@cornerstonejs/tools 1.36.2 → 1.37.0

package/dist/esm/tools/segmentation/strategies/eraseSphere.js.map

@@ -1 +1 @@
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package/dist/esm/tools/segmentation/strategies/fillCircle.js

@@ -1,99 +1,75 @@
 import { vec3 } from 'gl-matrix';
-import { cache } from '@cornerstonejs/core';
 import { utilities as csUtils } from '@cornerstonejs/core';
-import { getCanvasEllipseCorners, pointInEllipse, } from '../../../utilities/math/ellipse';
+import { getCanvasEllipseCorners, precalculatePointInEllipse, } from '../../../utilities/math/ellipse';
+import pointInSphere from '../../../utilities/math/sphere/pointInSphere';
 import { getBoundingBoxAroundShape } from '../../../utilities/boundingBox';
-import { triggerSegmentationDataModified } from '../../../stateManagement/segmentation/triggerSegmentationEvents';
-import { pointInShapeCallback } from '../../../utilities';
-import isWithinThreshold from './utils/isWithinThreshold';
-import { getStrategyData } from './utils/getStrategyData';
-import { isVolumeSegmentation } from './utils/stackVolumeCheck';
+import BrushStrategy from './BrushStrategy';
+import { StrategyCallbacks } from '../../../enums';
+import compositions from './compositions';
 const { transformWorldToIndex } = csUtils;
-function fillCircle(enabledElement, operationData, threshold = false) {
-    const { points, segmentsLocked, segmentIndex, segmentationId, strategySpecificConfiguration, } = operationData;
-    const { viewport } = enabledElement;
-    const data = getStrategyData({ operationData, viewport });
-    if (!data) {
-        console.warn('No data found for fillCircle');
-        return;
-    }
-    const { imageScalarData, segmentationImageData, segmentationScalarData } = data;
-    const { ellipseObj, boundsIJK } = getEllipse(viewport, segmentationImageData, points);
-    const modifiedSlicesToUse = new Set();
-    let callback;
-    if (threshold) {
-        callback = ({ value, index, pointIJK }) => {
-            if (segmentsLocked.includes(value)) {
-                return;
-            }
-            if (isWithinThreshold(index, imageScalarData, strategySpecificConfiguration)) {
-                segmentationScalarData[index] = segmentIndex;
-                modifiedSlicesToUse.add(pointIJK[2]);
-            }
-        };
-    }
-    else {
-        callback = ({ value, index, pointIJK }) => {
-            if (segmentsLocked.includes(value)) {
-                return;
-            }
-            segmentationScalarData[index] = segmentIndex;
-            modifiedSlicesToUse.add(pointIJK[2]);
-        };
-    }
-    pointInShapeCallback(segmentationImageData, (pointLPS) => pointInEllipse(ellipseObj, pointLPS, {
-        fast: true,
-    }), callback, boundsIJK);
-    const arrayOfSlices = Array.from(modifiedSlicesToUse);
-    triggerSegmentationDataModified(segmentationId, arrayOfSlices);
-}
-export function fillInsideCircle(enabledElement, operationData) {
-    fillCircle(enabledElement, operationData, false);
-}
-export function thresholdInsideCircle(enabledElement, operationData) {
-    if (isVolumeSegmentation(operationData)) {
-        const { referencedVolumeId, volumeId } = operationData;
-        const imageVolume = cache.getVolume(referencedVolumeId);
-        const segmentation = cache.getVolume(volumeId);
-        if (!csUtils.isEqual(segmentation.dimensions, imageVolume.dimensions) ||
-            !csUtils.isEqual(segmentation.direction, imageVolume.direction)) {
-            throw new Error('Only source data the same dimensions/size/orientation as the segmentation currently supported.');
+const EPSILON = 1e-4;
+const nearOrZero = (testValue, nearValue) => Math.abs(testValue) < EPSILON || Math.abs(testValue - nearValue) < EPSILON;
+const initializeCircle = {
+    [StrategyCallbacks.Initialize]: (operationData) => {
+        const { points, imageVoxelManager: imageVoxelManager, viewport, segmentationImageData, segmentationVoxelManager: segmentationVoxelManager, } = operationData;
+        if (!points) {
+            return;
         }
-    }
-    fillCircle(enabledElement, operationData, true);
-}
-export function fillOutsideCircle(enabledElement, operationData) {
-    throw new Error('Not yet implemented');
-}
