npm - @cornerstonejs/tools - Versions diffs - 1.32.3 → 1.33.0 - Mend

@cornerstonejs/tools 1.32.3 → 1.33.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (206) hide show

package/dist/cjs/tools/annotation/EllipticalROITool.js.map CHANGED Viewed

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1	- 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package/dist/cjs/tools/displayTools/Labelmap/addLabelmapToElement.d.ts CHANGED Viewed

@@ -1,2 +1,3 @@
-declare function addLabelmapToElement(element: HTMLDivElement, volumeId: string, segmentationRepresentationUID: string): Promise<void>;
+import { LabelmapSegmentationData } from '../../../types/LabelmapTypes';
+declare function addLabelmapToElement(element: HTMLDivElement, labelMapData: LabelmapSegmentationData, segmentationRepresentationUID: string): Promise<void>;
 export default addLabelmapToElement;

package/dist/cjs/tools/displayTools/Labelmap/addLabelmapToElement.js CHANGED Viewed

@@ -10,7 +10,8 @@ var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, ge
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 const core_1 = require("@cornerstonejs/core");
-function addLabelmapToElement(element, volumeId, segmentationRepresentationUID) {
+const stackVolumeCheck_1 = require("../../segmentation/strategies/utils/stackVolumeCheck");
+function addLabelmapToElement(element, labelMapData, segmentationRepresentationUID) {
     return __awaiter(this, void 0, void 0, function* () {
         const enabledElement = (0, core_1.getEnabledElement)(element);
         const { renderingEngine, viewport } = enabledElement;
@@ -18,15 +19,27 @@ function addLabelmapToElement(element, volumeId, segmentationRepresentationUID)
         const visibility = true;
         const immediateRender = false;
         const suppressEvents = true;
-        const volumeInputs = [
-            {
-                volumeId,
-                actorUID: segmentationRepresentationUID,
-                visibility,
-                blendMode: core_1.Enums.BlendModes.MAXIMUM_INTENSITY_BLEND,
-            },
-        ];
-        yield (0, core_1.addVolumesToViewports)(renderingEngine, volumeInputs, [viewportId], immediateRender, suppressEvents);
+        if ((0, stackVolumeCheck_1.isVolumeSegmentation)(labelMapData)) {
+            const volumeInputs = [
+                {
+                    volumeId: labelMapData.volumeId,
+                    actorUID: segmentationRepresentationUID,
+                    visibility,
+                    blendMode: core_1.Enums.BlendModes.MAXIMUM_INTENSITY_BLEND,
+                },
+            ];
+            yield (0, core_1.addVolumesToViewports)(renderingEngine, volumeInputs, [viewportId], immediateRender, suppressEvents);
+        }
+        else {
+            const segmentationImageId = labelMapData.imageIdReferenceMap.get(viewport.getCurrentImageId());
+            const stackInputs = [
+                {
+                    imageId: segmentationImageId,
+                    actorUID: segmentationRepresentationUID,
+                },
+            ];
+            yield (0, core_1.addImageSlicesToViewports)(renderingEngine, stackInputs, [viewportId], immediateRender, suppressEvents);
+        }
     });
 }
 exports.default = addLabelmapToElement;

