@cornerstonejs/tools 1.57.1 → 1.58.0

package/dist/cjs/drawingSvg/drawPath.js

@@ -24,7 +24,7 @@ function drawPath(svgDrawingHelper, annotationUID, pathUID, points, options) {
         for (let j = 0; j < numPoints; j++) {
             const point = points[j];
             const cmd = j ? 'L' : 'M';
-            pointsAttribute += `${cmd} ${point[0]},${point[1]} `;
+            pointsAttribute += `${cmd} ${point[0].toFixed(1)}, ${point[1].toFixed(1)} `;
         }
         if (closePath) {
             pointsAttribute += 'Z ';

package/dist/cjs/drawingSvg/drawPath.js.map

@@ -1 +1 @@
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+{"version":3,"file":"drawPath.js","sourceRoot":"","sources":["../../../src/drawingSvg/drawPath.ts"],"names":[],"mappings":";;;;;AACA,0DAAkC;AAClC,wFAAgE;AAChE,0FAAkE;AASlE,SAAwB,QAAQ,CAC9B,gBAAkC,EAClC,aAAqB,EACrB,OAAe,EACf,MAAyC,EACzC,OAQC;IAID,MAAM,YAAY,GAChB,MAAM,CAAC,MAAM,IAAI,MAAM,CAAC,CAAC,CAAC,CAAC,MAAM,IAAI,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;IAEnE,MAAM,YAAY,GAAG,YAAY,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC;IACtD,MAAM,EACJ,KAAK,GAAG,YAAY,EACpB,KAAK,GAAG,EAAE,EACV,SAAS,GAAG,MAAM,EAClB,WAAW,GAAG,CAAC,EACf,SAAS,EACT,QAAQ,EACR,SAAS,GAAG,KAAK,GAClB,GAAG,OAAO,CAAC;IAGZ,MAAM,WAAW,GAAG,SAAS,IAAI,KAAK,CAAC;IAEvC,MAAM,KAAK,GAAG,4BAA4B,CAAC;IAC3C,MAAM,WAAW,GAAG,IAAA,kBAAQ,EAAC,aAAa,EAAE,MAAM,EAAE,OAAO,CAAC,CAAC;IAC7D,MAAM,YAAY,GAAG,gBAAgB,CAAC,UAAU,CAAC,WAAW,CAAC,CAAC;IAC9D,IAAI,eAAe,GAAG,EAAE,CAAC;IAEzB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,SAAS,GAAG,YAAY,CAAC,MAAM,EAAE,CAAC,GAAG,SAAS,EAAE,CAAC,EAAE,EAAE;QACnE,MAAM,MAAM,GAAG,YAAY,CAAC,CAAC,CAAC,CAAC;QAC/B,MAAM,SAAS,GAAG,MAAM,CAAC,MAAM,CAAC;QAEhC,IAAI,SAAS,GAAG,CAAC,EAAE;YACjB,SAAS;SACV;QAED,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,SAAS,EAAE,CAAC,EAAE,EAAE;YAClC,MAAM,KAAK,GAAG,MAAM,CAAC,CAAC,CAAC,CAAC;YACxB,MAAM,GAAG,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC;YAE1B,eAAe,IAAI,GAAG,GAAG,IAAI,KAAK,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,KAAK,KAAK,CAAC,CAAC,CAAC,CAAC,OAAO,CACnE,CAAC,CACF,GAAG,CAAC;SACN;QAED,IAAI,SAAS,EAAE;YACb,eAAe,IAAI,IAAI,CAAC;SACzB;KACF;IAED,IAAI,CAAC,eAAe,EAAE;QACpB,OAAO;KACR;IAED,MAAM,UAAU,GAAG;QACjB,CAAC,EAAE,eAAe;QAClB,MAAM,EAAE,KAAK;QACb,IAAI,EAAE,SAAS;QACf,cAAc,EAAE,WAAW;QAC3B,cAAc,EAAE,WAAW;QAC3B,kBAAkB,EAAE,QAAQ;KAC7B,CAAC;IAEF,IAAI,YAAY,EAAE;QAEhB,IAAA,kCAAwB,EAAC,UAAU,EAAE,YAAY,CAAC,CAAC;QAEnD,gBAAgB,CAAC,cAAc,CAAC,WAAW,CAAC,CAAC;KAC9C;SAAM;QACL,MAAM,OAAO,GAAG,QAAQ,CAAC,eAAe,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC;QAExD,IAAA,iCAAuB,EAAC,UAAU,EAAE,OAAO,CAAC,CAAC;QAC7C,gBAAgB,CAAC,UAAU,CAAC,OAAO,EAAE,WAAW,CAAC,CAAC;KACnD;AACH,CAAC;AArFD,2BAqFC"}

package/dist/cjs/enums/WorkerTypes.d.ts

@@ -3,6 +3,6 @@ declare enum ChangeTypes {
     POLYSEG_SURFACE_TO_LABELMAP = "polySeg/convertSurfacesToVolumeLabelmap",
     POLYSEG_CONTOUR_TO_SURFACE = "polySeg/convertContourToSurface",
     POLYSEG_LABELMAP_TO_SURFACE = "polySeg/convertLabelmapToSurface",
-    DISPLAY_TOOL_CLIP_SURFACE = "displayTool/clipSurface"
+    SURFACE_CLIPPING = "surfaceClipping"
 }
 export default ChangeTypes;

package/dist/cjs/enums/WorkerTypes.js

@@ -6,7 +6,7 @@ var ChangeTypes;
     ChangeTypes["POLYSEG_SURFACE_TO_LABELMAP"] = "polySeg/convertSurfacesToVolumeLabelmap";
     ChangeTypes["POLYSEG_CONTOUR_TO_SURFACE"] = "polySeg/convertContourToSurface";
     ChangeTypes["POLYSEG_LABELMAP_TO_SURFACE"] = "polySeg/convertLabelmapToSurface";
-    ChangeTypes["DISPLAY_TOOL_CLIP_SURFACE"] = "displayTool/clipSurface";
+    ChangeTypes["SURFACE_CLIPPING"] = "surfaceClipping";
 })(ChangeTypes || (ChangeTypes = {}));
 exports.default = ChangeTypes;
 //# sourceMappingURL=WorkerTypes.js.map

