npm - @cornerstonejs/tools - Versions diffs - 1.53.0 → 1.54.0 - Mend

@cornerstonejs/tools 1.53.0 → 1.54.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (713) hide show

package/dist/esm/tools/segmentation/SegmentSelectTool.js CHANGED Viewed

@@ -1,16 +1,20 @@
-import { cache, getEnabledElement, utilities as csUtils, } from '@cornerstonejs/core';
+import { getEnabledElement } from '@cornerstonejs/core';
 import { BaseTool } from '../base';
 import { triggerSegmentationModified } from '../../stateManagement/segmentation/triggerSegmentationEvents';
 import triggerAnnotationRenderForViewportIds from '../../utilities/triggerAnnotationRenderForViewportIds';
-import { isVolumeSegmentation } from './strategies/utils/stackVolumeCheck';
-import { getActiveSegmentation, getActiveSegmentationRepresentation, } from '../../stateManagement/segmentation/activeSegmentation';
+import { getActiveSegmentationRepresentation } from '../../stateManagement/segmentation/activeSegmentation';
 import RepresentationTypes from '../../enums/SegmentationRepresentations';
 import { setActiveSegmentIndex } from '../../stateManagement/segmentation/segmentIndex';
+import { getHoveredContourSegmentationAnnotation, getSegmentAtLabelmapBorder, getSegmentAtWorldPoint, } from '../../utilities/segmentation';
+import { state } from '../../store';
+import SegmentationRepresentations from '../../enums/SegmentationRepresentations';
 class SegmentSelectTool extends BaseTool {
     constructor(toolProps = {}, defaultToolProps = {
         supportedInteractionTypes: ['Mouse', 'Touch'],
         configuration: {
-            hoverTimeout: 750,
+            hoverTimeout: 100,
+            mode: SegmentSelectTool.SelectMode.Border,
+            searchRadius: 6,
         },
     }) {
         super(toolProps, defaultToolProps);
@@ -35,7 +39,14 @@ class SegmentSelectTool extends BaseTool {
         };
         this.hoverTimer = null;
     }
+    static { this.SelectMode = {
+        Inside: 'Inside',
+        Border: 'Border',
+    }; }
     _setActiveSegment(evt = {}) {
+        if (state.isInteractingWithTool) {
+            return;
+        }
         const { element, currentPoints } = evt.detail;
         const worldPoint = currentPoints.world;
         const enabledElement = getEnabledElement(element);
@@ -43,56 +54,55 @@ class SegmentSelectTool extends BaseTool {
             return;
         }
         const { viewport } = enabledElement;
-        const activeSegmentation = getActiveSegmentation(this.toolGroupId);
-        if (activeSegmentation.type === RepresentationTypes.Labelmap) {
-            this._setActiveSegmentLabelmap(activeSegmentation, worldPoint, viewport);
+        const activeSegmentationReps = getActiveSegmentationRepresentation(this.toolGroupId);
+        if (!activeSegmentationReps) {
+            return;
+        }
+        const supportedTypes = [
+            RepresentationTypes.Labelmap,
+            RepresentationTypes.Contour,
+        ];
+        if (supportedTypes.includes(activeSegmentationReps.type)) {
+            this._setActiveSegmentForType(activeSegmentationReps, worldPoint, viewport);
         }
         else {
-            throw Error('non-labelmap segmentation not supported yet');
+            console.warn('SegmentSelectTool does not support the current segmentation type.');
         }
     }
-    _setActiveSegmentLabelmap(activeSegmentation, worldPoint, viewport) {
+    _setActiveSegmentForType(activeSegmentationReps, worldPoint, viewport) {
         const imageDataInfo = viewport.getImageData();
         if (!imageDataInfo) {
             return;
         }
-        const labelmapData = activeSegmentation.representationData.LABELMAP;
+        const { segmentationId, type } = activeSegmentationReps;
         let hoveredSegmentIndex;
-        if (isVolumeSegmentation(activeSegmentation.representationData.LABELMAP)) {
-            const { volumeId } = labelmapData;
-            const segmentationVolume = cache.getVolume(volumeId);
-            if (!segmentationVolume) {
-                return;
-            }
-            hoveredSegmentIndex =
-                segmentationVolume.imageData.getScalarValueFromWorld(worldPoint);
+        if (this.configuration.mode === SegmentSelectTool.SelectMode.Inside) {
+            hoveredSegmentIndex = getSegmentAtWorldPoint(segmentationId, worldPoint, {
+                viewport,
+            });
         }
         else {
-            const { imageIdReferenceMap } = labelmapData;
-            const currentImageId = viewport.getCurrentImageId();
-            const segmentationImageId = imageIdReferenceMap.get(currentImageId);
-            const image = cache.getImage(segmentationImageId);
-            if (!image) {
-                return;
-            }
-            const activeSegmentationRepresentation = getActiveSegmentationRepresentation(this.toolGroupId);
-            if (!activeSegmentationRepresentation) {
-                return;
+            switch (type) {
+                case SegmentationRepresentations.Labelmap:
+                    hoveredSegmentIndex = getSegmentAtLabelmapBorder(segmentationId, worldPoint, {
+                        viewport,
+                        searchRadius: this.configuration.searchRadius,
+                    });
+                    break;
+                case SegmentationRepresentations.Contour:
+                    hoveredSegmentIndex =
+                        getHoveredContourSegmentationAnnotation(segmentationId);
+                    break;
             }
-            const segmentationActor = viewport.getActor(activeSegmentationRepresentation.segmentationRepresentationUID);
-            const imageData = segmentationActor?.actor.getMapper().getInputData();
-            const indexIJK = csUtils.transformWorldToIndex(imageData, worldPoint);
-            const flattenedIndex = indexIJK[0] + indexIJK[1] * image.columns;
-            const scalars = imageData.getPointData().getScalars().getData();
-            hoveredSegmentIndex = scalars[flattenedIndex];
         }
         if (!hoveredSegmentIndex || hoveredSegmentIndex === 0) {
             return;
         }
-        setActiveSegmentIndex(activeSegmentation.segmentationId, hoveredSegmentIndex);
+        setActiveSegmentIndex(segmentationId, hoveredSegmentIndex);
         const renderingEngine = viewport.getRenderingEngine();
-        triggerSegmentationModified(activeSegmentation.segmentationId);
-        triggerAnnotationRenderForViewportIds(renderingEngine, renderingEngine.getViewports().map((v) => v.id));
+        const viewportIds = renderingEngine.getViewports().map((v) => v.id);
+        triggerSegmentationModified(segmentationId);
+        triggerAnnotationRenderForViewportIds(renderingEngine, viewportIds);
     }
 }
 SegmentSelectTool.toolName = 'SegmentSelectTool';