package/dist/cjs/tools/displayTools/Labelmap/addLabelmapToElement.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"addLabelmapToElement.js","sourceRoot":"","sources":["../../../../../src/tools/displayTools/Labelmap/addLabelmapToElement.ts"],"names":[],"mappings":";;;;;;;;;;;AAAA,8CAM6B;AAK7B,2FAA4F;AAW5F,SAAe,oBAAoB,CACjC,OAAuB,EACvB,YAAsC,EACtC,6BAAqC;;QAErC,MAAM,cAAc,GAAG,IAAA,wBAAiB,EAAC,OAAO,CAAC,CAAC;QAClD,MAAM,EAAE,eAAe,EAAE,QAAQ,EAAE,GAAG,cAAc,CAAC;QACrD,MAAM,EAAE,EAAE,EAAE,UAAU,EAAE,GAAG,QAAQ,CAAC;QAKpC,MAAM,UAAU,GAAG,IAAI,CAAC;QACxB,MAAM,eAAe,GAAG,KAAK,CAAC;QAC9B,MAAM,cAAc,GAAG,IAAI,CAAC;QAE5B,IAAI,IAAA,uCAAoB,EAAC,YAAY,CAAC,EAAE;YAKtC,MAAM,YAAY,GAAyB;gBACzC;oBACE,QAAQ,EAAE,YAAY,CAAC,QAAQ;oBAC/B,QAAQ,EAAE,6BAA6B;oBACvC,UAAU;oBACV,SAAS,EAAE,YAAK,CAAC,UAAU,CAAC,uBAAuB;iBACpD;aACF,CAAC;YAGF,MAAM,IAAA,4BAAqB,EACzB,eAAe,EACf,YAAY,EACZ,CAAC,UAAU,CAAC,EACZ,eAAe,EACf,cAAc,CACf,CAAC;SACH;aAAM;YAGL,MAAM,mBAAmB,GACvB,YACD,CAAC,mBAAmB,CAAC,GAAG,CAAC,QAAQ,CAAC,iBAAiB,EAAE,CAAC,CAAC;YAExD,MAAM,WAAW,GAAwB;gBACvC;oBACE,OAAO,EAAE,mBAAmB;oBAC5B,QAAQ,EAAE,6BAA6B;iBACxC;aACF,CAAC;YAGF,MAAM,IAAA,gCAAyB,EAC7B,eAAe,EACf,WAAW,EACX,CAAC,UAAU,CAAC,EACZ,eAAe,EACf,cAAc,CACf,CAAC;SACH;IACH,CAAC;CAAA;AAED,kBAAe,oBAAoB,CAAC"}

package/dist/cjs/tools/displayTools/Labelmap/labelmapDisplay.d.ts CHANGED Viewed

@@ -2,7 +2,7 @@ import { Types } from '@cornerstonejs/core';
 import { RepresentationPublicInput, SegmentationRepresentationConfig, ToolGroupSpecificRepresentation } from '../../../types/SegmentationStateTypes';
 declare function addSegmentationRepresentation(toolGroupId: string, representationInput: RepresentationPublicInput, toolGroupSpecificConfig?: SegmentationRepresentationConfig): Promise<string>;
 declare function removeSegmentationRepresentation(toolGroupId: string, segmentationRepresentationUID: string, renderImmediate?: boolean): void;
-declare function render(viewport: Types.IVolumeViewport, representation: ToolGroupSpecificRepresentation, toolGroupConfig: SegmentationRepresentationConfig): Promise<void>;
+declare function render(viewport: Types.IVolumeViewport | Types.IStackViewport, representation: ToolGroupSpecificRepresentation, toolGroupConfig: SegmentationRepresentationConfig): Promise<void>;
 declare const _default: {
     render: typeof render;
     addSegmentationRepresentation: typeof addSegmentationRepresentation;