package/dist/cjs/enums/WorkerTypes.js.map

@@ -1 +1 @@
-{"version":3,"file":"WorkerTypes.js","sourceRoot":"","sources":["../../../src/enums/WorkerTypes.ts"],"names":[],"mappings":";;AAGA,IAAK,WAUJ;AAVD,WAAK,WAAW;IACd,qFAAsE,CAAA;IAEtE,sFAAuE,CAAA;IAEvE,6EAA8D,CAAA;IAE9D,+EAAgE,CAAA;IAEhE,oEAAqD,CAAA;AACvD,CAAC,EAVI,WAAW,KAAX,WAAW,QAUf;AAED,kBAAe,WAAW,CAAC"}
+{"version":3,"file":"WorkerTypes.js","sourceRoot":"","sources":["../../../src/enums/WorkerTypes.ts"],"names":[],"mappings":";;AAGA,IAAK,WAUJ;AAVD,WAAK,WAAW;IACd,qFAAsE,CAAA;IAEtE,sFAAuE,CAAA;IAEvE,6EAA8D,CAAA;IAE9D,+EAAgE,CAAA;IAEhE,mDAAoC,CAAA;AACtC,CAAC,EAVI,WAAW,KAAX,WAAW,QAUf;AAED,kBAAe,WAAW,CAAC"}

package/dist/cjs/stateManagement/segmentation/helpers/clipAndCacheSurfacesForViewport.d.ts

@@ -0,0 +1,17 @@
+import { Types } from '@cornerstonejs/core';
+export declare type SurfacesInfo = {
+    id: string;
+    points: number[];
+    polys: number[];
+    segmentIndex: number;
+};
+export declare type SurfaceClipResult = {
+    points: number[];
+    lines: number[];
+    numberOfCells: number;
+};
+export declare type PolyDataClipCacheType = Map<string, Map<string, SurfaceClipResult>>;
+export declare function clipAndCacheSurfacesForViewport(surfacesInfo: SurfacesInfo[], viewport: Types.IVolumeViewport, segmentationRepresentationUID: string): Promise<PolyDataClipCacheType>;
+export declare function getSurfaceActorUID(segmentationRepresentationUID: string, surfaceId: string): string;
+export declare function generateCacheId(viewport: any, viewPlaneNormal: any, sliceIndex: any): string;
+export declare function updatePolyDataCache(actorUID: string, cacheId: string, polyDataResult: SurfaceClipResult): void;

package/dist/cjs/stateManagement/segmentation/helpers/clipAndCacheSurfacesForViewport.js

@@ -0,0 +1,112 @@
+"use strict";
+var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
+    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
+    return new (P || (P = Promise))(function (resolve, reject) {
+        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
+        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
+        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
+        step((generator = generator.apply(thisArg, _arguments || [])).next());
+    });
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.updatePolyDataCache = exports.generateCacheId = exports.getSurfaceActorUID = exports.clipAndCacheSurfacesForViewport = void 0;
+const core_1 = require("@cornerstonejs/core");
+const enums_1 = require("../../../enums");
+const utilities_1 = require("../../../utilities");
+const registerPolySegWorker_1 = require("../polySeg/registerPolySegWorker");
+const workerManager = (0, core_1.getWebWorkerManager)();
+const polyDataCache = new Map();
+const surfacesAABBCache = new Map();
+const triggerWorkerProgress = (eventTarget, progress) => {
+    (0, core_1.triggerEvent)(eventTarget, core_1.Enums.Events.WEB_WORKER_PROGRESS, {
+        progress,
+        type: enums_1.WorkerTypes.SURFACE_CLIPPING,
+    });
+};
+function clipAndCacheSurfacesForViewport(surfacesInfo, viewport, segmentationRepresentationUID) {
+    var _a;
+    return __awaiter(this, void 0, void 0, function* () {
+        (0, registerPolySegWorker_1.registerPolySegWorker)();
+        const planesInfo = (_a = viewport.getSlicesClippingPlanes) === null || _a === void 0 ? void 0 : _a.call(viewport);
+        if (!planesInfo) {
+            return;
+        }
+        const currentSliceIndex = viewport.getSliceIndex();
+        planesInfo.sort((a, b) => {
+            const diffA = Math.abs(a.sliceIndex - currentSliceIndex);
+            const diffB = Math.abs(b.sliceIndex - currentSliceIndex);
+            return diffA - diffB;
+        });
+        triggerWorkerProgress(core_1.eventTarget, 0);
+        yield updateSurfacesAABBCache(surfacesInfo);
+        const surfacesAABB = new Map();
+        surfacesInfo.forEach((surface) => {
+            surfacesAABB.set(surface.id, surfacesAABBCache.get(surface.id));
+        });
+        const camera = viewport.getCamera();
+        yield workerManager
+            .executeTask('polySeg', 'cutSurfacesIntoPlanes', {
+            surfacesInfo,
+            planesInfo,
+            surfacesAABB,
+        }, {
+            callbacks: [
+                ({ progress }) => {
+                    triggerWorkerProgress(core_1.eventTarget, progress);
+                },
+                ({ sliceIndex, polyDataResults }) => {
+                    polyDataResults.forEach((polyDataResult, surfaceId) => {
+                        const actorUID = `${segmentationRepresentationUID}_${surfaceId}`;
+                        const cacheId = generateCacheId(viewport, camera.viewPlaneNormal, sliceIndex);
+                        updatePolyDataCache(actorUID, cacheId, polyDataResult);
+                    });
+                },
+            ],
+        })
+            .catch((error) => {
+            console.error(error);
+        });
+        triggerWorkerProgress(core_1.eventTarget, 1);
+        return polyDataCache;
+    });
+}
+exports.clipAndCacheSurfacesForViewport = clipAndCacheSurfacesForViewport;
+function updateSurfacesAABBCache(surfacesInfo) {
+    return __awaiter(this, void 0, void 0, function* () {
+        const surfacesWithoutAABB = surfacesInfo.filter((surface) => !surfacesAABBCache.has(surface.id));
+        if (!surfacesWithoutAABB.length) {
+            return;
+        }
+        const surfacesAABB = yield workerManager.executeTask('polySeg', 'getSurfacesAABBs', {
+            surfacesInfo: surfacesWithoutAABB,
+        }, {
+            callbacks: [
+                ({ progress }) => {
+                    triggerWorkerProgress(core_1.eventTarget, progress);
+                },
+            ],
+        });
+        surfacesAABB.forEach((aabb, id) => {
+            surfacesAABBCache.set(id, aabb);
+        });
+    });
+}
+function getSurfaceActorUID(segmentationRepresentationUID, surfaceId) {
+    return `${segmentationRepresentationUID}_${surfaceId}`;
+}
+exports.getSurfaceActorUID = getSurfaceActorUID;
+function generateCacheId(viewport, viewPlaneNormal, sliceIndex) {
+    return `${viewport.id}-${(0, utilities_1.pointToString)(viewPlaneNormal)}-${sliceIndex}`;
+}
+exports.generateCacheId = generateCacheId;
+function updatePolyDataCache(actorUID, cacheId, polyDataResult) {
+    const { points, lines, numberOfCells } = polyDataResult;
+    let actorCache = polyDataCache.get(actorUID);
+    if (!actorCache) {
+        actorCache = new Map();
+        polyDataCache.set(actorUID, actorCache);
+    }
+    actorCache.set(cacheId, { points, lines, numberOfCells });
+}
+exports.updatePolyDataCache = updatePolyDataCache;
+//# sourceMappingURL=clipAndCacheSurfacesForViewport.js.map