package/dist/esm/tools/segmentation/SegmentSelectTool.js.map CHANGED Viewed

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package/dist/esm/tools/segmentation/SphereScissorsTool.js CHANGED Viewed

@@ -82,7 +82,7 @@ class SphereScissorsTool extends BaseTool {
             };
             const { representationData } = getSegmentation(segmentationId);
             const labelmapData = representationData[SegmentationRepresentations.Labelmap];
-            if (isVolumeSegmentation(labelmapData)) {
+            if (isVolumeSegmentation(labelmapData, viewport)) {
                 const { volumeId } = labelmapData;
                 const segmentation = cache.getVolume(volumeId);
                 this.editData = {

package/dist/esm/tools/segmentation/SphereScissorsTool.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/esm/tools/segmentation/strategies/BrushStrategy.js CHANGED Viewed

@@ -75,13 +75,15 @@ export default class BrushStrategy {
             console.warn('No data found for BrushStrategy');
             return operationData.preview;
         }
-        if (isVolumeSegmentation(operationData)) {
+        if (isVolumeSegmentation(operationData, viewport)) {
             const { referencedVolumeId, volumeId } = operationData;
-            const imageVolume = cache.getVolume(referencedVolumeId);
             const segmentation = cache.getVolume(volumeId);
-            if (!csUtils.isEqual(segmentation.dimensions, imageVolume.dimensions) ||
-                !csUtils.isEqual(segmentation.direction, imageVolume.direction)) {
-                throw new Error('Only source data the same dimensions/size/orientation as the segmentation currently supported.');
+            if (referencedVolumeId) {
+                const imageVolume = cache.getVolume(referencedVolumeId);
+                if (!csUtils.isEqual(segmentation.dimensions, imageVolume.dimensions) ||
+                    !csUtils.isEqual(segmentation.direction, imageVolume.direction)) {
+                    throw new Error('Only source data the same dimensions/size/orientation as the segmentation currently supported.');
+                }
             }
         }
         const { imageVoxelManager, segmentationVoxelManager, segmentationImageData, } = data;

package/dist/esm/tools/segmentation/strategies/BrushStrategy.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ 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package/dist/esm/tools/segmentation/strategies/compositions/regionFill.js CHANGED Viewed

@@ -14,7 +14,7 @@ export default {
                 setValue(operationData, data);
             }
             : (data) => setValue(operationData, data);
-        pointInShapeCallback(segmentationImageData, imageVoxelManager.isInObject, callback, segmentationVoxelManager.boundsIJK);
+        pointInShapeCallback(segmentationImageData, imageVoxelManager?.isInObject || segmentationVoxelManager.isInObject, callback, segmentationVoxelManager.boundsIJK);
         previewVoxelManager.addPoint(centerIJK);
     },
 };

