@cornerstonejs/tools 1.40.3 → 1.42.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/cjs/drawingSvg/drawHandle.d.ts +4 -0
- package/dist/cjs/drawingSvg/drawHandle.js +66 -0
- package/dist/cjs/drawingSvg/drawHandle.js.map +1 -0
- package/dist/cjs/drawingSvg/drawHandles.js +4 -60
- package/dist/cjs/drawingSvg/drawHandles.js.map +1 -1
- package/dist/cjs/drawingSvg/index.d.ts +2 -1
- package/dist/cjs/drawingSvg/index.js +3 -1
- package/dist/cjs/drawingSvg/index.js.map +1 -1
- package/dist/cjs/eventDispatchers/keyboardEventHandlers/keyDown.js +2 -1
- package/dist/cjs/eventDispatchers/keyboardEventHandlers/keyDown.js.map +1 -1
- package/dist/cjs/index.d.ts +2 -2
- package/dist/cjs/index.js +3 -2
- package/dist/cjs/index.js.map +1 -1
- package/dist/cjs/stateManagement/annotation/annotationState.js +3 -0
- package/dist/cjs/stateManagement/annotation/annotationState.js.map +1 -1
- package/dist/cjs/tools/annotation/AngleTool.js.map +1 -1
- package/dist/cjs/tools/annotation/BidirectionalTool.js +7 -6
- package/dist/cjs/tools/annotation/BidirectionalTool.js.map +1 -1
- package/dist/cjs/tools/annotation/LengthTool.js +4 -3
- package/dist/cjs/tools/annotation/LengthTool.js.map +1 -1
- package/dist/cjs/tools/annotation/ProbeTool.js +24 -3
- package/dist/cjs/tools/annotation/ProbeTool.js.map +1 -1
- package/dist/cjs/tools/annotation/UltrasoundDirectionalTool.d.ts +36 -0
- package/dist/cjs/tools/annotation/UltrasoundDirectionalTool.js +483 -0
- package/dist/cjs/tools/annotation/UltrasoundDirectionalTool.js.map +1 -0
- package/dist/cjs/tools/index.d.ts +2 -1
- package/dist/cjs/tools/index.js +3 -1
- package/dist/cjs/tools/index.js.map +1 -1
- package/dist/cjs/types/ToolSpecificAnnotationTypes.d.ts +28 -0
- package/dist/cjs/types/index.d.ts +2 -1
- package/dist/cjs/utilities/contours/AnnotationToPointData.d.ts +11 -0
- package/dist/cjs/utilities/contours/AnnotationToPointData.js +44 -0
- package/dist/cjs/utilities/contours/AnnotationToPointData.js.map +1 -0
- package/dist/cjs/utilities/contours/RectangleROIStartEndThreshold.d.ts +6 -0
- package/dist/cjs/utilities/contours/RectangleROIStartEndThreshold.js +43 -0
- package/dist/cjs/utilities/contours/RectangleROIStartEndThreshold.js.map +1 -0
- package/dist/cjs/utilities/contours/contourFinder.d.ts +7 -0
- package/dist/cjs/utilities/contours/contourFinder.js +68 -0
- package/dist/cjs/utilities/contours/contourFinder.js.map +1 -0
- package/dist/cjs/utilities/contours/detectContourHoles.d.ts +5 -0
- package/dist/cjs/utilities/contours/detectContourHoles.js +78 -0
- package/dist/cjs/utilities/contours/detectContourHoles.js.map +1 -0
- package/dist/cjs/utilities/contours/generateContourSetsFromLabelmap.d.ts +4 -0
- package/dist/cjs/utilities/contours/generateContourSetsFromLabelmap.js +124 -0
- package/dist/cjs/utilities/contours/generateContourSetsFromLabelmap.js.map +1 -0
- package/dist/cjs/utilities/contours/index.d.ts +6 -0
- package/dist/cjs/utilities/contours/index.js +17 -0
- package/dist/cjs/utilities/contours/index.js.map +1 -0
- package/dist/cjs/utilities/contours/mergePoints.d.ts +8 -0
- package/dist/cjs/utilities/contours/mergePoints.js +77 -0
- package/dist/cjs/utilities/contours/mergePoints.js.map +1 -0
- package/dist/cjs/utilities/getCalibratedUnits.d.ts +16 -2
- package/dist/cjs/utilities/getCalibratedUnits.js +127 -5
- package/dist/cjs/utilities/getCalibratedUnits.js.map +1 -1
- package/dist/cjs/utilities/index.d.ts +2 -1
- package/dist/cjs/utilities/index.js +3 -1
- package/dist/cjs/utilities/index.js.map +1 -1
- package/dist/cjs/utilities/segmentation/contourAndFindLargestBidirectional.d.ts +1 -0
- package/dist/cjs/utilities/segmentation/contourAndFindLargestBidirectional.js +31 -0
- package/dist/cjs/utilities/segmentation/contourAndFindLargestBidirectional.js.map +1 -0
- package/dist/cjs/utilities/segmentation/createBidirectionalToolData.d.ts +14 -0
- package/dist/cjs/utilities/segmentation/createBidirectionalToolData.js +43 -0
- package/dist/cjs/utilities/segmentation/createBidirectionalToolData.js.map +1 -0
- package/dist/cjs/utilities/segmentation/findLargestBidirectional.d.ts +1 -0
- package/dist/cjs/utilities/segmentation/findLargestBidirectional.js +94 -0
- package/dist/cjs/utilities/segmentation/findLargestBidirectional.js.map +1 -0
- package/dist/cjs/utilities/segmentation/index.d.ts +4 -1
- package/dist/cjs/utilities/segmentation/index.js +7 -1
- package/dist/cjs/utilities/segmentation/index.js.map +1 -1
- package/dist/cjs/utilities/segmentation/isLineInSegment.d.ts +9 -0
- package/dist/cjs/utilities/segmentation/isLineInSegment.js +55 -0
- package/dist/cjs/utilities/segmentation/isLineInSegment.js.map +1 -0
- package/dist/cjs/utilities/segmentation/segmentContourAction.d.ts +17 -0
- package/dist/cjs/utilities/segmentation/segmentContourAction.js +122 -0
- package/dist/cjs/utilities/segmentation/segmentContourAction.js.map +1 -0
- package/dist/esm/drawingSvg/drawHandle.js +61 -0
- package/dist/esm/drawingSvg/drawHandle.js.map +1 -0
- package/dist/esm/drawingSvg/drawHandles.js +4 -60
- package/dist/esm/drawingSvg/drawHandles.js.map +1 -1
- package/dist/esm/drawingSvg/index.js +2 -1
- package/dist/esm/drawingSvg/index.js.map +1 -1
- package/dist/esm/eventDispatchers/keyboardEventHandlers/keyDown.js +2 -1
- package/dist/esm/eventDispatchers/keyboardEventHandlers/keyDown.js.map +1 -1
- package/dist/esm/index.js +2 -2
- package/dist/esm/index.js.map +1 -1
- package/dist/esm/stateManagement/annotation/annotationState.js +3 -0
- package/dist/esm/stateManagement/annotation/annotationState.js.map +1 -1
- package/dist/esm/tools/annotation/AngleTool.js.map +1 -1
- package/dist/esm/tools/annotation/BidirectionalTool.js +7 -6
- package/dist/esm/tools/annotation/BidirectionalTool.js.map +1 -1
- package/dist/esm/tools/annotation/LengthTool.js +5 -4
- package/dist/esm/tools/annotation/LengthTool.js.map +1 -1
- package/dist/esm/tools/annotation/ProbeTool.js +24 -3
- package/dist/esm/tools/annotation/ProbeTool.js.map +1 -1
- package/dist/esm/tools/annotation/UltrasoundDirectionalTool.js +478 -0
- package/dist/esm/tools/annotation/UltrasoundDirectionalTool.js.map +1 -0
- package/dist/esm/tools/index.js +2 -1
- package/dist/esm/tools/index.js.map +1 -1
- package/dist/esm/utilities/contours/AnnotationToPointData.js +39 -0
- package/dist/esm/utilities/contours/AnnotationToPointData.js.map +1 -0
- package/dist/esm/utilities/contours/RectangleROIStartEndThreshold.js +41 -0
- package/dist/esm/utilities/contours/RectangleROIStartEndThreshold.js.map +1 -0
- package/dist/esm/utilities/contours/contourFinder.js +63 -0
- package/dist/esm/utilities/contours/contourFinder.js.map +1 -0
- package/dist/esm/utilities/contours/detectContourHoles.js +74 -0
- package/dist/esm/utilities/contours/detectContourHoles.js.map +1 -0
- package/dist/esm/utilities/contours/generateContourSetsFromLabelmap.js +117 -0
- package/dist/esm/utilities/contours/generateContourSetsFromLabelmap.js.map +1 -0
- package/dist/esm/utilities/contours/index.js +7 -0
- package/dist/esm/utilities/contours/index.js.map +1 -0
- package/dist/esm/utilities/contours/mergePoints.js +73 -0
- package/dist/esm/utilities/contours/mergePoints.js.map +1 -0
- package/dist/esm/utilities/getCalibratedUnits.js +125 -6
- package/dist/esm/utilities/getCalibratedUnits.js.map +1 -1
- package/dist/esm/utilities/index.js +2 -1
- package/dist/esm/utilities/index.js.map +1 -1