package/dist/cjs/stateManagement/segmentation/helpers/clipAndCacheSurfacesForViewport.js.map

@@ -0,0 +1 @@
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package/dist/cjs/stateManagement/segmentation/polySeg/Contour/computeAndAddContourRepresentation.d.ts

@@ -1,2 +1,4 @@
 import { PolySegConversionOptions } from '../../../../types';
-export declare function computeAndAddContourRepresentation(segmentationId: string, options?: PolySegConversionOptions): void;
+export declare function computeAndAddContourRepresentation(segmentationId: string, options?: PolySegConversionOptions): Promise<{
+    annotationUIDsMap: Map<number, Set<string>>;
+}>;

package/dist/cjs/stateManagement/segmentation/polySeg/Contour/computeAndAddContourRepresentation.js

@@ -1,8 +1,11 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.computeAndAddContourRepresentation = void 0;
+const enums_1 = require("../../../../enums");
+const computeAndAddRepresentation_1 = require("../computeAndAddRepresentation");
+const contourComputationStrategies_1 = require("./contourComputationStrategies");
 function computeAndAddContourRepresentation(segmentationId, options = {}) {
-    throw new Error('Not implemented yet');
+    return (0, computeAndAddRepresentation_1.computeAndAddRepresentation)(segmentationId, enums_1.SegmentationRepresentations.Contour, () => (0, contourComputationStrategies_1.computeContourData)(segmentationId, options), () => undefined);
 }
 exports.computeAndAddContourRepresentation = computeAndAddContourRepresentation;
 //# sourceMappingURL=computeAndAddContourRepresentation.js.map

package/dist/cjs/stateManagement/segmentation/polySeg/Contour/computeAndAddContourRepresentation.js.map

@@ -1 +1 @@
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+{"version":3,"file":"computeAndAddContourRepresentation.js","sourceRoot":"","sources":["../../../../../../src/stateManagement/segmentation/polySeg/Contour/computeAndAddContourRepresentation.ts"],"names":[],"mappings":";;;AAAA,6CAAgE;AAEhE,gFAA6E;AAC7E,iFAAoE;AAUpE,SAAgB,kCAAkC,CAChD,cAAsB,EACtB,UAAoC,EAAE;IAEtC,OAAO,IAAA,yDAA2B,EAChC,cAAc,EACd,mCAA2B,CAAC,OAAO,EACnC,GAAG,EAAE,CAAC,IAAA,iDAAkB,EAAC,cAAc,EAAE,OAAO,CAAC,EACjD,GAAG,EAAE,CAAC,SAAS,CAChB,CAAC;AACJ,CAAC;AAVD,gFAUC"}

package/dist/cjs/stateManagement/segmentation/polySeg/Contour/contourComputationStrategies.d.ts

@@ -0,0 +1,8 @@
+import { PolySegConversionOptions } from '../../../../types';
+import { SurfaceClipResult } from '../../helpers/clipAndCacheSurfacesForViewport';
+export declare type RawContourData = Map<number, SurfaceClipResult[]>;
+export declare function computeContourData(segmentationId: string, options?: PolySegConversionOptions): Promise<{
+    annotationUIDsMap: Map<number, Set<string>>;
+}>;
+declare function computeContourFromLabelmapSegmentation(segmentationId: any, options?: PolySegConversionOptions): Promise<RawContourData>;
+export { computeContourFromLabelmapSegmentation };

package/dist/cjs/stateManagement/segmentation/polySeg/Contour/contourComputationStrategies.js