package/dist/esm/tools/segmentation/strategies/compositions/regionFill.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"regionFill.js","sourceRoot":"","sources":["../../../../../../src/tools/segmentation/strategies/compositions/regionFill.ts"],"names":[],"mappings":"AACA,OAAO,oBAAoB,MAAM,4CAA4C,CAAC;AAC9E,OAAO,iBAAiB,MAAM,qCAAqC,CAAC;AAQpE,eAAe;IACb,CAAC,iBAAiB,CAAC,IAAI,CAAC,EAAE,CAAC,aAAuC,EAAE,EAAE;QACpE,MAAM,EACJ,cAAc,EACd,qBAAqB,EACrB,wBAAwB,EAAE,wBAAwB,EAClD,mBAAmB,EAAE,mBAAmB,EACxC,iBAAiB,EAAE,iBAAiB,EACpC,aAAa,EACb,SAAS,GACV,GAAG,aAAa,CAAC;QAClB,MAAM,iBAAiB,GACrB,aAAa,CAAC,mBAAmB,EAAE,CAAC,aAAa,CAAC,CAAC;QACrD,MAAM,EAAE,QAAQ,EAAE,GAAG,aAAa,CAAC;QAEnC,MAAM,QAAQ,GAAG,iBAAiB;YAChC,CAAC,CAAC,CAAC,IAAI,EAAE,EAAE;gBACP,MAAM,EAAE,KAAK,EAAE,KAAK,EAAE,GAAG,IAAI,CAAC;gBAC9B,IAAI,cAAc,CAAC,QAAQ,CAAC,KAAK,CAAC,IAAI,CAAC,iBAAiB,CAAC,KAAK,CAAC,EAAE;oBAC/D,OAAO;iBACR;gBACD,QAAQ,CAAC,aAAa,EAAE,IAAI,CAAC,CAAC;YAChC,CAAC;YACH,CAAC,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,QAAQ,CAAC,aAAa,EAAE,IAAI,CAAC,CAAC;QAE5C,oBAAoB,CAClB,qBAAgC,EAChC,iBAAiB,CAAC,UAAU,~~EAC5B~~,QAAQ,EACR,wBAAwB,CAAC,SAAS,CACnC,CAAC;QAEF,mBAAmB,CAAC,QAAQ,CAAC,SAAS,CAAC,CAAC;IAC1C,CAAC;CACF,CAAC"}
1	+ {"version":3,"file":"regionFill.js","sourceRoot":"","sources":["../../../../../../src/tools/segmentation/strategies/compositions/regionFill.ts"],"names":[],"mappings":"AACA,OAAO,oBAAoB,MAAM,4CAA4C,CAAC;AAC9E,OAAO,iBAAiB,MAAM,qCAAqC,CAAC;AAQpE,eAAe;IACb,CAAC,iBAAiB,CAAC,IAAI,CAAC,EAAE,CAAC,aAAuC,EAAE,EAAE;QACpE,MAAM,EACJ,cAAc,EACd,qBAAqB,EACrB,wBAAwB,EAAE,wBAAwB,EAClD,mBAAmB,EAAE,mBAAmB,EACxC,iBAAiB,EAAE,iBAAiB,EACpC,aAAa,EACb,SAAS,GACV,GAAG,aAAa,CAAC;QAClB,MAAM,iBAAiB,GACrB,aAAa,CAAC,mBAAmB,EAAE,CAAC,aAAa,CAAC,CAAC;QACrD,MAAM,EAAE,QAAQ,EAAE,GAAG,aAAa,CAAC;QAEnC,MAAM,QAAQ,GAAG,iBAAiB;YAChC,CAAC,CAAC,CAAC,IAAI,EAAE,EAAE;gBACP,MAAM,EAAE,KAAK,EAAE,KAAK,EAAE,GAAG,IAAI,CAAC;gBAC9B,IAAI,cAAc,CAAC,QAAQ,CAAC,KAAK,CAAC,IAAI,CAAC,iBAAiB,CAAC,KAAK,CAAC,EAAE;oBAC/D,OAAO;iBACR;gBACD,QAAQ,CAAC,aAAa,EAAE,IAAI,CAAC,CAAC;YAChC,CAAC;YACH,CAAC,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,QAAQ,CAAC,aAAa,EAAE,IAAI,CAAC,CAAC;QAE5C,oBAAoB,CAClB,qBAAgC,EAChC,iBAAiB,EAAE,UAAU,IAAI,wBAAwB,CAAC,UAAU,EACpE,QAAQ,EACR,wBAAwB,CAAC,SAAS,CACnC,CAAC;QAEF,mBAAmB,CAAC,QAAQ,CAAC,SAAS,CAAC,CAAC;IAC1C,CAAC;CACF,CAAC"}

package/dist/esm/tools/segmentation/strategies/fillSphere.js CHANGED Viewed

@@ -21,11 +21,20 @@ const sphereComposition = {
         operationData.centerIJK = transformWorldToIndex(segmentationImageData, center);
         const { boundsIJK: newBoundsIJK, topLeftWorld, bottomRightWorld, } = getSphereBoundsInfo(points.slice(0, 2), segmentationImageData, viewport);
         segmentationVoxelManager.boundsIJK = newBoundsIJK;
-        imageVoxelManager.isInObject = createEllipseInPoint({
-            topLeftWorld,
-            bottomRightWorld,
-            center,
-        });
+        if (imageVoxelManager) {
+            imageVoxelManager.isInObject = createEllipseInPoint({
+                topLeftWorld,
+                bottomRightWorld,
+                center,
+            });
+        }
+        else {
+            segmentationVoxelManager.isInObject = createEllipseInPoint({
+                topLeftWorld,
+                bottomRightWorld,
+                center,
+            });
+        }
     },
 };
 const SPHERE_STRATEGY = new BrushStrategy('Sphere', compositions.regionFill, compositions.setValue, sphereComposition, compositions.determineSegmentIndex, compositions.preview);

