@cornerstonejs/tools 1.55.0 → 1.56.1

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Files changed (91) hide show
  1. package/dist/cjs/eventListeners/segmentation/imageChangeEventListener.js +15 -7
  2. package/dist/cjs/eventListeners/segmentation/imageChangeEventListener.js.map +1 -1
  3. package/dist/cjs/stateManagement/segmentation/polySeg/Labelmap/computeAndAddLabelmapRepresentation.js +1 -1
  4. package/dist/cjs/stateManagement/segmentation/polySeg/Labelmap/computeAndAddLabelmapRepresentation.js.map +1 -1
  5. package/dist/cjs/stateManagement/segmentation/polySeg/Labelmap/convertSurfaceToLabelmap.js +2 -1
  6. package/dist/cjs/stateManagement/segmentation/polySeg/Labelmap/convertSurfaceToLabelmap.js.map +1 -1
  7. package/dist/cjs/tools/annotation/CobbAngleTool.js +27 -22
  8. package/dist/cjs/tools/annotation/CobbAngleTool.js.map +1 -1
  9. package/dist/cjs/tools/segmentation/BrushTool.js +1 -1
  10. package/dist/cjs/tools/segmentation/BrushTool.js.map +1 -1
  11. package/dist/cjs/tools/segmentation/strategies/BrushStrategy.d.ts +3 -2
  12. package/dist/cjs/tools/segmentation/strategies/BrushStrategy.js +11 -4
  13. package/dist/cjs/tools/segmentation/strategies/BrushStrategy.js.map +1 -1
  14. package/dist/cjs/tools/segmentation/strategies/compositions/dynamicThreshold.js +9 -3
  15. package/dist/cjs/tools/segmentation/strategies/compositions/dynamicThreshold.js.map +1 -1
  16. package/dist/cjs/tools/segmentation/strategies/compositions/islandRemoval.js +1 -1
  17. package/dist/cjs/tools/segmentation/strategies/compositions/islandRemoval.js.map +1 -1
  18. package/dist/cjs/tools/segmentation/strategies/compositions/threshold.js +6 -2
  19. package/dist/cjs/tools/segmentation/strategies/compositions/threshold.js.map +1 -1
  20. package/dist/cjs/tools/segmentation/strategies/utils/getStrategyData.d.ts +2 -3
  21. package/dist/cjs/tools/segmentation/strategies/utils/getStrategyData.js +21 -6
  22. package/dist/cjs/tools/segmentation/strategies/utils/getStrategyData.js.map +1 -1
  23. package/dist/cjs/utilities/pointInShapeCallback.js +3 -1
  24. package/dist/cjs/utilities/pointInShapeCallback.js.map +1 -1
  25. package/dist/cjs/utilities/segmentation/floodFill.js +16 -22
  26. package/dist/cjs/utilities/segmentation/floodFill.js.map +1 -1
  27. package/dist/cjs/utilities/segmentation/getSegmentAtLabelmapBorder.js +3 -2
  28. package/dist/cjs/utilities/segmentation/getSegmentAtLabelmapBorder.js.map +1 -1
  29. package/dist/cjs/utilities/segmentation/getSegmentAtWorldPoint.js +3 -2
  30. package/dist/cjs/utilities/segmentation/getSegmentAtWorldPoint.js.map +1 -1
  31. package/dist/esm/eventListeners/segmentation/imageChangeEventListener.js +16 -8
  32. package/dist/esm/eventListeners/segmentation/imageChangeEventListener.js.map +1 -1
  33. package/dist/esm/stateManagement/segmentation/polySeg/Labelmap/computeAndAddLabelmapRepresentation.js +1 -1
  34. package/dist/esm/stateManagement/segmentation/polySeg/Labelmap/computeAndAddLabelmapRepresentation.js.map +1 -1
  35. package/dist/esm/stateManagement/segmentation/polySeg/Labelmap/convertSurfaceToLabelmap.js +2 -1
  36. package/dist/esm/stateManagement/segmentation/polySeg/Labelmap/convertSurfaceToLabelmap.js.map +1 -1
  37. package/dist/esm/tools/annotation/CobbAngleTool.js +33 -28
  38. package/dist/esm/tools/annotation/CobbAngleTool.js.map +1 -1
  39. package/dist/esm/tools/segmentation/BrushTool.js +1 -1
  40. package/dist/esm/tools/segmentation/BrushTool.js.map +1 -1
  41. package/dist/esm/tools/segmentation/strategies/BrushStrategy.js +10 -3
  42. package/dist/esm/tools/segmentation/strategies/BrushStrategy.js.map +1 -1
  43. package/dist/esm/tools/segmentation/strategies/compositions/dynamicThreshold.js +9 -3
  44. package/dist/esm/tools/segmentation/strategies/compositions/dynamicThreshold.js.map +1 -1
  45. package/dist/esm/tools/segmentation/strategies/compositions/islandRemoval.js +1 -1
