npm - @cornerstonejs/tools - Versions diffs - 1.48.1 → 1.49.0 - Mend

@cornerstonejs/tools 1.48.1 → 1.49.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (333) hide show

package/dist/esm/tools/annotation/planarFreehandROITool/drawLoop.js CHANGED Viewed

@@ -3,11 +3,12 @@ import { resetElementCursor, hideElementCursor, } from '../../../cursors/element
 import { Events } from '../../../enums';
 import { state } from '../../../store';
 import { vec3 } from 'gl-matrix';
-import { shouldInterpolate, getInterpolatedPoints, } from '../../../utilities/planarFreehandROITool/interpolatePoints';
+import { shouldSmooth, getInterpolatedPoints, } from '../../../utilities/planarFreehandROITool/smoothPoints';
 import triggerAnnotationRenderForViewportIds from '../../../utilities/triggerAnnotationRenderForViewportIds';
 import findOpenUShapedContourVectorToPeak from './findOpenUShapedContourVectorToPeak';
 import { polyline } from '../../../utilities/math';
 import { removeAnnotation } from '../../../stateManagement/annotation/annotationState';
+import reverseIfAntiClockwise from '../../../utilities/contours/reverseIfAntiClockwise';
 const { addCanvasPointsToArray, pointsAreWithinCloseContourProximity, getFirstIntersectionWithPolyline, getSubPixelSpacingAndXYDirections, } = polyline;
 function activateDraw(evt, annotation, viewportIdsToRender) {
     this.isDrawing = true;
@@ -115,9 +116,12 @@ function completeDrawClosedContour(element) {
     const { viewport, renderingEngine } = enabledElement;
     addCanvasPointsToArray(element, canvasPoints, canvasPoints[0], this.commonData);
     canvasPoints.pop();
-    const updatedPoints = shouldInterpolate(this.configuration)
-        ? getInterpolatedPoints(this.configuration, canvasPoints)
+    const clockwise = this.configuration.makeClockWise
+        ? reverseIfAntiClockwise(canvasPoints)
         : canvasPoints;
+    const updatedPoints = shouldSmooth(this.configuration, annotation)
+        ? getInterpolatedPoints(this.configuration, clockwise)
+        : clockwise;
     const worldPoints = updatedPoints.map((canvasPoint) => viewport.canvasToWorld(canvasPoint));
     annotation.data.contour.polyline = worldPoints;
     annotation.data.contour.closed = true;
@@ -151,7 +155,7 @@ function completeDrawOpenContour(element) {
     const { annotation, viewportIdsToRender } = this.commonData;
     const enabledElement = getEnabledElement(element);
     const { viewport, renderingEngine } = enabledElement;
-    const updatedPoints = shouldInterpolate(this.configuration)
+    const updatedPoints = shouldSmooth(this.configuration, annotation)
         ? getInterpolatedPoints(this.configuration, canvasPoints)
         : canvasPoints;
     const worldPoints = updatedPoints.map((canvasPoint) => viewport.canvasToWorld(canvasPoint));

package/dist/esm/tools/annotation/planarFreehandROITool/drawLoop.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/esm/tools/annotation/planarFreehandROITool/openContourEditLoop.js CHANGED Viewed

@@ -4,7 +4,7 @@ import { Events } from '../../../enums';
 import { resetElementCursor, hideElementCursor, } from '../../../cursors/elementCursor';
 import { vec3, vec2 } from 'gl-matrix';
 import { polyline } from '../../../utilities/math';
-import { shouldInterpolate, getInterpolatedPoints, } from '../../../utilities/planarFreehandROITool/interpolatePoints';
+import { shouldSmooth, getInterpolatedPoints, } from '../../../utilities/planarFreehandROITool/smoothPoints';
 import triggerAnnotationRenderForViewportIds from '../../../utilities/triggerAnnotationRenderForViewportIds';
 import findOpenUShapedContourVectorToPeak from './findOpenUShapedContourVectorToPeak';
 const { addCanvasPointsToArray, getSubPixelSpacingAndXYDirections } = polyline;
@@ -260,7 +260,7 @@ function completeOpenContourEdit(element) {
     const { annotation, viewportIdsToRender } = this.commonData;
     const { fusedCanvasPoints, prevCanvasPoints } = this.editData;
     if (fusedCanvasPoints) {
-        const updatedPoints = shouldInterpolate(this.configuration)
+        const updatedPoints = shouldSmooth(this.configuration)
             ? getInterpolatedPoints(this.configuration, fusedCanvasPoints, prevCanvasPoints)
             : fusedCanvasPoints;
         const worldPoints = updatedPoints.map((canvasPoint) => viewport.canvasToWorld(canvasPoint));

package/dist/esm/tools/annotation/planarFreehandROITool/openContourEditLoop.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/esm/tools/base/ContourBaseTool.js CHANGED Viewed