-function getCenter(points) {
-    const center = vec3.fromValues(0, 0, 0);
-    points.forEach((point) => {
-        vec3.add(center, center, point);
-    });
-    vec3.scale(center, center, 1 / points.length);
-    return center;
-}
-function getEllipse(viewport, imageData, points) {
-    const center = getCenter(points);
-    const canvasCoordinates = points.map((p) => viewport.worldToCanvas(p));
-    const dimensions = imageData.getDimensions();
-    const [topLeftCanvas, bottomRightCanvas] = getCanvasEllipseCorners(canvasCoordinates);
-    const topLeftWorld = viewport.canvasToWorld(topLeftCanvas);
-    const bottomRightWorld = viewport.canvasToWorld(bottomRightCanvas);
-    const ellipsoidCornersIJK = [
-        transformWorldToIndex(imageData, topLeftWorld),
-        transformWorldToIndex(imageData, bottomRightWorld),
-    ];
-    const boundsIJK = getBoundingBoxAroundShape(ellipsoidCornersIJK, dimensions);
-    if (boundsIJK.every(([min, max]) => min !== max)) {
-        throw new Error('Oblique segmentation tools are not supported yet');
+        const center = vec3.fromValues(0, 0, 0);
+        points.forEach((point) => {
+            vec3.add(center, center, point);
+        });
+        vec3.scale(center, center, 1 / points.length);
+        operationData.centerWorld = center;
+        operationData.centerIJK = transformWorldToIndex(segmentationImageData, center);
+        const canvasCoordinates = points.map((p) => viewport.worldToCanvas(p));
+        const [topLeftCanvas, bottomRightCanvas] = getCanvasEllipseCorners(canvasCoordinates);
+        const topLeftWorld = viewport.canvasToWorld(topLeftCanvas);
+        const bottomRightWorld = viewport.canvasToWorld(bottomRightCanvas);
+        const ellipsoidCornersIJK = [
+            transformWorldToIndex(segmentationImageData, topLeftWorld),
+            (transformWorldToIndex(segmentationImageData, bottomRightWorld)),
+        ];
+        segmentationVoxelManager.boundsIJK = getBoundingBoxAroundShape(ellipsoidCornersIJK, segmentationVoxelManager.dimensions);
+        imageVoxelManager.isInObject = createPointInEllipse({
+            topLeftWorld,
+            bottomRightWorld,
+            center,
+        });
+    },
+};
+function createPointInEllipse(worldInfo) {
+    const { topLeftWorld, bottomRightWorld, center } = worldInfo;
+    const xRadius = Math.abs(topLeftWorld[0] - bottomRightWorld[0]) / 2;
+    const yRadius = Math.abs(topLeftWorld[1] - bottomRightWorld[1]) / 2;
+    const zRadius = Math.abs(topLeftWorld[2] - bottomRightWorld[2]) / 2;
+    const radius = Math.max(xRadius, yRadius, zRadius);
+    if (nearOrZero(xRadius, radius) &&
+        nearOrZero(yRadius, radius) &&
+        nearOrZero(zRadius, radius)) {
+        const sphereObj = {
+            center,
+            radius,
+            radius2: radius * radius,
+        };
+        return (pointLPS) => pointInSphere(sphereObj, pointLPS);
     }
     const ellipseObj = {
         center: center,
-        xRadius: Math.abs(topLeftWorld[0] - bottomRightWorld[0]) / 2,
-        yRadius: Math.abs(topLeftWorld[1] - bottomRightWorld[1]) / 2,
-        zRadius: Math.abs(topLeftWorld[2] - bottomRightWorld[2]) / 2,
+        xRadius,
+        yRadius,
+        zRadius,
     };
-    return { ellipseObj, boundsIJK };
+    const inverts = precalculatePointInEllipse(ellipseObj);
+    const { precalculated } = inverts;
+    return precalculated;
+}
+const CIRCLE_STRATEGY = new BrushStrategy('Circle', compositions.regionFill, compositions.setValue, initializeCircle, compositions.determineSegmentIndex, compositions.preview);
+const CIRCLE_THRESHOLD_STRATEGY = new BrushStrategy('CircleThreshold', compositions.regionFill, compositions.setValue, initializeCircle, compositions.determineSegmentIndex, compositions.dynamicThreshold, compositions.threshold, compositions.preview, compositions.islandRemoval);
+const fillInsideCircle = CIRCLE_STRATEGY.strategyFunction;
+const thresholdInsideCircle = CIRCLE_THRESHOLD_STRATEGY.strategyFunction;
+export function fillOutsideCircle() {
+    throw new Error('Not yet implemented');
 }
+export { CIRCLE_STRATEGY, CIRCLE_THRESHOLD_STRATEGY, fillInsideCircle, thresholdInsideCircle, createPointInEllipse as createEllipseInPoint, };
 //# sourceMappingURL=fillCircle.js.map

