npm - @cornerstonejs/tools - Versions diffs - 1.68.0 → 1.68.2 - Mend

@cornerstonejs/tools 1.68.0 → 1.68.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (128) hide show

package/dist/esm/tools/annotation/PlanarFreehandROITool.js CHANGED Viewed

@@ -21,6 +21,7 @@ import pointInShapeCallback from '../../utilities/pointInShapeCallback';
 import { isViewportPreScaled } from '../../utilities/viewport/isViewportPreScaled';
 import { getModalityUnit } from '../../utilities/getModalityUnit';
 import { BasicStatsCalculator } from '../../utilities/math/basic';
+import calculatePerimeter from '../../utilities/contours/calculatePerimeter';
 import ContourSegmentationBaseTool from '../base/ContourSegmentationBaseTool';
 import { KeyboardBindings, ChangeTypes } from '../../enums';
 const { pointCanProjectOnLine } = polyline;
@@ -56,7 +57,7 @@ class PlanarFreehandROITool extends ContourSegmentationBaseTool {
                 enabled: false,
                 epsilon: 0.1,
             },
-            calculateStats: false,
+            calculateStats: true,
             getTextLines: defaultGetTextLines,
             statsCalculator: BasicStatsCalculator,
         },
@@ -94,6 +95,7 @@ class PlanarFreehandROITool extends ContourSegmentationBaseTool {
             else {
                 this.activateOpenContourEdit(evt, annotation, viewportIdsToRender);
             }
+            evt.preventDefault();
         };
         this.isPointNearTool = (element, annotation, canvasCoords, proximity) => {
             const enabledElement = getEnabledElement(element);
@@ -133,7 +135,7 @@ class PlanarFreehandROITool extends ContourSegmentationBaseTool {
         this._calculateCachedStats = (annotation, viewport, renderingEngine, enabledElement) => {
             const { data } = annotation;
             const { cachedStats } = data;
-            const { polyline: points } = data.contour;
+            const { polyline: points, closed } = data.contour;
             const targetIds = Object.keys(cachedStats);
             for (let i = 0; i < targetIds.length; i++) {
                 const targetId = targetIds[i];
@@ -234,6 +236,7 @@ class PlanarFreehandROITool extends ContourSegmentationBaseTool {
                 cachedStats[targetId] = {
                     Modality: metadata.Modality,
                     area,
+                    perimeter: calculatePerimeter(canvasCoordinates, closed),
                     mean: stats.mean?.value,
                     max: stats.max?.value,
                     stdDev: stats.stdDev?.value,
@@ -343,7 +346,7 @@ class PlanarFreehandROITool extends ContourSegmentationBaseTool {
         const onInterpolationComplete = (annotation) => {
             annotation.data.handles.points.length = 0;
         };
-        return csUtils.deepMerge(contourAnnotation, {
+        const annotation = csUtils.deepMerge(contourAnnotation, {
             data: {
                 contour: {
                     polyline: [[...worldPos]],
@@ -353,6 +356,7 @@ class PlanarFreehandROITool extends ContourSegmentationBaseTool {
             },
             onInterpolationComplete,
         });
+        return annotation;
     }
     getAnnotationStyle(context) {
         return super.getAnnotationStyle(context);
@@ -424,7 +428,7 @@ class PlanarFreehandROITool extends ContourSegmentationBaseTool {
 }
 function defaultGetTextLines(data, targetId) {
     const cachedVolumeStats = data.cachedStats[targetId];
-    const { area, mean, stdDev, max, isEmptyArea, areaUnit, modalityUnit } = cachedVolumeStats || {};
+    const { area, mean, stdDev, perimeter, max, isEmptyArea, areaUnit, modalityUnit, } = cachedVolumeStats || {};
     const textLines = [];
     if (area) {
         const areaLine = isEmptyArea
@@ -441,6 +445,9 @@ function defaultGetTextLines(data, targetId) {
     if (stdDev) {
         textLines.push(`Std Dev: ${roundNumber(stdDev)} ${modalityUnit}`);
     }
+    if (perimeter) {
+        textLines.push(`Perimeter: ${roundNumber(perimeter)} ${modalityUnit}`);
+    }
     return textLines;
 }
 PlanarFreehandROITool.toolName = 'PlanarFreehandROI';

package/dist/esm/tools/annotation/PlanarFreehandROITool.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/esm/tools/segmentation/BrushTool.js CHANGED Viewed