@@ -0,0 +1,121 @@
+"use strict";
+var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
+    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
+    return new (P || (P = Promise))(function (resolve, reject) {
+        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
+        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
+        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
+        step((generator = generator.apply(thisArg, _arguments || [])).next());
+    });
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.computeContourFromLabelmapSegmentation = exports.computeContourData = void 0;
+const core_1 = require("@cornerstonejs/core");
+const segmentation_1 = require("../../../../utilities/segmentation");
+const segmentationState_1 = require("../../segmentationState");
+const surfaceComputationStrategies_1 = require("../Surface/surfaceComputationStrategies");
+const clipAndCacheSurfacesForViewport_1 = require("../../helpers/clipAndCacheSurfacesForViewport");
+const extractContourData_1 = require("./utils/extractContourData");
+const createAndAddContourSegmentationsFromClippedSurfaces_1 = require("./utils/createAndAddContourSegmentationsFromClippedSurfaces");
+const ToolGroupManager_1 = require("../../../../store/ToolGroupManager");
+function computeContourData(segmentationId, options = {}) {
+    var _a, _b;
+    return __awaiter(this, void 0, void 0, function* () {
+        const segmentIndices = ((_a = options.segmentIndices) === null || _a === void 0 ? void 0 : _a.length)
+            ? options.segmentIndices
+            : (0, segmentation_1.getUniqueSegmentIndices)(segmentationId);
+        let rawContourData;
+        const segmentation = (0, segmentationState_1.getSegmentation)(segmentationId);
+        const representationData = segmentation.representationData;
+        try {
+            if (representationData.SURFACE) {
+                rawContourData = yield computeContourFromSurfaceSegmentation(segmentationId, Object.assign({ segmentIndices }, options));
+            }
+            else if (representationData.LABELMAP) {
+                rawContourData = yield computeContourFromLabelmapSegmentation(segmentationId, Object.assign({ segmentIndices }, options));
+            }
+        }
+        catch (error) {
+            console.error(error);
+            throw error;
+        }
+        if (!rawContourData) {
+            throw new Error('Not enough data to convert to contour, currently only support converting volume labelmap to contour if available');
+        }
+        const { viewport, segmentationRepresentationUID } = options;
+        const annotationUIDsMap = (0, createAndAddContourSegmentationsFromClippedSurfaces_1.createAndAddContourSegmentationsFromClippedSurfaces)(rawContourData, viewport, segmentationId);
+        const toolGroupId = (_b = (0, ToolGroupManager_1.getToolGroupForViewport)(viewport.id)) === null || _b === void 0 ? void 0 : _b.id;
+        (0, segmentationState_1.setSegmentationRepresentationSpecificConfig)(toolGroupId, segmentationRepresentationUID, {
+            CONTOUR: {
+                fillAlpha: 0,
+            },
+        });
+        return {
+            annotationUIDsMap,
+        };
+    });
+}
+exports.computeContourData = computeContourData;
+function computeContourFromLabelmapSegmentation(segmentationId, options = {}) {
+    return __awaiter(this, void 0, void 0, function* () {
+        if (!options.viewport) {
+            throw new Error('Viewport is required to compute contour from labelmap');
+        }
+        const results = yield (0, surfaceComputationStrategies_1.computeSurfaceFromLabelmapSegmentation)(segmentationId, options);
+        if (!(results === null || results === void 0 ? void 0 : results.length)) {
+            console.error('Failed to convert labelmap to surface or labelmap is empty');
+            return;
+        }
+        const { viewport, segmentationRepresentationUID } = options;
+        const pointsAndPolys = results.map((surface) => {
+            return {
+                id: surface.segmentIndex.toString(),
+                points: surface.data.points,
+                polys: surface.data.polys,
+                segmentIndex: surface.segmentIndex,
+            };
+        });
+        const polyDataCache = yield (0, clipAndCacheSurfacesForViewport_1.clipAndCacheSurfacesForViewport)(pointsAndPolys, viewport, segmentationRepresentationUID);
+        const rawResults = (0, extractContourData_1.extractContourData)(polyDataCache);
+        return rawResults;
+    });
+}
+exports.computeContourFromLabelmapSegmentation = computeContourFromLabelmapSegmentation;
+function computeContourFromSurfaceSegmentation(segmentationId, options = {}) {
+    var _a;
+    return __awaiter(this, void 0, void 0, function* () {
+        if (!options.viewport) {
+            throw new Error('Viewport is required to compute contour from surface');
+        }
+        const { viewport, segmentationRepresentationUID } = options;
+        const segmentIndices = ((_a = options.segmentIndices) === null || _a === void 0 ? void 0 : _a.length)
+            ? options.segmentIndices
+            : (0, segmentation_1.getUniqueSegmentIndices)(segmentationId);
+        const segmentIndexToSurfaceId = new Map();
+        const surfaceIdToSegmentIndex = new Map();
+        const segmentation = (0, segmentationState_1.getSegmentation)(segmentationId);
+        const representationData = segmentation.representationData.SURFACE;
+        const surfacesInfo = [];
+        representationData.geometryIds.forEach((geometryId, segmentIndex) => {
+            var _a;
+            if (segmentIndices.includes(segmentIndex)) {
+                segmentIndexToSurfaceId.set(segmentIndex, geometryId);
+                const surface = (_a = core_1.cache.getGeometry(geometryId)) === null || _a === void 0 ? void 0 : _a.data;
+                if (surface) {
+                    surfacesInfo.push({
+                        id: geometryId,
+                        points: surface.getPoints(),
+                        polys: surface.getPolys(),
+                    });
+                }
+            }
+        });
+        segmentIndexToSurfaceId.forEach((surfaceId, segmentIndex) => {
+            surfaceIdToSegmentIndex.set(surfaceId, segmentIndex);
+        });
+        const polyDataCache = yield (0, clipAndCacheSurfacesForViewport_1.clipAndCacheSurfacesForViewport)(surfacesInfo, viewport, segmentationRepresentationUID);
+        const rawResults = (0, extractContourData_1.extractContourData)(polyDataCache, surfaceIdToSegmentIndex);
+        return rawResults;
+    });
+}
+//# sourceMappingURL=contourComputationStrategies.js.map

package/dist/cjs/stateManagement/segmentation/polySeg/Contour/contourComputationStrategies.js.map