package/dist/esm/tools/segmentation/strategies/fillCircle.js.map

@@ -1 +1 @@
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+{"version":3,"file":"fillCircle.js","sourceRoot":"","sources":["../../../../../src/tools/segmentation/strategies/fillCircle.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;AACjC,OAAO,EAAE,SAAS,IAAI,OAAO,EAAE,MAAM,qBAAqB,CAAC;AAG3D,OAAO,EACL,uBAAuB,EACvB,0BAA0B,GAC3B,MAAM,iCAAiC,CAAC;AACzC,OAAO,aAAa,MAAM,8CAA8C,CAAC;AACzE,OAAO,EAAE,yBAAyB,EAAE,MAAM,gCAAgC,CAAC;AAC3E,OAAO,aAAa,MAAM,iBAAiB,CAAC;AAG5C,OAAO,EAAE,iBAAiB,EAAE,MAAM,gBAAgB,CAAC;AACnD,OAAO,YAAY,MAAM,gBAAgB,CAAC;AAE1C,MAAM,EAAE,qBAAqB,EAAE,GAAG,OAAO,CAAC;AAC1C,MAAM,OAAO,GAAG,IAAI,CAAC;AACrB,MAAM,UAAU,GAAG,CAAC,SAAS,EAAE,SAAS,EAAE,EAAE,CAC1C,IAAI,CAAC,GAAG,CAAC,SAAS,CAAC,GAAG,OAAO,IAAI,IAAI,CAAC,GAAG,CAAC,SAAS,GAAG,SAAS,CAAC,GAAG,OAAO,CAAC;AAE7E,MAAM,gBAAgB,GAAG;IACvB,CAAC,iBAAiB,CAAC,UAAU,CAAC,EAAE,CAAC,aAAuC,EAAE,EAAE;QAC1E,MAAM,EACJ,MAAM,EACN,iBAAiB,EAAE,iBAAiB,EACpC,QAAQ,EACR,qBAAqB,EACrB,wBAAwB,EAAE,wBAAwB,GACnD,GAAG,aAAa,CAAC;QAGlB,IAAI,CAAC,MAAM,EAAE;YACX,OAAO;SACR;QAED,MAAM,MAAM,GAAG,IAAI,CAAC,UAAU,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC;QACxC,MAAM,CAAC,OAAO,CAAC,CAAC,KAAK,EAAE,EAAE;YACvB,IAAI,CAAC,GAAG,CAAC,MAAM,EAAE,MAAM,EAAE,KAAK,CAAC,CAAC;QAClC,CAAC,CAAC,CAAC;QACH,IAAI,CAAC,KAAK,CAAC,MAAM,EAAE,MAAM,EAAE,CAAC,GAAG,MAAM,CAAC,MAAM,CAAC,CAAC;QAE9C,aAAa,CAAC,WAAW,GAAG,MAAsB,CAAC;QACnD,aAAa,CAAC,SAAS,GAAG,qBAAqB,CAC7C,qBAAqB,EACrB,MAAsB,CACvB,CAAC;QACF,MAAM,iBAAiB,GAAG,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CACzC,QAAQ,CAAC,aAAa,CAAC,CAAC,CAAC,CACL,CAAC;QAIvB,MAAM,CAAC,aAAa,EAAE,iBAAiB,CAAC,GACtC,uBAAuB,CAAC,iBAAiB,CAAC,CAAC;QAG7C,MAAM,YAAY,GAAG,QAAQ,CAAC,aAAa,CAAC,aAAa,CAAC,CAAC;QAC3D,MAAM,gBAAgB,GAAG,QAAQ,CAAC,aAAa,CAAC,iBAAiB,CAAC,CAAC;QAEnE,MAAM,mBAAmB,GAAG;YACZ,qBAAqB,CAAC,qBAAqB,EAAE,YAAY,CAAC;YAC1D,CACZ,qBAAqB,CAAC,qBAAqB,EAAE,gBAAgB,CAAC,CAC/D;SACF,CAAC;QAEF,wBAAwB,CAAC,SAAS,GAAG,yBAAyB,CAC5D,mBAAmB,EACnB,wBAAwB,CAAC,UAAU,CACpC,CAAC;QACF,iBAAiB,CAAC,UAAU,GAAG,oBAAoB,CAAC;YAClD,YAAY;YACZ,gBAAgB;YAChB,MAAM;SACP,CAAC,CAAC;IACL,CAAC;CACa,CAAC;AAUjB,SAAS,oBAAoB,CAAC,SAI7B;IACC,MAAM,EAAE,YAAY,EAAE,gBAAgB,EAAE,MAAM,EAAE,GAAG,SAAS,CAAC;IAE7D,MAAM,OAAO,GAAG,IAAI,CAAC,GAAG,CAAC,YAAY,CAAC,CAAC,CAAC,GAAG,gBAAgB,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC;IACpE,MAAM,OAAO,GAAG,IAAI,CAAC,GAAG,CAAC,YAAY,CAAC,CAAC,CAAC,GAAG,gBAAgB,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC;IACpE,MAAM,OAAO,GAAG,IAAI,CAAC,GAAG,CAAC,YAAY,CAAC,CAAC,CAAC,GAAG,gBAAgB,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC;IAEpE,MAAM,MAAM,GAAG,IAAI,CAAC,GAAG,CAAC,OAAO,EAAE,OAAO,EAAE,OAAO,CAAC,CAAC;IACnD,IACE,UAAU,CAAC,OAAO,EAAE,MAAM,CAAC;QAC3B,UAAU,CAAC,OAAO,EAAE,MAAM,CAAC;QAC3B,UAAU,CAAC,OAAO,EAAE,MAAM,CAAC,EAC3B;QACA,MAAM,SAAS,GAAG;YAChB,MAAM;YACN,MAAM;YACN,OAAO,EAAE,MAAM,GAAG,MAAM;SACzB,CAAC;QACF,OAAO,CAAC,QAAQ,EAAE,EAAE,CAAC,aAAa,CAAC,SAAS,EAAE,QAAQ,CAAC,CAAC;KACzD;IAED,MAAM,UAAU,GAAG;QACjB,MAAM,EAAE,MAAsB;QAC9B,OAAO;QACP,OAAO;QACP,OAAO;KACR,CAAC;IACF,MAAM,OAAO,GAAG,0BAA0B,CAAC,UAAU,CAAC,CAAC;IACvD,MAAM,EAAE,aAAa,EAAE,GAAG,OAAO,CAAC;IAElC,OAAO,aAAa,CAAC;AACvB,CAAC;AAED,MAAM,eAAe,GAAG,IAAI,aAAa,CACvC,QAAQ,EACR,YAAY,CAAC,UAAU,EACvB,YAAY,CAAC,QAAQ,EACrB,gBAAgB,EAChB,YAAY,CAAC,qBAAqB,EAClC,YAAY,CAAC,OAAO,CACrB,CAAC;AAEF,MAAM,yBAAyB,GAAG,IAAI,aAAa,CACjD,iBAAiB,EACjB,YAAY,CAAC,UAAU,EACvB,YAAY,CAAC,QAAQ,EACrB,gBAAgB,EAChB,YAAY,CAAC,qBAAqB,EAClC,YAAY,CAAC,gBAAgB,EAC7B,YAAY,CAAC,SAAS,EACtB,YAAY,CAAC,OAAO,EACpB,YAAY,CAAC,aAAa,CAC3B,CAAC;AAQF,MAAM,gBAAgB,GAAG,eAAe,CAAC,gBAAgB,CAAC;AAQ1D,MAAM,qBAAqB,GAAG,yBAAyB,CAAC,gBAAgB,CAAC;AAQzE,MAAM,UAAU,iBAAiB;IAC/B,MAAM,IAAI,KAAK,CAAC,qBAAqB,CAAC,CAAC;AACzC,CAAC;AAED,OAAO,EACL,eAAe,EACf,yBAAyB,EACzB,gBAAgB,EAChB,qBAAqB,EACrB,oBAAoB,IAAI,oBAAoB,GAC7C,CAAC"}