  46. package/dist/esm/tools/segmentation/strategies/compositions/islandRemoval.js.map +1 -1
  47. package/dist/esm/tools/segmentation/strategies/compositions/threshold.js +6 -2
  48. package/dist/esm/tools/segmentation/strategies/compositions/threshold.js.map +1 -1
  49. package/dist/esm/tools/segmentation/strategies/utils/getStrategyData.js +21 -6
  50. package/dist/esm/tools/segmentation/strategies/utils/getStrategyData.js.map +1 -1
  51. package/dist/esm/utilities/pointInShapeCallback.js +3 -1
  52. package/dist/esm/utilities/pointInShapeCallback.js.map +1 -1
  53. package/dist/esm/utilities/segmentation/floodFill.js +16 -22
  54. package/dist/esm/utilities/segmentation/floodFill.js.map +1 -1
  55. package/dist/esm/utilities/segmentation/getSegmentAtLabelmapBorder.js +3 -2
  56. package/dist/esm/utilities/segmentation/getSegmentAtLabelmapBorder.js.map +1 -1
  57. package/dist/esm/utilities/segmentation/getSegmentAtWorldPoint.js +3 -2
  58. package/dist/esm/utilities/segmentation/getSegmentAtWorldPoint.js.map +1 -1
  59. package/dist/types/eventListeners/segmentation/imageChangeEventListener.d.ts.map +1 -1
  60. package/dist/types/stateManagement/segmentation/polySeg/Labelmap/convertSurfaceToLabelmap.d.ts.map +1 -1
  61. package/dist/types/tools/annotation/CobbAngleTool.d.ts.map +1 -1
  62. package/dist/types/tools/segmentation/strategies/BrushStrategy.d.ts +3 -2
  63. package/dist/types/tools/segmentation/strategies/BrushStrategy.d.ts.map +1 -1
  64. package/dist/types/tools/segmentation/strategies/compositions/dynamicThreshold.d.ts.map +1 -1
  65. package/dist/types/tools/segmentation/strategies/compositions/islandRemoval.d.ts.map +1 -1
  66. package/dist/types/tools/segmentation/strategies/compositions/threshold.d.ts.map +1 -1
  67. package/dist/types/tools/segmentation/strategies/utils/getStrategyData.d.ts +2 -3
  68. package/dist/types/tools/segmentation/strategies/utils/getStrategyData.d.ts.map +1 -1
  69. package/dist/types/utilities/pointInShapeCallback.d.ts.map +1 -1
  70. package/dist/types/utilities/segmentation/floodFill.d.ts.map +1 -1
  71. package/dist/types/utilities/segmentation/getSegmentAtLabelmapBorder.d.ts.map +1 -1
  72. package/dist/types/utilities/segmentation/getSegmentAtWorldPoint.d.ts.map +1 -1
  73. package/dist/umd/985.index.js +1 -1
  74. package/dist/umd/985.index.js.map +1 -1
  75. package/dist/umd/index.js +1 -1
  76. package/dist/umd/index.js.map +1 -1
  77. package/package.json +7 -3
  78. package/src/eventListeners/segmentation/imageChangeEventListener.ts +28 -13
  79. package/src/stateManagement/segmentation/polySeg/Labelmap/computeAndAddLabelmapRepresentation.ts +1 -1
  80. package/src/stateManagement/segmentation/polySeg/Labelmap/convertSurfaceToLabelmap.ts +3 -1
  81. package/src/tools/annotation/CobbAngleTool.ts +62 -56
  82. package/src/tools/segmentation/BrushTool.ts +1 -1
  83. package/src/tools/segmentation/strategies/BrushStrategy.ts +25 -4
  84. package/src/tools/segmentation/strategies/compositions/dynamicThreshold.ts +12 -2
  85. package/src/tools/segmentation/strategies/compositions/islandRemoval.ts +1 -2
  86. package/src/tools/segmentation/strategies/compositions/threshold.ts +8 -6
  87. package/src/tools/segmentation/strategies/utils/getStrategyData.ts +20 -5
  88. package/src/utilities/pointInShapeCallback.ts +2 -0
  89. package/src/utilities/segmentation/floodFill.ts +44 -31
  90. package/src/utilities/segmentation/getSegmentAtLabelmapBorder.ts +6 -5
  91. package/src/utilities/segmentation/getSegmentAtWorldPoint.ts +6 -5
package/dist/esm/tools/annotation/CobbAngleTool.js.map CHANGED
@@ -1 +1 @@
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package/dist/esm/tools/segmentation/BrushTool.js CHANGED
@@ -150,7 +150,7 @@ class BrushTool extends BaseTool {
150
150
  delta < dragMoveDistance) {
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151
  return;
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152
  }
153