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package/dist/cjs/stateManagement/segmentation/polySeg/Contour/utils/createAndAddContourSegmentationsFromClippedSurfaces.d.ts

@@ -0,0 +1,3 @@
+import { RawContourData } from '../contourComputationStrategies';
+import { type Types } from '@cornerstonejs/core';
+export declare function createAndAddContourSegmentationsFromClippedSurfaces(rawContourData: RawContourData, viewport: Types.IViewport, segmentationId: string): Map<number, Set<string>>;

package/dist/cjs/stateManagement/segmentation/polySeg/Contour/utils/createAndAddContourSegmentationsFromClippedSurfaces.js

@@ -0,0 +1,73 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.createAndAddContourSegmentationsFromClippedSurfaces = void 0;
+const tools_1 = require("../../../../../tools");
+const annotationState_1 = require("../../../../annotation/annotationState");
+const core_1 = require("@cornerstonejs/core");
+function createAndAddContourSegmentationsFromClippedSurfaces(rawContourData, viewport, segmentationId) {
+    const annotationUIDsMap = new Map();
+    for (const [segmentIndex, contoursData] of rawContourData) {
+        for (const contourData of contoursData) {
+            const { points } = contourData;
+            const { lineSegments, linesNumberOfPoints } = _extractLineSegments(contourData);
+            for (let i = 0; i < lineSegments.length; i++) {
+                const line = lineSegments[i];
+                const polyline = [];
+                for (let j = 0; j < linesNumberOfPoints[i]; j++) {
+                    const pointIndex = line[j];
+                    polyline.push([
+                        points[3 * pointIndex],
+                        points[3 * pointIndex + 1],
+                        points[3 * pointIndex + 2],
+                    ]);
+                }
+                if (polyline.length < 3) {
+                    continue;
+                }
+                const contourSegmentationAnnotation = {
+                    annotationUID: core_1.utilities.uuidv4(),
+                    data: {
+                        contour: {
+                            closed: true,
+                            polyline,
+                        },
+                        segmentation: {
+                            segmentationId,
+                            segmentIndex,
+                        },
+                        handles: {},
+                    },
+                    handles: {},
+                    highlighted: false,
+                    autoGenerated: false,
+                    invalidated: false,
+                    isLocked: false,
+                    isVisible: true,
+                    metadata: Object.assign({ toolName: tools_1.PlanarFreehandContourSegmentationTool.toolName }, viewport.getViewReference()),
+                };
+                (0, annotationState_1.addAnnotation)(contourSegmentationAnnotation, viewport.element);
+                const currentSet = annotationUIDsMap.get(segmentIndex) || new Set();
+                currentSet.add(contourSegmentationAnnotation.annotationUID);
+                annotationUIDsMap.set(segmentIndex, currentSet);
+            }
+        }
+    }
+    return annotationUIDsMap;
+}
+exports.createAndAddContourSegmentationsFromClippedSurfaces = createAndAddContourSegmentationsFromClippedSurfaces;
+const _extractLineSegments = (contourData) => {
+    const { numberOfCells, lines } = contourData;
+    const lineSegments = [];
+    const linesNumberOfPoints = [];
+    for (let i = 0; i < lines.length;) {
+        const pointsInLine = lines[i];
+        linesNumberOfPoints.push(pointsInLine);
+        lineSegments.push(lines.slice(i + 1, i + pointsInLine + 1));
+        i += pointsInLine + 1;
+        if (lineSegments.length === numberOfCells) {
+            break;
+        }
+    }
+    return { lineSegments, linesNumberOfPoints };
+};
+//# sourceMappingURL=createAndAddContourSegmentationsFromClippedSurfaces.js.map

package/dist/cjs/stateManagement/segmentation/polySeg/Contour/utils/createAndAddContourSegmentationsFromClippedSurfaces.js.map

@@ -0,0 +1 @@
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package/dist/cjs/stateManagement/segmentation/polySeg/Contour/utils/extractContourData.d.ts

@@ -0,0 +1,3 @@
+import { PolyDataClipCacheType } from '../../../helpers/clipAndCacheSurfacesForViewport';
+import { RawContourData } from '../contourComputationStrategies';
+export declare function extractContourData(polyDataCache: PolyDataClipCacheType, segmentIndexMap?: Map<string, number>): RawContourData;

package/dist/cjs/stateManagement/segmentation/polySeg/Contour/utils/extractContourData.js

@@ -0,0 +1,25 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.extractContourData = void 0;
+function extractContourData(polyDataCache, segmentIndexMap) {
+    const rawResults = new Map();
+    for (const [cacheId, intersectionInfo] of polyDataCache) {
+        const surfaceId = cacheId.split('_')[1];
+        for (const [_, result] of intersectionInfo) {
+            if (!result) {
+                continue;
+            }
+            const segmentIndex = Number(surfaceId) || (segmentIndexMap === null || segmentIndexMap === void 0 ? void 0 : segmentIndexMap.get(surfaceId));
+            if (!segmentIndex) {
+                continue;
+            }
+            if (!rawResults.has(segmentIndex)) {
+                rawResults.set(segmentIndex, []);
+            }
+            rawResults.get(segmentIndex).push(result);
+        }
+    }
+    return rawResults;
+}
+exports.extractContourData = extractContourData;
+//# sourceMappingURL=extractContourData.js.map