package/dist/esm/tools/segmentation/strategies/fillRectangle.js

@@ -5,7 +5,7 @@ import { triggerSegmentationDataModified } from '../../../stateManagement/segmen
 import { getStrategyData } from './utils/getStrategyData';
 const { transformWorldToIndex } = csUtils;
 function fillRectangle(enabledElement, operationData, inside = true) {
-    const { points, segmentsLocked, segmentIndex, segmentationId, constraintFn } = operationData;
+    const { points, segmentsLocked, segmentIndex, segmentationId } = operationData;
     const strategyData = getStrategyData({
         operationData,
         viewport: enabledElement.viewport,
@@ -25,17 +25,11 @@ function fillRectangle(enabledElement, operationData, inside = true) {
     });
     const boundsIJK = getBoundingBoxAroundShape(rectangleCornersIJK, segmentationImageData.getDimensions());
     const pointInRectangle = () => true;
-    const callback = ({ value, index, pointIJK }) => {
+    const callback = ({ value, index }) => {
         if (segmentsLocked.includes(value)) {
             return;
         }
-        if (!constraintFn) {
-            segmentationScalarData[index] = segmentIndex;
-            return;
-        }
-        if (constraintFn(pointIJK)) {
-            segmentationScalarData[index] = segmentIndex;
-        }
+        segmentationScalarData[index] = segmentIndex;
     };
     pointInShapeCallback(segmentationImageData, pointInRectangle, callback, boundsIJK);
     triggerSegmentationDataModified(segmentationId);

package/dist/esm/tools/segmentation/strategies/fillRectangle.js.map

@@ -1 +1 @@
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package/dist/esm/tools/segmentation/strategies/fillSphere.js

@@ -1,67 +1,56 @@
-import { cache, utilities as csUtils } from '@cornerstonejs/core';
-import { triggerSegmentationDataModified } from '../../../stateManagement/segmentation/triggerSegmentationEvents';
-import { pointInSurroundingSphereCallback } from '../../../utilities';
-import isWithinThreshold from './utils/isWithinThreshold';
-import { getStrategyData } from './utils/getStrategyData';
-import { isVolumeSegmentation } from './utils/stackVolumeCheck';
-function fillSphere(enabledElement, operationData, _inside = true, threshold = false) {
-    const { viewport } = enabledElement;
-    const { segmentsLocked, segmentIndex, strategySpecificConfiguration, points, } = operationData;
-    const strategyData = getStrategyData({ operationData, viewport });
-    if (!strategyData) {
-        console.warn('No data found for fillSphere');
-        return;
-    }
-    const { imageScalarData, segmentationImageData, segmentationScalarData } = strategyData;
-    const scalarIndex = [];
-    let callback;
-    if (threshold) {
-        callback = ({ value, index }) => {
-            if (segmentsLocked.includes(value)) {
-                return;
-            }
-            if (isWithinThreshold(index, imageScalarData, strategySpecificConfiguration)) {
-                segmentationScalarData[index] = segmentIndex;
-                scalarIndex.push(index);
-            }
-        };
-    }
-    else {
-        callback = ({ index, value }) => {
-            if (segmentsLocked.includes(value)) {
-                return;
-            }
-            segmentationScalarData[index] = segmentIndex;
-            scalarIndex.push(index);
-        };
-    }
-    pointInSurroundingSphereCallback(segmentationImageData, [points[0], points[1]], callback, viewport);
-    const dimensions = segmentationImageData.getDimensions();
-    let sliceArray;
-    if (isVolumeSegmentation(operationData)) {
-        const zMultiple = dimensions[0] * dimensions[1];
-        const minSlice = Math.floor(scalarIndex[0] / zMultiple);
-        const maxSlice = Math.floor(scalarIndex[scalarIndex.length - 1] / zMultiple);
-        sliceArray = Array.from({ length: maxSlice - minSlice + 1 }, (v, k) => k + minSlice);
-        triggerSegmentationDataModified(operationData.volumeId, sliceArray);
-    }
-}
-export function fillInsideSphere(enabledElement, operationData) {
-    fillSphere(enabledElement, operationData, true);
-}
-export function thresholdInsideSphere(enabledElement, operationData) {
-    if (isVolumeSegmentation(operationData)) {
-        const { referencedVolumeId, volumeId } = operationData;
-        const imageVolume = cache.getVolume(referencedVolumeId);
-        const segmentation = cache.getVolume(volumeId);
-        if (!csUtils.isEqual(segmentation.dimensions, imageVolume.dimensions) ||
-            !csUtils.isEqual(segmentation.direction, imageVolume.direction)) {
-            throw new Error('Only source data the same dimensions/size/orientation as the segmentation currently supported.');
+import { utilities as csUtils } from '@cornerstonejs/core';
+import { vec3 } from 'gl-matrix';
+import { getCanvasEllipseCorners } from '../../../utilities/math/ellipse';
+import { getBoundingBoxAroundShape } from '../../../utilities/boundingBox';
+import BrushStrategy from './BrushStrategy';
+import compositions from './compositions';
+import StrategyCallbacks from '../../../enums/StrategyCallbacks';
+import { createEllipseInPoint } from './fillCircle';
+const { transformWorldToIndex } = csUtils;
+const sphereComposition = {
+    [StrategyCallbacks.Initialize]: (operationData) => {
+        const { points, imageVoxelManager: imageVoxelManager, viewport, segmentationImageData, segmentationVoxelManager: segmentationVoxelManager, } = operationData;
+        if (!points) {
+            return;
         }
-    }
-    fillSphere(enabledElement, operationData, true, true);
-}
-export function fillOutsideSphere(enabledElement, operationData) {
-    fillSphere(enabledElement, operationData, false);
+        const center = vec3.fromValues(0, 0, 0);
+        points.forEach((point) => {
+            vec3.add(center, center, point);
+        });
+        vec3.scale(center, center, 1 / points.length);
+        operationData.centerWorld = center;
+        operationData.centerIJK = transformWorldToIndex(segmentationImageData, center);
+        const canvasCoordinates = points.map((p) => viewport.worldToCanvas(p));
+        const [topLeftCanvas, bottomRightCanvas] = getCanvasEllipseCorners(canvasCoordinates);
+        const topLeftWorld = viewport.canvasToWorld(topLeftCanvas);
+        const bottomRightWorld = viewport.canvasToWorld(bottomRightCanvas);
+        const diameters = topLeftWorld.map((left, index) => Math.abs(bottomRightWorld[index] - left));
+        const radius = Math.max(...diameters) / 2;
+        topLeftWorld.forEach((left, index) => {
+            const right = bottomRightWorld[index];
+            if (left === right) {
+                topLeftWorld[index] = left - radius;
+                bottomRightWorld[index] = left + radius;
+            }
+        });
+        const ellipsoidCornersIJK = [
+            transformWorldToIndex(segmentationImageData, topLeftWorld),
+            (transformWorldToIndex(segmentationImageData, bottomRightWorld)),
+        ];
+        segmentationVoxelManager.boundsIJK = getBoundingBoxAroundShape(ellipsoidCornersIJK, segmentationVoxelManager.dimensions);
+        imageVoxelManager.isInObject = createEllipseInPoint({
+            topLeftWorld,
+            bottomRightWorld,
+            center,
+        });
+    },
+};
+const SPHERE_STRATEGY = new BrushStrategy('Sphere', compositions.regionFill, compositions.setValue, sphereComposition, compositions.determineSegmentIndex, compositions.preview);
+const fillInsideSphere = SPHERE_STRATEGY.strategyFunction;
+const SPHERE_THRESHOLD_STRATEGY = new BrushStrategy('SphereThreshold', ...SPHERE_STRATEGY.compositions, compositions.dynamicThreshold, compositions.threshold, compositions.islandRemoval);
+const thresholdInsideSphere = SPHERE_THRESHOLD_STRATEGY.strategyFunction;
+export function fillOutsideSphere() {
+    throw new Error('fill outside sphere not implemented');
 }
+export { fillInsideSphere, thresholdInsideSphere, SPHERE_STRATEGY };
 //# sourceMappingURL=fillSphere.js.map

