@cornerstonejs/tools 1.32.2 → 1.33.0

package/dist/esm/tools/annotation/EllipticalROITool.js.map

@@ -1 +1 @@
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package/dist/esm/tools/displayTools/Labelmap/addLabelmapToElement.js

@@ -1,20 +1,33 @@
-import { getEnabledElement, addVolumesToViewports, Enums, } from '@cornerstonejs/core';
-async function addLabelmapToElement(element, volumeId, segmentationRepresentationUID) {
+import { getEnabledElement, addVolumesToViewports, addImageSlicesToViewports, Enums, } from '@cornerstonejs/core';
+import { isVolumeSegmentation } from '../../segmentation/strategies/utils/stackVolumeCheck';
+async function addLabelmapToElement(element, labelMapData, segmentationRepresentationUID) {
     const enabledElement = getEnabledElement(element);
     const { renderingEngine, viewport } = enabledElement;
     const { id: viewportId } = viewport;
     const visibility = true;
     const immediateRender = false;
     const suppressEvents = true;
-    const volumeInputs = [
-        {
-            volumeId,
-            actorUID: segmentationRepresentationUID,
-            visibility,
-            blendMode: Enums.BlendModes.MAXIMUM_INTENSITY_BLEND,
-        },
-    ];
-    await addVolumesToViewports(renderingEngine, volumeInputs, [viewportId], immediateRender, suppressEvents);
+    if (isVolumeSegmentation(labelMapData)) {
+        const volumeInputs = [
+            {
+                volumeId: labelMapData.volumeId,
+                actorUID: segmentationRepresentationUID,
+                visibility,
+                blendMode: Enums.BlendModes.MAXIMUM_INTENSITY_BLEND,
+            },
+        ];
+        await addVolumesToViewports(renderingEngine, volumeInputs, [viewportId], immediateRender, suppressEvents);
+    }
+    else {
+        const segmentationImageId = labelMapData.imageIdReferenceMap.get(viewport.getCurrentImageId());
+        const stackInputs = [
+            {
+                imageId: segmentationImageId,
+                actorUID: segmentationRepresentationUID,
+            },
+        ];
+        await addImageSlicesToViewports(renderingEngine, stackInputs, [viewportId], immediateRender, suppressEvents);
+    }
 }
 export default addLabelmapToElement;
 //# sourceMappingURL=addLabelmapToElement.js.map

package/dist/esm/tools/displayTools/Labelmap/addLabelmapToElement.js.map

@@ -1 +1 @@
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+{"version":3,"file":"addLabelmapToElement.js","sourceRoot":"","sources":["../../../../../src/tools/displayTools/Labelmap/addLabelmapToElement.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,iBAAiB,EACjB,qBAAqB,EACrB,yBAAyB,EAEzB,KAAK,GACN,MAAM,qBAAqB,CAAC;AAK7B,OAAO,EAAE,oBAAoB,EAAE,MAAM,sDAAsD,CAAC;AAW5F,KAAK,UAAU,oBAAoB,CACjC,OAAuB,EACvB,YAAsC,EACtC,6BAAqC;IAErC,MAAM,cAAc,GAAG,iBAAiB,CAAC,OAAO,CAAC,CAAC;IAClD,MAAM,EAAE,eAAe,EAAE,QAAQ,EAAE,GAAG,cAAc,CAAC;IACrD,MAAM,EAAE,EAAE,EAAE,UAAU,EAAE,GAAG,QAAQ,CAAC;IAKpC,MAAM,UAAU,GAAG,IAAI,CAAC;IACxB,MAAM,eAAe,GAAG,KAAK,CAAC;IAC9B,MAAM,cAAc,GAAG,IAAI,CAAC;IAE5B,IAAI,oBAAoB,CAAC,YAAY,CAAC,EAAE;QAKtC,MAAM,YAAY,GAAyB;YACzC;gBACE,QAAQ,EAAE,YAAY,CAAC,QAAQ;gBAC/B,QAAQ,EAAE,6BAA6B;gBACvC,UAAU;gBACV,SAAS,EAAE,KAAK,CAAC,UAAU,CAAC,uBAAuB;aACpD;SACF,CAAC;QAGF,MAAM,qBAAqB,CACzB,eAAe,EACf,YAAY,EACZ,CAAC,UAAU,CAAC,EACZ,eAAe,EACf,cAAc,CACf,CAAC;KACH;SAAM;QAGL,MAAM,mBAAmB,GACvB,YACD,CAAC,mBAAmB,CAAC,GAAG,CAAC,QAAQ,CAAC,iBAAiB,EAAE,CAAC,CAAC;QAExD,MAAM,WAAW,GAAwB;YACvC;gBACE,OAAO,EAAE,mBAAmB;gBAC5B,QAAQ,EAAE,6BAA6B;aACxC;SACF,CAAC;QAGF,MAAM,yBAAyB,CAC7B,eAAe,EACf,WAAW,EACX,CAAC,UAAU,CAAC,EACZ,eAAe,EACf,cAAc,CACf,CAAC;KACH;AACH,CAAC;AAED,eAAe,oBAAoB,CAAC"}

