npm - @cornerstonejs/tools - Versions diffs - 1.51.4 → 1.52.0 - Mend

@cornerstonejs/tools 1.51.4 → 1.52.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (128) hide show

package/dist/esm/tools/annotation/SplineROITool.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/esm/utilities/contours/interpolation/acceptAutogeneratedInterpolations.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"acceptAutogeneratedInterpolations.js","sourceRoot":"","sources":["../../../../../src/utilities/contours/interpolation/acceptAutogeneratedInterpolations.ts"],"names":[],"mappings":"AAEA,OAAO,oBAAoB,MAAM,8DAA8D,CAAC;AAUhG,MAAM,CAAC,OAAO,UAAU,iCAAiC,CACvD,uBAAgD,EAChD,QAAqC;IAErC,oBAAoB,CAAC,mBAAmB,CAAC,uBAAuB,EAAE,QAAQ,CAAC,CAAC;AAC9E,CAAC"}

package/dist/esm/utilities/contours/interpolation/createPolylineToolData.js CHANGED Viewed

@@ -13,7 +13,8 @@ export default function createPolylineToolData(polyline, handlePoints, reference
     });
     Object.assign(annotation.data, {
         handles: {
-            points: handlePoints || [],
+            points: handlePoints.points || handlePoints || [],
+            interpolationSources: handlePoints.sources,
             activeHandleIndex: null,
             textBox: {
                 hasMoved: false,

package/dist/esm/utilities/contours/interpolation/createPolylineToolData.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"createPolylineToolData.js","sourceRoot":"","sources":["../../../../../src/utilities/contours/interpolation/createPolylineToolData.ts"],"names":[],"mappings":"AAAA,OAAO,EAAS,SAAS,IAAI,OAAO,EAAE,MAAM,qBAAqB,CAAC;AAclE,MAAM,CAAC,OAAO,UAAU,sBAAsB,CAC5C,QAAQ,EACR,YAAY,EACZ,kBAAkB;IAElB,MAAM,UAAU,GAA+B,OAAO,CAAC,SAAS,CAC9D;QACE,IAAI,EAAE,EAAE;QACR,QAAQ,EAAE,EAAE;KACb,EACD,kBAAkB,CACnB,CAAC;IACF,MAAM,CAAC,MAAM,CAAC,UAAU,EAAE;QACxB,WAAW,EAAE,KAAK;QAClB,WAAW,EAAE,IAAI;QACjB,aAAa,EAAE,IAAI;QACnB,aAAa,EAAE,SAAS;QACxB,WAAW,EAAE,EAAE;KAChB,CAAC,CAAC;IACH,MAAM,CAAC,MAAM,CAAC,UAAU,CAAC,IAAI,EAAE;QAC7B,OAAO,EAAE;YACP,MAAM,EAAE,YAAY,IAAI,EAAE;~~YAC1B~~,iBAAiB,EAAE,IAAI;YACvB,OAAO,EAAE;gBACP,QAAQ,EAAE,KAAK;gBACf,aAAa,EAAgB,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC;gBACtC,gBAAgB,EAAE;oBAChB,OAAO,EAAgB,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC;oBAChC,QAAQ,EAAgB,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC;oBACjC,UAAU,EAAgB,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC;oBACnC,WAAW,EAAgB,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC;iBACrC;aACF;SACF;QACD,OAAO,EAAE;YACP,QAAQ;YACR,MAAM,EAAE,IAAI;SACb;KACF,CAAC,CAAC;IAEH,OAAO,UAAU,CAAC;AACpB,CAAC"}
1	+ {"version":3,"file":"createPolylineToolData.js","sourceRoot":"","sources":["../../../../../src/utilities/contours/interpolation/createPolylineToolData.ts"],"names":[],"mappings":"AAAA,OAAO,EAAS,SAAS,IAAI,OAAO,EAAE,MAAM,qBAAqB,CAAC;AAclE,MAAM,CAAC,OAAO,UAAU,sBAAsB,CAC5C,QAAQ,EACR,YAAY,EACZ,kBAAkB;IAElB,MAAM,UAAU,GAA+B,OAAO,CAAC,SAAS,CAC9D;QACE,IAAI,EAAE,EAAE;QACR,QAAQ,EAAE,EAAE;KACb,EACD,kBAAkB,CACnB,CAAC;IACF,MAAM,CAAC,MAAM,CAAC,UAAU,EAAE;QACxB,WAAW,EAAE,KAAK;QAClB,WAAW,EAAE,IAAI;QACjB,aAAa,EAAE,IAAI;QACnB,aAAa,EAAE,SAAS;QACxB,WAAW,EAAE,EAAE;KAChB,CAAC,CAAC;IACH,MAAM,CAAC,MAAM,CAAC,UAAU,CAAC,IAAI,EAAE;QAC7B,OAAO,EAAE;YACP,MAAM,EAAE,YAAY,CAAC,MAAM,IAAI,YAAY,IAAI,EAAE;YAMjD,oBAAoB,EAAE,YAAY,CAAC,OAAO;YAC1C,iBAAiB,EAAE,IAAI;YACvB,OAAO,EAAE;gBACP,QAAQ,EAAE,KAAK;gBACf,aAAa,EAAgB,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC;gBACtC,gBAAgB,EAAE;oBAChB,OAAO,EAAgB,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC;oBAChC,QAAQ,EAAgB,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC;oBACjC,UAAU,EAAgB,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC;oBACnC,WAAW,EAAgB,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC;iBACrC;aACF;SACF;QACD,OAAO,EAAE;YACP,QAAQ;YACR,MAAM,EAAE,IAAI;SACb;KACF,CAAC,CAAC;IAEH,OAAO,UAAU,CAAC;AACpB,CAAC"}