package/dist/esm/tools/segmentation/strategies/fillSphere.js.map

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+{"version":3,"file":"fillSphere.js","sourceRoot":"","sources":["../../../../../src/tools/segmentation/strategies/fillSphere.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,SAAS,IAAI,OAAO,EAAE,MAAM,qBAAqB,CAAC;AAC3D,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;AAEjC,OAAO,EAAE,uBAAuB,EAAE,MAAM,iCAAiC,CAAC;AAC1E,OAAO,EAAE,yBAAyB,EAAE,MAAM,gCAAgC,CAAC;AAC3E,OAAO,aAAa,MAAM,iBAAiB,CAAC;AAG5C,OAAO,YAAY,MAAM,gBAAgB,CAAC;AAC1C,OAAO,iBAAiB,MAAM,kCAAkC,CAAC;AACjE,OAAO,EAAE,oBAAoB,EAAE,MAAM,cAAc,CAAC;AACpD,MAAM,EAAE,qBAAqB,EAAE,GAAG,OAAO,CAAC;AAE1C,MAAM,iBAAiB,GAAG;IACxB,CAAC,iBAAiB,CAAC,UAAU,CAAC,EAAE,CAAC,aAAuC,EAAE,EAAE;QAC1E,MAAM,EACJ,MAAM,EACN,iBAAiB,EAAE,iBAAiB,EACpC,QAAQ,EACR,qBAAqB,EACrB,wBAAwB,EAAE,wBAAwB,GACnD,GAAG,aAAa,CAAC;QAGlB,IAAI,CAAC,MAAM,EAAE;YACX,OAAO;SACR;QAED,MAAM,MAAM,GAAG,IAAI,CAAC,UAAU,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC;QACxC,MAAM,CAAC,OAAO,CAAC,CAAC,KAAK,EAAE,EAAE;YACvB,IAAI,CAAC,GAAG,CAAC,MAAM,EAAE,MAAM,EAAE,KAAK,CAAC,CAAC;QAClC,CAAC,CAAC,CAAC;QACH,IAAI,CAAC,KAAK,CAAC,MAAM,EAAE,MAAM,EAAE,CAAC,GAAG,MAAM,CAAC,MAAM,CAAC,CAAC;QAE9C,aAAa,CAAC,WAAW,GAAG,MAAsB,CAAC;QACnD,aAAa,CAAC,SAAS,GAAG,qBAAqB,CAC7C,qBAAqB,EACrB,MAAsB,CACvB,CAAC;QACF,MAAM,iBAAiB,GAAG,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CACzC,QAAQ,CAAC,aAAa,CAAC,CAAC,CAAC,CACL,CAAC;QAIvB,MAAM,CAAC,aAAa,EAAE,iBAAiB,CAAC,GACtC,uBAAuB,CAAC,iBAAiB,CAAC,CAAC;QAG7C,MAAM,YAAY,GAAG,QAAQ,CAAC,aAAa,CAAC,aAAa,CAAC,CAAC;QAC3D,MAAM,gBAAgB,GAAG,QAAQ,CAAC,aAAa,CAAC,iBAAiB,CAAC,CAAC;QAEnE,MAAM,SAAS,GAAG,YAAY,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,KAAK,EAAE,EAAE,CACjD,IAAI,CAAC,GAAG,CAAC,gBAAgB,CAAC,KAAK,CAAC,GAAG,IAAI,CAAC,CACzC,CAAC;QACF,MAAM,MAAM,GAAG,IAAI,CAAC,GAAG,CAAC,GAAG,SAAS,CAAC,GAAG,CAAC,CAAC;QAE1C,YAAY,CAAC,OAAO,CAAC,CAAC,IAAI,EAAE,KAAK,EAAE,EAAE;YACnC,MAAM,KAAK,GAAG,gBAAgB,CAAC,KAAK,CAAC,CAAC;YACtC,IAAI,IAAI,KAAK,KAAK,EAAE;gBAClB,YAAY,CAAC,KAAK,CAAC,GAAG,IAAI,GAAG,MAAM,CAAC;gBACpC,gBAAgB,CAAC,KAAK,CAAC,GAAG,IAAI,GAAG,MAAM,CAAC;aACzC;QACH,CAAC,CAAC,CAAC;QAEH,MAAM,mBAAmB,GAAG;YACZ,qBAAqB,CAAC,qBAAqB,EAAE,YAAY,CAAC;YAC1D,CACZ,qBAAqB,CAAC,qBAAqB,EAAE,gBAAgB,CAAC,CAC/D;SACF,CAAC;QAEF,wBAAwB,CAAC,SAAS,GAAG,yBAAyB,CAC5D,mBAAmB,EACnB,wBAAwB,CAAC,UAAU,CACpC,CAAC;QAEF,iBAAiB,CAAC,UAAU,GAAG,oBAAoB,CAAC;YAClD,YAAY;YACZ,gBAAgB;YAChB,MAAM;SACP,CAAC,CAAC;IACL,CAAC;CACa,CAAC;AAEjB,MAAM,eAAe,GAAG,IAAI,aAAa,CACvC,QAAQ,EACR,YAAY,CAAC,UAAU,EACvB,YAAY,CAAC,QAAQ,EACrB,iBAAiB,EACjB,YAAY,CAAC,qBAAqB,EAClC,YAAY,CAAC,OAAO,CACrB,CAAC;AAQF,MAAM,gBAAgB,GAAG,eAAe,CAAC,gBAAgB,CAAC;AAE1D,MAAM,yBAAyB,GAAG,IAAI,aAAa,CACjD,iBAAiB,EACjB,GAAG,eAAe,CAAC,YAAY,EAC/B,YAAY,CAAC,gBAAgB,EAC7B,YAAY,CAAC,SAAS,EACtB,YAAY,CAAC,aAAa,CAC3B,CAAC;AASF,MAAM,qBAAqB,GAAG,yBAAyB,CAAC,gBAAgB,CAAC;AAQzE,MAAM,UAAU,iBAAiB;IAC/B,MAAM,IAAI,KAAK,CAAC,qCAAqC,CAAC,CAAC;AACzD,CAAC;AAED,OAAO,EAAE,gBAAgB,EAAE,qBAAqB,EAAE,eAAe,EAAE,CAAC"}