- package/dist/esm/utilities/segmentation/contourAndFindLargestBidirectional.js +25 -0
- package/dist/esm/utilities/segmentation/contourAndFindLargestBidirectional.js.map +1 -0
- package/dist/esm/utilities/segmentation/createBidirectionalToolData.js +40 -0
- package/dist/esm/utilities/segmentation/createBidirectionalToolData.js.map +1 -0
- package/dist/esm/utilities/segmentation/findLargestBidirectional.js +96 -0
- package/dist/esm/utilities/segmentation/findLargestBidirectional.js.map +1 -0
- package/dist/esm/utilities/segmentation/index.js +4 -1
- package/dist/esm/utilities/segmentation/index.js.map +1 -1
- package/dist/esm/utilities/segmentation/isLineInSegment.js +50 -0
- package/dist/esm/utilities/segmentation/isLineInSegment.js.map +1 -0
- package/dist/esm/utilities/segmentation/segmentContourAction.js +98 -0
- package/dist/esm/utilities/segmentation/segmentContourAction.js.map +1 -0
- package/dist/types/drawingSvg/drawHandle.d.ts +5 -0
- package/dist/types/drawingSvg/drawHandle.d.ts.map +1 -0
- package/dist/types/drawingSvg/drawHandles.d.ts.map +1 -1
- package/dist/types/drawingSvg/index.d.ts +2 -1
- package/dist/types/drawingSvg/index.d.ts.map +1 -1
- package/dist/types/eventDispatchers/keyboardEventHandlers/keyDown.d.ts.map +1 -1
- package/dist/types/index.d.ts +2 -2
- package/dist/types/index.d.ts.map +1 -1
- package/dist/types/stateManagement/annotation/annotationState.d.ts.map +1 -1
- package/dist/types/tools/annotation/AngleTool.d.ts.map +1 -1
- package/dist/types/tools/annotation/BidirectionalTool.d.ts.map +1 -1
- package/dist/types/tools/annotation/LengthTool.d.ts.map +1 -1
- package/dist/types/tools/annotation/ProbeTool.d.ts.map +1 -1
- package/dist/types/tools/annotation/UltrasoundDirectionalTool.d.ts +37 -0
- package/dist/types/tools/annotation/UltrasoundDirectionalTool.d.ts.map +1 -0
- package/dist/types/tools/index.d.ts +2 -1
- package/dist/types/tools/index.d.ts.map +1 -1
- package/dist/types/types/ToolSpecificAnnotationTypes.d.ts +28 -0
- package/dist/types/types/ToolSpecificAnnotationTypes.d.ts.map +1 -1
- package/dist/types/types/index.d.ts +2 -1
- package/dist/types/types/index.d.ts.map +1 -1
- package/dist/types/utilities/contours/AnnotationToPointData.d.ts +12 -0
- package/dist/types/utilities/contours/AnnotationToPointData.d.ts.map +1 -0
- package/dist/types/utilities/contours/RectangleROIStartEndThreshold.d.ts +7 -0
- package/dist/types/utilities/contours/RectangleROIStartEndThreshold.d.ts.map +1 -0
- package/dist/types/utilities/contours/contourFinder.d.ts +8 -0
- package/dist/types/utilities/contours/contourFinder.d.ts.map +1 -0
- package/dist/types/utilities/contours/detectContourHoles.d.ts +6 -0
- package/dist/types/utilities/contours/detectContourHoles.d.ts.map +1 -0
- package/dist/types/utilities/contours/generateContourSetsFromLabelmap.d.ts +5 -0
- package/dist/types/utilities/contours/generateContourSetsFromLabelmap.d.ts.map +1 -0
- package/dist/types/utilities/contours/index.d.ts +7 -0
- package/dist/types/utilities/contours/index.d.ts.map +1 -0
- package/dist/types/utilities/contours/mergePoints.d.ts +9 -0
- package/dist/types/utilities/contours/mergePoints.d.ts.map +1 -0
- package/dist/types/utilities/getCalibratedUnits.d.ts +16 -2
- package/dist/types/utilities/getCalibratedUnits.d.ts.map +1 -1
- package/dist/types/utilities/index.d.ts +2 -1
- package/dist/types/utilities/index.d.ts.map +1 -1
- package/dist/types/utilities/segmentation/contourAndFindLargestBidirectional.d.ts +2 -0
- package/dist/types/utilities/segmentation/contourAndFindLargestBidirectional.d.ts.map +1 -0
- package/dist/types/utilities/segmentation/createBidirectionalToolData.d.ts +15 -0
- package/dist/types/utilities/segmentation/createBidirectionalToolData.d.ts.map +1 -0
- package/dist/types/utilities/segmentation/findLargestBidirectional.d.ts +2 -0
- package/dist/types/utilities/segmentation/findLargestBidirectional.d.ts.map +1 -0
- package/dist/types/utilities/segmentation/index.d.ts +4 -1
- package/dist/types/utilities/segmentation/index.d.ts.map +1 -1
- package/dist/types/utilities/segmentation/isLineInSegment.d.ts +10 -0
- package/dist/types/utilities/segmentation/isLineInSegment.d.ts.map +1 -0
- package/dist/types/utilities/segmentation/segmentContourAction.d.ts +18 -0
- package/dist/types/utilities/segmentation/segmentContourAction.d.ts.map +1 -0
- package/dist/umd/index.js +1 -1
- package/dist/umd/index.js.map +1 -1
- package/package.json +3 -3
- package/src/drawingSvg/drawHandle.ts +88 -0
- package/src/drawingSvg/drawHandles.ts +9 -75
- package/src/drawingSvg/index.ts +2 -0
- package/src/eventDispatchers/keyboardEventHandlers/keyDown.ts +7 -1
- package/src/index.ts +2 -0
- package/src/stateManagement/annotation/annotationState.ts +3 -0
- package/src/tools/annotation/AngleTool.ts +0 -1
- package/src/tools/annotation/BidirectionalTool.ts +9 -5
- package/src/tools/annotation/LengthTool.ts +6 -8
- package/src/tools/annotation/ProbeTool.ts +31 -7
- package/src/tools/annotation/UltrasoundDirectionalTool.ts +916 -0
- package/src/tools/index.ts +2 -0
- package/src/types/ToolSpecificAnnotationTypes.ts +29 -0
- package/src/types/index.ts +2 -0
- package/src/utilities/contours/AnnotationToPointData.ts +61 -0
- package/src/utilities/contours/RectangleROIStartEndThreshold.ts +60 -0
- package/src/utilities/contours/contourFinder.ts +78 -0
- package/src/utilities/contours/detectContourHoles.ts +147 -0
- package/src/utilities/contours/generateContourSetsFromLabelmap.ts +160 -0
- package/src/utilities/contours/index.ts +14 -0
- package/src/utilities/contours/mergePoints.ts +108 -0
- package/src/utilities/getCalibratedUnits.ts +203 -7
- package/src/utilities/index.ts +2 -0
- package/src/utilities/segmentation/contourAndFindLargestBidirectional.ts +46 -0
- package/src/utilities/segmentation/createBidirectionalToolData.ts +68 -0
- package/src/utilities/segmentation/findLargestBidirectional.ts +159 -0
- package/src/utilities/segmentation/index.ts +6 -0
- package/src/utilities/segmentation/isLineInSegment.ts +84 -0
- package/src/utilities/segmentation/segmentContourAction.ts +169 -0
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function findNextLink(line, lines, contourPoints) {
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let index = -1;
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lines.forEach((cell, i) => {
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if (index >= 0) {
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return;
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}
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if (cell.a == line.b) {
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index = i;
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}
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});
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if (index >= 0) {
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const nextLine = lines[index];
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lines.splice(index, 1);
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contourPoints.push(nextLine.b);
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if (contourPoints[0] == nextLine.b) {
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return {
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remainingLines: lines,
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contourPoints,