package/dist/esm/tools/segmentation/strategies/fillSphere.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"fillSphere.js","sourceRoot":"","sources":["../../../../../src/tools/segmentation/strategies/fillSphere.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,SAAS,IAAI,OAAO,EAAE,MAAM,qBAAqB,CAAC;AAC3D,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;AAEjC,OAAO,aAAa,MAAM,iBAAiB,CAAC;AAE5C,OAAO,YAAY,MAAM,gBAAgB,CAAC;AAC1C,OAAO,iBAAiB,MAAM,kCAAkC,CAAC;AACjE,OAAO,EAAE,oBAAoB,EAAE,MAAM,cAAc,CAAC;AACpD,MAAM,EAAE,qBAAqB,EAAE,GAAG,OAAO,CAAC;AAC1C,OAAO,EAAE,mBAAmB,EAAE,MAAM,wCAAwC,CAAC;AAC7E,MAAM,iBAAiB,GAAG;IACxB,CAAC,iBAAiB,CAAC,UAAU,CAAC,EAAE,CAAC,aAAuC,EAAE,EAAE;QAC1E,MAAM,EACJ,MAAM,EACN,iBAAiB,EAAE,iBAAiB,EACpC,QAAQ,EACR,qBAAqB,EACrB,wBAAwB,EAAE,wBAAwB,GACnD,GAAG,aAAa,CAAC;QAGlB,IAAI,CAAC,MAAM,EAAE;YACX,OAAO;SACR;QAED,MAAM,MAAM,GAAG,IAAI,CAAC,UAAU,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC;QACxC,MAAM,CAAC,OAAO,CAAC,CAAC,KAAK,EAAE,EAAE;YACvB,IAAI,CAAC,GAAG,CAAC,MAAM,EAAE,MAAM,EAAE,KAAK,CAAC,CAAC;QAClC,CAAC,CAAC,CAAC;QACH,IAAI,CAAC,KAAK,CAAC,MAAM,EAAE,MAAM,EAAE,CAAC,GAAG,MAAM,CAAC,MAAM,CAAC,CAAC;QAE9C,aAAa,CAAC,WAAW,GAAG,MAAsB,CAAC;QACnD,aAAa,CAAC,SAAS,GAAG,qBAAqB,CAC7C,qBAAqB,EACrB,MAAsB,CACvB,CAAC;QAEF,MAAM,EACJ,SAAS,EAAE,YAAY,EACvB,YAAY,EACZ,gBAAgB,GACjB,GAAG,mBAAmB,CACrB,MAAM,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAiC,EAClD,qBAAqB,EACrB,QAAQ,CACT,CAAC;QAEF,wBAAwB,CAAC,SAAS,GAAG,YAAY,CAAC;QAElD,iBAAiB,CAAC,UAAU,GAAG,oBAAoB,CAAC;~~YAClD~~,YAAY;~~YACZ~~,gBAAgB;~~YAChB~~,MAAM;~~SACP~~,CAAC,CAAC;~~IACL~~,CAAC;CACa,CAAC;AAEjB,MAAM,eAAe,GAAG,IAAI,aAAa,CACvC,QAAQ,EACR,YAAY,CAAC,UAAU,EACvB,YAAY,CAAC,QAAQ,EACrB,iBAAiB,EACjB,YAAY,CAAC,qBAAqB,EAClC,YAAY,CAAC,OAAO,CACrB,CAAC;AAQF,MAAM,gBAAgB,GAAG,eAAe,CAAC,gBAAgB,CAAC;AAE1D,MAAM,yBAAyB,GAAG,IAAI,aAAa,CACjD,iBAAiB,EACjB,GAAG,eAAe,CAAC,YAAY,EAC/B,YAAY,CAAC,gBAAgB,EAC7B,YAAY,CAAC,SAAS,EACtB,YAAY,CAAC,aAAa,CAC3B,CAAC;AASF,MAAM,qBAAqB,GAAG,yBAAyB,CAAC,gBAAgB,CAAC;AAQzE,MAAM,UAAU,iBAAiB;IAC/B,MAAM,IAAI,KAAK,CAAC,qCAAqC,CAAC,CAAC;AACzD,CAAC;AAED,OAAO,EAAE,gBAAgB,EAAE,qBAAqB,EAAE,eAAe,EAAE,CAAC"}
1	+ {"version":3,"file":"fillSphere.js","sourceRoot":"","sources":["../../../../../src/tools/segmentation/strategies/fillSphere.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,SAAS,IAAI,OAAO,EAAE,MAAM,qBAAqB,CAAC;AAC3D,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;AAEjC,OAAO,aAAa,MAAM,iBAAiB,CAAC;AAE5C,OAAO,YAAY,MAAM,gBAAgB,CAAC;AAC1C,OAAO,iBAAiB,MAAM,kCAAkC,CAAC;AACjE,OAAO,EAAE,oBAAoB,EAAE,MAAM,cAAc,CAAC;AACpD,MAAM,EAAE,qBAAqB,EAAE,GAAG,OAAO,CAAC;AAC1C,OAAO,EAAE,mBAAmB,EAAE,MAAM,wCAAwC,CAAC;AAC7E,MAAM,iBAAiB,GAAG;IACxB,CAAC,iBAAiB,CAAC,UAAU,CAAC,EAAE,CAAC,aAAuC,EAAE,EAAE;QAC1E,MAAM,EACJ,MAAM,EACN,iBAAiB,EAAE,iBAAiB,EACpC,QAAQ,EACR,qBAAqB,EACrB,wBAAwB,EAAE,wBAAwB,GACnD,GAAG,aAAa,CAAC;QAGlB,IAAI,CAAC,MAAM,EAAE;YACX,OAAO;SACR;QAED,MAAM,MAAM,GAAG,IAAI,CAAC,UAAU,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC;QACxC,MAAM,CAAC,OAAO,CAAC,CAAC,KAAK,EAAE,EAAE;YACvB,IAAI,CAAC,GAAG,CAAC,MAAM,EAAE,MAAM,EAAE,KAAK,CAAC,CAAC;QAClC,CAAC,CAAC,CAAC;QACH,IAAI,CAAC,KAAK,CAAC,MAAM,EAAE,MAAM,EAAE,CAAC,GAAG,MAAM,CAAC,MAAM,CAAC,CAAC;QAE9C,aAAa,CAAC,WAAW,GAAG,MAAsB,CAAC;QACnD,aAAa,CAAC,SAAS,GAAG,qBAAqB,CAC7C,qBAAqB,EACrB,MAAsB,CACvB,CAAC;QAEF,MAAM,EACJ,SAAS,EAAE,YAAY,EACvB,YAAY,EACZ,gBAAgB,GACjB,GAAG,mBAAmB,CACrB,MAAM,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAiC,EAClD,qBAAqB,EACrB,QAAQ,CACT,CAAC;QAEF,wBAAwB,CAAC,SAAS,GAAG,YAAY,CAAC;QAElD,IAAI,iBAAiB,EAAE;YACrB,iBAAiB,CAAC,UAAU,GAAG,oBAAoB,CAAC;gBAClD,YAAY;gBACZ,gBAAgB;gBAChB,MAAM;aACP,CAAC,CAAC;SACJ;aAAM;YACL,wBAAwB,CAAC,UAAU,GAAG,oBAAoB,CAAC;gBACzD,YAAY;gBACZ,gBAAgB;gBAChB,MAAM;aACP,CAAC,CAAC;SACJ;IACH,CAAC;CACa,CAAC;AAEjB,MAAM,eAAe,GAAG,IAAI,aAAa,CACvC,QAAQ,EACR,YAAY,CAAC,UAAU,EACvB,YAAY,CAAC,QAAQ,EACrB,iBAAiB,EACjB,YAAY,CAAC,qBAAqB,EAClC,YAAY,CAAC,OAAO,CACrB,CAAC;AAQF,MAAM,gBAAgB,GAAG,eAAe,CAAC,gBAAgB,CAAC;AAE1D,MAAM,yBAAyB,GAAG,IAAI,aAAa,CACjD,iBAAiB,EACjB,GAAG,eAAe,CAAC,YAAY,EAC/B,YAAY,CAAC,gBAAgB,EAC7B,YAAY,CAAC,SAAS,EACtB,YAAY,CAAC,aAAa,CAC3B,CAAC;AASF,MAAM,qBAAqB,GAAG,yBAAyB,CAAC,gBAAgB,CAAC;AAQzE,MAAM,UAAU,iBAAiB;IAC/B,MAAM,IAAI,KAAK,CAAC,qCAAqC,CAAC,CAAC;AACzD,CAAC;AAED,OAAO,EAAE,gBAAgB,EAAE,qBAAqB,EAAE,eAAe,EAAE,CAAC"}