package/dist/esm/utilities/contours/interpolation/findAnnotationForInterpolation.js CHANGED Viewed

@@ -51,7 +51,8 @@ function _getSlicePositionOfToolData(interpolationData, annotationUID) {
 }
 function _sliceNeedsInterpolating(interpolationData, sliceIndex) {
     const annotations = interpolationData.get(sliceIndex);
-    return (!annotations || (annotations.length === 1 && annotations[0].autoGenerated));
+    return (!annotations?.length ||
+        (annotations.length === 1 && annotations[0].autoGenerated));
 }
 function _appendInterpolationList(contourPair, interpolationList, itemIndex) {
     const [startIndex] = contourPair;

package/dist/esm/utilities/contours/interpolation/findAnnotationForInterpolation.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/esm/utilities/contours/interpolation/getInterpolationData.js CHANGED Viewed

@@ -20,7 +20,9 @@ export default function getInterpolationData(viewportData, filterParams = []) {
                 return value === x.value;
             });
         });
-        interpolationDatas.set(i, filteredInterpolatedAnnotations);
+        if (filteredInterpolatedAnnotations.length) {
+            interpolationDatas.set(i, filteredInterpolatedAnnotations);
+        }
     }
     return interpolationDatas;
 }

package/dist/esm/utilities/contours/interpolation/getInterpolationData.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/esm/utilities/contours/interpolation/interpolate.js CHANGED Viewed