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type: 'CLOSED_PLANAR',
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};
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}
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return findNextLink(nextLine, lines, contourPoints);
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}
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return {
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remainingLines: lines,
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contourPoints,
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type: 'OPEN_PLANAR',
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};
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}
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export function findContours(lines) {
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if (lines.length == 0) {
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return [];
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}
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const contourPoints = [];
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const firstCell = lines.shift();
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contourPoints.push(firstCell.a);
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contourPoints.push(firstCell.b);
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const result = findNextLink(firstCell, lines, contourPoints);
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if (result.remainingLines.length == 0) {
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return [
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{
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type: result.type,
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contourPoints: result.contourPoints,
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},
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];
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}
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else {
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const extraContours = findContours(result.remainingLines);
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extraContours.push({
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type: result.type,
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contourPoints: result.contourPoints,
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});
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return extraContours;
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}
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}
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export function findContoursFromReducedSet(lines) {
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return findContours(lines);
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}
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export default {
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findContours,
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findContoursFromReducedSet,
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};
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//# sourceMappingURL=contourFinder.js.map
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const getIsPointInsidePolygon = (point, vertices) => {
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const x = point[0];
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const y = point[1];
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let inside = false;
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|
+
for (let i = 0, j = vertices.length - 1; i < vertices.length; j = i++) {
|
|
6
|
+
const xi = vertices[i][0], yi = vertices[i][1];
|
|
7
|
+
const xj = vertices[j][0], yj = vertices[j][1];
|
|
8
|
+
const intersect = yi > y != yj > y && x < ((xj - xi) * (y - yi)) / (yj - yi) + xi;
|
|
9
|
+
if (intersect) {
|
|
10
|
+
inside = !inside;
|
|
11
|
+
}
|
|
12
|
+
}
|
|
13
|
+
return inside;
|
|
14
|
+
};
|
|
15
|
+
function checkEnclosed(outerContour, innerContour, points) {
|
|
16
|
+
const vertices = [];
|
|
17
|
+
outerContour.contourPoints.forEach((point) => {
|
|
18
|
+
vertices.push([points[point][0], points[point][1]]);
|
|
19
|
+
});
|
|
20
|
+
let pointsNotEnclosed = 0;
|
|
21
|
+
innerContour.contourPoints.forEach((point) => {
|
|
22
|
+
const result = getIsPointInsidePolygon([points[point][0], points[point][1]], vertices);
|
|
23
|
+
if (!result) {
|
|
24
|
+
pointsNotEnclosed++;
|
|
25
|
+
}
|
|
26
|
+
});
|
|
27
|
+
return pointsNotEnclosed === 0;
|
|
28
|
+
}
|
|
29
|
+
export function processContourHoles(contours, points, useXOR = true) {
|
|
30
|
+
const retContours = contours.filter((contour) => contour.type !== 'CLOSED_PLANAR');
|
|
31
|
+
const closedContours = contours.filter((contour) => contour.type === 'CLOSED_PLANAR');
|
|
32
|
+
const contourWithHoles = [];
|
|
33
|
+
let contourWithoutHoles = [];
|
|
34
|
+
closedContours.forEach((contour, index) => {
|
|
35
|
+
const holes = [];
|
|
36
|
+
closedContours.forEach((hContour, hIndex) => {
|
|
37
|
+
if (index != hIndex) {
|
|
38
|
+
if (checkEnclosed(contour, hContour, points)) {
|
|
39
|
+
holes.push(hIndex);
|
|
40
|
+
}
|
|
41
|
+
}
|
|
42
|
+
});
|
|
43
|
+
if (holes.length > 0) {
|
|
44
|
+
contourWithHoles.push({
|
|
45
|
+
contour,
|
|
46
|
+
holes,
|
|
47
|
+
});
|
|
48
|
+
}
|
|
49
|
+
else {
|
|
50
|
+
contourWithoutHoles.push(index);
|
|
51
|
+
}
|
|
52
|
+
});
|
|
53
|
+
if (useXOR) {
|
|
54
|
+
contourWithHoles.forEach((contourHoleSet) => {
|
|
55
|
+
contourHoleSet.contour.type = 'CLOSEDPLANAR_XOR';
|
|
56
|
+
retContours.push(contourHoleSet.contour);
|
|
57
|
+
contourHoleSet.holes.forEach((holeIndex) => {
|
|
58
|
+
closedContours[holeIndex].type = 'CLOSEDPLANAR_XOR';
|
|
59
|
+
retContours.push(closedContours[holeIndex]);
|
|
60
|
+
contourWithoutHoles = contourWithoutHoles.filter((contourIndex) => {
|
|
61
|
+
return contourIndex !== holeIndex;
|
|
62
|
+
});
|
|
63
|
+
});
|
|
64
|
+
});
|
|
65
|
+
contourWithoutHoles.forEach((contourIndex) => {
|
|
66
|
+
retContours.push(closedContours[contourIndex]);
|
|
67
|
+
});
|
|
68
|
+
}
|
|
69
|
+
else {
|
|
70
|
+
}
|
|
71
|
+
return retContours;
|
|
72
|
+
}
|
|
73
|
+
export default { processContourHoles };
|
|
74
|
+