@@ -59,6 +59,7 @@ class ContourBaseTool extends AnnotationTool {
         const camera = viewport.getCamera();
         const { viewPlaneNormal, viewUp } = camera;
         const referencedImageId = this.getReferencedImageId(viewport, worldPos, viewPlaneNormal, viewUp);
+        const referencedSliceIndex = viewport.getCurrentImageIdIndex();
         const FrameOfReferenceUID = viewport.getFrameOfReferenceUID();
         return {
             highlighted: true,
@@ -69,6 +70,7 @@ class ContourBaseTool extends AnnotationTool {
                 viewUp: [...viewUp],
                 FrameOfReferenceUID,
                 referencedImageId,
+                referencedSliceIndex,
             },
             data: {
                 handles: {
@@ -90,6 +92,8 @@ class ContourBaseTool extends AnnotationTool {
                     closed: false,
                 },
             },
+            interpolationUID: '',
+            autoGenerated: false,
         };
     }
     addAnnotation(annotation, element) {

package/dist/esm/tools/base/ContourBaseTool.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/esm/tools/base/ContourSegmentationBaseTool.js CHANGED Viewed

@@ -2,9 +2,13 @@ import { utilities } from '@cornerstonejs/core';
 import { config as segmentationConfig, state as segmentationState, segmentLocking, segmentIndex as segmentIndexController, activeSegmentation, } from '../../stateManagement/segmentation';
 import { SegmentationRepresentations } from '../../enums';
 import ContourBaseTool from './ContourBaseTool';
+import { InterpolationManager } from '../../utilities/contours/interpolation';
 class ContourSegmentationBaseTool extends ContourBaseTool {
     constructor(toolProps, defaultToolProps) {
         super(toolProps, defaultToolProps);
+        if (this.configuration.interpolation?.enabled) {
+            InterpolationManager.addTool(this.getToolName());
+        }
     }
     isContourSegmentationTool() {
         return true;
@@ -62,6 +66,7 @@ class ContourSegmentationBaseTool extends ContourBaseTool {
         const { segmentationRepresentationUID, segmentationId, segmentIndex } = annotation.data.segmentation;
         const segmentationRepresentation = segmentationState.getSegmentationRepresentationByUID(toolGroupId, segmentationRepresentationUID);
         const { active } = segmentationRepresentation;
+        const { autoGenerated } = annotation;
         const segmentsLocked = segmentLocking.getLockedSegments(segmentationId);
         const annotationLocked = segmentsLocked.includes(segmentIndex);
         const segmentColor = segmentationConfig.color.getColorForSegmentIndex(toolGroupId, segmentationRepresentationUID, segmentIndex);
@@ -76,7 +81,13 @@ class ContourSegmentationBaseTool extends ContourBaseTool {
         let lineDash = undefined;
         let lineOpacity = 1;
         let fillOpacity = 0;
-        if (active) {
+        if (autoGenerated) {
+            lineWidth = mergedConfig.outlineWidthAutoGenerated ?? lineWidth;
+            lineDash = mergedConfig.outlineDashAutoGenerated ?? lineDash;
+            lineOpacity = mergedConfig.outlineOpacity ?? lineOpacity;
+            fillOpacity = mergedConfig.fillAlphaAutoGenerated ?? fillOpacity;
+        }
+        else if (active) {
             lineWidth = mergedConfig.outlineWidthActive ?? lineWidth;
             lineDash = mergedConfig.outlineDashActive ?? lineDash;
             lineOpacity = mergedConfig.outlineOpacity ?? lineOpacity;

package/dist/esm/tools/base/ContourSegmentationBaseTool.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ 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package/dist/esm/tools/displayTools/Contour/contourConfig.js CHANGED Viewed