- this._previewData.preview = this.applyActiveStrategy(enabledElement, this.getOperationData());
153
+ this._previewData.preview = this.applyActiveStrategy(enabledElement, this.getOperationData(element));
154
154
  this._previewData.element = element;
155
155
  this._previewData.timerStart = Date.now() + dragTimeMs;
156
156
  this._previewData.isDrag = true;
package/dist/esm/tools/segmentation/BrushTool.js.map CHANGED
@@ -1 +1 @@
1
- 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package/dist/esm/tools/segmentation/strategies/BrushStrategy.js CHANGED
@@ -11,7 +11,10 @@ export default class BrushStrategy {
11
11
  this._fill = [];
12
12
  this._onInteractionStart = [];
13
13
  this.fill = (enabledElement, operationData) => {
14
- const initializedData = this.initialize(enabledElement, operationData);
14
+ const initializedData = this.initialize(enabledElement, operationData, StrategyCallbacks.Fill);
15
+ if (!initializedData) {
16
+ return;
17
+ }
15
18
  const { strategySpecificConfiguration = {}, centerIJK } = initializedData;
16
19
  if (csUtils.isEqual(centerIJK, strategySpecificConfiguration.centerIJK)) {
17
20
  return operationData.preview;
@@ -34,6 +37,9 @@ export default class BrushStrategy {
34
37
  return;
35
38
  }
36
39
  const initializedData = this.initialize(enabledElement, operationData);
40
+ if (!initializedData) {
41
+ return;
42
+ }
37
43
  this._onInteractionStart.forEach((func) => func.call(this, initializedData));
38
44
  };
39
45
  this.configurationName = name;
@@ -68,7 +74,7 @@ export default class BrushStrategy {
68
74
  [StrategyCallbacks.Preview]: addSingletonMethod(StrategyCallbacks.Preview, false),
69
75
  compositions: null,
70
76
  }; }
71
- initialize(enabledElement, operationData) {
77
+ initialize(enabledElement, operationData, operationName) {
72
78
  const { viewport } = enabledElement;
73
79
  const data = getStrategyData({ operationData, viewport });
74
80
  if (!data) {
@@ -92,6 +98,7 @@ export default class BrushStrategy {
92
98
  const previewEnabled = !!operationData.previewColors;
93
99
  const previewSegmentIndex = previewEnabled ? 255 : undefined;
94
100
  const initializedData = {
101
+ operationName,
95
102
  previewSegmentIndex,
96
103
  ...operationData,
97
104
  enabledElement,
@@ -114,7 +121,7 @@ function addListMethod(name, createInitialized) {
114
121
  brushStrategy[listName].push(func);
115
122
  brushStrategy[name] ||= createInitialized
116
123
  ? (enabledElement, operationData) => {
117
- const initializedData = brushStrategy[createInitialized](enabledElement, operationData);
124
+ const initializedData = brushStrategy[createInitialized](enabledElement, operationData, name);
118
125
  brushStrategy[listName].forEach((func) => func.call(brushStrategy, initializedData));
119
126
  }
120
127
  : (operationData) => {
package/dist/esm/tools/segmentation/strategies/BrushStrategy.js.map CHANGED
@@ -1 +1 @@
1
- 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package/dist/esm/tools/segmentation/strategies/compositions/dynamicThreshold.js CHANGED
@@ -1,11 +1,16 @@
1
+ import { vec3 } from 'gl-matrix';
1
2
  import StrategyCallbacks from '../../../../enums/StrategyCallbacks';
2
3
  export default {
3
4
  [StrategyCallbacks.Initialize]: (operationData) => {
4
- const { centerIJK, strategySpecificConfiguration, segmentationVoxelManager: segmentationVoxelManager, imageVoxelManager: imageVoxelManager, segmentIndex, } = operationData;
5
+ const { operationName, centerIJK, strategySpecificConfiguration, segmentationVoxelManager: segmentationVoxelManager, imageVoxelManager: imageVoxelManager, segmentIndex, } = operationData;
5
6
  const { THRESHOLD } = strategySpecificConfiguration;
6
7
  if (!THRESHOLD?.isDynamic || !centerIJK || !segmentIndex) {
7
8
  return;
8
9
  }
10
+ if (operationName === StrategyCallbacks.RejectPreview ||
11
+ operationName === StrategyCallbacks.OnInteractionEnd) {
12
+ return;
13
+ }
9
14
  const { boundsIJK } = segmentationVoxelManager;
