtkImageData from '@kitware/vtk.js/Common/DataModel/ImageData';
 import vtkDataArray from '@kitware/vtk.js/Common/Core/DataArray';
 import ICRPolySeg from '@icr/polyseg-wasm';
-import { utilities } from '@cornerstonejs/core';
 import vtkPlane from '@kitware/vtk.js/Common/DataModel/Plane';
 import vtkPolyData from '@kitware/vtk.js/Common/DataModel/PolyData';
 import vtkContourLoopExtraction from '@kitware/vtk.js/Filters/General/ContourLoopExtraction';
 import vtkCutter from '@kitware/vtk.js/Filters/Core/Cutter';
 import { getBoundingBoxAroundShapeWorld } from '../utilities/boundingBox';
-import { pointInShapeCallback } from '../utilities';
 import { containsPoint, getAABB, projectTo2D, } from '../utilities/math/polyline';
 import { isPlaneIntersectingAABB } from '../utilities/planar';
 const polySegConverters = {
@@ -57,7 +56,10 @@ const polySegConverters = {
             updateProgress: progressCallback,
         });
         const { segmentIndices, scalarData, annotationUIDsInSegmentMap, dimensions, origin, direction, spacing, } = args;
-        const segmentationVoxelManager = utilities.VoxelManager.createVolumeVoxelManager(dimensions, scalarData);
+        const segmentationVoxelManager = utilities.VoxelManager.createScalarVolumeVoxelManager({
+            dimensions,
+            scalarData,
+        });
         const imageData = vtkImageData.newInstance();
         imageData.setDimensions(dimensions);
         imageData.setOrigin(origin);
@@ -95,19 +97,27 @@ const polySegConverters = {
                 });
                 const firstDim = (sharedDimensionIndex + 1) % 3;
                 const secondDim = (sharedDimensionIndex + 2) % 3;
-                pointInShapeCallback(imageData, (pointLPS) => {
-                    const point2D = [pointLPS[firstDim], pointLPS[secondDim]];
-                    const isInside = containsPoint(projectedPolyline, point2D, {
-                        holes,
-                    });
-                    return isInside;
-                }, ({ pointIJK }) => {
+                const voxels = utilities.VoxelManager.createScalarVolumeVoxelManager({
+                    dimensions,
+                    scalarData,
+                });
+                voxels.forEach(({ pointIJK }) => {
                     segmentationVoxelManager.setAtIJKPoint(pointIJK, index);
-                }, [
-                    [iMin, iMax],
-                    [jMin, jMax],
-                    [kMin, kMax],
-                ]);
+                }, {
+                    imageData,
+                    isInObject: (pointLPS) => {
+                        const point2D = [pointLPS[firstDim], pointLPS[secondDim]];
+                        const isInside = containsPoint(projectedPolyline, point2D, {
+                            holes,
+                        });
+                        return isInside;
+                    },
+                    boundsIJK: [
+                        [iMin, iMax],
+                        [jMin, jMax],
+                        [kMin, kMax],
+                    ],
+                });
             }
         }
         return segmentationVoxelManager.scalarData;
@@ -122,7 +132,10 @@ const polySegConverters = {
         const segmentationVoxelManagers = new Map();
         segmentationsInfo.forEach((segmentationInfo, referencedImageId) => {
             const { dimensions, scalarData, direction, spacing, origin } = segmentationInfo;
-            const manager = utilities.VoxelManager.createVolumeVoxelManager(dimensions, scalarData);
+            const manager = utilities.VoxelManager.createScalarVolumeVoxelManager({
+                dimensions,
+                scalarData,
+            });
             const imageData = vtkImageData.newInstance();
             imageData.setDimensions(dimensions);
             imageData.setOrigin(origin);
@@ -163,19 +176,27 @@ const polySegConverters = {
                 });
                 const firstDim = (sharedDimensionIndex + 1) % 3;
                 const secondDim = (sharedDimensionIndex + 2) % 3;
-                pointInShapeCallback(imageData, (pointLPS) => {
-                    const point2D = [pointLPS[firstDim], pointLPS[secondDim]];
-                    const isInside = containsPoint(projectedPolyline, point2D, {
-                        holes,
-                    });
-                    return isInside;
-                }, ({ pointIJK }) => {
+                const voxels = utilities.VoxelManager.createScalarVolumeVoxelManager({
+                    dimensions: imageData.getDimensions(),
+                    scalarData: imageData.getPointData().getScalars().getData(),
+                });
+                voxels.forEach(({ pointIJK }) => {
                     segmentationVoxelManager.setAtIJKPoint(pointIJK, index);
-                }, [
-                    [iMin, iMax],
-                    [jMin, jMax],
-                    [kMin, kMax],
-                ]);
+                }, {
+                    imageData,
+                    isInObject: (pointLPS) => {
+                        const point2D = [pointLPS[firstDim], pointLPS[secondDim]];
+                        const isInside = containsPoint(projectedPolyline, point2D, {
+                            holes,
+                        });
+                        return isInside;
+                    },
+                    boundsIJK: [
+                        [iMin, iMax],
+                        [jMin, jMax],
+                        [kMin, kMax],
+                    ],
+                });
             }
         }
         segmentationsInfo.forEach((segmentationInfo, referencedImageId) => {
@@ -216,7 +237,12 @@ const polySegConverters = {
         });
         targetImageData.getPointData().setScalars(scalarArray);
         targetImageData.modified();
-        const segmentationVoxelManager = utilities.VoxelManager.createVolumeVoxelManager(args.dimensions, targetImageData.getPointData().getScalars().getData());
+        const { dimensions } = args;
+        const scalarData = targetImageData.getPointData().getScalars().getData();
+        const segmentationVoxelManager = utilities.VoxelManager.createScalarVolumeVoxelManager({
+            dimensions,
+            scalarData,
+        });
         const outputVolumesInfo = results.map((result) => {
             const { data, dimensions, direction, origin, spacing } = result;
             const volume = vtkImageData.newInstance();
@@ -231,7 +257,10 @@ const polySegConverters = {
             });
             volume.getPointData().setScalars(scalarArray);
             volume.modified();
-            const voxelManager = utilities.VoxelManager.createVolumeVoxelManager(dimensions, data);
+            const voxelManager = utilities.VoxelManager.createScalarVolumeVoxelManager({
+                dimensions,
+                scalarData: data,
+            });
             const extent = volume.getExtent();
             return {
                 volume,
@@ -241,7 +270,11 @@ const polySegConverters = {
                 segmentIndex: result.segmentIndex,
             };
         });
-        pointInShapeCallback(targetImageData, () => true, ({ pointIJK, pointLPS }) => {
+        const voxels = utilities.VoxelManager.createScalarVolumeVoxelManager({
+            dimensions: targetImageData.getDimensions(),
+            scalarData: targetImageData.getPointData().getScalars().getData(),
+        });
+        voxels.forEach(({ pointIJK, pointLPS }) => {
             try {
                 for (const volumeInfo of outputVolumesInfo) {
                     const { volume, extent, voxelManager, segmentIndex } = volumeInfo;
@@ -264,7 +297,7 @@ const polySegConverters = {
             }
             catch (error) {
             }
-        });
+        }, { imageData: targetImageData });
         return segmentationVoxelManager.scalarData;
     },
     getSurfacesAABBs({ surfacesInfo }) {

package/dist/umd/78.index.js

@@ -1,3 +1,3 @@
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