package/dist/cjs/tools/displayTools/Labelmap/labelmapDisplay.js CHANGED Viewed

@@ -44,6 +44,7 @@ const SegmentationState = __importStar(require("../../../stateManagement/segment
 const ToolGroupManager_1 = require("../../../store/ToolGroupManager");
 const addLabelmapToElement_1 = __importDefault(require("./addLabelmapToElement"));
 const removeLabelmapFromElement_1 = __importDefault(require("./removeLabelmapFromElement"));
+const stackVolumeCheck_1 = require("../../segmentation/strategies/utils/stackVolumeCheck");
 const MAX_NUMBER_COLORS = 255;
 const labelMapConfigCache = new Map();
 function addSegmentationRepresentation(toolGroupId, representationInput, toolGroupSpecificConfig) {
@@ -118,19 +119,30 @@ function render(viewport, representation, toolGroupConfig) {
         const { colorLUTIndex, active, segmentationId, segmentationRepresentationUID, segmentsHidden, config: renderingConfig, } = representation;
         const segmentation = SegmentationState.getSegmentation(segmentationId);
         const labelmapData = segmentation.representationData[SegmentationRepresentations_1.default.Labelmap];
-        const { volumeId: labelmapUID } = labelmapData;
-        const labelmap = core_1.cache.getVolume(labelmapUID);
-        if (!labelmap) {
-            throw new Error(`No Labelmap found for volumeId: ${labelmapUID}`);
-        }
-        if (!isSameFrameOfReference(viewport, labelmapData === null || labelmapData === void 0 ? void 0 : labelmapData.referencedVolumeId)) {
-            return;
-        }
         let actorEntry = viewport.getActor(segmentationRepresentationUID);
-        if (!actorEntry) {
-            const segmentation = SegmentationState.getSegmentation(segmentationId);
-            const { volumeId } = segmentation.representationData[SegmentationRepresentations_1.default.Labelmap];
-            yield _addLabelmapToViewport(viewport, volumeId, segmentationRepresentationUID);
+        if ((0, stackVolumeCheck_1.isVolumeSegmentation)(labelmapData)) {
+            const { volumeId: labelmapUID } = labelmapData;
+            const labelmap = core_1.cache.getVolume(labelmapUID);
+            if (!labelmap) {
+                throw new Error(`No Labelmap found for volumeId: ${labelmapUID}`);
+            }
+            if (!isSameFrameOfReference(viewport, labelmapData === null || labelmapData === void 0 ? void 0 : labelmapData.referencedVolumeId)) {
+                return;
+            }
+            if (!actorEntry) {
+                yield _addLabelmapToViewport(viewport, labelmapData, segmentationRepresentationUID);
+            }
+            actorEntry = viewport.getActor(segmentationRepresentationUID);
+        }
+        else {
+            const imageId = viewport.getCurrentImageId();
+            const { imageIdReferenceMap } = labelmapData;
+            if (!imageIdReferenceMap.has(imageId)) {
+                return;
+            }
+            if (!actorEntry) {
+                yield _addLabelmapToViewport(viewport, labelmapData, segmentationRepresentationUID);
+            }
             actorEntry = viewport.getActor(segmentationRepresentationUID);
         }
         if (!actorEntry) {
@@ -147,7 +159,6 @@ function _setLabelmapColorAndOpacity(viewportId, actorEntry, cfun, ofun, colorLU
     const segmentationRepresentationLabelmapConfig = segmentationRepresentationSpecificConfig[SegmentationRepresentations_1.default.Labelmap];
     const colorLUT = SegmentationState.getColorLUT(colorLUTIndex);
     const numColors = Math.min(256, colorLUT.length);
-    const volumeActor = actorEntry.actor;
     const { uid: actorUID } = actorEntry;
     const { outlineWidth, renderOutline, outlineOpacity } = _getLabelmapConfig(toolGroupLabelmapConfig, segmentationRepresentationLabelmapConfig, isActiveLabelmap);
     for (let i = 0; i < numColors; i++) {
@@ -179,15 +190,18 @@ function _setLabelmapColorAndOpacity(viewportId, actorEntry, cfun, ofun, colorLU
             }
         }
     }
-    volumeActor.getProperty().setRGBTransferFunction(0, cfun);
+    const actor = actorEntry.actor;
+    actor.getProperty().setRGBTransferFunction(0, cfun);
     ofun.setClamping(false);
-    volumeActor.getProperty().setScalarOpacity(0, ofun);
-    volumeActor.getProperty().setInterpolationTypeToNearest();
-    volumeActor.getProperty().setUseLabelOutline(renderOutline);
-    volumeActor.getProperty().setLabelOutlineOpacity(outlineOpacity);
-    volumeActor.getProperty().setLabelOutlineThickness(outlineWidth);
+    actor.getProperty().setScalarOpacity(0, ofun);
+    actor.getProperty().setInterpolationTypeToNearest();
+    if (core_1.utilities.actorIsA(actorEntry, 'vtkVolume')) {
+        actor.getProperty().setUseLabelOutline(renderOutline);
+        actor.getProperty().setLabelOutlineOpacity(outlineOpacity);
+        actor.getProperty().setLabelOutlineThickness(outlineWidth);
+    }
     const visible = isActiveLabelmap || renderInactiveSegmentations;
-    volumeActor.setVisibility(visible);
+    actor.setVisibility(visible);
 }
 function _getLabelmapConfig(toolGroupLabelmapConfig, segmentationRepresentationLabelmapConfig, isActiveLabelmap, segmentsLabelmapConfig) {
     const segmentLabelmapConfig = segmentsLabelmapConfig || {};
@@ -265,9 +279,9 @@ function _removeLabelmapFromToolGroupViewports(toolGroupId, segmentationRepresen
         (0, removeLabelmapFromElement_1.default)(enabledElement.viewport.element, segmentationRepresentationUID);
     }
 }
-function _addLabelmapToViewport(viewport, volumeId, segmentationRepresentationUID) {
+function _addLabelmapToViewport(viewport, labelmapData, segmentationRepresentationUID) {
     return __awaiter(this, void 0, void 0, function* () {
-        yield (0, addLabelmapToElement_1.default)(viewport.element, volumeId, segmentationRepresentationUID);
+        yield (0, addLabelmapToElement_1.default)(viewport.element, labelmapData, segmentationRepresentationUID);
     });
 }
 exports.default = {