@@ -209,7 +209,7 @@ class BrushTool extends BaseTool {
             const firstVolumeActorUID = actors[0].uid;
             return {
                 volumeId,
-                referencedVolumeId: firstVolumeActorUID,
+                referencedVolumeId: labelmapData.referencedVolumeId ?? firstVolumeActorUID,
                 segmentsLocked,
                 segmentationRepresentationUID,
             };

package/dist/esm/tools/segmentation/BrushTool.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/esm/tools/segmentation/strategies/BrushStrategy.js CHANGED Viewed

@@ -1,8 +1,7 @@
-import { cache, utilities as csUtils } from '@cornerstonejs/core';
+import { utilities as csUtils } from '@cornerstonejs/core';
 import { triggerSegmentationDataModified } from '../../../stateManagement/segmentation/triggerSegmentationEvents';
 import compositions from './compositions';
 import { getStrategyData } from './utils/getStrategyData';
-import { isVolumeSegmentation } from './utils/stackVolumeCheck';
 import { StrategyCallbacks } from '../../../enums';
 const { VoxelManager } = csUtils;
 export default class BrushStrategy {
@@ -82,17 +81,6 @@ export default class BrushStrategy {
             console.warn('No data found for BrushStrategy');
             return operationData.preview;
         }
-        if (isVolumeSegmentation(operationData, viewport)) {
-            const { referencedVolumeId, volumeId } = operationData;
-            const segmentation = cache.getVolume(volumeId);
-            if (referencedVolumeId) {
-                const imageVolume = cache.getVolume(referencedVolumeId);
-                if (!csUtils.isEqual(segmentation.dimensions, imageVolume.dimensions) ||
-                    !csUtils.isEqual(segmentation.direction, imageVolume.direction)) {
-                    throw new Error('Only source data the same dimensions/size/orientation as the segmentation currently supported.');
-                }
-            }
-        }
         const { imageVoxelManager, segmentationVoxelManager, segmentationImageData, } = data;
         const previewVoxelManager = operationData.preview?.previewVoxelManager ||
             VoxelManager.createHistoryVoxelManager(segmentationVoxelManager);

package/dist/esm/tools/segmentation/strategies/BrushStrategy.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/esm/utilities/cine/playClip.js CHANGED Viewed

@@ -17,6 +17,9 @@ function playClip(element, playClipOptions) {
     if (!enabledElement) {
         throw new Error('playClip: element must be a valid Cornerstone enabled element');
     }
+    if (!playClipOptions) {
+        playClipOptions = {};
+    }
     playClipOptions.dynamicCineEnabled =
         playClipOptions.dynamicCineEnabled ?? true;
     const { viewport } = enabledElement;

package/dist/esm/utilities/cine/playClip.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/esm/utilities/contours/calculatePerimeter.js ADDED Viewed

@@ -0,0 +1,17 @@
+function calculatePerimeter(polyline, closed) {
+    let perimeter = 0;
+    for (let i = 0; i < polyline.length - 1; i++) {
+        const point1 = polyline[i];
+        const point2 = polyline[i + 1];
+        perimeter += Math.sqrt(Math.pow(point2[0] - point1[0], 2) + Math.pow(point2[1] - point1[1], 2));
+    }
+    if (closed) {
+        const firstPoint = polyline[0];
+        const lastPoint = polyline[polyline.length - 1];
+        perimeter += Math.sqrt(Math.pow(lastPoint[0] - firstPoint[0], 2) +
+            Math.pow(lastPoint[1] - firstPoint[1], 2));
+    }
+    return perimeter;
+}
+export default calculatePerimeter;
+//# sourceMappingURL=calculatePerimeter.js.map

package/dist/esm/utilities/contours/calculatePerimeter.js.map ADDED Viewed

@@ -0,0 +1 @@

+ {"version":3,"file":"calculatePerimeter.js","sourceRoot":"","sources":["../../../../src/utilities/contours/calculatePerimeter.ts"],"names":[],"mappings":"AAOA,SAAS,kBAAkB,CAAC,QAAoB,EAAE,MAAe;IAC/D,IAAI,SAAS,GAAG,CAAC,CAAC;IAElB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,QAAQ,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC,EAAE,EAAE;QAC5C,MAAM,MAAM,GAAG,QAAQ,CAAC,CAAC,CAAC,CAAC;QAC3B,MAAM,MAAM,GAAG,QAAQ,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC;QAC/B,SAAS,IAAI,IAAI,CAAC,IAAI,CACpB,IAAI,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC,CAAC,GAAG,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC,CAAC,GAAG,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CACxE,CAAC;KACH;IAED,IAAI,MAAM,EAAE;QACV,MAAM,UAAU,GAAG,QAAQ,CAAC,CAAC,CAAC,CAAC;QAC/B,MAAM,SAAS,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC;QAChD,SAAS,IAAI,IAAI,CAAC,IAAI,CACpB,IAAI,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC,CAAC,GAAG,UAAU,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC;YACvC,IAAI,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC,CAAC,GAAG,UAAU,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAC5C,CAAC;KACH;IAED,OAAO,SAAS,CAAC;AACnB,CAAC;AAED,eAAe,kBAAkB,CAAC"}