package/dist/esm/tools/segmentation/strategies/utils/getStrategyData.js

@@ -1,7 +1,9 @@
-import { cache } from '@cornerstonejs/core';
+import { cache, utilities } from '@cornerstonejs/core';
 import { isVolumeSegmentation } from './stackVolumeCheck';
+const { VoxelManager } = utilities;
 function getStrategyData({ operationData, viewport }) {
     let segmentationImageData, segmentationScalarData, imageScalarData;
+    let dimensions;
     if (isVolumeSegmentation(operationData)) {
         const { volumeId, referencedVolumeId } = operationData;
         const segmentationVolume = cache.getVolume(volumeId);
@@ -12,6 +14,7 @@ function getStrategyData({ operationData, viewport }) {
         ({ imageData: segmentationImageData } = segmentationVolume);
         segmentationScalarData = segmentationVolume.getScalarData();
         imageScalarData = imageVolume.getScalarData();
+        dimensions = imageVolume.dimensions;
     }
     else {
         const { imageIdReferenceMap, segmentationRepresentationUID } = operationData;
@@ -29,11 +32,14 @@ function getStrategyData({ operationData, viewport }) {
         segmentationScalarData = segmentationImage.getPixelData();
         const image = cache.getImage(currentImageId);
         imageScalarData = image.getPixelData();
+        dimensions = [image.columns, image.rows, 1];
     }
     return {
         segmentationImageData,
         segmentationScalarData,
+        segmentationVoxelManager: VoxelManager.createVolumeVoxelManager(dimensions, segmentationScalarData),
         imageScalarData,
+        imageVoxelManager: VoxelManager.createVolumeVoxelManager(dimensions, imageScalarData),
     };
 }
 export { getStrategyData };

package/dist/esm/tools/segmentation/strategies/utils/getStrategyData.js.map

@@ -1 +1 @@
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+{"version":3,"file":"getStrategyData.js","sourceRoot":"","sources":["../../../../../../src/tools/segmentation/strategies/utils/getStrategyData.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,SAAS,EAAE,MAAM,qBAAqB,CAAC;AAEvD,OAAO,EAAE,oBAAoB,EAAE,MAAM,oBAAoB,CAAC;AAG1D,MAAM,EAAE,YAAY,EAAE,GAAG,SAAS,CAAC;AAEnC,SAAS,eAAe,CAAC,EAAE,aAAa,EAAE,QAAQ,EAAE;IAClD,IAAI,qBAAqB,EAAE,sBAAsB,EAAE,eAAe,CAAC;IACnE,IAAI,UAAwB,CAAC;IAC7B,IAAI,oBAAoB,CAAC,aAAa,CAAC,EAAE;QACvC,MAAM,EAAE,QAAQ,EAAE,kBAAkB,EAAE,GAAG,aAAa,CAAC;QAEvD,MAAM,kBAAkB,GAAG,KAAK,CAAC,SAAS,CAAC,QAAQ,CAAC,CAAC;QACrD,MAAM,WAAW,GAAG,KAAK,CAAC,SAAS,CAAC,kBAAkB,CAAC,CAAC;QAExD,IAAI,CAAC,kBAAkB,IAAI,CAAC,WAAW,EAAE;YACvC,OAAO;SACR;QAED,CAAC,EAAE,SAAS,EAAE,qBAAqB,EAAE,GAAG,kBAAkB,CAAC,CAAC;QAC5D,sBAAsB,GAAG,kBAAkB,CAAC,aAAa,EAAE,CAAC;QAC5D,eAAe,GAAG,WAAW,CAAC,aAAa,EAAE,CAAC;QAC9C,UAAU,GAAG,WAAW,CAAC,UAAU,CAAC;KACrC;SAAM;QACL,MAAM,EAAE,mBAAmB,EAAE,6BAA6B,EAAE,GAC1D,aAA+C,CAAC;QAElD,IAAI,CAAC,mBAAmB,EAAE;YACxB,OAAO;SACR;QAED,MAAM,cAAc,GAAG,QAAQ,CAAC,iBAAiB,EAAE,CAAC;QACpD,IAAI,CAAC,cAAc,EAAE;YACnB,OAAO;SACR;QAKD,MAAM,KAAK,GAAG,QAAQ,CAAC,QAAQ,CAAC,6BAA6B,CAAC,CAAC;QAC/D,qBAAqB,GAAG,KAAK,CAAC,KAAK,CAAC,SAAS,EAAE,CAAC,YAAY,EAAE,CAAC;QAC/D,MAAM,0BAA0B,GAAG,mBAAmB,CAAC,GAAG,CAAC,cAAc,CAAC,CAAC;QAE3E,MAAM,iBAAiB,GAAG,KAAK,CAAC,QAAQ,CAAC,0BAA0B,CAAC,CAAC;QACrE,sBAAsB,GAAG,iBAAiB,CAAC,YAAY,EAAE,CAAC;QAE1D,MAAM,KAAK,GAAG,KAAK,CAAC,QAAQ,CAAC,cAAc,CAAC,CAAC;QAK7C,eAAe,GAAG,KAAK,CAAC,YAAY,EAAE,CAAC;QACvC,UAAU,GAAG,CAAC,KAAK,CAAC,OAAO,EAAE,KAAK,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC;KAC7C;IAED,OAAO;QACL,qBAAqB;QACrB,sBAAsB;QACtB,wBAAwB,EAAE,YAAY,CAAC,wBAAwB,CAC7D,UAAU,EACV,sBAAsB,CACvB;QACD,eAAe;QACf,iBAAiB,EAAE,YAAY,CAAC,wBAAwB,CACtD,UAAU,EACV,eAAe,CAChB;KACF,CAAC;AACJ,CAAC;AAED,OAAO,EAAE,eAAe,EAAE,CAAC"}