package/dist/cjs/tools/displayTools/Labelmap/labelmapDisplay.js.map CHANGED Viewed

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package/dist/cjs/tools/displayTools/Labelmap/validateRepresentationData.js CHANGED Viewed

@@ -7,12 +7,13 @@ function validate(segmentationInput) {
     }
     const representationData = segmentationInput.representation
         .data;
-    if (!representationData.volumeId) {
-        throw new Error('The segmentationInput.representationData.volumeId is undefined, please provide a valid representationData.volumeId');
+    if ('volumeId' in representationData) {
+        const cachedVolume = core_1.cache.getVolume(representationData.volumeId);
+        if (!cachedVolume) {
+            throw new Error(`volumeId of ${representationData.volumeId} not found in cache, you should load and cache volume before adding segmentation`);
+        }
     }
-    const cachedVolume = core_1.cache.getVolume(representationData.volumeId);
-    if (!cachedVolume) {
-        throw new Error(`volumeId of ${representationData.volumeId} not found in cache, you should load and cache volume before adding segmentation`);
+    else {
     }
 }
 exports.default = validate;

package/dist/cjs/tools/displayTools/Labelmap/validateRepresentationData.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"validateRepresentationData.js","sourceRoot":"","sources":["../../../../../src/tools/displayTools/Labelmap/validateRepresentationData.ts"],"names":[],"mappings":";;AACA,8CAA4C;~~AAG5C~~,SAAS,QAAQ,CAAC,iBAA0C;IAC1D,IAAI,CAAC,iBAAiB,CAAC,cAAc,CAAC,IAAI,EAAE;QAC1C,MAAM,IAAI,KAAK,CACb,4GAA4G,CAC7G,CAAC;KACH;IAED,MAAM,kBAAkB,GAAG,iBAAiB,CAAC,cAAc;SACxD,IAAgC,CAAC;IAEpC,IAAI,~~CAAC~~,kBAAkB,~~CAAC,QAAQ,~~EAAE;~~QAChC~~,MAAM,~~IAAI,KAAK,CACb,oHAAoH,CACrH,CAAC;KACH;IAED,MAAM,~~YAAY,GAAG,YAAK,CAAC,SAAS,~~CAAC~~,~~kBAAkB~~,CAAC,QAAQ,~~CAAC~~,CAAC;~~IAElE~~,IAAI,CAAC,YAAY,EAAE;~~QACjB~~,MAAM,IAAI,KAAK,CACb,~~eAAe~~,~~kBAAkB~~,CAAC,~~QAAQ~~,kFAAkF,~~CAC7H~~,CAAC;~~KACH~~;AACH,CAAC;AAED,kBAAe,QAAQ,CAAC"}
1	+ {"version":3,"file":"validateRepresentationData.js","sourceRoot":"","sources":["../../../../../src/tools/displayTools/Labelmap/validateRepresentationData.ts"],"names":[],"mappings":";;AACA,8CAA4C;AAM5C,SAAS,QAAQ,CAAC,iBAA0C;IAC1D,IAAI,CAAC,iBAAiB,CAAC,cAAc,CAAC,IAAI,EAAE;QAC1C,MAAM,IAAI,KAAK,CACb,4GAA4G,CAC7G,CAAC;KACH;IAED,MAAM,kBAAkB,GAAG,iBAAiB,CAAC,cAAc;SACxD,IAAgC,CAAC;IAEpC,IAAI,UAAU,IAAI,kBAAkB,EAAE;QAEpC,MAAM,YAAY,GAAG,YAAK,CAAC,SAAS,CACjC,kBAAqD,CAAC,QAAQ,CAChE,CAAC;QAEF,IAAI,CAAC,YAAY,EAAE;YACjB,MAAM,IAAI,KAAK,CACb,eACG,kBAAqD,CAAC,QACzD,kFAAkF,CACnF,CAAC;SACH;KACF;SAAM;KAEN;AACH,CAAC;AAED,kBAAe,QAAQ,CAAC"}