//# sourceMappingURL=detectContourHoles.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"detectContourHoles.js","sourceRoot":"","sources":["../../../../src/utilities/contours/detectContourHoles.ts"],"names":[],"mappings":"AAmBA,MAAM,uBAAuB,GAAG,CAAC,KAAK,EAAE,QAAQ,EAAE,EAAE;IAClD,MAAM,CAAC,GAAG,KAAK,CAAC,CAAC,CAAC,CAAC;IACnB,MAAM,CAAC,GAAG,KAAK,CAAC,CAAC,CAAC,CAAC;IAEnB,IAAI,MAAM,GAAG,KAAK,CAAC;IACnB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,QAAQ,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,EAAE,EAAE;QACrE,MAAM,EAAE,GAAG,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,EACvB,EAAE,GAAG,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;QACtB,MAAM,EAAE,GAAG,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,EACvB,EAAE,GAAG,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;QAEtB,MAAM,SAAS,GACb,EAAE,GAAG,CAAC,IAAI,EAAE,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,GAAG,EAAE,CAAC,GAAG,CAAC,CAAC,GAAG,EAAE,CAAC,CAAC,GAAG,CAAC,EAAE,GAAG,EAAE,CAAC,GAAG,EAAE,CAAC;QAClE,IAAI,SAAS,EAAE;YACb,MAAM,GAAG,CAAC,MAAM,CAAC;SAClB;KACF;IAED,OAAO,MAAM,CAAC;AAChB,CAAC,CAAC;AAQF,SAAS,aAAa,CAAC,YAAY,EAAE,YAAY,EAAE,MAAM;IACvD,MAAM,QAAQ,GAAG,EAAE,CAAC;IACpB,YAAY,CAAC,aAAa,CAAC,OAAO,CAAC,CAAC,KAAK,EAAE,EAAE;QAC3C,QAAQ,CAAC,IAAI,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,EAAE,MAAM,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;IACtD,CAAC,CAAC,CAAC;IAEH,IAAI,iBAAiB,GAAG,CAAC,CAAC;IAC1B,YAAY,CAAC,aAAa,CAAC,OAAO,CAAC,CAAC,KAAK,EAAE,EAAE;QAC3C,MAAM,MAAM,GAAG,uBAAuB,CACpC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,EAAE,MAAM,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,EACpC,QAAQ,CACT,CAAC;QAGF,IAAI,CAAC,MAAM,EAAE;YACX,iBAAiB,EAAE,CAAC;SACrB;IACH,CAAC,CAAC,CAAC;IAEH,OAAO,iBAAiB,KAAK,CAAC,CAAC;AACjC,CAAC;AAOD,MAAM,UAAU,mBAAmB,CAAC,QAAQ,EAAE,MAAM,EAAE,MAAM,GAAG,IAAI;IAIjE,MAAM,WAAW,GAAG,QAAQ,CAAC,MAAM,CACjC,CAAC,OAAO,EAAE,EAAE,CAAC,OAAO,CAAC,IAAI,KAAK,eAAe,CAC9C,CAAC;IAGF,MAAM,cAAc,GAAG,QAAQ,CAAC,MAAM,CACpC,CAAC,OAAO,EAAE,EAAE,CAAC,OAAO,CAAC,IAAI,KAAK,eAAe,CAC9C,CAAC;IAGF,MAAM,gBAAgB,GAAG,EAAE,CAAC;IAC5B,IAAI,mBAAmB,GAAG,EAAE,CAAC;IAC7B,cAAc,CAAC,OAAO,CAAC,CAAC,OAAO,EAAE,KAAK,EAAE,EAAE;QACxC,MAAM,KAAK,GAAG,EAAE,CAAC;QAGjB,cAAc,CAAC,OAAO,CAAC,CAAC,QAAQ,EAAE,MAAM,EAAE,EAAE;YAC1C,IAAI,KAAK,IAAI,MAAM,EAAE;gBAEnB,IAAI,aAAa,CAAC,OAAO,EAAE,QAAQ,EAAE,MAAM,CAAC,EAAE;oBAC5C,KAAK,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;iBACpB;aACF;QACH,CAAC,CAAC,CAAC;QAGH,IAAI,KAAK,CAAC,MAAM,GAAG,CAAC,EAAE;YAEpB,gBAAgB,CAAC,IAAI,CAAC;gBACpB,OAAO;gBACP,KAAK;aACN,CAAC,CAAC;SACJ;aAAM;YAEL,mBAAmB,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;SACjC;IACH,CAAC,CAAC,CAAC;IAEH,IAAI,MAAM,EAAE;QAEV,gBAAgB,CAAC,OAAO,CAAC,CAAC,cAAc,EAAE,EAAE;YAE1C,cAAc,CAAC,OAAO,CAAC,IAAI,GAAG,kBAAkB,CAAC;YACjD,WAAW,CAAC,IAAI,CAAC,cAAc,CAAC,OAAO,CAAC,CAAC;YAEzC,cAAc,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,SAAS,EAAE,EAAE;gBAGzC,cAAc,CAAC,SAAS,CAAC,CAAC,IAAI,GAAG,kBAAkB,CAAC;gBACpD,WAAW,CAAC,IAAI,CAAC,cAAc,CAAC,SAAS,CAAC,CAAC,CAAC;gBAG5C,mBAAmB,GAAG,mBAAmB,CAAC,MAAM,CAAC,CAAC,YAAY,EAAE,EAAE;oBAChE,OAAO,YAAY,KAAK,SAAS,CAAC;gBACpC,CAAC,CAAC,CAAC;YACL,CAAC,CAAC,CAAC;QACL,CAAC,CAAC,CAAC;QAGH,mBAAmB,CAAC,OAAO,CAAC,CAAC,YAAY,EAAE,EAAE;YAC3C,WAAW,CAAC,IAAI,CAAC,cAAc,CAAC,YAAY,CAAC,CAAC,CAAC;QACjD,CAAC,CAAC,CAAC;KACJ;SAAM;KAEN;IAED,OAAO,WAAW,CAAC;AACrB,CAAC;AAED,eAAe,EAAE,mBAAmB,EAAE,CAAC"}
|
|
@@ -0,0 +1,117 @@
|
|
|
1
|
+
import { cache as cornerstoneCache } from '@cornerstonejs/core';
|
|
2
|
+
import vtkImageMarchingSquares from '@kitware/vtk.js/Filters/General/ImageMarchingSquares';
|
|
3
|
+
import vtkDataArray from '@kitware/vtk.js/Common/Core/DataArray';
|
|
4
|
+
import vtkImageData from '@kitware/vtk.js/Common/DataModel/ImageData';
|
|
5
|
+
import { removeDuplicatePoints } from './mergePoints';
|
|
6
|
+
import { findContoursFromReducedSet } from './contourFinder';
|
|
7
|
+
import SegmentationRepresentations from '../../enums/SegmentationRepresentations';
|
|
8
|
+
const { Labelmap } = SegmentationRepresentations;
|
|
9
|
+
function generateContourSetsFromLabelmap({ segmentations }) {
|
|
10
|
+
const { representationData, segments = [0, 1] } = segmentations;
|
|
11
|
+
const { volumeId: segVolumeId } = representationData[Labelmap];
|
|
12
|
+
const vol = cornerstoneCache.getVolume(segVolumeId);
|
|
13
|
+
if (!vol) {
|
|
14
|
+
console.warn(`No volume found for ${segVolumeId}`);
|
|
15
|
+
return;
|
|
16
|
+
}
|
|
17
|
+
const numSlices = vol.dimensions[2];
|
|
18
|
+
const imageVol = cornerstoneCache.getVolume(vol.referencedVolumeId);
|
|
19
|
+
if (!imageVol) {
|
|
20
|
+
console.warn(`No volume found for ${vol.referencedVolumeId}`);
|
|
21
|
+
return;
|
|
22
|
+
}
|
|
23
|
+
const segData = vol.imageData.getPointData().getScalars().getData();
|
|
24
|
+
const pixelsPerSlice = vol.dimensions[0] * vol.dimensions[1];
|
|
25
|
+
for (let z = 0; z < numSlices; z++) {
|
|
26
|
+
for (let y = 0; y < vol.dimensions[1]; y++) {
|
|
27
|
+
const index = y * vol.dimensions[0] + z * pixelsPerSlice;
|
|
28
|
+
segData[index] = 0;
|
|
29
|
+
segData[index + vol.dimensions[0] - 1] = 0;
|
|
30
|
+
}
|
|
31
|
+
}
|
|
32
|
+
const ContourSets = [];
|
|
33
|
+
const { FrameOfReferenceUID } = imageVol.metadata;
|
|
34
|
+
const numSegments = segments.length;
|
|
35
|
+
for (let segIndex = 0; segIndex < numSegments; segIndex++) {
|
|
36
|
+
const segment = segments[segIndex];
|
|
37
|
+
if (!segment) {
|
|
38
|
+
continue;
|
|
39
|
+
}
|
|
40
|
+
const sliceContours = [];
|
|
41
|
+
const scalars = vtkDataArray.newInstance({
|
|
42
|
+
name: 'Scalars',
|
|
43
|
+
numberOfComponents: 1,
|
|
44
|
+
size: pixelsPerSlice * numSlices,
|
|
45
|
+
dataType: 'Uint8Array',
|
|
46
|
+
});
|
|
47
|
+
const { containedSegmentIndices } = segment;
|
|
48
|
+
for (let sliceIndex = 0; sliceIndex < numSlices; sliceIndex++) {
|
|
49
|
+
if (isSliceEmptyForSegment(sliceIndex, segData, pixelsPerSlice, segIndex)) {
|
|
50
|
+
continue;
|
|
51
|
+
}
|
|
52
|
+
const frameStart = sliceIndex * pixelsPerSlice;
|
|
53
|
+
try {
|
|
54
|
+
for (let i = 0; i < pixelsPerSlice; i++) {
|
|
55
|
+
const value = segData[i + frameStart];
|
|
56
|
+
if (value === segIndex || containedSegmentIndices?.has(value)) {
|
|
57
|
+
scalars.setValue(i + frameStart, 1);
|
|
58
|
+
}
|
|
59
|
+
else {
|
|
60
|
+
scalars.setValue(i, 0);
|
|
61
|
+
}
|
|
62
|
+
}
|
|
63
|
+
const mSquares = vtkImageMarchingSquares.newInstance({
|
|
64
|
+
slice: sliceIndex,
|
|
65
|
+
});
|
|
66
|
+
const imageDataCopy = vtkImageData.newInstance();
|
|
67
|
+
imageDataCopy.shallowCopy(vol.imageData);
|
|
68
|
+
imageDataCopy.getPointData().setScalars(scalars);
|
|
69
|
+
mSquares.setInputData(imageDataCopy);
|
|
70
|
+
const cValues = [1];
|
|
71
|
+
mSquares.setContourValues(cValues);
|
|
72
|
+
mSquares.setMergePoints(false);
|
|
73
|
+
const msOutput = mSquares.getOutputData();
|
|
74
|
+
const reducedSet = removeDuplicatePoints(msOutput);
|
|
75
|
+
if (reducedSet.points?.length) {
|
|
76
|
+
const contours = findContoursFromReducedSet(reducedSet.lines);
|
|
77
|
+
sliceContours.push({
|
|
78
|
+
referencedImageId: imageVol.imageIds[sliceIndex],
|
|
79
|
+
contours,
|
|
80
|
+
polyData: reducedSet,
|
|
81
|
+
FrameNumber: sliceIndex + 1,
|
|
82
|
+
sliceIndex,
|
|
83
|
+
FrameOfReferenceUID,
|
|
84
|
+
});
|
|
85
|
+
}
|
|
86
|
+
}
|
|
87
|
+
catch (e) {
|
|
88
|
+
console.warn(sliceIndex);
|
|
89
|
+
console.warn(e);
|
|
90
|
+
}
|
|
91
|
+
}
|
|
92
|
+
const metadata = {
|
|
93
|
+
referencedImageId: imageVol.imageIds[0],
|
|
94
|
+
FrameOfReferenceUID,
|
|
95
|
+
};
|
|
96
|
+
const ContourSet = {
|
|
97
|
+
label: segment.label,
|
|
98
|
+
color: segment.color,
|
|
99
|
+
metadata,
|
|
100
|
+
sliceContours,
|
|
101
|
+
};
|
|
102
|
+
ContourSets.push(ContourSet);
|
|
103
|
+
}
|
|
104
|
+
return ContourSets;
|
|
105
|
+
}
|
|
106
|
+
function isSliceEmptyForSegment(sliceIndex, segData, pixelsPerSlice, segIndex) {
|
|
107
|
+
const startIdx = sliceIndex * pixelsPerSlice;
|
|
108
|
+
const endIdx = startIdx + pixelsPerSlice;
|
|
109
|
+
for (let i = startIdx; i < endIdx; i++) {
|
|
110
|
+
if (segData[i] === segIndex) {
|
|
111
|
+
return false;
|
|
112
|
+
}
|
|
113
|
+
}
|
|
114
|
+
return true;
|
|
115
|
+
}
|
|
116
|
+
export { generateContourSetsFromLabelmap };
|
|
117
|
+