@@ -1,10 +1,11 @@
-import { triggerEvent } from '@cornerstonejs/core';
+import { triggerEvent, utilities } from '@cornerstonejs/core';
 import { vec3 } from 'gl-matrix';
 import createPolylineToolData from './createPolylineToolData';
 import findAnnotationsForInterpolation from './findAnnotationForInterpolation';
 import EventTypes from '../../../enums/Events';
 import * as annotationState from '../../../stateManagement/annotation';
-import { PointsArray } from '../PointsArray';
+import selectHandles from './selectHandles';
+const { PointsManager } = utilities;
 const dP = 0.2;
 let interpolating = false;
 function interpolate(viewportData) {
@@ -12,12 +13,22 @@ function interpolate(viewportData) {
         return;
     }
     interpolating = true;
-    try {
-        startInterpolation(viewportData);
-    }
-    finally {
-        interpolating = false;
-    }
+    const { isInterpolationUpdate, annotation } = viewportData;
+    queueMicrotask(() => {
+        try {
+            if (isInterpolationUpdate) {
+                annotation.isInterpolationUpdate = true;
+                annotation.autoGenerated = false;
+            }
+            startInterpolation(viewportData);
+        }
+        finally {
+            interpolating = false;
+            if (isInterpolationUpdate) {
+                annotation.autoGenerated = true;
+            }
+        }
+    });
 }
 function startInterpolation(viewportData) {
     const toolData = viewportData.annotation;
@@ -47,17 +58,27 @@ function _linearlyInterpolateBetween(indices, annotationPair, interpolationData,
     const c1 = _generateClosedContour(interpolationData.get(annotationPair[0])[0].data.contour.polyline);
     const c2 = _generateClosedContour(interpolationData.get(annotationPair[1])[0].data.contour.polyline);
     const { c1Interp, c2Interp } = _generateInterpolationContourPair(c1, c2);
+    c1Interp.kIndex = annotationPair[0];
+    c2Interp.kIndex = annotationPair[1];
     indices.forEach(function (index) {
         _linearlyInterpolateContour(c1Interp, c2Interp, index, annotationPair, interpolationData, c1.x.length > c2.x.length, eventData);
     });
 }
+function getPointCount(pointArray) {
+    let sum = 0;
+    for (let i = 0; i < pointArray.I.length; i++) {
+        if (pointArray.I[i]) {
+            sum++;
+        }
+    }
+    return sum;
+}
 function _linearlyInterpolateContour(c1Interp, c2Interp, sliceIndex, annotationPair, interpolationData, c1HasMoreNodes, eventData) {
     const [startIndex, endIndex] = annotationPair;
     const zInterp = (sliceIndex - startIndex) / (endIndex - startIndex);
     const interpolated3DPoints = _generateInterpolatedOpenContour(c1Interp, c2Interp, zInterp, c1HasMoreNodes);
     const nearestAnnotation = interpolationData.get(annotationPair[zInterp > 0.5 ? 1 : 0])[0];
-    const handleCount = Math.round(Math.max(8, interpolationData.get(startIndex)[0].data.handles.points.length, interpolationData.get(endIndex)[0].data.handles.points.length, interpolated3DPoints.x.length / 50));
-    const handlePoints = _subselect(interpolated3DPoints, handleCount);
+    const handlePoints = selectHandles(interpolated3DPoints);
     if (interpolationData.has(sliceIndex)) {
         _editInterpolatedContour(interpolated3DPoints, handlePoints, sliceIndex, nearestAnnotation, eventData);
     }
@@ -65,27 +86,15 @@ function _linearlyInterpolateContour(c1Interp, c2Interp, sliceIndex, annotationP
         _addInterpolatedContour(interpolated3DPoints, handlePoints, sliceIndex, nearestAnnotation, eventData);
     }
 }
-function _subselect(points, count = 10) {
-    const handles = [];
-    const { length } = points.x;
-    if (!length) {
-        return handles;
-    }
-    for (let i = 0; i < count; i++) {
-        const handleIndex = Math.floor((length * i) / count);
-        handles.push(vec3.fromValues(points.x[handleIndex], points.y[handleIndex], points.z[handleIndex]));
-    }
-    return handles;
-}
 function _addInterpolatedContour(interpolated3DPoints, handlePoints, sliceIndex, referencedToolData, eventData) {
-    const points = PointsArray.fromXYZ(interpolated3DPoints).points;
+    const points = interpolated3DPoints.points;