package/dist/esm/tools/segmentation/strategies/utils/isWithinThreshold.js

@@ -1,7 +1,7 @@
 function isWithinThreshold(index, imageScalarData, strategySpecificConfiguration) {
-    const { THRESHOLD_INSIDE_CIRCLE } = strategySpecificConfiguration;
+    const { THRESHOLD, THRESHOLD_INSIDE_CIRCLE } = strategySpecificConfiguration;
     const voxelValue = imageScalarData[index];
-    const { threshold } = THRESHOLD_INSIDE_CIRCLE;
+    const { threshold } = THRESHOLD || THRESHOLD_INSIDE_CIRCLE;
     return threshold[0] <= voxelValue && voxelValue <= threshold[1];
 }
 export default isWithinThreshold;

package/dist/esm/tools/segmentation/strategies/utils/isWithinThreshold.js.map

@@ -1 +1 @@
-{"version":3,"file":"isWithinThreshold.js","sourceRoot":"","sources":["../../../../../../src/tools/segmentation/strategies/utils/isWithinThreshold.ts"],"names":[],"mappings":"AAGA,SAAS,iBAAiB,CACxB,KAAa,EACb,eAA2B,EAC3B,6BAAkC;IAElC,MAAM,EAAE,uBAAuB,EAAE,GAAG,6BAA6B,CAAC;IAElE,MAAM,UAAU,GAAG,eAAe,CAAC,KAAK,CAAC,CAAC;IAC1C,MAAM,EAAE,SAAS,EAAE,GAAG,uBAAuB,CAAC;IAE9C,OAAO,SAAS,CAAC,CAAC,CAAC,IAAI,UAAU,IAAI,UAAU,IAAI,SAAS,CAAC,CAAC,CAAC,CAAC;AAClE,CAAC;AAED,eAAe,iBAAiB,CAAC"}
+{"version":3,"file":"isWithinThreshold.js","sourceRoot":"","sources":["../../../../../../src/tools/segmentation/strategies/utils/isWithinThreshold.ts"],"names":[],"mappings":"AAEA,SAAS,iBAAiB,CACxB,KAAa,EACb,eAAuC,EACvC,6BAAkC;IAElC,MAAM,EAAE,SAAS,EAAE,uBAAuB,EAAE,GAAG,6BAA6B,CAAC;IAE7E,MAAM,UAAU,GAAG,eAAe,CAAC,KAAK,CAAC,CAAC;IAG1C,MAAM,EAAE,SAAS,EAAE,GAAG,SAAS,IAAI,uBAAuB,CAAC;IAC3D,OAAO,SAAS,CAAC,CAAC,CAAC,IAAI,UAAU,IAAI,UAAU,IAAI,SAAS,CAAC,CAAC,CAAC,CAAC;AAClE,CAAC;AAED,eAAe,iBAAiB,CAAC"}

package/dist/esm/utilities/math/ellipse/index.js

@@ -1,4 +1,4 @@
-import pointInEllipse from './pointInEllipse';
+import pointInEllipse, { precalculatePointInEllipse } from './pointInEllipse';
 import getCanvasEllipseCorners from './getCanvasEllipseCorners';
-export { pointInEllipse, getCanvasEllipseCorners };
+export { pointInEllipse, precalculatePointInEllipse, getCanvasEllipseCorners };
 //# sourceMappingURL=index.js.map

package/dist/esm/utilities/math/ellipse/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../../../src/utilities/math/ellipse/index.ts"],"names":[],"mappings":"AAAA,OAAO,cAAc,MAAM,kBAAkB,CAAC;AAC9C,OAAO,uBAAuB,MAAM,2BAA2B,CAAC;AAEhE,OAAO,EAAE,cAAc,EAAE,uBAAuB,EAAE,CAAC"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../../../src/utilities/math/ellipse/index.ts"],"names":[],"mappings":"AAAA,OAAO,cAAc,EAAE,EAAE,0BAA0B,EAAE,MAAM,kBAAkB,CAAC;AAC9E,OAAO,uBAAuB,MAAM,2BAA2B,CAAC;AAEhE,OAAO,EAAE,cAAc,EAAE,0BAA0B,EAAE,uBAAuB,EAAE,CAAC"}