//# sourceMappingURL=generateContourSetsFromLabelmap.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"generateContourSetsFromLabelmap.js","sourceRoot":"","sources":["../../../../src/utilities/contours/generateContourSetsFromLabelmap.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,IAAI,gBAAgB,EAAE,MAAM,qBAAqB,CAAC;AAChE,OAAO,uBAAuB,MAAM,sDAAsD,CAAC;AAC3F,OAAO,YAAY,MAAM,uCAAuC,CAAC;AACjE,OAAO,YAAY,MAAM,4CAA4C,CAAC;AAEtE,OAAO,EAAE,qBAAqB,EAAE,MAAM,eAAe,CAAC;AACtD,OAAO,EAAE,0BAA0B,EAAE,MAAM,iBAAiB,CAAC;AAC7D,OAAO,2BAA2B,MAAM,yCAAyC,CAAC;AAElF,MAAM,EAAE,QAAQ,EAAE,GAAG,2BAA2B,CAAC;AAEjD,SAAS,+BAA+B,CAAC,EAAE,aAAa,EAAE;IACxD,MAAM,EAAE,kBAAkB,EAAE,QAAQ,GAAG,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,GAAG,aAAa,CAAC;IAChE,MAAM,EAAE,QAAQ,EAAE,WAAW,EAAE,GAAG,kBAAkB,CAAC,QAAQ,CAAC,CAAC;IAG/D,MAAM,GAAG,GAAG,gBAAgB,CAAC,SAAS,CAAC,WAAW,CAAC,CAAC;IACpD,IAAI,CAAC,GAAG,EAAE;QACR,OAAO,CAAC,IAAI,CAAC,uBAAuB,WAAW,EAAE,CAAC,CAAC;QACnD,OAAO;KACR;IAED,MAAM,SAAS,GAAG,GAAG,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC;IAGpC,MAAM,QAAQ,GAAG,gBAAgB,CAAC,SAAS,CAAC,GAAG,CAAC,kBAAkB,CAAC,CAAC;IACpE,IAAI,CAAC,QAAQ,EAAE;QACb,OAAO,CAAC,IAAI,CAAC,uBAAuB,GAAG,CAAC,kBAAkB,EAAE,CAAC,CAAC;QAC9D,OAAO;KACR;IAID,MAAM,OAAO,GAAG,GAAG,CAAC,SAAS,CAAC,YAAY,EAAE,CAAC,UAAU,EAAE,CAAC,OAAO,EAAE,CAAC;IACpE,MAAM,cAAc,GAAG,GAAG,CAAC,UAAU,CAAC,CAAC,CAAC,GAAG,GAAG,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC;IAE7D,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,SAAS,EAAE,CAAC,EAAE,EAAE;QAClC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,GAAG,CAAC,UAAU,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE;YAC1C,MAAM,KAAK,GAAG,CAAC,GAAG,GAAG,CAAC,UAAU,CAAC,CAAC,CAAC,GAAG,CAAC,GAAG,cAAc,CAAC;YACzD,OAAO,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC;YACnB,OAAO,CAAC,KAAK,GAAG,GAAG,CAAC,UAAU,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC;SAC5C;KACF;IAKD,MAAM,WAAW,GAAG,EAAE,CAAC;IAEvB,MAAM,EAAE,mBAAmB,EAAE,GAAG,QAAQ,CAAC,QAAQ,CAAC;IAElD,MAAM,WAAW,GAAG,QAAQ,CAAC,MAAM,CAAC;IACpC,KAAK,IAAI,QAAQ,GAAG,CAAC,EAAE,QAAQ,GAAG,WAAW,EAAE,QAAQ,EAAE,EAAE;QACzD,MAAM,OAAO,GAAG,QAAQ,CAAC,QAAQ,CAAC,CAAC;QAGnC,IAAI,CAAC,OAAO,EAAE;YACZ,SAAS;SACV;QAED,MAAM,aAAa,GAAG,EAAE,CAAC;QACzB,MAAM,OAAO,GAAG,YAAY,CAAC,WAAW,CAAC;YACvC,IAAI,EAAE,SAAS;YACf,kBAAkB,EAAE,CAAC;YACrB,IAAI,EAAE,cAAc,GAAG,SAAS;YAChC,QAAQ,EAAE,YAAY;SACvB,CAAC,CAAC;QACH,MAAM,EAAE,uBAAuB,EAAE,GAAG,OAAO,CAAC;QAC5C,KAAK,IAAI,UAAU,GAAG,CAAC,EAAE,UAAU,GAAG,SAAS,EAAE,UAAU,EAAE,EAAE;YAE7D,IACE,sBAAsB,CAAC,UAAU,EAAE,OAAO,EAAE,cAAc,EAAE,QAAQ,CAAC,EACrE;gBACA,SAAS;aACV;YACD,MAAM,UAAU,GAAG,UAAU,GAAG,cAAc,CAAC;YAE/C,IAAI;gBAEF,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,cAAc,EAAE,CAAC,EAAE,EAAE;oBACvC,MAAM,KAAK,GAAG,OAAO,CAAC,CAAC,GAAG,UAAU,CAAC,CAAC;oBACtC,IAAI,KAAK,KAAK,QAAQ,IAAI,uBAAuB,EAAE,GAAG,CAAC,KAAK,CAAC,EAAE;wBAC5D,OAAe,CAAC,QAAQ,CAAC,CAAC,GAAG,UAAU,EAAE,CAAC,CAAC,CAAC;qBAC9C;yBAAM;wBACJ,OAAe,CAAC,QAAQ,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC;qBACjC;iBACF;gBAED,MAAM,QAAQ,GAAG,uBAAuB,CAAC,WAAW,CAAC;oBACnD,KAAK,EAAE,UAAU;iBAClB,CAAC,CAAC;gBAIH,MAAM,aAAa,GAAG,YAAY,CAAC,WAAW,EAAE,CAAC;gBAEjD,aAAa,CAAC,WAAW,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC;gBACzC,aAAa,CAAC,YAAY,EAAE,CAAC,UAAU,CAAC,OAAO,CAAC,CAAC;gBAGjD,QAAQ,CAAC,YAAY,CAAC,aAAa,CAAC,CAAC;gBACrC,MAAM,OAAO,GAAG,CAAC,CAAC,CAAC,CAAC;gBACpB,QAAQ,CAAC,gBAAgB,CAAC,OAAO,CAAC,CAAC;gBACnC,QAAQ,CAAC,cAAc,CAAC,KAAK,CAAC,CAAC;gBAG/B,MAAM,QAAQ,GAAG,QAAQ,CAAC,aAAa,EAAE,CAAC;gBAG1C,MAAM,UAAU,GAAG,qBAAqB,CAAC,QAAQ,CAAC,CAAC;gBACnD,IAAI,UAAU,CAAC,MAAM,EAAE,MAAM,EAAE;oBAC7B,MAAM,QAAQ,GAAG,0BAA0B,CAAC,UAAU,CAAC,KAAK,CAAC,CAAC;oBAE9D,aAAa,CAAC,IAAI,CAAC;wBACjB,iBAAiB,EAAE,QAAQ,CAAC,QAAQ,CAAC,UAAU,CAAC;wBAChD,QAAQ;wBACR,QAAQ,EAAE,UAAU;wBACpB,WAAW,EAAE,UAAU,GAAG,CAAC;wBAC3B,UAAU;wBACV,mBAAmB;qBACpB,CAAC,CAAC;iBACJ;aACF;YAAC,OAAO,CAAC,EAAE;gBACV,OAAO,CAAC,IAAI,CAAC,UAAU,CAAC,CAAC;gBACzB,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;aACjB;SACF;QAED,MAAM,QAAQ,GAAG;YACf,iBAAiB,EAAE,QAAQ,CAAC,QAAQ,CAAC,CAAC,CAAC;YACvC,mBAAmB;SACpB,CAAC;QAEF,MAAM,UAAU,GAAG;YACjB,KAAK,EAAE,OAAO,CAAC,KAAK;YACpB,KAAK,EAAE,OAAO,CAAC,KAAK;YACpB,QAAQ;YACR,aAAa;SACd,CAAC;QAEF,WAAW,CAAC,IAAI,CAAC,UAAU,CAAC,CAAC;KAC9B;IAED,OAAO,WAAW,CAAC;AACrB,CAAC;AAED,SAAS,sBAAsB,CAAC,UAAU,EAAE,OAAO,EAAE,cAAc,EAAE,QAAQ;IAC3E,MAAM,QAAQ,GAAG,UAAU,GAAG,cAAc,CAAC;IAC7C,MAAM,MAAM,GAAG,QAAQ,GAAG,cAAc,CAAC;IAEzC,KAAK,IAAI,CAAC,GAAG,QAAQ,EAAE,CAAC,GAAG,MAAM,EAAE,CAAC,EAAE,EAAE;QACtC,IAAI,OAAO,CAAC,CAAC,CAAC,KAAK,QAAQ,EAAE;YAC3B,OAAO,KAAK,CAAC;SACd;KACF;IAED,OAAO,IAAI,CAAC;AACd,CAAC;AAED,OAAO,EAAE,+BAA+B,EAAE,CAAC"}
|
|
@@ -0,0 +1,7 @@
|
|
|
1
|
+
import contourFinder from './contourFinder';
|
|
2
|
+
import mergePoints from './mergePoints';
|
|
3
|
+
import detectContourHoles from './detectContourHoles';
|
|
4
|
+
import { generateContourSetsFromLabelmap } from './generateContourSetsFromLabelmap';
|
|
5
|
+
import AnnotationToPointData from './AnnotationToPointData';
|
|
6
|
+
export { contourFinder, mergePoints, detectContourHoles, generateContourSetsFromLabelmap, AnnotationToPointData, };
|
|
7
|
+
//# sourceMappingURL=index.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../../src/utilities/contours/index.ts"],"names":[],"mappings":"AAAA,OAAO,aAAa,MAAM,iBAAiB,CAAC;AAC5C,OAAO,WAAW,MAAM,eAAe,CAAC;AACxC,OAAO,kBAAkB,MAAM,sBAAsB,CAAC;AACtD,OAAO,EAAE,+BAA+B,EAAE,MAAM,mCAAmC,CAAC;AAEpF,OAAO,qBAAqB,MAAM,yBAAyB,CAAC;AAE5D,OAAO,EACL,aAAa,EACb,WAAW,EACX,kBAAkB,EAClB,+BAA+B,EAC/B,qBAAqB,GACtB,CAAC"}
|
|
@@ -0,0 +1,73 @@
|
|
|
1
|
+
function ptInArray(array, pt) {
|
|
2
|
+
let index = -1;
|
|
3
|
+
for (let i = 0; i < array.length; i++) {
|
|
4
|
+
if (isSamePoint(pt, array[i])) {
|
|
5
|
+
index = i;
|
|
6
|
+
}
|
|
7
|
+
}
|
|
8
|
+
return index;
|
|
9
|
+
}
|
|
10
|
+
function isSamePoint(ptA, ptB) {
|
|
11
|
+
if (ptA[0] == ptB[0] && ptA[1] == ptB[1] && ptA[2] == ptB[2]) {
|
|
12
|
+
return true;
|
|
13
|
+
}
|
|
14
|
+
else {
|
|
15
|
+
return false;
|
|
16
|
+
}
|
|
17
|
+
}
|
|
18
|
+
function replacePointIndexReferences(linesArray, oldIndex, newIndex) {
|
|
19
|
+
for (let i = 0; i < linesArray.length; i++) {
|
|
20
|
+
const line = linesArray[i];
|
|
21
|
+
if (line.a == oldIndex) {
|
|
22
|
+
line.a = newIndex;
|
|
23
|
+
}
|
|
24
|
+
else if (line.b == oldIndex) {
|
|
25
|
+
line.b = newIndex;
|
|
26
|
+
}
|
|
27
|
+
}
|
|
28
|
+
}
|
|
29
|
+
export function removeDuplicatePoints(polyData, bypass = false) {
|
|
30
|
+
const points = polyData.getPoints();
|
|
31
|
+
const lines = polyData.getLines();
|
|
32
|
+
const pointsArray = [];
|
|
33
|
+
for (let i = 0; i < points.getNumberOfPoints(); i++) {
|
|
34
|
+
const pt = points.getPoint(i).slice();
|
|
35
|
+
pointsArray.push(pt);
|
|
36
|
+
}
|
|
37
|
+
const linesArray = [];
|
|
38
|
+
for (let i = 0; i < lines.getNumberOfCells(); i++) {
|
|
39
|
+
const cell = lines.getCell(i * 3).slice();
|
|
40
|
+
const a = cell[0];
|
|
41
|
+
const b = cell[1];
|
|
42
|
+
const line = {
|
|
43
|
+
a,
|
|
44
|
+
b,
|
|
45
|
+
};
|
|
46
|
+
linesArray.push(line);
|
|
47
|
+
}
|
|
48
|
+
if (bypass) {
|
|
49
|
+
return { points: pointsArray, lines: linesArray };
|
|
50
|
+
}
|
|
51
|
+
const newPoints = [];
|
|
52
|
+
for (let i = 0; i < pointsArray.length; i++) {
|
|
53
|
+
const pt = pointsArray[i];
|
|
54
|
+
let index = ptInArray(newPoints, pt);
|
|
55
|
+
if (index >= 0) {
|
|
56
|
+
replacePointIndexReferences(linesArray, i, index);
|
|
57
|
+
}
|
|
58
|
+
else {
|
|
59
|
+
index = newPoints.length;
|
|
60
|
+
newPoints.push(pt);
|
|
61
|
+
replacePointIndexReferences(linesArray, i, index);