@@ -1,12 +1,17 @@
 const defaultContourConfig = {
     renderOutline: true,
+    outlineWidthAutoGenerated: 3,
     outlineWidthActive: 2,
-    outlineWidthInactive: 2,
+    outlineWidthInactive: 1,
     outlineOpacity: 1,
     outlineOpacityInactive: 0.85,
+    outlineDashActive: undefined,
+    outlineDashInactive: undefined,
+    outlineDashAutoGenerated: '5,3',
     renderFill: true,
-    fillAlpha: 1,
-    fillAlphaInactive: 0,
+    fillAlpha: 0.5,
+    fillAlphaInactive: 0.3,
+    fillAlphaAutoGenerated: 0.3,
 };
 function getDefaultContourConfig() {
     return defaultContourConfig;

package/dist/esm/tools/displayTools/Contour/contourConfig.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"contourConfig.js","sourceRoot":"","sources":["../../../../../src/tools/displayTools/Contour/contourConfig.ts"],"names":[],"mappings":"AAEA,MAAM,oBAAoB,GAAkB;IAC1C,aAAa,EAAE,IAAI;IACnB,kBAAkB,EAAE,CAAC;IACrB,oBAAoB,EAAE,CAAC;IACvB,cAAc,EAAE,CAAC;IACjB,sBAAsB,EAAE,IAAI;IAC5B,UAAU,EAAE,IAAI;IAChB,SAAS,EAAE,~~CAAC~~;~~IACZ~~,iBAAiB,EAAE,~~CAAC~~;~~CACrB~~,CAAC;AAEF,SAAS,uBAAuB;IAC9B,OAAO,oBAAoB,CAAC;AAC9B,CAAC;AAED,eAAe,uBAAuB,CAAC"}
1	+ {"version":3,"file":"contourConfig.js","sourceRoot":"","sources":["../../../../../src/tools/displayTools/Contour/contourConfig.ts"],"names":[],"mappings":"AAEA,MAAM,oBAAoB,GAAkB;IAC1C,aAAa,EAAE,IAAI;IACnB,yBAAyB,EAAE,CAAC;IAC5B,kBAAkB,EAAE,CAAC;IACrB,oBAAoB,EAAE,CAAC;IACvB,cAAc,EAAE,CAAC;IACjB,sBAAsB,EAAE,IAAI;IAC5B,iBAAiB,EAAE,SAAS;IAC5B,mBAAmB,EAAE,SAAS;IAC9B,wBAAwB,EAAE,KAAK;IAC/B,UAAU,EAAE,IAAI;IAChB,SAAS,EAAE,GAAG;IACd,iBAAiB,EAAE,GAAG;IACtB,sBAAsB,EAAE,GAAG;CAC5B,CAAC;AAEF,SAAS,uBAAuB;IAC9B,OAAO,oBAAoB,CAAC;AAC9B,CAAC;AAED,eAAe,uBAAuB,CAAC"}

package/dist/esm/tools/displayTools/Contour/contourDisplay.js CHANGED Viewed

@@ -26,7 +26,6 @@ async function render(viewport, representationConfig, toolGroupConfig) {
         return;
     }
     if (!geometryIds?.length) {
-        console.warn(`No contours found for segmentationId ${segmentationId}. Skipping render.`);
         return;
     }
     addOrUpdateContourSets(viewport, geometryIds, representationConfig, toolGroupConfig);

package/dist/esm/tools/displayTools/Contour/contourDisplay.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/esm/types/InterpolationTypes.js ADDED Viewed

	@@ -0,0 +1,2 @@
1	+ export {};
2	+ //# sourceMappingURL=InterpolationTypes.js.map

package/dist/esm/types/InterpolationTypes.js.map ADDED Viewed

	@@ -0,0 +1 @@
1	+ {"version":3,"file":"InterpolationTypes.js","sourceRoot":"","sources":["../../../src/types/InterpolationTypes.ts"],"names":[],"mappings":""}