10
15
  const { threshold: oldThreshold, dynamicRadius = 0 } = THRESHOLD;
11
16
  const useDelta = oldThreshold ? 0 : dynamicRadius;
@@ -18,8 +23,9 @@ export default {
18
23
  });
19
24
  const threshold = oldThreshold || [Infinity, -Infinity];
20
25
  const callback = ({ value }) => {
21
- threshold[0] = Math.min(value, threshold[0]);
22
- threshold[1] = Math.max(value, threshold[1]);
26
+ const gray = Array.isArray(value) ? vec3.len(value) : value;
27
+ threshold[0] = Math.min(gray, threshold[0]);
28
+ threshold[1] = Math.max(gray, threshold[1]);
23
29
  };
24
30
  imageVoxelManager.forEach(callback, { boundsIJK: nestedBounds });
25
31
  operationData.strategySpecificConfiguration.THRESHOLD.threshold = threshold;
package/dist/esm/tools/segmentation/strategies/compositions/dynamicThreshold.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"dynamicThreshold.js","sourceRoot":"","sources":["../../../../../../src/tools/segmentation/strategies/compositions/dynamicThreshold.ts"],"names":[],"mappings":"AAEA,OAAO,iBAAiB,MAAM,qCAAqC,CAAC;AAUpE,eAAe;IACb,CAAC,iBAAiB,CAAC,UAAU,CAAC,EAAE,CAAC,aAAuC,EAAE,EAAE;QAC1E,MAAM,EACJ,SAAS,EACT,6BAA6B,EAC7B,wBAAwB,EAAE,wBAAwB,EAClD,iBAAiB,EAAE,iBAAiB,EACpC,YAAY,GACb,GAAG,aAAa,CAAC;QAClB,MAAM,EAAE,SAAS,EAAE,GAAG,6BAA6B,CAAC;QAEpD,IAAI,CAAC,SAAS,EAAE,SAAS,IAAI,CAAC,SAAS,IAAI,CAAC,YAAY,EAAE;YACxD,OAAO;SACR;QAED,MAAM,EAAE,SAAS,EAAE,GAAG,wBAAwB,CAAC;QAC/C,MAAM,EAAE,SAAS,EAAE,YAAY,EAAE,aAAa,GAAG,CAAC,EAAE,GAAG,SAAS,CAAC;QACjE,MAAM,QAAQ,GAAG,YAAY,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,aAAa,CAAC;QAClD,MAAM,YAAY,GAAG,SAAS,CAAC,GAAG,CAAC,CAAC,GAAG,EAAE,GAAG,EAAE,EAAE;YAC9C,MAAM,CAAC,GAAG,EAAE,GAAG,CAAC,GAAG,GAAG,CAAC;YACvB,OAAO;gBACL,IAAI,CAAC,GAAG,CAAC,GAAG,EAAE,SAAS,CAAC,GAAG,CAAC,GAAG,QAAQ,CAAC;gBACxC,IAAI,CAAC,GAAG,CAAC,GAAG,EAAE,SAAS,CAAC,GAAG,CAAC,GAAG,QAAQ,CAAC;aACzC,CAAC;QACJ,CAAC,CAAc,CAAC;QAEhB,MAAM,SAAS,GAAG,YAAY,IAAI,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,CAAC;QACxD,MAAM,QAAQ,GAAG,CAAC,EAAE,KAAK,EAAE,EAAE,EAAE;YAC7B,SAAS,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,KAAK,EAAE,SAAS,CAAC,CAAC,CAAC,CAAC,CAAC;YAC7C,SAAS,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,KAAK,EAAE,SAAS,CAAC,CAAC,CAAC,CAAC,CAAC;QAC/C,CAAC,CAAC;QACF,iBAAiB,CAAC,OAAO,CAAC,QAAQ,EAAE,EAAE,SAAS,EAAE,YAAY,EAAE,CAAC,CAAC;QAEjE,aAAa,CAAC,6BAA6B,CAAC,SAAS,CAAC,SAAS,GAAG,SAAS,CAAC;IAC9E,CAAC;IAED,CAAC,iBAAiB,CAAC,kBAAkB,CAAC,EAAE,CACtC,aAAuC,EACvC,EAAE;QACF,MAAM,EAAE,6BAA6B,EAAE,OAAO,EAAE,GAAG,aAAa,CAAC;QACjE,IAAI,CAAC,6BAA6B,EAAE,SAAS,EAAE,SAAS,IAAI,CAAC,OAAO,EAAE;YACpE,OAAO;SACR;QACD,6BAA6B,CAAC,SAAS,CAAC,SAAS,GAAG,IAAI,CAAC;IAC3D,CAAC;CACF,CAAC"}
1
+ {"version":3,"file":"dynamicThreshold.js","sourceRoot":"","sources":["../../../../../../src/tools/segmentation/strategies/compositions/dynamicThreshold.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;AAGjC,OAAO,iBAAiB,MAAM,qCAAqC,CAAC;AAUpE,eAAe;IACb,CAAC,iBAAiB,CAAC,UAAU,CAAC,EAAE,CAAC,aAAuC,EAAE,EAAE;QAC1E,MAAM,EACJ,aAAa,EACb,SAAS,EACT,6BAA6B,EAC7B,wBAAwB,EAAE,wBAAwB,EAClD,iBAAiB,EAAE,iBAAiB,EACpC,YAAY,GACb,GAAG,aAAa,CAAC;QAClB,MAAM,EAAE,SAAS,EAAE,GAAG,6BAA6B,CAAC;QAEpD,IAAI,CAAC,SAAS,EAAE,SAAS,IAAI,CAAC,SAAS,IAAI,CAAC,YAAY,EAAE;YACxD,OAAO;SACR;QACD,IACE,aAAa,KAAK,iBAAiB,CAAC,aAAa;YACjD,aAAa,KAAK,iBAAiB,CAAC,gBAAgB,EACpD;YACA,OAAO;SACR;QAED,MAAM,EAAE,SAAS,EAAE,GAAG,wBAAwB,CAAC;QAC/C,MAAM,EAAE,SAAS,EAAE,YAAY,EAAE,aAAa,GAAG,CAAC,EAAE,GAAG,SAAS,CAAC;QACjE,MAAM,QAAQ,GAAG,YAAY,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,aAAa,CAAC;QAClD,MAAM,YAAY,GAAG,SAAS,CAAC,GAAG,CAAC,CAAC,GAAG,EAAE,GAAG,EAAE,EAAE;YAC9C,MAAM,CAAC,GAAG,EAAE,GAAG,CAAC,GAAG,GAAG,CAAC;YACvB,OAAO;gBACL,IAAI,CAAC,GAAG,CAAC,GAAG,EAAE,SAAS,CAAC,GAAG,CAAC,GAAG,QAAQ,CAAC;gBACxC,IAAI,CAAC,GAAG,CAAC,GAAG,EAAE,SAAS,CAAC,GAAG,CAAC,GAAG,QAAQ,CAAC;aACzC,CAAC;QACJ,CAAC,CAAc,CAAC;QAEhB,MAAM,SAAS,GAAG,YAAY,IAAI,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,CAAC;QAExD,MAAM,QAAQ,GAAG,CAAC,EAAE,KAAK,EAAE,EAAE,EAAE;YAC7B,MAAM,IAAI,GAAG,KAAK,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,KAAY,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC;YACnE,SAAS,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,IAAI,EAAE,SAAS,CAAC,CAAC,CAAC,CAAC,CAAC;YAC5C,SAAS,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,IAAI,EAAE,SAAS,CAAC,CAAC,CAAC,CAAC,CAAC;QAC9C,CAAC,CAAC;QACF,iBAAiB,CAAC,OAAO,CAAC,QAAQ,EAAE,EAAE,SAAS,EAAE,YAAY,EAAE,CAAC,CAAC;QAEjE,aAAa,CAAC,6BAA6B,CAAC,SAAS,CAAC,SAAS,GAAG,SAAS,CAAC;IAC9E,CAAC;IAED,CAAC,iBAAiB,CAAC,kBAAkB,CAAC,EAAE,CACtC,aAAuC,EACvC,EAAE;QACF,MAAM,EAAE,6BAA6B,EAAE,OAAO,EAAE,GAAG,aAAa,CAAC;QACjE,IAAI,CAAC,6BAA6B,EAAE,SAAS,EAAE,SAAS,IAAI,CAAC,OAAO,EAAE;YACpE,OAAO;SACR;QACD,6BAA6B,CAAC,SAAS,CAAC,SAAS,GAAG,IAAI,CAAC;IAC3D,CAAC;CACF,CAAC"}
package/dist/esm/tools/segmentation/strategies/compositions/islandRemoval.js CHANGED
@@ -54,7 +54,7 @@ export default {
54
54
  floodedSet.add(index);
55
55
  floodedCount++;
56
56
  };
57
- clickedPoints.forEach((clickedPoint, index) => {
57
+ clickedPoints.forEach((clickedPoint) => {
58
58
  if (getter(...clickedPoint) === 1) {
59
59
  floodFill(getter, clickedPoint, {
60
60
  onFlood,
package/dist/esm/tools/segmentation/strategies/compositions/islandRemoval.js.map CHANGED
@@ -1 +1 @@
1
- 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1
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package/dist/esm/tools/segmentation/strategies/compositions/threshold.js CHANGED
@@ -1,18 +1,22 @@
1
+ import { vec3 } from 'gl-matrix';
1
2
  import StrategyCallbacks from '../../../../enums/StrategyCallbacks';
2
3
  export default {
3
4
  [StrategyCallbacks.CreateIsInThreshold]: (operationData) => {
4
- const { imageVoxelManager: imageVoxelManager, strategySpecificConfiguration, segmentIndex, } = operationData;
5
+ const { imageVoxelManager, strategySpecificConfiguration, segmentIndex } = operationData;
5
6
  if (!strategySpecificConfiguration || !segmentIndex) {
6
7
  return;
7
8
  }
8
9
  return (index) => {
9
10
  const { THRESHOLD, THRESHOLD_INSIDE_CIRCLE } = strategySpecificConfiguration;
10
11
  const voxelValue = imageVoxelManager.getAtIndex(index);
12
+ const gray = Array.isArray(voxelValue)
13
+ ? vec3.length(voxelValue)
14
+ : voxelValue;
11
15
  const { threshold } = THRESHOLD || THRESHOLD_INSIDE_CIRCLE || {};
12
16
  if (!threshold?.length) {
13
17
  return true;
14
18
  }
15
- return threshold[0] <= voxelValue && voxelValue <= threshold[1];
19
+ return threshold[0] <= gray && gray <= threshold[1];
16
20
  };
17
21
  },
18
22
  };
package/dist/esm/tools/segmentation/strategies/compositions/threshold.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"threshold.js","sourceRoot":"","sources":["../../../../../../src/tools/segmentation/strategies/compositions/threshold.ts"],"names":[],"mappings":"AACA,OAAO,iBAAiB,MAAM,qCAAqC,CAAC;AAOpE,eAAe;IACb,CAAC,iBAAiB,CAAC,mBAAmB,CAAC,EAAE,CACvC,aAAuC,EACvC,EAAE;QACF,MAAM,EACJ,iBAAiB,EAAE,iBAAiB,EACpC,6BAA6B,EAC7B,YAAY,GACb,GAAG,aAAa,CAAC;QAClB,IAAI,CAAC,6BAA6B,IAAI,CAAC,YAAY,EAAE;YACnD,OAAO;SACR;QACD,OAAO,CAAC,KAAK,EAAE,EAAE;YACf,MAAM,EAAE,SAAS,EAAE,uBAAuB,EAAE,GAC1C,6BAA6B,CAAC;YAEhC,MAAM,UAAU,GAAG,iBAAiB,CAAC,UAAU,CAAC,KAAK,CAAC,CAAC;YAGvD,MAAM,EAAE,SAAS,EAAE,GAAG,SAAS,IAAI,uBAAuB,IAAI,EAAE,CAAC;YACjE,IAAI,CAAC,SAAS,EAAE,MAAM,EAAE;gBACtB,OAAO,IAAI,CAAC;aACb;YACD,OAAO,SAAS,CAAC,CAAC,CAAC,IAAI,UAAU,IAAI,UAAU,IAAI,SAAS,CAAC,CAAC,CAAC,CAAC;QAClE,CAAC,CAAC;IACJ,CAAC;CACF,CAAC"}
1
+ {"version":3,"file":"threshold.js","sourceRoot":"","sources":["../../../../../../src/tools/segmentation/strategies/compositions/threshold.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;AAGjC,OAAO,iBAAiB,MAAM,qCAAqC,CAAC;AAOpE,eAAe;IACb,CAAC,iBAAiB,CAAC,mBAAmB,CAAC,EAAE,CACvC,aAAuC,EACvC,EAAE;QACF,MAAM,EAAE,iBAAiB,EAAE,6BAA6B,EAAE,YAAY,EAAE,GACtE,aAAa,CAAC;QAChB,IAAI,CAAC,6BAA6B,IAAI,CAAC,YAAY,EAAE;YACnD,OAAO;SACR;QACD,OAAO,CAAC,KAAK,EAAE,EAAE;YACf,MAAM,EAAE,SAAS,EAAE,uBAAuB,EAAE,GAC1C,6BAA6B,CAAC;YAEhC,MAAM,UAAU,GAAG,iBAAiB,CAAC,UAAU,CAAC,KAAK,CAAC,CAAC;YACvD,MAAM,IAAI,GAAG,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC;gBACpC,CAAC,CAAC,IAAI,CAAC,MAAM,CAAC,UAA0B,CAAC;gBACzC,CAAC,CAAC,UAAU,CAAC;YAGf,MAAM,EAAE,SAAS,EAAE,GAAG,SAAS,IAAI,uBAAuB,IAAI,EAAE,CAAC;YACjE,IAAI,CAAC,SAAS,EAAE,MAAM,EAAE;gBACtB,OAAO,IAAI,CAAC;aACb;YACD,OAAO,SAAS,CAAC,CAAC,CAAC,IAAI,IAAI,IAAI,IAAI,IAAI,SAAS,CAAC,CAAC,CAAC,CAAC;QACtD,CAAC,CAAC;IACJ,CAAC;CACF,CAAC"}