|
|
62
|
+
}
|
|
63
|
+
}
|
|
64
|
+
const newLines = [];
|
|
65
|
+
linesArray.forEach((line) => {
|
|
66
|
+
if (line.a != line.b) {
|
|
67
|
+
newLines.push(line);
|
|
68
|
+
}
|
|
69
|
+
});
|
|
70
|
+
return { points: newPoints, lines: newLines };
|
|
71
|
+
}
|
|
72
|
+
export default { removeDuplicatePoints };
|
|
73
|
+
//# sourceMappingURL=mergePoints.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"mergePoints.js","sourceRoot":"","sources":["../../../../src/utilities/contours/mergePoints.ts"],"names":[],"mappings":"AAMA,SAAS,SAAS,CAAC,KAAK,EAAE,EAAE;IAC1B,IAAI,KAAK,GAAG,CAAC,CAAC,CAAC;IACf,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;QACrC,IAAI,WAAW,CAAC,EAAE,EAAE,KAAK,CAAC,CAAC,CAAC,CAAC,EAAE;YAC7B,KAAK,GAAG,CAAC,CAAC;SACX;KACF;IACD,OAAO,KAAK,CAAC;AACf,CAAC;AAQD,SAAS,WAAW,CAAC,GAAG,EAAE,GAAG;IAC3B,IAAI,GAAG,CAAC,CAAC,CAAC,IAAI,GAAG,CAAC,CAAC,CAAC,IAAI,GAAG,CAAC,CAAC,CAAC,IAAI,GAAG,CAAC,CAAC,CAAC,IAAI,GAAG,CAAC,CAAC,CAAC,IAAI,GAAG,CAAC,CAAC,CAAC,EAAE;QAC5D,OAAO,IAAI,CAAC;KACb;SAAM;QACL,OAAO,KAAK,CAAC;KACd;AACH,CAAC;AAQD,SAAS,2BAA2B,CAAC,UAAU,EAAE,QAAQ,EAAE,QAAQ;IACjE,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,UAAU,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;QAC1C,MAAM,IAAI,GAAG,UAAU,CAAC,CAAC,CAAC,CAAC;QAC3B,IAAI,IAAI,CAAC,CAAC,IAAI,QAAQ,EAAE;YACtB,IAAI,CAAC,CAAC,GAAG,QAAQ,CAAC;SACnB;aAAM,IAAI,IAAI,CAAC,CAAC,IAAI,QAAQ,EAAE;YAC7B,IAAI,CAAC,CAAC,GAAG,QAAQ,CAAC;SACnB;KACF;AACH,CAAC;AASD,MAAM,UAAU,qBAAqB,CAAC,QAAQ,EAAE,MAAM,GAAG,KAAK;IAC5D,MAAM,MAAM,GAAG,QAAQ,CAAC,SAAS,EAAE,CAAC;IACpC,MAAM,KAAK,GAAG,QAAQ,CAAC,QAAQ,EAAE,CAAC;IAElC,MAAM,WAAW,GAAG,EAAE,CAAC;IACvB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,MAAM,CAAC,iBAAiB,EAAE,EAAE,CAAC,EAAE,EAAE;QACnD,MAAM,EAAE,GAAG,MAAM,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,KAAK,EAAE,CAAC;QACtC,WAAW,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;KACtB;IACD,MAAM,UAAU,GAAG,EAAE,CAAC;IACtB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,gBAAgB,EAAE,EAAE,CAAC,EAAE,EAAE;QACjD,MAAM,IAAI,GAAG,KAAK,CAAC,OAAO,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,KAAK,EAAE,CAAC;QAE1C,MAAM,CAAC,GAAG,IAAI,CAAC,CAAC,CAAC,CAAC;QAClB,MAAM,CAAC,GAAG,IAAI,CAAC,CAAC,CAAC,CAAC;QAClB,MAAM,IAAI,GAAG;YACX,CAAC;YACD,CAAC;SACF,CAAC;QACF,UAAU,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;KACvB;IAED,IAAI,MAAM,EAAE;QACV,OAAO,EAAE,MAAM,EAAE,WAAW,EAAE,KAAK,EAAE,UAAU,EAAE,CAAC;KACnD;IAGD,MAAM,SAAS,GAAG,EAAE,CAAC;IACrB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,WAAW,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;QAC3C,MAAM,EAAE,GAAG,WAAW,CAAC,CAAC,CAAC,CAAC;QAC1B,IAAI,KAAK,GAAG,SAAS,CAAC,SAAS,EAAE,EAAE,CAAC,CAAC;QAErC,IAAI,KAAK,IAAI,CAAC,EAAE;YAEd,2BAA2B,CAAC,UAAU,EAAE,CAAC,EAAE,KAAK,CAAC,CAAC;SACnD;aAAM;YACL,KAAK,GAAG,SAAS,CAAC,MAAM,CAAC;YACzB,SAAS,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;YACnB,2BAA2B,CAAC,UAAU,EAAE,CAAC,EAAE,KAAK,CAAC,CAAC;SACnD;KACF;IAGD,MAAM,QAAQ,GAAG,EAAE,CAAC;IACpB,UAAU,CAAC,OAAO,CAAC,CAAC,IAAI,EAAE,EAAE;QAC1B,IAAI,IAAI,CAAC,CAAC,IAAI,IAAI,CAAC,CAAC,EAAE;YACpB,QAAQ,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;SACrB;IACH,CAAC,CAAC,CAAC;IAEH,OAAO,EAAE,MAAM,EAAE,SAAS,EAAE,KAAK,EAAE,QAAQ,EAAE,CAAC;AAChD,CAAC;AAED,eAAe,EAAE,qBAAqB,EAAE,CAAC"}
|
|
@@ -1,16 +1,31 @@
|
|
|
1
|
-
import { Enums } from '@cornerstonejs/core';
|
|
1
|
+
import { Enums, utilities } from '@cornerstonejs/core';
|
|
2
2
|
const { CalibrationTypes } = Enums;
|
|
3
3
|
const PIXEL_UNITS = 'px';
|
|
4
|
+
const SUPPORTED_REGION_DATA_TYPES = [
|
|
5
|
+
1,
|
|
6
|
+
];
|
|
7
|
+
const SUPPORTED_LENGTH_VARIANT = [
|
|
8
|
+
'3,3',
|
|
9
|
+
];
|
|
10
|
+
const SUPPORTED_PROBE_VARIANT = [
|
|
11
|
+
'4,3',
|
|
12
|
+
];
|
|
13
|
+
const UNIT_MAPPING = {
|
|
14
|
+
3: 'cm',
|
|
15
|
+
4: 'seconds',
|
|
16
|
+
};
|
|
17
|
+
const EPS = 1e-3;
|
|
4
18
|
const getCalibratedLengthUnits = (handles, image) => {
|
|
5
19
|
const { calibration, hasPixelSpacing } = image;
|
|
6
20
|
const units = hasPixelSpacing ? 'mm' : PIXEL_UNITS;
|
|
7
|
-
if (!calibration ||
|
|
21
|
+
if (!calibration ||
|
|
22
|
+
(!calibration.type && !calibration.sequenceOfUltrasoundRegions)) {
|
|
8
23
|
return units;
|
|
9
24
|
}
|
|
10
25
|
if (calibration.type === CalibrationTypes.UNCALIBRATED) {
|
|
11
26
|
return PIXEL_UNITS;
|
|
12
27
|
}
|
|
13
|
-
if (calibration.
|
|
28
|
+
if (calibration.sequenceOfUltrasoundRegions) {
|
|
14
29
|
return 'US Region';
|
|
15
30
|
}
|
|
16
31
|
return `${units} ${calibration.type}`;
|
|
@@ -22,13 +37,117 @@ const getCalibratedAreaUnits = (handles, image) => {
|
|
|
22
37
|
if (!calibration || !calibration.type) {
|
|
23
38
|
return units;
|
|
24
39
|
}
|
|
25
|
-
if (calibration.
|
|
40
|
+
if (calibration.sequenceOfUltrasoundRegions) {
|
|
26
41
|
return 'US Region';
|
|
27
42
|
}
|
|
28
43
|
return `${units} ${calibration.type}`;
|
|
29
44
|
};
|
|
30
|
-
const getCalibratedScale = (image) =>
|
|
45
|
+
const getCalibratedScale = (image, handles = []) => {
|
|
46
|
+
if (image.calibration?.sequenceOfUltrasoundRegions) {
|
|
47
|
+
}
|
|
48
|
+
else if (image.calibration?.scale) {
|
|
49
|
+
return image.calibration.scale;
|
|
50
|
+
}
|
|
51
|
+
else {
|
|
52
|
+
return 1;
|
|
53
|
+
}
|
|
54
|
+
};
|
|
55
|
+
const getCalibratedLengthUnitsAndScale = (image, handles) => {
|
|
56
|
+
const [imageIndex1, imageIndex2] = handles;
|
|
57
|
+
const { calibration, hasPixelSpacing } = image;
|
|
58
|
+
let units = hasPixelSpacing ? 'mm' : PIXEL_UNITS;
|
|
59
|
+
const areaUnits = units + SQUARE;
|
|
60
|
+
let scale = 1;
|
|
61
|
+
let calibrationType = '';
|
|
62
|
+
if (!calibration ||
|
|
63
|
+
(!calibration.type && !calibration.sequenceOfUltrasoundRegions)) {
|
|
64
|
+
return { units, areaUnits, scale };
|
|
65
|
+
}
|
|
66
|
+
if (calibration.type === CalibrationTypes.UNCALIBRATED) {
|
|
67
|
+
return { units: PIXEL_UNITS, areaUnits: PIXEL_UNITS + SQUARE, scale };
|
|
68
|
+
}
|
|
69
|
+
if (calibration.sequenceOfUltrasoundRegions) {
|
|
70
|
+
let regions = calibration.sequenceOfUltrasoundRegions.filter((region) => imageIndex1[0] >= region.regionLocationMinX0 &&
|
|
71
|
+
imageIndex1[0] <= region.regionLocationMaxX1 &&
|
|
72
|
+
imageIndex1[1] >= region.regionLocationMinY0 &&
|
|
73
|
+
imageIndex1[1] <= region.regionLocationMaxY1 &&
|
|
74
|
+
imageIndex2[0] >= region.regionLocationMinX0 &&
|
|
75
|
+
imageIndex2[0] <= region.regionLocationMaxX1 &&
|
|
76
|
+
imageIndex2[1] >= region.regionLocationMinY0 &&
|
|
77
|
+
imageIndex2[1] <= region.regionLocationMaxY1);
|
|
78
|
+
if (!regions?.length) {
|
|
79
|
+
return { units, areaUnits, scale };
|
|
80
|
+
}
|
|
81
|
+
regions = regions.filter((region) => SUPPORTED_REGION_DATA_TYPES.includes(region.regionDataType) &&
|
|
82
|
+
SUPPORTED_LENGTH_VARIANT.includes(`${region.physicalUnitXDirection},${region.physicalUnitYDirection}`));
|
|
83
|
+
if (!regions.length) {
|
|
84
|
+
return { units: PIXEL_UNITS, areaUnits: PIXEL_UNITS + SQUARE, scale };
|
|
85
|
+
}
|
|
86
|
+
const region = regions[0];
|
|
87
|
+
const physicalDeltaX = Math.abs(region.physicalDeltaX);
|
|
88
|
+
const physicalDeltaY = Math.abs(region.physicalDeltaY);
|
|
89
|
+
const isSamePhysicalDelta = utilities.isEqual(physicalDeltaX, physicalDeltaY, EPS);
|
|
90
|
+
if (isSamePhysicalDelta) {
|
|
91
|
+
scale = 1 / (physicalDeltaX * physicalDeltaY * 100);
|
|
92
|
+
calibrationType = 'US Region';
|
|
93
|
+