package/dist/esm/tools/segmentation/strategies/utils/getStrategyData.js CHANGED Viewed

@@ -3,18 +3,22 @@ import { isVolumeSegmentation } from './stackVolumeCheck';
 const { VoxelManager } = utilities;
 function getStrategyData({ operationData, viewport }) {
     let segmentationImageData, segmentationScalarData, imageScalarData;
-    let dimensions;
-    if (isVolumeSegmentation(operationData)) {
+    let imageDimensions;
+    let segmentationDimensions;
+    if (isVolumeSegmentation(operationData, viewport)) {
         const { volumeId, referencedVolumeId } = operationData;
         const segmentationVolume = cache.getVolume(volumeId);
-        const imageVolume = cache.getVolume(referencedVolumeId);
-        if (!segmentationVolume || !imageVolume) {
+        if (!segmentationVolume) {
             return;
         }
+        if (referencedVolumeId) {
+            const imageVolume = cache.getVolume(referencedVolumeId);
+            imageScalarData = imageVolume.getScalarData();
+            imageDimensions = imageVolume.dimensions;
+        }
         ({ imageData: segmentationImageData } = segmentationVolume);
         segmentationScalarData = segmentationVolume.getScalarData();
-        imageScalarData = imageVolume.getScalarData();
-        dimensions = imageVolume.dimensions;
+        segmentationDimensions = segmentationVolume.dimensions;
     }
     else {
         const { imageIdReferenceMap, segmentationRepresentationUID } = operationData;
@@ -32,14 +36,22 @@ function getStrategyData({ operationData, viewport }) {
         segmentationScalarData = segmentationImage.getPixelData();
         const image = cache.getImage(currentImageId);
         imageScalarData = image.getPixelData();
-        dimensions = [image.columns, image.rows, 1];
+        imageDimensions = [image.columns, image.rows, 1];
+        segmentationDimensions = [
+            segmentationImage.columns,
+            segmentationImage.rows,
+            1,
+        ];
     }
+    const segmentationVoxelManager = VoxelManager.createVolumeVoxelManager(segmentationDimensions, segmentationScalarData);
+    const imageVoxelManager = imageDimensions &&
+        VoxelManager.createVolumeVoxelManager(imageDimensions, imageScalarData);
     return {
         segmentationImageData,
         segmentationScalarData,
-        segmentationVoxelManager: VoxelManager.createVolumeVoxelManager(dimensions, segmentationScalarData),
+        segmentationVoxelManager,
         imageScalarData,
-        imageVoxelManager: VoxelManager.createVolumeVoxelManager(dimensions, imageScalarData),
+        imageVoxelManager,
     };
 }
 export { getStrategyData };