package/dist/esm/utilities/contours/index.js CHANGED Viewed

@@ -10,5 +10,6 @@ import updateContourPolyline from './updateContourPolyline';
 import acceptAutogeneratedInterpolations from './interpolation/acceptAutogeneratedInterpolations';
 import * as interpolation from './interpolation';
 import findHandlePolylineIndex from './findHandlePolylineIndex';
-export { areCoplanarContours, contourFinder, getDeduplicatedVTKPolyDataPoints, detectContourHoles, generateContourSetsFromLabelmap, AnnotationToPointData, getContourHolesDataWorld, getContourHolesDataCanvas, updateContourPolyline, interpolation, acceptAutogeneratedInterpolations, findHandlePolylineIndex, };
+import calculatePerimeter from './calculatePerimeter';
+export { areCoplanarContours, contourFinder, getDeduplicatedVTKPolyDataPoints, detectContourHoles, generateContourSetsFromLabelmap, AnnotationToPointData, getContourHolesDataWorld, getContourHolesDataCanvas, updateContourPolyline, interpolation, acceptAutogeneratedInterpolations, findHandlePolylineIndex, calculatePerimeter, };
 //# sourceMappingURL=index.js.map

package/dist/esm/utilities/contours/index.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"index.js","sourceRoot":"","sources":["../../../../src/utilities/contours/index.ts"],"names":[],"mappings":"AAAA,OAAO,mBAAmB,MAAM,uBAAuB,CAAC;AACxD,OAAO,aAAa,MAAM,iBAAiB,CAAC;AAC5C,OAAO,EAAE,gCAAgC,EAAE,MAAM,oCAAoC,CAAC;AACtF,OAAO,kBAAkB,MAAM,sBAAsB,CAAC;AACtD,OAAO,EAAE,+BAA+B,EAAE,MAAM,mCAAmC,CAAC;AACpF,OAAO,qBAAqB,MAAM,yBAAyB,CAAC;AAC5D,OAAO,wBAAwB,MAAM,4BAA4B,CAAC;AAClE,OAAO,yBAAyB,MAAM,6BAA6B,CAAC;AACpE,OAAO,qBAAqB,MAAM,yBAAyB,CAAC;AAC5D,OAAO,iCAAiC,MAAM,mDAAmD,CAAC;AAClG,OAAO,KAAK,aAAa,MAAM,iBAAiB,CAAC;AACjD,OAAO,uBAAuB,MAAM,2BAA2B,CAAC;~~AAEhE~~,OAAO,EACL,mBAAmB,EACnB,aAAa,EACb,gCAAgC,EAChC,kBAAkB,EAClB,+BAA+B,EAC/B,qBAAqB,EACrB,wBAAwB,EACxB,yBAAyB,EACzB,qBAAqB,EACrB,aAAa,EACb,iCAAiC,EACjC,uBAAuB,~~GACxB~~,CAAC"}
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package/dist/esm/utilities/getCalibratedUnits.js CHANGED Viewed