package/dist/esm/utilities/math/ellipse/pointInEllipse.js

@@ -1,5 +1,11 @@
 export default function pointInEllipse(ellipse, pointLPS, inverts = {}) {
-    const { center, xRadius, yRadius, zRadius } = ellipse;
+    if (!inverts.precalculated) {
+        precalculatePointInEllipse(ellipse, inverts);
+    }
+    return inverts.precalculated(pointLPS);
+}
+const precalculatePointInEllipse = (ellipse, inverts = {}) => {
+    const { xRadius, yRadius, zRadius } = ellipse;
     if (inverts.invXRadiusSq === undefined ||
         inverts.invYRadiusSq === undefined ||
         inverts.invZRadiusSq === undefined) {
@@ -7,19 +13,25 @@ export default function pointInEllipse(ellipse, pointLPS, inverts = {}) {
         inverts.invYRadiusSq = yRadius !== 0 ? 1 / yRadius ** 2 : 0;
         inverts.invZRadiusSq = zRadius !== 0 ? 1 / zRadius ** 2 : 0;
     }
-    let inside = 0;
-    const dx = pointLPS[0] - center[0];
-    inside += dx * dx * inverts.invXRadiusSq;
-    if (inside > 1) {
-        return false;
-    }
-    const dy = pointLPS[1] - center[1];
-    inside += dy * dy * inverts.invYRadiusSq;
-    if (inside > 1) {
-        return false;
-    }
-    const dz = pointLPS[2] - center[2];
-    inside += dz * dz * inverts.invZRadiusSq;
-    return inside <= 1;
-}
+    const { invXRadiusSq, invYRadiusSq, invZRadiusSq } = inverts;
+    const { center } = ellipse;
+    const [centerL, centerP, centerS] = center;
+    inverts.precalculated = (pointLPS) => {
+        const dx = pointLPS[0] - centerL;
+        let inside = dx * dx * invXRadiusSq;
+        if (inside > 1) {
+            return false;
+        }
+        const dy = pointLPS[1] - centerP;
+        inside += dy * dy * invYRadiusSq;
+        if (inside > 1) {
+            return false;
+        }
+        const dz = pointLPS[2] - centerS;
+        inside += dz * dz * invZRadiusSq;
+        return inside <= 1;
+    };
+    return inverts;
+};
+export { precalculatePointInEllipse };
 //# sourceMappingURL=pointInEllipse.js.map

package/dist/esm/utilities/math/ellipse/pointInEllipse.js.map

@@ -1 +1 @@
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package/dist/esm/utilities/math/sphere/pointInSphere.js

@@ -1,8 +1,9 @@
 export default function pointInSphere(sphere, pointLPS) {
     const { center, radius } = sphere;
+    const radius2 = sphere.radius2 || radius * radius;
     return ((pointLPS[0] - center[0]) * (pointLPS[0] - center[0]) +
         (pointLPS[1] - center[1]) * (pointLPS[1] - center[1]) +
         (pointLPS[2] - center[2]) * (pointLPS[2] - center[2]) <=
-        radius ** 2);
+        radius2);
 }
 //# sourceMappingURL=pointInSphere.js.map

package/dist/esm/utilities/math/sphere/pointInSphere.js.map

@@ -1 +1 @@
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+{"version":3,"file":"pointInSphere.js","sourceRoot":"","sources":["../../../../../src/utilities/math/sphere/pointInSphere.ts"],"names":[],"mappings":"AAyBA,MAAM,CAAC,OAAO,UAAU,aAAa,CAAC,MAAc,EAAE,QAAc;IAClE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,GAAG,MAAM,CAAC;IAClC,MAAM,OAAO,GAAG,MAAM,CAAC,OAAO,IAAI,MAAM,GAAG,MAAM,CAAC;IAElD,OAAO,CACL,CAAC,QAAQ,CAAC,CAAC,CAAC,GAAG,MAAM,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAC,GAAG,MAAM,CAAC,CAAC,CAAC,CAAC;QACnD,CAAC,QAAQ,CAAC,CAAC,CAAC,GAAG,MAAM,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAC,GAAG,MAAM,CAAC,CAAC,CAAC,CAAC;QACrD,CAAC,QAAQ,CAAC,CAAC,CAAC,GAAG,MAAM,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAC,GAAG,MAAM,CAAC,CAAC,CAAC,CAAC;QACvD,OAAO,CACR,CAAC;AACJ,CAAC"}

package/dist/esm/utilities/segmentation/brushThresholdForToolGroup.js

@@ -2,15 +2,21 @@ import { getToolGroup } from '../../store/ToolGroupManager';
 import triggerAnnotationRenderForViewportIds from '../triggerAnnotationRenderForViewportIds';
 import { getRenderingEngine } from '@cornerstonejs/core';
 import getBrushToolInstances from './utilities';
-export function setBrushThresholdForToolGroup(toolGroupId, threshold) {
+export function setBrushThresholdForToolGroup(toolGroupId, threshold, otherArgs = { isDynamic: false }) {
     const toolGroup = getToolGroup(toolGroupId);
     if (toolGroup === undefined) {
         return;
     }
     const brushBasedToolInstances = getBrushToolInstances(toolGroupId);
+    const configuration = {
+        ...otherArgs,
+        ...(threshold !== undefined && { threshold }),
+    };
     brushBasedToolInstances.forEach((tool) => {
-        tool.configuration.strategySpecificConfiguration.THRESHOLD_INSIDE_CIRCLE.threshold =
-            threshold;
+        tool.configuration.strategySpecificConfiguration.THRESHOLD = {
+            ...tool.configuration.strategySpecificConfiguration.THRESHOLD,
+            ...configuration,
+        };
     });
     const viewportsInfo = toolGroup.getViewportsInfo();
     if (!viewportsInfo.length) {
@@ -35,7 +41,7 @@ export function getBrushThresholdForToolGroup(toolGroupId) {
     if (!brushToolInstance) {
         return;
     }
-    return brushToolInstance.configuration.strategySpecificConfiguration
-        .THRESHOLD_INSIDE_CIRCLE.threshold;
+    return brushToolInstance.configuration.strategySpecificConfiguration.THRESHOLD
+        .threshold;
 }
 //# sourceMappingURL=brushThresholdForToolGroup.js.map

package/dist/esm/utilities/segmentation/brushThresholdForToolGroup.js.map

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