package/dist/esm/tools/segmentation/strategies/utils/getStrategyData.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/esm/tools/segmentation/strategies/utils/stackVolumeCheck.js CHANGED Viewed

@@ -1,9 +1,17 @@
-function isStackSegmentation(operationData) {
-    return (operationData.imageIdReferenceMap !==
-        undefined);
+import { VolumeViewport } from '@cornerstonejs/core';
+function isVolumeSegmentation(operationData, viewport) {
+    const { imageIdReferenceMap } = operationData;
+    const { volumeId } = operationData;
+    if (volumeId && !imageIdReferenceMap) {
+        return true;
+    }
+    if (imageIdReferenceMap && !volumeId) {
+        return false;
+    }
+    if (volumeId && imageIdReferenceMap && !viewport) {
+        throw new Error('isVolumeSegmentation: viewport is required when both volumeId and imageIdReferenceMap are provided');
+    }
+    return viewport instanceof VolumeViewport;
 }
-function isVolumeSegmentation(operationData) {
-    return (operationData?.volumeId !== undefined);
-}
-export { isStackSegmentation, isVolumeSegmentation };
+export { isVolumeSegmentation };
 //# sourceMappingURL=stackVolumeCheck.js.map

package/dist/esm/tools/segmentation/strategies/utils/stackVolumeCheck.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"stackVolumeCheck.js","sourceRoot":"","sources":["../../../../../../src/tools/segmentation/strategies/utils/stackVolumeCheck.ts"],"names":[],"mappings":"~~AAWA~~,SAAS,~~mBAAmB~~,~~CAC1B~~,aAAmE;~~IAInE~~,~~OAAO~~,~~CACJ~~,aAAgD,CAAC~~,mBAAmB~~;~~QACrE~~,~~SAAS~~,~~CACV~~,CAAC;~~AACJ~~,CAAC;~~AAED~~,~~SAAS~~,~~oBAAoB~~,~~CAC3B~~,~~aAAmE~~;~~IAInE~~,OAAO,~~CACJ~~,~~aAAiD~~,~~EAAE~~,QAAQ,KAAK,~~SAAS~~,~~CAC3E~~,CAAC;~~AACJ~~,CAAC;AAED,OAAO,EAAE,~~mBAAmB,EAAE,~~oBAAoB,EAAE,CAAC"}
1	+ {"version":3,"file":"stackVolumeCheck.js","sourceRoot":"","sources":["../../../../../../src/tools/segmentation/strategies/utils/stackVolumeCheck.ts"],"names":[],"mappings":"AASA,OAAO,EAAS,cAAc,EAAE,MAAM,qBAAqB,CAAC;AAE5D,SAAS,oBAAoB,CAC3B,aAAmE,EACnE,QAA0B;IAI1B,MAAM,EAAE,mBAAmB,EAAE,GAC3B,aAA+C,CAAC;IAClD,MAAM,EAAE,QAAQ,EAAE,GAAG,aAAgD,CAAC;IAEtE,IAAI,QAAQ,IAAI,CAAC,mBAAmB,EAAE;QACpC,OAAO,IAAI,CAAC;KACb;IAED,IAAI,mBAAmB,IAAI,CAAC,QAAQ,EAAE;QACpC,OAAO,KAAK,CAAC;KACd;IAED,IAAI,QAAQ,IAAI,mBAAmB,IAAI,CAAC,QAAQ,EAAE;QAChD,MAAM,IAAI,KAAK,CACb,oGAAoG,CACrG,CAAC;KACH;IAGD,OAAO,QAAQ,YAAY,cAAc,CAAC;AAC5C,CAAC;AAED,OAAO,EAAE,oBAAoB,EAAE,CAAC"}

package/dist/esm/types/PolySeg.js ADDED Viewed

	@@ -0,0 +1,2 @@
1	+ export {};
2	+ //# sourceMappingURL=PolySeg.js.map

package/dist/esm/types/PolySeg.js.map ADDED Viewed

	@@ -0,0 +1 @@
1	+ {"version":3,"file":"PolySeg.js","sourceRoot":"","sources":["../../../src/types/PolySeg.ts"],"names":[],"mappings":""}

package/dist/esm/utilities/boundingBox/getBoundingBoxAroundShape.js CHANGED Viewed