units = 'mm';
|
|
94
|
+
}
|
|
95
|
+
else {
|
|
96
|
+
return { units: PIXEL_UNITS, areaUnits: PIXEL_UNITS + SQUARE, scale };
|
|
97
|
+
}
|
|
98
|
+
}
|
|
99
|
+
else if (calibration.scale) {
|
|
100
|
+
scale = calibration.scale;
|
|
101
|
+
}
|
|
102
|
+
return {
|
|
103
|
+
units: units + (calibrationType ? ` ${calibrationType}` : ''),
|
|
104
|
+
areaUnits: areaUnits + (calibrationType ? ` ${calibrationType}` : ''),
|
|
105
|
+
scale,
|
|
106
|
+
};
|
|
107
|
+
};
|
|
108
|
+
const getCalibratedProbeUnitsAndValue = (image, handles) => {
|
|
109
|
+
const [imageIndex] = handles;
|
|
110
|
+
const { calibration } = image;
|
|
111
|
+
let units = ['raw'];
|
|
112
|
+
let values = [null];
|
|
113
|
+
let calibrationType = '';
|
|
114
|
+
if (!calibration ||
|
|
115
|
+
(!calibration.type && !calibration.sequenceOfUltrasoundRegions)) {
|
|
116
|
+
return { units, values };
|
|
117
|
+
}
|
|
118
|
+
if (calibration.sequenceOfUltrasoundRegions) {
|
|
119
|
+
const supportedRegionsMetadata = calibration.sequenceOfUltrasoundRegions.filter((region) => SUPPORTED_REGION_DATA_TYPES.includes(region.regionDataType) &&
|
|
120
|
+
SUPPORTED_PROBE_VARIANT.includes(`${region.physicalUnitXDirection},${region.physicalUnitYDirection}`));
|
|
121
|
+
if (!supportedRegionsMetadata?.length) {
|
|
122
|
+
return { units, values };
|
|
123
|
+
}
|
|
124
|
+
const region = supportedRegionsMetadata.find((region) => imageIndex[0] >= region.regionLocationMinX0 &&
|
|
125
|
+
imageIndex[0] <= region.regionLocationMaxX1 &&
|
|
126
|
+
imageIndex[1] >= region.regionLocationMinY0 &&
|
|
127
|
+
imageIndex[1] <= region.regionLocationMaxY1);
|
|
128
|
+
if (!region) {
|
|
129
|
+
return { units, values };
|
|
130
|
+
}
|
|
131
|
+
const { referencePixelX0 = 0, referencePixelY0 = 0 } = region;
|
|
132
|
+
const { physicalDeltaX, physicalDeltaY } = region;
|
|
133
|
+
const yValue = (imageIndex[1] - region.regionLocationMinY0 - referencePixelY0) *
|
|
134
|
+
physicalDeltaY;
|
|
135
|
+
const xValue = (imageIndex[0] - region.regionLocationMinX0 - referencePixelX0) *
|
|
136
|
+
physicalDeltaX;
|
|
137
|
+
calibrationType = 'US Region';
|
|
138
|
+
values = [xValue, yValue];
|
|
139
|
+
units = [
|
|
140
|
+
UNIT_MAPPING[region.physicalUnitXDirection],
|
|
141
|
+
UNIT_MAPPING[region.physicalUnitYDirection],
|
|
142
|
+
];
|
|
143
|
+
}
|
|
144
|
+
return {
|
|
145
|
+
units,
|
|
146
|
+
values,
|
|
147
|
+
calibrationType,
|
|
148
|
+
};
|
|
149
|
+
};
|
|
31
150
|
const getCalibratedAspect = (image) => image.calibration?.aspect || 1;
|
|
32
151
|
export default getCalibratedLengthUnits;
|
|
33
|
-
export { getCalibratedAreaUnits, getCalibratedLengthUnits, getCalibratedScale, getCalibratedAspect, };
|
|
152
|
+
export { getCalibratedAreaUnits, getCalibratedLengthUnits, getCalibratedLengthUnitsAndScale, getCalibratedScale, getCalibratedAspect, getCalibratedProbeUnitsAndValue, };
|
|
34
153
|
//# sourceMappingURL=getCalibratedUnits.js.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"getCalibratedUnits.js","sourceRoot":"","sources":["../../../src/utilities/getCalibratedUnits.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,MAAM,qBAAqB,CAAC;
|
|
1
|
+
{"version":3,"file":"getCalibratedUnits.js","sourceRoot":"","sources":["../../../src/utilities/getCalibratedUnits.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,SAAS,EAAE,MAAM,qBAAqB,CAAC;AAEvD,MAAM,EAAE,gBAAgB,EAAE,GAAG,KAAK,CAAC;AACnC,MAAM,WAAW,GAAG,IAAI,CAAC;AAEzB,MAAM,2BAA2B,GAAG;IAClC,CAAC;CACF,CAAC;AAEF,MAAM,wBAAwB,GAAG;IAC/B,KAAK;CACN,CAAC;AAEF,MAAM,uBAAuB,GAAG;IAC9B,KAAK;CACN,CAAC;AAEF,MAAM,YAAY,GAAG;IACnB,CAAC,EAAE,IAAI;IACP,CAAC,EAAE,SAAS;CACb,CAAC;AAEF,MAAM,GAAG,GAAG,IAAI,CAAC;AAkBjB,MAAM,wBAAwB,GAAG,CAAC,OAAO,EAAE,KAAK,EAAU,EAAE;IAC1D,MAAM,EAAE,WAAW,EAAE,eAAe,EAAE,GAAG,KAAK,CAAC;IAE/C,MAAM,KAAK,GAAG,eAAe,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,WAAW,CAAC;IACnD,IACE,CAAC,WAAW;QACZ,CAAC,CAAC,WAAW,CAAC,IAAI,IAAI,CAAC,WAAW,CAAC,2BAA2B,CAAC,EAC/D;QACA,OAAO,KAAK,CAAC;KACd;IACD,IAAI,WAAW,CAAC,IAAI,KAAK,gBAAgB,CAAC,YAAY,EAAE;QACtD,OAAO,WAAW,CAAC;KACpB;IACD,IAAI,WAAW,CAAC,2BAA2B,EAAE;QAC3C,OAAO,WAAW,CAAC;KACpB;IACD,OAAO,GAAG,KAAK,IAAI,WAAW,CAAC,IAAI,EAAE,CAAC;AACxC,CAAC,CAAC;AAEF,MAAM,MAAM,GAAG,MAAM,CAAC;AAItB,MAAM,sBAAsB,GAAG,CAAC,OAAO,EAAE,KAAK,EAAU,EAAE;IACxD,MAAM,EAAE,WAAW,EAAE,eAAe,EAAE,GAAG,KAAK,CAAC;IAC/C,MAAM,KAAK,GAAG,CAAC,eAAe,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,WAAW,CAAC,GAAG,MAAM,CAAC;IAC9D,IAAI,CAAC,WAAW,IAAI,CAAC,WAAW,CAAC,IAAI,EAAE;QACrC,OAAO,KAAK,CAAC;KACd;IACD,IAAI,WAAW,CAAC,2BAA2B,EAAE;QAC3C,OAAO,WAAW,CAAC;KACpB;IACD,OAAO,GAAG,KAAK,IAAI,WAAW,CAAC,IAAI,EAAE,CAAC;AACxC,CAAC,CAAC;AAMF,MAAM,kBAAkB,GAAG,CAAC,KAAK,EAAE,OAAO,GAAG,EAAE,EAAE,EAAE;IACjD,IAAI,KAAK,CAAC,WAAW,EAAE,2BAA2B,EAAE;KAEnD;SAAM,IAAI,KAAK,CAAC,WAAW,EAAE,KAAK,EAAE;QACnC,OAAO,KAAK,CAAC,WAAW,CAAC,KAAK,CAAC;KAChC;SAAM;QACL,OAAO,CAAC,CAAC;KACV;AACH,CAAC,CAAC;AAUF,MAAM,gCAAgC,GAAG,CAAC,KAAK,EAAE,OAAO,EAAE,EAAE;IAC1D,MAAM,CAAC,WAAW,EAAE,WAAW,CAAC,GAAG,OAAO,CAAC;IAC3C,MAAM,EAAE,WAAW,EAAE,eAAe,EAAE,GAAG,KAAK,CAAC;IAC/C,IAAI,KAAK,GAAG,eAAe,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,WAAW,CAAC;IACjD,MAAM,SAAS,GAAG,KAAK,GAAG,MAAM,CAAC;IACjC,IAAI,KAAK,GAAG,CAAC,CAAC;IACd,IAAI,eAAe,GAAG,EAAE,CAAC;IAEzB,IACE,CAAC,WAAW;QACZ,CAAC,CAAC,WAAW,CAAC,IAAI,IAAI,CAAC,WAAW,CAAC,2BAA2B,CAAC,EAC/D;QACA,OAAO,EAAE,KAAK,EAAE,SAAS,EAAE,KAAK,EAAE,CAAC;KACpC;IAED,IAAI,WAAW,CAAC,IAAI,KAAK,gBAAgB,CAAC,YAAY,EAAE;QACtD,OAAO,EAAE,KAAK,EAAE,WAAW,EAAE,SAAS,EAAE,WAAW,GAAG,MAAM,EAAE,KAAK,EAAE,CAAC;KACvE;IAED,IAAI,WAAW,CAAC,2BAA2B,EAAE;QAC3C,IAAI,OAAO,GAAG,WAAW,CAAC,2BAA2B,CAAC,MAAM,CAC1D,CAAC,MAAM,EAAE,EAAE,CACT,WAAW,CAAC,CAAC,CAAC,IAAI,MAAM,CAAC,mBAAmB;YAC5C,WAAW,CAAC,CAAC,CAAC,IAAI,MAAM,CAAC,mBAAmB;YAC5C,WAAW,CAAC,CAAC,CAAC,IAAI,MAAM,CAAC,mBAAmB;YAC5C,WAAW,CAAC,CAAC,CAAC,IAAI,MAAM,CAAC,mBAAmB;YAC5C,WAAW,CAAC,CAAC,CAAC,IAAI,MAAM,CAAC,mBAAmB;YAC5C,WAAW,CAAC,CAAC,CAAC,IAAI,MAAM,CAAC,mBAAmB;YAC5C,WAAW,CAAC,CAAC,CAAC,IAAI,MAAM,CAAC,mBAAmB;YAC5C,WAAW,CAAC,CAAC,CAAC,IAAI,MAAM,CAAC,mBAAmB,CAC/C,CAAC;QAIF,IAAI,CAAC,OAAO,EAAE,MAAM,EAAE;YACpB,OAAO,EAAE,KAAK,EAAE,SAAS,EAAE,KAAK,EAAE,CAAC;SACpC;QAKD,OAAO,GAAG,OAAO,CAAC,MAAM,CACtB,CAAC,MAAM,EAAE,EAAE,CACT,2BAA2B,CAAC,QAAQ,CAAC,MAAM,CAAC,cAAc,CAAC;YAC3D,wBAAwB,CAAC,QAAQ,CAC/B,GAAG,MAAM,CAAC,sBAAsB,IAAI,MAAM,CAAC,sBAAsB,EAAE,CACpE,CACJ,CAAC;QAEF,IAAI,CAAC,OAAO,CAAC,MAAM,EAAE;YACnB,OAAO,EAAE,KAAK,EAAE,WAAW,EAAE,SAAS,EAAE,WAAW,GAAG,MAAM,EAAE,KAAK,EAAE,CAAC;SACvE;QAGD,MAAM,MAAM,GAAG,OAAO,CAAC,CAAC,CAAC,CAAC;QAE1B,MAAM,cAAc,GAAG,IAAI,CAAC,GAAG,CAAC,MAAM,CAAC,cAAc,CAAC,CAAC;QACvD,MAAM,cAAc,GAAG,IAAI,CAAC,GAAG,CAAC,MAAM,CAAC,cAAc,CAAC,CAAC;QAMvD,MAAM,mBAAmB,GAAG,SAAS,CAAC,OAAO,CAC3C,cAAc,EACd,cAAc,EACd,GAAG,CACJ,CAAC;QAEF,IAAI,mBAAmB,EAAE;YACvB,KAAK,GAAG,CAAC,GAAG,CAAC,cAAc,GAAG,cAAc,GAAG,GAAG,CAAC,CAAC;YACpD,eAAe,GAAG,WAAW,CAAC;YAC9B,KAAK,GAAG,IAAI,CAAC;SACd;aAAM;YACL,OAAO,EAAE,KAAK,EAAE,WAAW,EAAE,SAAS,EAAE,WAAW,GAAG,MAAM,EAAE,KAAK,EAAE,CAAC;SACvE;KACF;SAAM,IAAI,WAAW,CAAC,KAAK,EAAE;QAC5B,KAAK,GAAG,WAAW,CAAC,KAAK,CAAC;KAC3B;IAED,OAAO;QACL,KAAK,EAAE,KAAK,GAAG,CAAC,eAAe,CAAC,CAAC,CAAC,IAAI,eAAe,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;QAC7D,SAAS,EAAE,SAAS,GAAG,CAAC,eAAe,CAAC,CAAC,CAAC,IAAI,eAAe,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;QACrE,KAAK;KACN,CAAC;AACJ,CAAC,CAAC;AAEF,MAAM,+BAA+B,GAAG,CAAC,KAAK,EAAE,OAAO,EAAE,EAAE;IACzD,MAAM,CAAC,UAAU,CAAC,GAAG,OAAO,CAAC;IAC7B,MAAM,EAAE,WAAW,EAAE,GAAG,KAAK,CAAC;IAC9B,IAAI,KAAK,GAAG,CAAC,KAAK,CAAC,CAAC;IACpB,IAAI,MAAM,GAAG,CAAC,IAAI,CAAC,CAAC;IACpB,IAAI,eAAe,GAAG,EAAE,CAAC;IAEzB,IACE,CAAC,WAAW;QACZ,CAAC,CAAC,WAAW,CAAC,IAAI,IAAI,CAAC,WAAW,CAAC,2BAA2B,CAAC,EAC/D;QACA,OAAO,EAAE,KAAK,EAAE,MAAM,EAAE,CAAC;KAE1B;IAED,IAAI,WAAW,CAAC,2BAA2B,EAAE;QAE3C,MAAM,wBAAwB,GAC5B,WAAW,CAAC,2BAA2B,CAAC,MAAM,CAC5C,CAAC,MAAM,EAAE,EAAE,CACT,2BAA2B,CAAC,QAAQ,CAAC,MAAM,CAAC,cAAc,CAAC;YAC3D,uBAAuB,CAAC,QAAQ,CAC9B,GAAG,MAAM,CAAC,sBAAsB,IAAI,MAAM,CAAC,sBAAsB,EAAE,CACpE,CACJ,CAAC;QAEJ,IAAI,CAAC,wBAAwB,EAAE,MAAM,EAAE;YACrC,OAAO,EAAE,KAAK,EAAE,MAAM,EAAE,CAAC;SAC1B;QAED,MAAM,MAAM,GAAG,wBAAwB,CAAC,IAAI,CAC1C,CAAC,MAAM,EAAE,EAAE,CACT,UAAU,CAAC,CAAC,CAAC,IAAI,MAAM,CAAC,mBAAmB;YAC3C,UAAU,CAAC,CAAC,CAAC,IAAI,MAAM,CAAC,mBAAmB;YAC3C,UAAU,CAAC,CAAC,CAAC,IAAI,MAAM,CAAC,mBAAmB;YAC3C,UAAU,CAAC,CAAC,CAAC,IAAI,MAAM,CAAC,mBAAmB,CAC9C,CAAC;QAEF,IAAI,CAAC,MAAM,EAAE;YACX,OAAO,EAA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|