@@ -79,7 +79,7 @@ const getCalibratedLengthUnitsAndScale = (image, handles) => {
             return { units, areaUnits, scale };
         }
         regions = regions.filter((region) => SUPPORTED_REGION_DATA_TYPES.includes(region.regionDataType) &&
-            SUPPORTED_LENGTH_VARIANT.includes(`${region.physicalUnitXDirection},${region.physicalUnitYDirection}`));
+            SUPPORTED_LENGTH_VARIANT.includes(`${region.physicalUnitsXDirection},${region.physicalUnitsYDirection}`));
         if (!regions.length) {
             return { units: PIXEL_UNITS, areaUnits: PIXEL_UNITS + SQUARE, scale };
         }
@@ -99,7 +99,12 @@ const getCalibratedLengthUnitsAndScale = (image, handles) => {
     else if (calibration.scale) {
         scale = calibration.scale;
     }
-    const types = [CalibrationTypes.ERMF, CalibrationTypes.USER, CalibrationTypes.ERROR, CalibrationTypes.PROJECTION];
+    const types = [
+        CalibrationTypes.ERMF,
+        CalibrationTypes.USER,
+        CalibrationTypes.ERROR,
+        CalibrationTypes.PROJECTION,
+    ];
     if (types.includes(calibration?.type)) {
         calibrationType = calibration.type;
     }
@@ -121,7 +126,7 @@ const getCalibratedProbeUnitsAndValue = (image, handles) => {
     }
     if (calibration.sequenceOfUltrasoundRegions) {
         const supportedRegionsMetadata = calibration.sequenceOfUltrasoundRegions.filter((region) => SUPPORTED_REGION_DATA_TYPES.includes(region.regionDataType) &&
-            SUPPORTED_PROBE_VARIANT.includes(`${region.physicalUnitXDirection},${region.physicalUnitYDirection}`));
+            SUPPORTED_PROBE_VARIANT.includes(`${region.physicalUnitsXDirection},${region.physicalUnitsYDirection}`));
         if (!supportedRegionsMetadata?.length) {
             return { units, values };
         }
@@ -141,8 +146,8 @@ const getCalibratedProbeUnitsAndValue = (image, handles) => {
         calibrationType = 'US Region';
         values = [xValue, yValue];
         units = [
-            UNIT_MAPPING[region.physicalUnitXDirection],
-            UNIT_MAPPING[region.physicalUnitYDirection],
+            UNIT_MAPPING[region.physicalUnitsXDirection],
+            UNIT_MAPPING[region.physicalUnitsYDirection],
         ];
     }
     return {

package/dist/esm/utilities/getCalibratedUnits.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ 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package/dist/esm/utilities/segmentation/rectangleROIThresholdVolumeByRange.js CHANGED Viewed

@@ -15,6 +15,7 @@ function rectangleROIThresholdVolumeByRange(annotationUIDs, segmentationVolume,
         }
     }
     const outputSegmentationVolume = thresholdVolumeByRange(segmentationVolume, thresholdVolumeInformation, { ...options, boundsIJK });
+    outputSegmentationVolume.modified();
     return outputSegmentationVolume;
 }
 function _validateAnnotations(annotations) {