package/dist/cjs/stateManagement/segmentation/polySeg/Contour/utils/extractContourData.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"extractContourData.js","sourceRoot":"","sources":["../../../../../../../src/stateManagement/segmentation/polySeg/Contour/utils/extractContourData.ts"],"names":[],"mappings":";;;AASA,SAAgB,kBAAkB,CAChC,aAAoC,EACpC,eAAqC;IAErC,MAAM,UAAU,GAAG,IAAI,GAAG,EAAoB,CAAC;IAE/C,KAAK,MAAM,CAAC,OAAO,EAAE,gBAAgB,CAAC,IAAI,aAAa,EAAE;QAEvD,MAAM,SAAS,GAAG,OAAO,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QAExC,KAAK,MAAM,CAAC,CAAC,EAAE,MAAM,CAAC,IAAI,gBAAgB,EAAE;YAC1C,IAAI,CAAC,MAAM,EAAE;gBACX,SAAS;aACV;YACD,MAAM,YAAY,GAAG,MAAM,CAAC,SAAS,CAAC,KAAI,eAAe,aAAf,eAAe,uBAAf,eAAe,CAAE,GAAG,CAAC,SAAS,CAAC,CAAA,CAAC;YAE1E,IAAI,CAAC,YAAY,EAAE;gBACjB,SAAS;aACV;YAED,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC,YAAY,CAAC,EAAE;gBACjC,UAAU,CAAC,GAAG,CAAC,YAAY,EAAE,EAAE,CAAC,CAAC;aAClC;YAED,UAAU,CAAC,GAAG,CAAC,YAAY,CAAC,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;SAC3C;KACF;IACD,OAAO,UAAU,CAAC;AACpB,CAAC;AA5BD,gDA4BC"}

package/dist/cjs/stateManagement/segmentation/polySeg/Contour/utils/updateContoursOnCameraModified.d.ts

@@ -0,0 +1 @@
+export declare function updateContoursOnCameraModified(surfacesInfo: any, viewport: any, segmentationRepresentationUID: any): void;

package/dist/cjs/stateManagement/segmentation/polySeg/Contour/utils/updateContoursOnCameraModified.js

@@ -0,0 +1,41 @@
+"use strict";
+var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
+    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
+    return new (P || (P = Promise))(function (resolve, reject) {
+        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
+        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
+        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
+        step((generator = generator.apply(thisArg, _arguments || [])).next());
+    });
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.updateContoursOnCameraModified = void 0;
+const core_1 = require("@cornerstonejs/core");
+const extractContourData_1 = require("./extractContourData");
+const clipAndCacheSurfacesForViewport_1 = require("../../../helpers/clipAndCacheSurfacesForViewport");
+const createAndAddContourSegmentationsFromClippedSurfaces_1 = require("./createAndAddContourSegmentationsFromClippedSurfaces");
+const currentViewportNormal = new Map();
+function updateContoursOnCameraModified(surfacesInfo, viewport, segmentationRepresentationUID) {
+    function cameraModifiedCallback(evt) {
+        return __awaiter(this, void 0, void 0, function* () {
+            const { camera } = evt.detail;
+            const { viewPlaneNormal } = camera;
+            const surface1 = surfacesInfo[0];
+            const currentNormal = currentViewportNormal.get(surface1.id);
+            if (core_1.utilities.isEqual(viewPlaneNormal, currentNormal)) {
+                return;
+            }
+            currentViewportNormal.set(surface1.id, viewPlaneNormal);
+            const polyDataCache = yield (0, clipAndCacheSurfacesForViewport_1.clipAndCacheSurfacesForViewport)(surfacesInfo, viewport, segmentationRepresentationUID);
+            const results = (0, extractContourData_1.extractContourData)(polyDataCache);
+            (0, createAndAddContourSegmentationsFromClippedSurfaces_1.createAndAddContourSegmentationsFromClippedSurfaces)(results, viewport, segmentationRepresentationUID);
+            viewport.render();
+        });
+    }
+    const camera = viewport.getCamera();
+    currentViewportNormal.set(surfacesInfo[0].id, camera.viewPlaneNormal);
+    viewport.element.removeEventListener(core_1.Enums.Events.CAMERA_MODIFIED, cameraModifiedCallback);
+    viewport.element.addEventListener(core_1.Enums.Events.CAMERA_MODIFIED);
+}
+exports.updateContoursOnCameraModified = updateContoursOnCameraModified;
+//# sourceMappingURL=updateContoursOnCameraModified.js.map

package/dist/cjs/stateManagement/segmentation/polySeg/Contour/utils/updateContoursOnCameraModified.js.map

@@ -0,0 +1 @@
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package/dist/cjs/stateManagement/segmentation/polySeg/Labelmap/convertContourToLabelmap.js

@@ -57,7 +57,7 @@ function convertContourToVolumeLabelmap(contourRepresentationData, options = {})
                 },
             ],
         });
-        triggerWorkerProgress(core_1.eventTarget, 100);
+        triggerWorkerProgress(core_1.eventTarget, 1);
         segmentationVolume.imageData
             .getPointData()
             .getScalars()
@@ -125,7 +125,7 @@ function convertContourToStackLabelmap(contourRepresentationData, options = {})
                 },
             ],
         });
-        triggerWorkerProgress(core_1.eventTarget, 100);
+        triggerWorkerProgress(core_1.eventTarget, 1);
         const imageIdReferenceMap = new Map();
         newSegmentationsScalarData.forEach(({ scalarData }, referencedImageId) => {
             var _a, _b;

package/dist/cjs/stateManagement/segmentation/polySeg/Labelmap/convertContourToLabelmap.js.map