     const { viewport } = eventData;
     const interpolatedAnnotation = createPolylineToolData(points, handlePoints, referencedToolData);
     const targetId = viewport.getTargetId({ sliceIndex });
     interpolatedAnnotation.metadata.referencedImageId = targetId;
     interpolatedAnnotation.metadata.referencedSliceIndex = sliceIndex;
     annotationState.state.addAnnotation(interpolatedAnnotation, viewport.element);
-    referencedToolData.postInterpolateAction?.(interpolatedAnnotation, referencedToolData);
+    referencedToolData.onInterpolationComplete?.(interpolatedAnnotation, referencedToolData);
 }
 function _editInterpolatedContour(interpolated3DPoints, handlePoints, sliceIndex, referencedToolData, eventData) {
     const { viewport } = eventData;
@@ -104,26 +113,35 @@ function _editInterpolatedContour(interpolated3DPoints, handlePoints, sliceIndex
         return;
     }
     const oldToolData = annotations[toolDataIndex];
-    const points = PointsArray.fromXYZ(interpolated3DPoints).points;
+    const points = interpolated3DPoints.points;
     const interpolatedAnnotation = createPolylineToolData(points, handlePoints, oldToolData);
     interpolatedAnnotation.annotationUID = oldToolData.annotationUID;
     annotationState.state.removeAnnotation(oldToolData.annotationUID);
     annotationState.state.addAnnotation(interpolatedAnnotation, viewport.element);
 }
 function _generateInterpolatedOpenContour(c1ir, c2ir, zInterp, c1HasMoreNodes) {
-    const cInterp = {
-        x: [],
-        y: [],
-        z: [],
-    };
     const indices = c1HasMoreNodes ? c1ir.I : c2ir.I;
+    const c1 = PointsManager.fromXYZ(c1ir);
+    const c2 = PointsManager.fromXYZ(c2ir);
+    const { length } = c1;
+    const cInterp = PointsManager.create3(length);
+    const vecSubtract = vec3.create();
+    const vecResult = vec3.create();
+    const c1Source = PointsManager.create3(length);
+    c1Source.kIndex = c1ir.kIndex;
+    const c2Source = PointsManager.create3(length);
+    c2Source.kIndex = c2ir.kIndex;
     for (let i = 0; i < c1ir.x.length; i++) {
         if (indices[i]) {
-            cInterp.x.push(c1ir.x[i] + (c2ir.x[i] - c1ir.x[i]) * zInterp);
-            cInterp.y.push(c1ir.y[i] + (c2ir.y[i] - c1ir.y[i]) * zInterp);
-            cInterp.z.push(c1ir.z[i] + (c2ir.z[i] - c1ir.z[i]) * zInterp);
+            const c1point = c1.getPoint(i);
+            const c2point = c2.getPoint(i);
+            c1Source.push(c1point);
+            c2Source.push(c2point);
+            vec3.sub(vecSubtract, c2point, c1point);
+            cInterp.push(vec3.scaleAndAdd(vecResult, c1point, vecSubtract, zInterp));
         }
     }
+    cInterp.sources = [c1Source, c2Source];
     return cInterp;
 }
 function _generateInterpolationContourPair(c1, c2) {
@@ -136,8 +154,8 @@ function _generateInterpolationContourPair(c1, c2) {
     const numNodes2 = interpNodes + c1.x.length;
     const perim1Interp = _getInterpolatedPerim(numNodes1, cumPerim1Norm);
     const perim2Interp = _getInterpolatedPerim(numNodes2, cumPerim2Norm);
-    const perim1Ind = _getIndicatorArray(c1, numNodes1);
-    const perim2Ind = _getIndicatorArray(c2, numNodes2);
+    const perim1Ind = _getIndicatorArray(numNodes1 - 2, c1.x.length);
+    const perim2Ind = _getIndicatorArray(numNodes2 - 2, c2.x.length);
     const nodesPerSegment1 = _getNodesPerSegment(perim1Interp, perim1Ind);
     const nodesPerSegment2 = _getNodesPerSegment(perim2Interp, perim2Ind);
     const c1i = _getSuperSampledContour(c1, nodesPerSegment1);
@@ -259,14 +277,10 @@ function _getNodesPerSegment(perimInterp, perimInd) {
     }
     return nodesPerSegment;
 }
-function _getIndicatorArray(contour, numNodes) {
-    const perimInd = [];
-    for (let i = 0; i < numNodes - 2; i++) {
-        perimInd.push(false);
-    }
-    for (let i = 0; i < contour.x.length; i++) {
-        perimInd.push(true);
-    }
+function _getIndicatorArray(numFalse, numTrue) {
+    const perimInd = new Array(numFalse + numTrue);
+    perimInd.fill(false, 0, numFalse);
+    perimInd.fill(true, numFalse, numFalse + numTrue);
     return perimInd;
 }
 function _getInterpolatedPerim(numNodes, cumPerimNorm) {