package/dist/esm/utilities/segmentation/rectangleROIThresholdVolumeByRange.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"rectangleROIThresholdVolumeByRange.js","sourceRoot":"","sources":["../../../../src/utilities/segmentation/rectangleROIThresholdVolumeByRange.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,KAAK,EAAE,MAAM,kCAAkC,CAAC;AACzD,OAAO,EACL,iCAAiC,EACjC,yBAAyB,GAC1B,MAAM,aAAa,CAAC;AAErB,OAAO,sBAAsB,MAAM,0BAA0B,CAAC;AAC9D,OAAO,oCAAoC,MAAM,0DAA0D,CAAC;~~AA+B5G~~,SAAS,kCAAkC,CACzC,cAAwB,EACxB,kBAAsC,EACtC,0BAAkD,EAClD,OAAyB;IAEzB,MAAM,WAAW,GAAG,cAAc,CAAC,GAAG,CAAC,CAAC,aAAa,EAAE,EAAE;QACvD,OAAO,KAAK,CAAC,aAAa,CAAC,aAAa,CAAC,CAAC;IAC5C,CAAC,CAAC,CAAC;IAEH,oBAAoB,CAAC,WAAW,CAAC,CAAC;IAElC,IAAI,SAAS,CAAC;IACd,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,0BAA0B,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;QAE1D,MAAM,UAAU,GACd,0BAA0B,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,aAAa,EAAE,CAAC,MAAM,CAAC;QAC9D,IAAI,UAAU,KAAK,kBAAkB,CAAC,aAAa,EAAE,CAAC,MAAM,IAAI,CAAC,KAAK,CAAC,EAAE;YACvE,SAAS,GAAG,oCAAoC,CAC9C,WAAW,EACX,0BAA0B,CAAC,CAAC,CAAC,CAAC,MAAM,EACpC,OAAO,CACR,CAAC;SACH;KACF;IAED,MAAM,wBAAwB,GAAG,sBAAsB,CACrD,kBAAkB,EAClB,0BAA0B,EAC1B,EAAE,GAAG,OAAO,EAAE,SAAS,EAAE,CAC1B,CAAC;IAEF,OAAO,wBAAwB,CAAC;AAClC,CAAC;AAED,SAAS,oBAAoB,CAAC,WAAW;IACvC,MAAM,cAAc,GAAG;QACrB,yBAAyB,CAAC,QAAQ;QAClC,iCAAiC,CAAC,QAAQ;KAC3C,CAAC;IAEF,KAAK,MAAM,UAAU,IAAI,WAAW,EAAE;QACpC,MAAM,IAAI,GAAG,UAAU,CAAC,QAAQ,CAAC,QAAQ,CAAC;QAC1C,IAAI,CAAC,cAAc,CAAC,QAAQ,CAAC,IAAI,CAAC,EAAE;YAClC,MAAM,IAAI,KAAK,CACb,sHAAsH,CACvH,CAAC;SACH;KACF;AACH,CAAC;AAED,eAAe,kCAAkC,CAAC"}
1	+ {"version":3,"file":"rectangleROIThresholdVolumeByRange.js","sourceRoot":"","sources":["../../../../src/utilities/segmentation/rectangleROIThresholdVolumeByRange.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,KAAK,EAAE,MAAM,kCAAkC,CAAC;AACzD,OAAO,EACL,iCAAiC,EACjC,yBAAyB,GAC1B,MAAM,aAAa,CAAC;AAErB,OAAO,sBAAsB,MAAM,0BAA0B,CAAC;AAC9D,OAAO,oCAAoC,MAAM,0DAA0D,CAAC;AAgC5G,SAAS,kCAAkC,CACzC,cAAwB,EACxB,kBAAsC,EACtC,0BAAkD,EAClD,OAAyB;IAEzB,MAAM,WAAW,GAAG,cAAc,CAAC,GAAG,CAAC,CAAC,aAAa,EAAE,EAAE;QACvD,OAAO,KAAK,CAAC,aAAa,CAAC,aAAa,CAAC,CAAC;IAC5C,CAAC,CAAC,CAAC;IAEH,oBAAoB,CAAC,WAAW,CAAC,CAAC;IAElC,IAAI,SAAS,CAAC;IACd,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,0BAA0B,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;QAE1D,MAAM,UAAU,GACd,0BAA0B,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,aAAa,EAAE,CAAC,MAAM,CAAC;QAC9D,IAAI,UAAU,KAAK,kBAAkB,CAAC,aAAa,EAAE,CAAC,MAAM,IAAI,CAAC,KAAK,CAAC,EAAE;YACvE,SAAS,GAAG,oCAAoC,CAC9C,WAAW,EACX,0BAA0B,CAAC,CAAC,CAAC,CAAC,MAAM,EACpC,OAAO,CACR,CAAC;SACH;KACF;IAED,MAAM,wBAAwB,GAAG,sBAAsB,CACrD,kBAAkB,EAClB,0BAA0B,EAC1B,EAAE,GAAG,OAAO,EAAE,SAAS,EAAE,CAC1B,CAAC;IAEF,wBAAwB,CAAC,QAAQ,EAAE,CAAC;IAEpC,OAAO,wBAAwB,CAAC;AAClC,CAAC;AAED,SAAS,oBAAoB,CAAC,WAAW;IACvC,MAAM,cAAc,GAAG;QACrB,yBAAyB,CAAC,QAAQ;QAClC,iCAAiC,CAAC,QAAQ;KAC3C,CAAC;IAEF,KAAK,MAAM,UAAU,IAAI,WAAW,EAAE;QACpC,MAAM,IAAI,GAAG,UAAU,CAAC,QAAQ,CAAC,QAAQ,CAAC;QAC1C,IAAI,CAAC,cAAc,CAAC,QAAQ,CAAC,IAAI,CAAC,EAAE;YAClC,MAAM,IAAI,KAAK,CACb,sHAAsH,CACvH,CAAC;SACH;KACF;AACH,CAAC;AAED,eAAe,kCAAkC,CAAC"}

package/dist/esm/utilities/segmentation/thresholdVolumeByRange.js CHANGED Viewed

@@ -60,7 +60,7 @@ function thresholdVolumeByRange(segmentationVolume, thresholdVolumeInformation,
             }
         }
         if (insert) {
-            scalarData[index] = 1;
+            scalarData[index] = options.segmentIndex || 1;
         }
     };
     pointInShapeCallback(segmentationImageData, () => true, callback, boundsIJK);

package/dist/esm/utilities/segmentation/thresholdVolumeByRange.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/esm/utilities/segmentation/triggerSegmentationRender.js CHANGED Viewed

@@ -1,7 +1,7 @@
 import { triggerEvent, eventTarget, getRenderingEngine, Enums, } from '@cornerstonejs/core';
 import { Events as csToolsEvents } from '../../enums';
 import { getToolGroup, getToolGroupForViewport, } from '../../store/ToolGroupManager';
-import SegmentationDisplayTool from '../../tools/displayTools/SegmentationDisplayTool';
+import { SegmentationDisplayTool } from '../../tools';
 class SegmentationRenderingEngine {
     constructor() {
         this._needsRender = new Set();

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