package/dist/esm/utilities/contours/PointsArray.js ADDED Viewed

@@ -0,0 +1,98 @@
+import { vec2, vec3 } from 'gl-matrix';
+export class PointsArray {
+    constructor(configuration = {}) {
+        this.dimensions = 3;
+        this.length = 0;
+        const { initialSize = 1024, dimensions = 3 } = configuration;
+        this.data = new Float32Array(initialSize * dimensions);
+        this.dimensions = dimensions;
+    }
+    forEach(func, point) {
+        for (let i = 0; i < this.length; i++) {
+            func(this.getPoint(i, point), i);
+        }
+    }
+    reverse() {
+        const midLength = Math.floor(this.length / 2);
+        for (let i = 0; i < midLength; i++) {
+            const indexStart = i * this.dimensions;
+            const indexEnd = (this.length - 1 - i) * this.dimensions;
+            for (let dimension = 0; dimension < this.dimensions; dimension++) {
+                const valueStart = this.data[indexStart + dimension];
+                this.data[indexStart + dimension] = this.data[indexEnd + dimension];
+                this.data[indexEnd + dimension] = valueStart;
+            }
+        }
+    }
+    map(f, factory) {
+        const mapData = [];
+        for (let i = 0; i < this.length; i++) {
+            mapData.push(f(this.getPoint(i, factory(i)), i));
+        }
+        return mapData;
+    }
+    static fromXYZ({ x, y, z }) {
+        const array = new PointsArray3({ initialSize: x.length });
+        let offset = 0;
+        for (let i = 0; i < x.length; i++) {
+            array.data[offset++] = x[i];
+            array.data[offset++] = y[i];
+            array.data[offset++] = z[i];
+        }
+        array.length = x.length;
+        return array;
+    }
+}
+export class PointsArray2 extends PointsArray {
+    constructor(configuration = {}) {
+        super({ ...configuration, dimensions: 2 });
+    }
+    forEach(func, point = vec2.create()) {
+        super.forEach(func, point);
+    }
+    getPoint(index, point = vec2.create()) {
+        if (index >= this.length) {
+            return;
+        }
+        const index2 = index * 2;
+        point[0] = this.data[index2];
+        point[1] = this.data[index2 + 1];
+        return point;
+    }
+    get points() {
+        return this.map((point) => point, () => vec2.create());
+    }
+}
+export class PointsArray3 extends PointsArray {
+    constructor(configuration = {}) {
+        super({ ...configuration, dimensions: 3 });
+    }
+    forEach(func, point = vec3.create()) {
+        super.forEach(func, point);
+    }
+    getPoint(index, point = vec3.create()) {
+        if (index >= this.length) {
+            return;
+        }
+        const index2 = index * 3;
+        point[0] = this.data[index2];
+        point[1] = this.data[index2 + 1];
+        point[2] = this.data[index2 + 2];
+        return point;
+    }
+    get points() {
+        return this.map((point) => point, () => vec3.create());
+    }
+    getXYZ() {
+        const x = [];
+        const y = [];
+        const z = [];
+        this.forEach((point) => {
+            x.push(point[0]);
+            y.push(point[1]);
+            z.push(point[2]);
+        });
+        return { x, y, z };
+    }
+}
+//# sourceMappingURL=PointsArray.js.map

package/dist/esm/utilities/contours/PointsArray.js.map ADDED Viewed

@@ -0,0 +1 @@

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package/dist/esm/utilities/contours/index.js CHANGED Viewed

@@ -3,5 +3,7 @@ import mergePoints from './mergePoints';
 import detectContourHoles from './detectContourHoles';
 import { generateContourSetsFromLabelmap } from './generateContourSetsFromLabelmap';
 import AnnotationToPointData from './AnnotationToPointData';
-export { contourFinder, mergePoints, detectContourHoles, generateContourSetsFromLabelmap, AnnotationToPointData, };
+import acceptAutogeneratedInterpolations from './interpolation/acceptAutogeneratedInterpolations';
+import * as interpolation from './interpolation';
+export { contourFinder, mergePoints, detectContourHoles, generateContourSetsFromLabelmap, AnnotationToPointData, interpolation, acceptAutogeneratedInterpolations, };
 //# sourceMappingURL=index.js.map

package/dist/esm/utilities/contours/index.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../../../src/utilities/contours/index.ts"],"names":[],"mappings":"AAAA,OAAO,aAAa,MAAM,iBAAiB,CAAC;AAC5C,OAAO,WAAW,MAAM,eAAe,CAAC;AACxC,OAAO,kBAAkB,MAAM,sBAAsB,CAAC;AACtD,OAAO,EAAE,+BAA+B,EAAE,MAAM,mCAAmC,CAAC;AACpF,OAAO,qBAAqB,MAAM,yBAAyB,CAAC;AAC5D,OAAO,iCAAiC,MAAM,mDAAmD,CAAC;AAClG,OAAO,KAAK,aAAa,MAAM,iBAAiB,CAAC;AAEjD,OAAO,EACL,aAAa,EACb,WAAW,EACX,kBAAkB,EAClB,+BAA+B,EAC/B,qBAAqB,EACrB,aAAa,EACb,iCAAiC,GAClC,CAAC"}

package/dist/esm/utilities/contours/interpolation/acceptAutogeneratedInterpolations.js ADDED Viewed