package/dist/esm/utilities/contours/interpolation/interpolate.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/esm/utilities/contours/interpolation/selectHandles.js ADDED Viewed

@@ -0,0 +1,164 @@
+import { vec3 } from 'gl-matrix';
+import { utilities } from '@cornerstonejs/core';
+const { PointsManager } = utilities;
+export default function selectHandles(polyline, handleCount = 8) {
+    const handles = PointsManager.create3(handleCount);
+    handles.sources = [];
+    const { sources: destPoints } = handles;
+    const { length, sources: sourcePoints = [] } = polyline;
+    const distance = 6;
+    if (length < distance * 3) {
+        console.log('Adding subselect handles', handleCount, length);
+        return polyline.subselect(handleCount);
+    }
+    const interval = Math.min(30, Math.floor(length / 3));
+    sourcePoints.forEach(() => destPoints.push(PointsManager.create3(handleCount)));
+    const dotValues = createDotValues(polyline, distance);
+    const minimumRegions = findMinimumRegions(dotValues, handleCount);
+    const indices = [];
+    if (minimumRegions?.length > 2) {
+        let lastHandle = -1;
+        const thirdInterval = interval / 3;
+        minimumRegions.forEach((region) => {
+            const [start, , end] = region;
+            const midIndex = Math.ceil((start + end) / 2);
+            if (end - lastHandle < thirdInterval) {
+                return;
+            }
+            if (midIndex - start > 2 * thirdInterval) {
+                addInterval(indices, lastHandle, start, interval, length);
+                lastHandle = addInterval(indices, start, midIndex, interval, length);
+            }
+            else {
+                lastHandle = addInterval(indices, lastHandle, midIndex, interval, length);
+            }
+            if (end - lastHandle > thirdInterval) {
+                lastHandle = addInterval(indices, lastHandle, end, interval, length);
+            }
+        });
+        const firstHandle = indices[0];
+        const lastDistance = indexValue(firstHandle + length - lastHandle, length);
+        if (lastDistance > 2 * thirdInterval) {
+            addInterval(indices, lastHandle, firstHandle - thirdInterval, interval, length);
+        }
+    }
+    else {
+        const interval = Math.floor(length / handleCount);
+        addInterval(indices, -1, length - interval, interval, length);
+    }
+    indices.forEach((index) => {
+        const point = polyline.getPointArray(index);
+        handles.push(point);
+        sourcePoints.forEach((source, destSourceIndex) => destPoints[destSourceIndex].push(source.getPoint(index)));
+    });
+    return handles;
+}
+export function createDotValues(polyline, distance = 6) {
+    const { length } = polyline;
+    const prevVec3 = vec3.create();
+    const nextVec3 = vec3.create();
+    const dotValues = new Float32Array(length);
+    for (let i = 0; i < length; i++) {
+        const point = polyline.getPoint(i);
+        const prevPoint = polyline.getPoint(i - distance);
+        const nextPoint = polyline.getPoint((i + distance) % length);
+        vec3.sub(prevVec3, point, prevPoint);
+        vec3.sub(nextVec3, nextPoint, point);
+        const dot = vec3.dot(prevVec3, nextVec3) / (vec3.len(prevVec3) * vec3.len(nextVec3));
+        dotValues[i] = dot;
+    }
+    return dotValues;
+}
+function findMinimumRegions(dotValues, handleCount) {
+    const { max, deviation } = getStats(dotValues);
+    const { length } = dotValues;
+    if (deviation < 0.01 || length < handleCount * 3) {
+        return [0, Math.floor(length / 3), Math.floor((length * 2) / 3)];
+    }
+    const inflection = [];
+    let pair = null;
+    let minValue;
+    let minIndex = 0;
+    for (let i = 0; i < length; i++) {
+        const dot = dotValues[i];
+        if (dot < max - deviation) {
+            if (pair) {
+                pair[2] = i;
+                if (dot < minValue) {
+                    minValue = dot;
+                    minIndex = i;
+                }
+                pair[1] = minIndex;
+            }
+            else {
+                minValue = dot;
+                minIndex = i;
+                pair = [i, i, i];
+            }
+        }
+        else {
+            if (pair) {
+                inflection.push(pair);
+                pair = null;
+            }
+        }
+    }
+    if (pair) {
+        if (inflection[0][0] === 0) {
+            inflection[0][0] = pair[0];
+        }
+        else {
+            pair[1] = minIndex;
+            pair[2] = length - 1;
+            inflection.push(pair);
+        }
+    }
+    return inflection;
+}
+export function addInterval(indices, start, finish, interval, length) {
+    if (finish < start) {
+        finish += length;
+    }
+    const distance = finish - start;
+    const count = Math.ceil(distance / interval);
+    if (count <= 0) {
+        if (indices[indices.length - 1] !== finish) {
+            indices.push(indexValue(finish, length));
+        }
+        return finish;
+    }
+    for (let i = 1; i <= count; i++) {
+        const index = indexValue(start + (i * distance) / count, length);
+        indices.push(index);
+    }
+    return indices[indices.length - 1];
+}
+function indexValue(v, length) {
+    return (Math.round(v) + length) % length;
+}
+function getStats(dotValues) {
+    const { length } = dotValues;
+    let sum = 0;
+    let min = Infinity;
+    let max = -Infinity;
+    let sumSq = 0;
+    for (let i = 0; i < length; i++) {
+        const dot = dotValues[i];
+        sum += dot;
+        min = Math.min(min, dot);
+        max = Math.max(max, dot);
+    }
+    const mean = sum / length;
+    for (let i = 0; i < length; i++) {
+        const valueDiff = dotValues[i] - mean;
+        sumSq += valueDiff * valueDiff;
+    }
+    return {
+        mean,
+        max,
+        min,
+        sumSq,
+        deviation: Math.sqrt(sumSq / length),
+    };
+}
+//# sourceMappingURL=selectHandles.js.map

package/dist/esm/utilities/contours/interpolation/selectHandles.js.map ADDED Viewed

@@ -0,0 +1 @@

+ 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