package/dist/esm/tools/segmentation/strategies/utils/getStrategyData.js CHANGED
@@ -5,12 +5,15 @@ function getStrategyData({ operationData, viewport }) {
5
5
  let segmentationImageData, segmentationScalarData, imageScalarData;
6
6
  let imageDimensions;
7
7
  let segmentationDimensions;
8
+ let imageVoxelManager;
9
+ let segmentationVoxelManager;
8
10
  if (isVolumeSegmentation(operationData, viewport)) {
9
11
  const { volumeId, referencedVolumeId } = operationData;
10
12
  const segmentationVolume = cache.getVolume(volumeId);
11
13
  if (!segmentationVolume) {
12
14
  return;
13
15
  }
16
+ segmentationVoxelManager = segmentationVolume.voxelManager;
14
17
  if (referencedVolumeId) {
15
18
  const imageVolume = cache.getVolume(referencedVolumeId);
16
19
  imageScalarData = imageVolume.getScalarData();
@@ -30,22 +33,34 @@ function getStrategyData({ operationData, viewport }) {
30
33
  return;
31
34
  }
32
35
  const actor = viewport.getActor(segmentationRepresentationUID);
36
+ if (!actor) {
37
+ return;
38
+ }
33
39
  segmentationImageData = actor.actor.getMapper().getInputData();
40
+ segmentationVoxelManager = segmentationImageData.voxelManager;
34
41
  const currentSegmentationImageId = imageIdReferenceMap.get(currentImageId);
35
42
  const segmentationImage = cache.getImage(currentSegmentationImageId);
36
- segmentationScalarData = segmentationImage.getPixelData();
43
+ if (!segmentationImage) {
44
+ return;
45
+ }
46
+ segmentationScalarData = segmentationImage.getPixelData?.();
37
47
  const image = cache.getImage(currentImageId);
38
- imageScalarData = image.getPixelData();
39
- imageDimensions = [image.columns, image.rows, 1];
48
+ const imageData = image ? null : viewport.getImageData();
49
+ imageScalarData = image?.getPixelData() || imageData.getScalarData();
50
+ imageDimensions = image
51
+ ? [image.columns, image.rows, 1]
52
+ : imageData.dimensions;
40
53
  segmentationDimensions = [
41
54
  segmentationImage.columns,
42
55
  segmentationImage.rows,
43
56
  1,
44
57
  ];
58
+ imageVoxelManager = image?.voxelManager;
45
59
  }
46
- const segmentationVoxelManager = VoxelManager.createVolumeVoxelManager(segmentationDimensions, segmentationScalarData);
47
- const imageVoxelManager = imageDimensions &&
48
- VoxelManager.createVolumeVoxelManager(imageDimensions, imageScalarData);
60
+ segmentationVoxelManager ||= VoxelManager.createVolumeVoxelManager(segmentationDimensions, segmentationScalarData);
61
+ imageVoxelManager ||=
62
+ imageDimensions &&
63
+ VoxelManager.createVolumeVoxelManager(imageDimensions, imageScalarData);
49
64
  return {
50
65
  segmentationImageData,
51
66
  segmentationScalarData,
package/dist/esm/tools/segmentation/strategies/utils/getStrategyData.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"getStrategyData.js","sourceRoot":"","sources":["../../../../../../src/tools/segmentation/strategies/utils/getStrategyData.