package/dist/cjs/tools/segmentation/BrushTool.js CHANGED Viewed

@@ -15,6 +15,7 @@ const drawingSvg_1 = require("../../drawingSvg");
 const elementCursor_1 = require("../../cursors/elementCursor");
 const triggerAnnotationRenderForViewportIds_1 = __importDefault(require("../../utilities/triggerAnnotationRenderForViewportIds"));
 const segmentation_1 = require("../../stateManagement/segmentation");
+const stackVolumeCheck_1 = require("./strategies/utils/stackVolumeCheck");
 class BrushTool extends base_1.BaseTool {
     constructor(toolProps = {}, defaultToolProps = {
         supportedInteractionTypes: ['Mouse', 'Touch'],
@@ -52,28 +53,46 @@ class BrushTool extends base_1.BaseTool {
             const { element } = eventData;
             const enabledElement = (0, core_1.getEnabledElement)(element);
             const { viewport, renderingEngine } = enabledElement;
-            if (viewport instanceof core_1.StackViewport) {
-                throw new Error('Not implemented yet');
-            }
             const toolGroupId = this.toolGroupId;
             const activeSegmentationRepresentation = segmentation_1.activeSegmentation.getActiveSegmentationRepresentation(toolGroupId);
             if (!activeSegmentationRepresentation) {
                 throw new Error('No active segmentation detected, create one before using the brush tool');
             }
-            const { segmentationId, type } = activeSegmentationRepresentation;
+            const { segmentationId, type, segmentationRepresentationUID } = activeSegmentationRepresentation;
+            if (type === enums_1.SegmentationRepresentations.Contour) {
+                throw new Error('Not implemented yet');
+            }
             const segmentsLocked = segmentation_1.segmentLocking.getLockedSegments(segmentationId);
             const { representationData } = segmentation_1.state.getSegmentation(segmentationId);
-            const { volumeId } = representationData[type];
-            const segmentation = core_1.cache.getVolume(volumeId);
-            const actors = viewport.getActors();
-            const firstVolumeActorUID = actors[0].uid;
-            const imageVolume = core_1.cache.getVolume(firstVolumeActorUID);
+            const labelmapData = representationData[enums_1.SegmentationRepresentations.Labelmap];
             const viewportIdsToRender = [viewport.id];
-            this._editData = {
-                segmentation,
-                imageVolume,
-                segmentsLocked,
-            };
+            if ((0, stackVolumeCheck_1.isVolumeSegmentation)(labelmapData)) {
+                const { volumeId } = representationData[type];
+                const actors = viewport.getActors();
+                const firstVolumeActorUID = actors[0].uid;
+                this._editData = {
+                    volumeId,
+                    referencedVolumeId: firstVolumeActorUID,
+                    segmentsLocked,
+                    segmentationRepresentationUID,
+                };
+            }
+            else {
+                const { imageIdReferenceMap } = labelmapData;
+                const currentImageId = viewport.getCurrentImageId();
+                if (!imageIdReferenceMap.get(currentImageId)) {
+                    return;
+                }
+                if (this.configuration.activeStrategy.includes('SPHERE')) {
+                    console.warn('Sphere manipulation is not supported for this stack of images yet');
+                    return;
+                }
+                this._editData = {
+                    imageIdReferenceMap,
+                    segmentsLocked,
+                    segmentationRepresentationUID,
+                };
+            }
             this._activateDraw(element);
             (0, elementCursor_1.hideElementCursor)(element);
             evt.preventDefault();
@@ -90,56 +109,32 @@ class BrushTool extends base_1.BaseTool {
             const { element } = eventData;
             const enabledElement = (0, core_1.getEnabledElement)(element);
             const { renderingEngine } = enabledElement;
-            const { imageVolume, segmentation, segmentsLocked } = this._editData;