@@ -8,7 +8,8 @@ function calculateBoundingBox(points, dimensions, isWorld = false) {
     let zMin = Infinity;
     let zMax = isWorld ? -Infinity : 0;
     const is3D = points[0]?.length === 3;
-    points.forEach((p) => {
+    for (let i = 0; i < points.length; i++) {
+        const p = points[i];
         xMin = Math.min(p[0], xMin);
         xMax = Math.max(p[0], xMax);
         yMin = Math.min(p[1], yMin);
@@ -17,7 +18,7 @@ function calculateBoundingBox(points, dimensions, isWorld = false) {
             zMin = Math.min(p[2] ?? zMin, zMin);
             zMax = Math.max(p[2] ?? zMax, zMax);
         }
-    });
+    }
     if (dimensions) {
         xMin = Math.max(isWorld ? dimensions[0] + EPSILON : 0, xMin);
         xMax = Math.min(isWorld ? dimensions[0] - EPSILON : dimensions[0] - 1, xMax);

package/dist/esm/utilities/boundingBox/getBoundingBoxAroundShape.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/esm/utilities/contourSegmentation/addContourSegmentationAnnotation.js ADDED Viewed

@@ -0,0 +1,16 @@
+import { getSegmentation } from '../../stateManagement/segmentation/segmentationState';
+export function addContourSegmentationAnnotation(annotation) {
+    if (!annotation.data.segmentation) {
+        throw new Error('addContourSegmentationAnnotation: annotation does not have a segmentation data');
+    }
+    const { segmentationId, segmentIndex } = annotation.data.segmentation;
+    const segmentation = getSegmentation(segmentationId);
+    const { annotationUIDsMap } = segmentation.representationData.CONTOUR;
+    let annotationsUIDsSet = annotationUIDsMap.get(segmentIndex);
+    if (!annotationsUIDsSet) {
+        annotationsUIDsSet = new Set();
+        annotationUIDsMap.set(segmentIndex, annotationsUIDsSet);
+    }
+    annotationsUIDsSet.add(annotation.annotationUID);
+}
+//# sourceMappingURL=addContourSegmentationAnnotation.js.map

package/dist/esm/utilities/contourSegmentation/addContourSegmentationAnnotation.js.map ADDED Viewed

@@ -0,0 +1 @@

+ {"version":3,"file":"addContourSegmentationAnnotation.js","sourceRoot":"","sources":["../../../../src/utilities/contourSegmentation/addContourSegmentationAnnotation.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,eAAe,EAAE,MAAM,sDAAsD,CAAC;AAOvF,MAAM,UAAU,gCAAgC,CAC9C,UAAyC;IAEzC,IAAI,CAAC,UAAU,CAAC,IAAI,CAAC,YAAY,EAAE;QACjC,MAAM,IAAI,KAAK,CACb,gFAAgF,CACjF,CAAC;KACH;IAED,MAAM,EAAE,cAAc,EAAE,YAAY,EAAE,GAAG,UAAU,CAAC,IAAI,CAAC,YAAY,CAAC;IACtE,MAAM,YAAY,GAAG,eAAe,CAAC,cAAc,CAAC,CAAC;IACrD,MAAM,EAAE,iBAAiB,EAAE,GAAG,YAAY,CAAC,kBAAkB,CAAC,OAAO,CAAC;IAEtE,IAAI,kBAAkB,GAAG,iBAAiB,CAAC,GAAG,CAAC,YAAY,CAAC,CAAC;IAE7D,IAAI,CAAC,kBAAkB,EAAE;QACvB,kBAAkB,GAAG,IAAI,GAAG,EAAE,CAAC;QAC/B,iBAAiB,CAAC,GAAG,CAAC,YAAY,EAAE,kBAAkB,CAAC,CAAC;KACzD;IAED,kBAAkB,CAAC,GAAG,CAAC,UAAU,CAAC,aAAa,CAAC,CAAC;AACnD,CAAC"}

package/dist/esm/utilities/contourSegmentation/areSameSegment.js CHANGED Viewed

@@ -2,8 +2,6 @@ export default function areSameSegment(firstAnnotation, secondAnnotation) {
     const { segmentation: firstSegmentation } = firstAnnotation.data;
     const { segmentation: secondSegmentation } = secondAnnotation.data;
     return (firstSegmentation.segmentationId === secondSegmentation.segmentationId &&
-        firstSegmentation.segmentationRepresentationUID ===
-            secondSegmentation.segmentationRepresentationUID &&
         firstSegmentation.segmentIndex === secondSegmentation.segmentIndex);
 }
 //# sourceMappingURL=areSameSegment.js.map

package/dist/esm/utilities/contourSegmentation/areSameSegment.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"areSameSegment.js","sourceRoot":"","sources":["../../../../src/utilities/contourSegmentation/areSameSegment.ts"],"names":[],"mappings":"AAUA,MAAM,CAAC,OAAO,UAAU,cAAc,CACpC,eAA8C,EAC9C,gBAA+C;IAE/C,MAAM,EAAE,YAAY,EAAE,iBAAiB,EAAE,GAAG,eAAe,CAAC,IAAI,CAAC;IACjE,MAAM,EAAE,YAAY,EAAE,kBAAkB,EAAE,GAAG,gBAAgB,CAAC,IAAI,CAAC;IAEnE,OAAO,CACL,iBAAiB,CAAC,cAAc,KAAK,kBAAkB,CAAC,cAAc;QACtE,iBAAiB,CAAC,YAAY,KAAK,kBAAkB,CAAC,YAAY,CACnE,CAAC;AACJ,CAAC"}