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,SAAS,EAAE,MAAM,qBAAqB,CAAC;AAEvD,OAAO,EAAE,oBAAoB,EAAE,MAAM,oBAAoB,CAAC;AAG1D,MAAM,EAAE,YAAY,EAAE,GAAG,SAAS,CAAC;AAEnC,SAAS,eAAe,CAAC,EAAE,aAAa,EAAE,QAAQ,EAAE;IAClD,IAAI,qBAAqB,EAAE,sBAAsB,EAAE,eAAe,CAAC;IACnE,IAAI,eAA6B,CAAC;IAClC,IAAI,sBAAoC,CAAC;IACzC,IAAI,oBAAoB,CAAC,aAAa,EAAE,QAAQ,CAAC,EAAE;QACjD,MAAM,EAAE,QAAQ,EAAE,kBAAkB,EAAE,GAAG,aAAa,CAAC;QAEvD,MAAM,kBAAkB,GAAG,KAAK,CAAC,SAAS,CAAC,QAAQ,CAAC,CAAC;QAErD,IAAI,CAAC,kBAAkB,EAAE;YACvB,OAAO;SACR;QAID,IAAI,kBAAkB,EAAE;YACtB,MAAM,WAAW,GAAG,KAAK,CAAC,SAAS,CAAC,kBAAkB,CAAC,CAAC;YACxD,eAAe,GAAG,WAAW,CAAC,aAAa,EAAE,CAAC;YAC9C,eAAe,GAAG,WAAW,CAAC,UAAU,CAAC;SAC1C;QAED,CAAC,EAAE,SAAS,EAAE,qBAAqB,EAAE,GAAG,kBAAkB,CAAC,CAAC;QAC5D,sBAAsB,GAAG,kBAAkB,CAAC,aAAa,EAAE,CAAC;QAC5D,sBAAsB,GAAG,kBAAkB,CAAC,UAAU,CAAC;KACxD;SAAM;QACL,MAAM,EAAE,mBAAmB,EAAE,6BAA6B,EAAE,GAC1D,aAA+C,CAAC;QAElD,IAAI,CAAC,mBAAmB,EAAE;YACxB,OAAO;SACR;QAED,MAAM,cAAc,GAAG,QAAQ,CAAC,iBAAiB,EAAE,CAAC;QACpD,IAAI,CAAC,cAAc,EAAE;YACnB,OAAO;SACR;QAKD,MAAM,KAAK,GAAG,QAAQ,CAAC,QAAQ,CAAC,6BAA6B,CAAC,CAAC;QAC/D,qBAAqB,GAAG,KAAK,CAAC,KAAK,CAAC,SAAS,EAAE,CAAC,YAAY,EAAE,CAAC;QAC/D,MAAM,0BAA0B,GAAG,mBAAmB,CAAC,GAAG,CAAC,cAAc,CAAC,CAAC;QAE3E,MAAM,iBAAiB,GAAG,KAAK,CAAC,QAAQ,CAAC,0BAA0B,CAAC,CAAC;QACrE,sBAAsB,GAAG,iBAAiB,CAAC,YAAY,EAAE,CAAC;QAE1D,MAAM,KAAK,GAAG,KAAK,CAAC,QAAQ,CAAC,cAAc,CAAC,CAAC;QAK7C,eAAe,GAAG,KAAK,CAAC,YAAY,EAAE,CAAC;QACvC,eAAe,GAAG,CAAC,KAAK,CAAC,OAAO,EAAE,KAAK,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC;QACjD,sBAAsB,GAAG;YACvB,iBAAiB,CAAC,OAAO;YACzB,iBAAiB,CAAC,IAAI;YACtB,CAAC;SACF,CAAC;KACH;IAED,MAAM,wBAAwB,GAAG,YAAY,CAAC,wBAAwB,CACpE,sBAAsB,EACtB,sBAAsB,CACvB,CAAC;IAEF,MAAM,iBAAiB,GACrB,eAAe;QACf,YAAY,CAAC,wBAAwB,CAAC,eAAe,EAAE,eAAe,CAAC,CAAC;IAE1E,OAAO;QACL,qBAAqB;QACrB,sBAAsB;QACtB,wBAAwB;QACxB,eAAe;QACf,iBAAiB;KAClB,CAAC;AACJ,CAAC;AAED,OAAO,EAAE,eAAe,EAAE,CAAC"}
1
+ {"version":3,"file":"getStrategyData.js","sourceRoot":"","sources":["../../../../../../src/tools/segmentation/strategies/utils/getStrategyData.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,SAAS,EAAE,MAAM,qBAAqB,CAAC;AAEvD,OAAO,EAAE,oBAAoB,EAAE,MAAM,oBAAoB,CAAC;AAG1D,MAAM,EAAE,YAAY,EAAE,GAAG,SAAS,CAAC;AAEnC,SAAS,eAAe,CAAC,EAAE,aAAa,EAAE,QAAQ,EAAE;IAClD,IAAI,qBAAqB,EAAE,sBAAsB,EAAE,eAAe,CAAC;IACnE,IAAI,eAA6B,CAAC;IAClC,IAAI,sBAAoC,CAAC;IACzC,IAAI,iBAAiB,CAAC;IACtB,IAAI,wBAAwB,CAAC;IAE7B,IAAI,oBAAoB,CAAC,aAAa,EAAE,QAAQ,CAAC,EAAE;QACjD,MAAM,EAAE,QAAQ,EAAE,kBAAkB,EAAE,GAAG,aAAa,CAAC;QAEvD,MAAM,kBAAkB,GAAG,KAAK,CAAC,SAAS,CAAC,QAAQ,CAAC,CAAC;QAErD,IAAI,CAAC,kBAAkB,EAAE;YACvB,OAAO;SACR;QACD,wBAAwB,GAAG,kBAAkB,CAAC,YAAY,CAAC;QAI3D,IAAI,kBAAkB,EAAE;YACtB,MAAM,WAAW,GAAG,KAAK,CAAC,SAAS,CAAC,kBAAkB,CAAC,CAAC;YACxD,eAAe,GAAG,WAAW,CAAC,aAAa,EAAE,CAAC;YAC9C,eAAe,GAAG,WAAW,CAAC,UAAU,CAAC;SAC1C;QAED,CAAC,EAAE,SAAS,EAAE,qBAAqB,EAAE,GAAG,kBAAkB,CAAC,CAAC;QAC5D,sBAAsB,GAAG,kBAAkB,CAAC,aAAa,EAAE,CAAC;QAC5D,sBAAsB,GAAG,kBAAkB,CAAC,UAAU,CAAC;KACxD;SAAM;QACL,MAAM,EAAE,mBAAmB,EAAE,6BAA6B,EAAE,GAC1D,aAA+C,CAAC;QAElD,IAAI,CAAC,mBAAmB,EAAE;YACxB,OAAO;SACR;QAED,MAAM,cAAc,GAAG,QAAQ,CAAC,iBAAiB,EAAE,CAAC;QACpD,IAAI,CAAC,cAAc,EAAE;YACnB,OAAO;SACR;QAKD,MAAM,KAAK,GAAG,QAAQ,CAAC,QAAQ,CAAC,6BAA6B,CAAC,CAAC;QAC/D,IAAI,CAAC,KAAK,EAAE;YACV,OAAO;SACR;QACD,qBAAqB,GAAG,KAAK,CAAC,KAAK,CAAC,SAAS,EAAE,CAAC,YAAY,EAAE,CAAC;QAC/D,wBAAwB,GAAG,qBAAqB,CAAC,YAAY,CAAC;QAC9D,MAAM,0BAA0B,GAAG,mBAAmB,CAAC,GAAG,CAAC,cAAc,CAAC,CAAC;QAE3E,MAAM,iBAAiB,GAAG,KAAK,CAAC,QAAQ,CAAC,0BAA0B,CAAC,CAAC;QACrE,IAAI,CAAC,iBAAiB,EAAE;YACtB,OAAO;SACR;QACD,sBAAsB,GAAG,iBAAiB,CAAC,YAAY,EAAE,EAAE,CAAC;QAE5D,MAAM,KAAK,GAAG,KAAK,CAAC,QAAQ,CAAC,cAAc,CAAC,CAAC;QAC7C,MAAM,SAAS,GAAG,KAAK,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,QAAQ,CAAC,YAAY,EAAE,CAAC;QAKzD,eAAe,GAAG,KAAK,EAAE,YAAY,EAAE,IAAI,SAAS,CAAC,aAAa,EAAE,CAAC;QACrE,eAAe,GAAG,KAAK;YACrB,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,EAAE,KAAK,CAAC,IAAI,EAAE,CAAC,CAAC;YAChC,CAAC,CAAC,SAAS,CAAC,UAAU,CAAC;QACzB,sBAAsB,GAAG;YACvB,iBAAiB,CAAC,OAAO;YACzB,iBAAiB,CAAC,IAAI;YACtB,CAAC;SACF,CAAC;QACF,iBAAiB,GAAG,KAAK,EAAE,YAAY,CAAC;KACzC;IAED,wBAAwB,KAAK,YAAY,CAAC,wBAAwB,CAChE,sBAAsB,EACtB,sBAAsB,CACvB,CAAC;IAEF,iBAAiB;QACf,eAAe;YACf,YAAY,CAAC,wBAAwB,CAAC,eAAe,EAAE,eAAe,CAAC,CAAC;IAE1E,OAAO;QACL,qBAAqB;QACrB,sBAAsB;QACtB,wBAAwB;QACxB,eAAe;QACf,iBAAiB;KAClB,CAAC;AACJ,CAAC;AAED,OAAO,EAAE,eAAe,EAAE,CAAC"}
package/dist/esm/utilities/pointInShapeCallback.js CHANGED
@@ -2,6 +2,7 @@ import { vec3 } from 'gl-matrix';
2
2
  export default function pointInShapeCallback(imageData, pointInShapeFn, callback, boundsIJK) {