|
@@ -14,6 +14,7 @@ import scroll from './scroll';
|
|
|
14
14
|
import roundNumber from './roundNumber';
|
|
15
15
|
import { pointToString } from './pointToString';
|
|
16
16
|
import annotationFrameRange from './annotationFrameRange';
|
|
17
|
+
import * as contours from './contours';
|
|
17
18
|
import * as segmentation from './segmentation';
|
|
18
19
|
import * as drawing from './drawing';
|
|
19
20
|
import * as math from './math';
|
|
@@ -31,5 +32,5 @@ import * as dynamicVolume from './dynamicVolume';
|
|
|
31
32
|
import * as polyDataUtils from './polyData/utils';
|
|
32
33
|
import * as voi from './voi';
|
|
33
34
|
import { triggerEvent } from '@cornerstonejs/core';
|
|
34
|
-
export { math, planar, viewportFilters, drawing, debounce, dynamicVolume, throttle, orientation, isObject, touch, triggerEvent, calibrateImageSpacing, getCalibratedLengthUnits, getCalibratedAreaUnits, getCalibratedScale, segmentation, triggerAnnotationRenderForViewportIds, triggerAnnotationRender, pointInShapeCallback, pointInSurroundingSphereCallback, getAnnotationNearPoint, getAnnotationNearPointOnEnabledElement, jumpToSlice, viewport, cine, clip, boundingBox, rectangleROITool, planarFreehandROITool, stackPrefetch, stackContextPrefetch, scroll, roundNumber, pointToString, polyDataUtils, voi, annotationFrameRange, };
|
|
35
|
+
export { math, planar, viewportFilters, drawing, debounce, dynamicVolume, throttle, orientation, isObject, touch, triggerEvent, calibrateImageSpacing, getCalibratedLengthUnits, getCalibratedAreaUnits, getCalibratedScale, segmentation, contours, triggerAnnotationRenderForViewportIds, triggerAnnotationRender, pointInShapeCallback, pointInSurroundingSphereCallback, getAnnotationNearPoint, getAnnotationNearPointOnEnabledElement, jumpToSlice, viewport, cine, clip, boundingBox, rectangleROITool, planarFreehandROITool, stackPrefetch, stackContextPrefetch, scroll, roundNumber, pointToString, polyDataUtils, voi, annotationFrameRange, };
|
|
35
36
|
//# sourceMappingURL=index.js.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
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|
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1
|
+
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|
|
@@ -0,0 +1,25 @@
|
|
|
1
|
+
import { generateContourSetsFromLabelmap } from '../contours';
|
|
2
|
+
import SegmentationRepresentations from '../../enums/SegmentationRepresentations';
|
|
3
|
+
import findLargestBidirectional from './findLargestBidirectional';
|
|
4
|
+
const EPSILON = 1e-2;
|
|
5
|
+
const { Labelmap } = SegmentationRepresentations;
|
|
6
|
+
export default function contourAndFindLargestBidirectional(segmentation) {
|
|
7
|
+
const contours = generateContourSetsFromLabelmap({
|
|
8
|
+
segmentations: segmentation,
|
|
9
|
+
});
|
|
10
|
+
if (!contours?.length || !contours[0].sliceContours.length) {
|
|
11
|
+
return;
|
|
12
|
+
}
|
|
13
|
+
const { representationData, segments = [
|
|
14
|
+
null,
|
|
15
|
+
{ label: 'Unspecified', color: null, containedSegmentIndices: null },
|
|
16
|
+
], } = segmentation;
|
|
17
|
+
const { volumeId: segVolumeId } = representationData[Labelmap];
|
|
18
|
+
const segmentIndex = segments.findIndex((it) => !!it);
|
|
19
|
+
if (segmentIndex === -1) {
|
|
20
|
+
return;
|
|
21
|
+
}
|
|
22
|
+
segments[segmentIndex].segmentIndex = segmentIndex;
|
|
23
|
+
return findLargestBidirectional(contours[0], segVolumeId, segments[segmentIndex]);
|
|
24
|
+
}
|
|
25
|
+
//# sourceMappingURL=contourAndFindLargestBidirectional.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
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|
|
@@ -0,0 +1,40 @@
|
|
|
1
|
+
export default function createBidirectionalToolData(bidirectionalData, viewport) {
|
|
2
|
+
const { majorAxis, minorAxis, label = '', FrameOfReferenceUID, referencedImageId, } = bidirectionalData;
|
|
3
|
+
const [major0, major1] = majorAxis;
|
|
4
|
+
const [minor0, minor1] = minorAxis;
|
|
5
|
+
const { viewUp, viewPlaneNormal } = viewport.getCamera();
|
|
6
|
+
const points = [major0, major1, minor0, minor1];
|
|
7
|
+
const bidirectionalToolData = {
|
|
8
|
+
highlighted: true,
|
|
9
|
+
invalidated: true,
|
|
10
|
+
metadata: {
|
|
11
|
+
toolName: 'Bidirectional',
|
|
12
|
+
viewPlaneNormal,
|
|
13
|
+
viewUp,
|
|
14
|
+
FrameOfReferenceUID,
|
|
15
|
+
referencedImageId,
|
|
16
|
+
},
|
|
17
|
+
data: {
|
|
18
|
+
handles: {
|
|
19
|
+
points,
|
|
20
|
+
textBox: {
|
|
21
|
+
hasMoved: false,
|
|
22
|
+
worldPosition: [0, 0, 0],
|
|
23
|
+
worldBoundingBox: {
|
|
24
|
+
topLeft: [0, 0, 0],
|
|
25
|
+
topRight: [0, 0, 0],
|
|
26
|
+
bottomLeft: [0, 0, 0],
|
|
27
|
+
bottomRight: [0, 0, 0],
|
|
28
|
+
},
|
|
29
|
+
},
|
|
30
|
+
activeHandleIndex: null,
|
|
31
|
+
},
|
|
32
|
+
label,
|
|
33
|
+
cachedStats: {},
|
|
34
|
+
},
|
|
35
|
+
isLocked: false,
|
|
36
|
+
isVisible: true,
|
|
37
|
+
};
|
|
38
|
+
return bidirectionalToolData;
|
|
39
|
+
}
|
|
40
|
+
//# sourceMappingURL=createBidirectionalToolData.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"createBidirectionalToolData.js","sourceRoot":"","sources":["../../../../src/utilities/segmentation/createBidirectionalToolData.ts"],"names":[],"mappings":"AAmBA,MAAM,CAAC,OAAO,UAAU,2BAA2B,CACjD,iBAAoC,EACpC,QAAQ;IAER,MAAM,EACJ,SAAS,EACT,SAAS,EACT,KAAK,GAAG,EAAE,EACV,mBAAmB,EACnB,iBAAiB,GAClB,GAAG,iBAAiB,CAAC;IACtB,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,GAAG,SAAS,CAAC;IACnC,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,GAAG,SAAS,CAAC;IAEnC,MAAM,EAAE,MAAM,EAAE,eAAe,EAAE,GAAG,QAAQ,CAAC,SAAS,EAAE,CAAC;IACzD,MAAM,MAAM,GAAG,CAAC,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,CAAC,CAAC;IAChD,MAAM,qBAAqB,GAAG;QAC5B,WAAW,EAAE,IAAI;QACjB,WAAW,EAAE,IAAI;QACjB,QAAQ,EAAE;YACR,QAAQ,EAAE,eAAe;YACzB,eAAe;YACf,MAAM;YACN,mBAAmB;YACnB,iBAAiB;SAClB;QACD,IAAI,EAAE;YACJ,OAAO,EAAE;gBACP,MAAM;gBACN,OAAO,EAAE;oBACP,QAAQ,EAAE,KAAK;oBACf,aAAa,EAAE,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAiB;oBACxC,gBAAgB,EAAE;wBAChB,OAAO,EAAE,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAiB;wBAClC,QAAQ,EAAE,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAiB;wBACnC,UAAU,EAAE,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAiB;wBACrC,WAAW,EAAE,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAiB;qBACvC;iBACF;gBACD,iBAAiB,EAAE,IAAI;aACxB;YACD,KAAK;YACL,WAAW,EAAE,EAAE;SAChB;QACD,QAAQ,EAAE,KAAK;QACf,SAAS,EAAE,IAAI;KAChB,CAAC;IACF,OAAO,qBAAqB,CAAC;AAC/B,CAAC"}
|