package/dist/esm/utilities/contourSegmentation/index.js CHANGED Viewed

@@ -1,3 +1,5 @@
 export { default as areSameSegment } from './areSameSegment';
 export { default as isContourSegmentationAnnotation } from './isContourSegmentationAnnotation';
+export { addContourSegmentationAnnotation } from './addContourSegmentationAnnotation';
+export { removeContourSegmentationAnnotation } from './removeContourSegmentationAnnotation';
 //# sourceMappingURL=index.js.map

package/dist/esm/utilities/contourSegmentation/index.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../../../src/utilities/contourSegmentation/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,IAAI,cAAc,EAAE,MAAM,kBAAkB,CAAC;AAC7D,OAAO,EAAE,OAAO,IAAI,+BAA+B,EAAE,MAAM,mCAAmC,CAAC;AAC/F,OAAO,EAAE,gCAAgC,EAAE,MAAM,oCAAoC,CAAC;AACtF,OAAO,EAAE,mCAAmC,EAAE,MAAM,uCAAuC,CAAC"}

package/dist/esm/utilities/contourSegmentation/removeContourSegmentationAnnotation.js ADDED Viewed

@@ -0,0 +1,15 @@
+import { state } from '../../stateManagement/segmentation';
+export function removeContourSegmentationAnnotation(annotation) {
+    if (!annotation.data.segmentation) {
+        throw new Error('removeContourSegmentationAnnotation: annotation does not have a segmentation data');
+    }
+    const { segmentationId, segmentIndex } = annotation.data.segmentation;
+    const segmentation = state.getSegmentation(segmentationId);
+    const { annotationUIDsMap } = segmentation.representationData.CONTOUR;
+    const annotationsUIDsSet = annotationUIDsMap.get(segmentIndex);
+    annotationsUIDsSet.delete(annotation.annotationUID);
+    if (!annotationsUIDsSet.size) {
+        annotationUIDsMap.delete(segmentIndex);
+    }
+}
+//# sourceMappingURL=removeContourSegmentationAnnotation.js.map

package/dist/esm/utilities/contourSegmentation/removeContourSegmentationAnnotation.js.map ADDED Viewed

@@ -0,0 +1 @@

+ {"version":3,"file":"removeContourSegmentationAnnotation.js","sourceRoot":"","sources":["../../../../src/utilities/contourSegmentation/removeContourSegmentationAnnotation.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,MAAM,oCAAoC,CAAC;AAS3D,MAAM,UAAU,mCAAmC,CACjD,UAAyC;IAEzC,IAAI,CAAC,UAAU,CAAC,IAAI,CAAC,YAAY,EAAE;QACjC,MAAM,IAAI,KAAK,CACb,mFAAmF,CACpF,CAAC;KACH;IAED,MAAM,EAAE,cAAc,EAAE,YAAY,EAAE,GAAG,UAAU,CAAC,IAAI,CAAC,YAAY,CAAC;IACtE,MAAM,YAAY,GAAG,KAAK,CAAC,eAAe,CAAC,cAAc,CAAC,CAAC;IAC3D,MAAM,EAAE,iBAAiB,EAAE,GAAG,YAAY,CAAC,kBAAkB,CAAC,OAAO,CAAC;IACtE,MAAM,kBAAkB,GAAG,iBAAiB,CAAC,GAAG,CAAC,YAAY,CAAC,CAAC;IAE/D,kBAAkB,CAAC,MAAM,CAAC,UAAU,CAAC,aAAa,CAAC,CAAC;IAGpD,IAAI,CAAC,kBAAkB,CAAC,IAAI,EAAE;QAC5B,iBAAiB,CAAC,MAAM,CAAC,YAAY,CAAC,CAAC;KACxC;AACH,CAAC"}

package/dist/esm/utilities/contours/detectContourHoles.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/esm/utilities/contours/generateContourSetsFromLabelmap.js CHANGED Viewed

@@ -2,7 +2,7 @@ import { cache as cornerstoneCache } from '@cornerstonejs/core';
 import vtkImageMarchingSquares from '@kitware/vtk.js/Filters/General/ImageMarchingSquares';
 import vtkDataArray from '@kitware/vtk.js/Common/Core/DataArray';
 import vtkImageData from '@kitware/vtk.js/Common/DataModel/ImageData';
-import { removeDuplicatePoints } from './mergePoints';
+import { getDeduplicatedVTKPolyDataPoints } from '../contours';
 import { findContoursFromReducedSet } from './contourFinder';
 import SegmentationRepresentations from '../../enums/SegmentationRepresentations';
 const { Labelmap } = SegmentationRepresentations;
@@ -71,7 +71,7 @@ function generateContourSetsFromLabelmap({ segmentations }) {
                 mSquares.setContourValues(cValues);
                 mSquares.setMergePoints(false);
                 const msOutput = mSquares.getOutputData();
-                const reducedSet = removeDuplicatePoints(msOutput);
+                const reducedSet = getDeduplicatedVTKPolyDataPoints(msOutput);
                 if (reducedSet.points?.length) {
                     const contours = findContoursFromReducedSet(reducedSet.lines);
                     sliceContours.push({

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