3
3
  let iMin, iMax, jMin, jMax, kMin, kMax;
4
4
  let scalarData;
5
+ const { numComps } = imageData;
5
6
  if (imageData.getScalarData) {
6
7
  scalarData = imageData.getScalarData();
7
8
  }
@@ -34,7 +35,8 @@ export default function pointInShapeCallback(imageData, pointInShapeFn, callback
34
35
  const rowStep = vec3.fromValues(rowCosines[0] * rowSpacing, rowCosines[1] * rowSpacing, rowCosines[2] * rowSpacing);
35
36
  const columnStep = vec3.fromValues(columnCosines[0] * columnSpacing, columnCosines[1] * columnSpacing, columnCosines[2] * columnSpacing);
36
37
  const scanAxisStep = vec3.fromValues(scanAxisNormal[0] * scanAxisSpacing, scanAxisNormal[1] * scanAxisSpacing, scanAxisNormal[2] * scanAxisSpacing);
37
- const xMultiple = scalarData.length / dimensions[2] / dimensions[1] / dimensions[0];
38
+ const xMultiple = numComps ||
39
+ scalarData.length / dimensions[2] / dimensions[1] / dimensions[0];
38
40
  const yMultiple = dimensions[0] * xMultiple;
39
41
  const zMultiple = dimensions[1] * yMultiple;
40
42
  const pointsInShape = [];
package/dist/esm/utilities/pointInShapeCallback.js.map CHANGED
@@ -1 +1 @@
1
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1
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package/dist/esm/utilities/segmentation/floodFill.js CHANGED
@@ -1,14 +1,14 @@
1
1
  function floodFill(getter, seed, options = {}) {
2
2
  const onFlood = options.onFlood;
3
3
  const onBoundary = options.onBoundary;
4
- const equals = options.equals || defaultEquals;
4
+ const equals = options.equals;
5
5
  const diagonals = options.diagonals || false;
6
6
  const startNode = get(seed);
7
7
  const permutations = prunedPermutations();
8
8
  const stack = [];
9
9
  const flooded = [];
10
- const visits = {};
11
- const bounds = {};
10
+ const visits = new Set();
11
+ const bounds = new Map();
12
12
  stack.push({ currentArgs: seed });
13
13
  while (stack.length > 0) {
14
14
  flood(stack.pop());
@@ -33,14 +33,18 @@ function floodFill(getter, seed, options = {}) {
33
33
  }
34
34
  }
35
35
  function visited(key) {
36
- return visits[key] === true;
36
+ const [x, y, z = 0] = key;
37
+ const iKey = x + 32768 + 65536 * (y + 32768 + 65536 * (z + 32768));
38
+ return visits.has(iKey);
37
39
  }
38
40
  function markAsVisited(key) {
39
- visits[key] = true;
41
+ const [x, y, z = 0] = key;
42
+ const iKey = x + 32768 + 65536 * (y + 32768 + 65536 * (z + 32768));
43
+ visits.add(iKey);
40
44
  }
41
45
  function member(getArgs) {
42
- const node = safely(get, [getArgs]);
43
- return safely(equals, [node, startNode]);
46
+ const node = get(getArgs);
47
+ return equals ? equals(node, startNode) : node === startNode;
44
48
  }
45
49
  function markAsFlooded(getArgs) {
46
50
  flooded.push(getArgs);
@@ -49,7 +53,9 @@ function floodFill(getter, seed, options = {}) {
49
53
  }
50
54
  }
51
55
  function markAsBoundary(prevArgs) {
52
- bounds[prevArgs] = prevArgs;
56
+ const [x, y, z = 0] = prevArgs;
57
+ const iKey = x + 32768 + 65536 * (y + 32768 + 65536 * (z + 32768));
58
+ bounds.set(iKey, prevArgs);
53
59
  if (onBoundary) {
54
60
  onBoundary(...prevArgs);
55
61
  }
@@ -70,14 +76,6 @@ function floodFill(getter, seed, options = {}) {
70
76
  function get(getArgs) {
71
77
  return getter(...getArgs);
72
78
  }
73
- function safely(f, args) {
74
- try {
75
- return f(...args);
76
- }
77
- catch (error) {
78
- return;
79
- }
80
- }
81
79
  function prunedPermutations() {
82
80
  const permutations = permute(seed.length);
83
81
  return permutations.filter(function (perm) {
@@ -99,12 +97,8 @@ function floodFill(getter, seed, options = {}) {
99
97
  return perms;
100
98
  }
101
99
  function boundaries() {
102
- const array = [];
103
- for (const key in bounds) {
104
- if (bounds[key] !== undefined) {
105
- array.unshift(bounds[key]);
106
- }
107
- }
100
+ const array = Array.from(bounds.values());
101
+ array.reverse();
108
102
  return array;
109
103
  }
110
104
  }