@@ -0,0 +1,5 @@
+import InterpolationManager from '../../segmentation/InterpolationManager/InterpolationManager';
+export default function acceptAutogeneratedInterpolations(annotationGroupSelector, selector) {
+    InterpolationManager.acceptAutoGenerated(annotationGroupSelector, selector);
+}
+//# sourceMappingURL=acceptAutogeneratedInterpolations.js.map

package/dist/esm/utilities/contours/interpolation/acceptAutogeneratedInterpolations.js.map ADDED Viewed

	@@ -0,0 +1 @@
1	+ {"version":3,"file":"acceptAutogeneratedInterpolations.js","sourceRoot":"","sources":["../../../../../src/utilities/contours/interpolation/acceptAutogeneratedInterpolations.ts"],"names":[],"mappings":"AAAA,OAAO,oBAAoB,MAAM,8DAA8D,CAAC;AAUhG,MAAM,CAAC,OAAO,UAAU,iCAAiC,CACvD,uBAAgD,EAChD,QAAqC;IAErC,oBAAoB,CAAC,mBAAmB,CAAC,uBAAuB,EAAE,QAAQ,CAAC,CAAC;AAC9E,CAAC"}

package/dist/esm/utilities/contours/interpolation/createPolylineToolData.js ADDED Viewed

@@ -0,0 +1,36 @@
+import { utilities as csUtils } from '@cornerstonejs/core';
+export default function createPolylineToolData(polyline, handlePoints, referencedToolData) {
+    const annotation = csUtils.deepMerge({
+        data: {},
+        metadata: {},
+    }, referencedToolData);
+    Object.assign(annotation, {
+        highlighted: false,
+        invalidated: true,
+        autoGenerated: true,
+        annotationUID: undefined,
+        cachedStats: {},
+    });
+    Object.assign(annotation.data, {
+        handles: {
+            points: handlePoints || [],
+            activeHandleIndex: null,
+            textBox: {
+                hasMoved: false,
+                worldPosition: [0, 0, 0],
+                worldBoundingBox: {
+                    topLeft: [0, 0, 0],
+                    topRight: [0, 0, 0],
+                    bottomLeft: [0, 0, 0],
+                    bottomRight: [0, 0, 0],
+                },
+            },
+        },
+        contour: {
+            polyline,
+            closed: true,
+        },
+    });
+    return annotation;
+}
+//# sourceMappingURL=createPolylineToolData.js.map

package/dist/esm/utilities/contours/interpolation/createPolylineToolData.js.map ADDED Viewed

@@ -0,0 +1 @@

+ {"version":3,"file":"createPolylineToolData.js","sourceRoot":"","sources":["../../../../../src/utilities/contours/interpolation/createPolylineToolData.ts"],"names":[],"mappings":"AAAA,OAAO,EAAS,SAAS,IAAI,OAAO,EAAE,MAAM,qBAAqB,CAAC;AAclE,MAAM,CAAC,OAAO,UAAU,sBAAsB,CAC5C,QAAQ,EACR,YAAY,EACZ,kBAAkB;IAElB,MAAM,UAAU,GAA+B,OAAO,CAAC,SAAS,CAC9D;QACE,IAAI,EAAE,EAAE;QACR,QAAQ,EAAE,EAAE;KACb,EACD,kBAAkB,CACnB,CAAC;IACF,MAAM,CAAC,MAAM,CAAC,UAAU,EAAE;QACxB,WAAW,EAAE,KAAK;QAClB,WAAW,EAAE,IAAI;QACjB,aAAa,EAAE,IAAI;QACnB,aAAa,EAAE,SAAS;QACxB,WAAW,EAAE,EAAE;KAChB,CAAC,CAAC;IACH,MAAM,CAAC,MAAM,CAAC,UAAU,CAAC,IAAI,EAAE;QAC7B,OAAO,EAAE;YACP,MAAM,EAAE,YAAY,IAAI,EAAE;YAC1B,iBAAiB,EAAE,IAAI;YACvB,OAAO,EAAE;gBACP,QAAQ,EAAE,KAAK;gBACf,aAAa,EAAgB,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC;gBACtC,gBAAgB,EAAE;oBAChB,OAAO,EAAgB,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC;oBAChC,QAAQ,EAAgB,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC;oBACjC,UAAU,EAAgB,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC;oBACnC,WAAW,EAAgB,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC;iBACrC;aACF;SACF;QACD,OAAO,EAAE;YACP,QAAQ;YACR,MAAM,EAAE,IAAI;SACb;KACF,CAAC,CAAC;IAEH,OAAO,UAAU,CAAC;AACpB,CAAC"}