             this.updateCursor(evt);
             const { segmentIndex, segmentationId, segmentationRepresentationUID, brushCursor, viewportIdsToRender, } = this._hoverData;
             const { data } = brushCursor;
             const { viewPlaneNormal, viewUp } = brushCursor.metadata;
             (0, triggerAnnotationRenderForViewportIds_1.default)(renderingEngine, viewportIdsToRender);
-            const operationData = {
-                points: data.handles.points,
-                volume: segmentation,
-                imageVolume,
-                segmentIndex,
-                segmentsLocked,
-                viewPlaneNormal,
-                toolGroupId: this.toolGroupId,
-                segmentationId,
+            const operationData = Object.assign(Object.assign({}, this._editData), { points: data.handles.points, segmentIndex,
+                viewPlaneNormal, toolGroupId: this.toolGroupId, segmentationId,
                 segmentationRepresentationUID,
-                viewUp,
-                strategySpecificConfiguration: this.configuration.strategySpecificConfiguration,
-            };
+                viewUp, strategySpecificConfiguration: this.configuration.strategySpecificConfiguration });
             this.applyActiveStrategy(enabledElement, operationData);
         };
         this._endCallback = (evt) => {
             const eventData = evt.detail;
             const { element } = eventData;
-            const { imageVolume, segmentation, segmentsLocked } = this._editData;
             const { segmentIndex, segmentationId, segmentationRepresentationUID, brushCursor, } = this._hoverData;
             const { data } = brushCursor;
             const { viewPlaneNormal, viewUp } = brushCursor.metadata;
             this._deactivateDraw(element);
             (0, elementCursor_1.resetElementCursor)(element);
             const enabledElement = (0, core_1.getEnabledElement)(element);
-            const { viewport } = enabledElement;
-            this._editData = null;
             this.updateCursor(evt);
-            if (viewport instanceof core_1.StackViewport) {
-                throw new Error('Not implemented yet');
-            }
-            const operationData = {
-                points: data.handles.points,
-                volume: segmentation,
-                imageVolume,
-                segmentIndex,
-                segmentsLocked,
-                viewPlaneNormal,
-                toolGroupId: this.toolGroupId,
-                segmentationId,
+            const operationData = Object.assign(Object.assign({ points: data.handles.points }, this._editData), { segmentIndex,
+                viewPlaneNormal, toolGroupId: this.toolGroupId, segmentationId,
                 segmentationRepresentationUID,
-                viewUp,
-                strategySpecificConfiguration: this.configuration.strategySpecificConfiguration,
-            };
+                viewUp, strategySpecificConfiguration: this.configuration.strategySpecificConfiguration });
+            this._editData = null;
             this.applyActiveStrategy(enabledElement, operationData);
         };
         this._activateDraw = (element) => {

package/dist/cjs/tools/segmentation/BrushTool.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/cjs/tools/segmentation/CircleScissorsTool.d.ts CHANGED Viewed

@@ -5,9 +5,10 @@ declare class CircleScissorsTool extends BaseTool {
     static toolName: any;
     editData: {
         annotation: any;
-        segmentation: any;
         segmentIndex: number;
-        segmentationId: string;
+        volumeId: string;
+        referencedVolumeId: string;
+        imageIdReferenceMap: Map<string, string>;
         segmentsLocked: number[];
         segmentColor: [number, number, number, number];
         viewportIdsToRender: string[];
@@ -16,6 +17,7 @@ declare class CircleScissorsTool extends BaseTool {
         newAnnotation?: boolean;
         hasMoved?: boolean;
         centerCanvas?: Array<number>;
+        segmentationRepresentationUID?: string;
     } | null;
     isDrawing: boolean;
     isHandleOutsideImage: boolean;