@@ -1 +1 @@
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+{"version":3,"file":"convertContourToLabelmap.js","sourceRoot":"","sources":["../../../../../../src/stateManagement/segmentation/polySeg/Labelmap/convertContourToLabelmap.ts"],"names":[],"mappings":";;;;;;;;;;;;AAAA,yCAAiC;AACjC,8CAW6B;AAM7B,gCAAyC;AACzC,6CAAgD;AAEhD,MAAM,aAAa,GAAG,IAAA,0BAAmB,GAAE,CAAC;AAE5C,MAAM,qBAAqB,GAAG,CAAC,WAAW,EAAE,QAAQ,EAAE,EAAE;IACtD,IAAA,mBAAY,EAAC,WAAW,EAAE,YAAK,CAAC,MAAM,CAAC,mBAAmB,EAAE;QAC1D,QAAQ;QACR,IAAI,EAAE,mBAAW,CAAC,2BAA2B;KAC9C,CAAC,CAAC;AACL,CAAC,CAAC;AAEF,SAAsB,8BAA8B,CAClD,yBAAkD,EAClD,UAAoC,EAAE;;QAEtC,MAAM,EAAE,QAAQ,EAAE,GAAG,OAAO,CAAC;QAE7B,MAAM,QAAQ,GAAG,gBAAS,CAAC,mBAAmB,CAAC,QAAQ,CAAC,CAAC;QAEzD,IAAI,CAAC,QAAQ,EAAE;YACb,MAAM,IAAI,KAAK,CACb,uFAAuF,CACxF,CAAC;SACH;QAED,MAAM,oBAAoB,GAAG,gBAAS,CAAC,MAAM,EAAE,CAAC;QAEhD,MAAM,WAAW,GAAG,gBAAS,CAAC,+BAA+B,CAC3D,QAAQ,EACR,oBAAoB,CACrB,CAAC;QAEF,MAAM,EAAE,QAAQ,EAAE,UAAU,EAAE,MAAM,EAAE,SAAS,EAAE,OAAO,EAAE,UAAU,EAAE,GACpE,WAAW,CAAC;QAEd,MAAM,kBAAkB,GAAG,MAAM,mBAAY,CAAC,6BAA6B,CACzE;YACE,UAAU;YACV,MAAM;YACN,SAAS;YACT,OAAO;YACP,QAAQ;YACR,QAAQ,EAAE,QAAQ,CAAC,GAAG,CAAC,CAAC,OAAO,EAAE,EAAE,CAAC,eAAe,OAAO,EAAE,CAAC;YAC7D,kBAAkB,EAAE,QAAQ;SAC7B,EACD,oBAAoB,CACrB,CAAC;QAEF,MAAM,EAAE,cAAc,EAAE,0BAA0B,EAAE,GAClD,iCAAiC,CAAC,yBAAyB,EAAE,OAAO,CAAC,CAAC;QAExE,qBAAqB,CAAC,kBAAW,EAAE,CAAC,CAAC,CAAC;QAEtC,MAAM,aAAa,GAAG,MAAM,aAAa,CAAC,WAAW,CACnD,SAAS,EACT,gCAAgC,EAChC;YACE,cAAc;YACd,UAAU;YACV,UAAU;YACV,MAAM;YACN,SAAS;YACT,OAAO;YACP,0BAA0B;SAC3B,EACD;YACE,SAAS,EAAE;gBACT,CAAC,QAAQ,EAAE,EAAE;oBACX,qBAAqB,CAAC,kBAAW,EAAE,QAAQ,CAAC,CAAC;gBAC/C,CAAC;aACF;SACF,CACF,CAAC;QAEF,qBAAqB,CAAC,kBAAW,EAAE,CAAC,CAAC,CAAC;QAEtC,kBAAkB,CAAC,SAAS;aACzB,YAAY,EAAE;aACd,UAAU,EAAE;aACZ,OAAO,CAAC,aAAa,CAAC,CAAC;QAC1B,kBAAkB,CAAC,SAAS,CAAC,QAAQ,EAAE,CAAC;QAGxC,kBAAkB,CAAC,QAAQ,EAAE,CAAC;QAE9B,OAAO;YACL,QAAQ,EAAE,kBAAkB,CAAC,QAAQ;SACtC,CAAC;IACJ,CAAC;CAAA;AA7ED,wEA6EC;AAED,SAAsB,6BAA6B,CACjD,yBAAkD,EAClD,UAAoC,EAAE;;QAEtC,IAAI,CAAC,OAAO,CAAC,QAAQ,EAAE;YACrB,MAAM,IAAI,KAAK,CACb,4EAA4E,CAC7E,CAAC;SACH;QAED,MAAM,QAAQ,GAAG,OAAO,CAAC,QAAgC,CAAC;QAE1D,MAAM,QAAQ,GAAG,QAAQ,CAAC,WAAW,EAAE,CAAC;QAExC,IAAI,CAAC,QAAQ,EAAE;YACb,MAAM,IAAI,KAAK,CACb,uFAAuF,CACxF,CAAC;SACH;QAGD,QAAQ,CAAC,OAAO,CAAC,CAAC,OAAO,EAAE,EAAE;YAC3B,IAAI,CAAC,YAAK,CAAC,kBAAkB,CAAC,OAAO,CAAC,EAAE;gBACtC,MAAM,IAAI,KAAK,CACb,+DAA+D,CAChE,CAAC;aACH;QACH,CAAC,CAAC,CAAC;QAGH,MAAM,EAAE,QAAQ,EAAE,oBAAoB,EAAE,GACtC,MAAM,kBAAW,CAAC,uCAAuC,CAAC,QAAQ,CAAC,CAAC;QAEtE,MAAM,EAAE,cAAc,EAAE,0BAA0B,EAAE,GAClD,iCAAiC,CAAC,yBAAyB,EAAE,OAAO,CAAC,CAAC;QAIxE,MAAM,iBAAiB,GAAG,IAAI,GAAG,EAAE,CAAC;QAGpC,oBAAoB,CAAC,OAAO,CAAC,CAAC,UAAU,EAAE,KAAK,EAAE,EAAE;YAEjD,MAAM,QAAQ,GAAG,YAAK,CAAC,QAAQ,CAAC,UAAU,CAAC,CAAC;YAG5C,MAAM,gBAAgB,GAAG,eAAQ,CAAC,GAAG,CACnC,YAAK,CAAC,eAAe,CAAC,WAAW,EACjC,UAAU,CACX,CAAC;YAGF,IAAI,EACF,aAAa,EACb,UAAU,EACV,eAAe,EACf,kBAAkB,EAClB,oBAAoB,GACrB,GAAG,gBAAgB,CAAC;YAGrB,aAAa,GAAG,aAAa,aAAb,aAAa,cAAb,aAAa,GAAI,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC;YAC3C,UAAU,GAAG,UAAU,aAAV,UAAU,cAAV,UAAU,GAAI,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC;YACrC,eAAe,GAAG,eAAe,aAAf,eAAe,cAAf,eAAe,GAAI,CAAC,CAAC;YACvC,kBAAkB,GAAG,kBAAkB,aAAlB,kBAAkB,cAAlB,kBAAkB,GAAI,CAAC,CAAC;YAC7C,oBAAoB,GAAG,oBAAoB,aAApB,oBAAoB,cAApB,oBAAoB,GAAI,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC;YAGzD,MAAM,YAAY,GAAG,gBAAI,CAAC,UAAU,CAClC,UAAU,CAAC,CAAC,CAAC,EACb,UAAU,CAAC,CAAC,CAAC,EACb,UAAU,CAAC,CAAC,CAAC,CACd,CAAC;YACF,MAAM,YAAY,GAAG,gBAAI,CAAC,UAAU,CAClC,aAAa,CAAC,CAAC,CAAC,EAChB,aAAa,CAAC,CAAC,CAAC,EAChB,aAAa,CAAC,CAAC,CAAC,CACjB,CAAC;YAGF,MAAM,cAAc,GAAG,gBAAI,CAAC,MAAM,EAAE,CAAC;YACrC,gBAAI,CAAC,KAAK,CAAC,cAAc,EAAE,YAAY,EAAE,YAAY,CAAC,CAAC;YAGvD,MAAM,SAAS,GAAG,CAAC,GAAG,YAAY,EAAE,GAAG,YAAY,EAAE,GAAG,cAAc,CAAC,CAAC;YACxE,MAAM,OAAO,GAAG,CAAC,eAAe,EAAE,kBAAkB,EAAE,CAAC,CAAC,CAAC;YAGzD,MAAM,MAAM,GAAG,oBAAoB,CAAC;YAGpC,iBAAiB,CAAC,GAAG,CAAC,QAAQ,CAAC,KAAK,CAAC,EAAE;gBACrC,SAAS;gBACT,OAAO;gBACP,MAAM;gBACN,UAAU,EAAE,QAAQ,CAAC,YAAY,EAAE;gBACnC,OAAO,EAAE,UAAU;gBACnB,UAAU,EAAE,CAAC,QAAQ,CAAC,KAAK,EAAE,QAAQ,CAAC,MAAM,EAAE,CAAC,CAAC;aACjD,CAAC,CAAC;QACL,CAAC,CAAC,CAAC;QAEH,qBAAqB,CAAC,kBAAW,EAAE,CAAC,CAAC,CAAC;QAEtC,MAAM,0BAA0B,GAAG,MAAM,aAAa,CAAC,WAAW,CAChE,SAAS,EACT,+BAA+B,EAC/B;YACE,iBAAiB;YACjB,0BAA0B;YAC1B,cAAc;SACf,EACD;YACE,SAAS,EAAE;gBACT,CAAC,QAAQ,EAAE,EAAE;oBACX,qBAAqB,CAAC,kBAAW,EAAE,QAAQ,CAAC,CAAC;gBAC/C,CAAC;aACF;SACF,CACF,CAAC;QAEF,qBAAqB,CAAC,kBAAW,EAAE,CAAC,CAAC,CAAC;QAEtC,MAAM,mBAAmB,GAAG,IAAI,GAAG,EAAE,CAAC;QACtC,0BAA0B,CAAC,OAAO,CAAC,CAAC,EAAE,UAAU,EAAE,EAAE,iBAAiB,EAAE,EAAE;;YACvE,MAAM,gBAAgB,GAAG,iBAAiB,CAAC,GAAG,CAAC,iBAAiB,CAAC,CAAC;YAClE,MAAM,EAAE,OAAO,EAAE,UAAU,EAAE,GAAG,gBAAgB,CAAC;YAEjD,MAAM,QAAQ,GAAG,YAAK,CAAC,QAAQ,CAAC,UAAU,CAAC,CAAC;YAC5C,QAAQ,CAAC,YAAY,EAAE,CAAC,GAAG,CAAC,UAAU,CAAC,CAAC;YACxC,MAAA,MAAA,QAAQ,CAAC,UAAU,0CAAE,SAAS,0CAAE,GAAG,CAAC,UAAU,CAAC,CAAC;YAEhD,mBAAmB,CAAC,GAAG,CAAC,iBAAiB,EAAE,UAAU,CAAC,CAAC;QACzD,CAAC,CAAC,CAAC;QAEH,OAAO;YACL,mBAAmB;SACpB,CAAC;IACJ,CAAC;CAAA;AAzID,sEAyIC;AAED,SAAS,iCAAiC,CACxC,yBAAkD,EAClD,UAAoC,EAAE;;IAEtC,MAAM,aAAa,GAAG,yBAAyB,CAAC,iBAAiB,CAAC;IAElE,MAAM,cAAc,GAAG,CAAA,MAAA,OAAO,CAAC,cAAc,0CAA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package/dist/cjs/stateManagement/segmentation/polySeg/Labelmap/convertSurfaceToLabelmap.js

@@ -51,7 +51,7 @@ function convertSurfaceToVolumeLabelmap(surfaceRepresentationData, segmentationV
                 },
             ],
         });
-        triggerWorkerProgress(core_1.eventTarget, 100);
+        triggerWorkerProgress(core_1.eventTarget, 1);
         segmentationVolume.imageData
             .getPointData()
             .getScalars()

package/dist/cjs/stateManagement/segmentation/polySeg/Labelmap/convertSurfaceToLabelmap.js.map

@@ -1 +1 @@
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package/dist/cjs/stateManagement/segmentation/polySeg/Labelmap/labelmapComputationStrategies.js.map

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