package/dist/esm/tools/displayTools/Labelmap/labelmapDisplay.js

@@ -7,6 +7,7 @@ import * as SegmentationState from '../../../stateManagement/segmentation/segmen
 import { getToolGroup } from '../../../store/ToolGroupManager';
 import addLabelmapToElement from './addLabelmapToElement';
 import removeLabelmapFromElement from './removeLabelmapFromElement';
+import { isVolumeSegmentation } from '../../segmentation/strategies/utils/stackVolumeCheck';
 const MAX_NUMBER_COLORS = 255;
 const labelMapConfigCache = new Map();
 async function addSegmentationRepresentation(toolGroupId, representationInput, toolGroupSpecificConfig) {
@@ -80,19 +81,30 @@ async function render(viewport, representation, toolGroupConfig) {
     const { colorLUTIndex, active, segmentationId, segmentationRepresentationUID, segmentsHidden, config: renderingConfig, } = representation;
     const segmentation = SegmentationState.getSegmentation(segmentationId);
     const labelmapData = segmentation.representationData[Representations.Labelmap];
-    const { volumeId: labelmapUID } = labelmapData;
-    const labelmap = cache.getVolume(labelmapUID);
-    if (!labelmap) {
-        throw new Error(`No Labelmap found for volumeId: ${labelmapUID}`);
-    }
-    if (!isSameFrameOfReference(viewport, labelmapData?.referencedVolumeId)) {
-        return;
-    }
     let actorEntry = viewport.getActor(segmentationRepresentationUID);
-    if (!actorEntry) {
-        const segmentation = SegmentationState.getSegmentation(segmentationId);
-        const { volumeId } = segmentation.representationData[Representations.Labelmap];
-        await _addLabelmapToViewport(viewport, volumeId, segmentationRepresentationUID);
+    if (isVolumeSegmentation(labelmapData)) {
+        const { volumeId: labelmapUID } = labelmapData;
+        const labelmap = cache.getVolume(labelmapUID);
+        if (!labelmap) {
+            throw new Error(`No Labelmap found for volumeId: ${labelmapUID}`);
+        }
+        if (!isSameFrameOfReference(viewport, labelmapData?.referencedVolumeId)) {
+            return;
+        }
+        if (!actorEntry) {
+            await _addLabelmapToViewport(viewport, labelmapData, segmentationRepresentationUID);
+        }
+        actorEntry = viewport.getActor(segmentationRepresentationUID);
+    }
+    else {
+        const imageId = viewport.getCurrentImageId();
+        const { imageIdReferenceMap } = labelmapData;
+        if (!imageIdReferenceMap.has(imageId)) {
+            return;
+        }
+        if (!actorEntry) {
+            await _addLabelmapToViewport(viewport, labelmapData, segmentationRepresentationUID);
+        }
         actorEntry = viewport.getActor(segmentationRepresentationUID);
     }
     if (!actorEntry) {
@@ -107,7 +119,6 @@ function _setLabelmapColorAndOpacity(viewportId, actorEntry, cfun, ofun, colorLU
     const segmentationRepresentationLabelmapConfig = segmentationRepresentationSpecificConfig[Representations.Labelmap];
     const colorLUT = SegmentationState.getColorLUT(colorLUTIndex);
     const numColors = Math.min(256, colorLUT.length);
-    const volumeActor = actorEntry.actor;
     const { uid: actorUID } = actorEntry;
     const { outlineWidth, renderOutline, outlineOpacity } = _getLabelmapConfig(toolGroupLabelmapConfig, segmentationRepresentationLabelmapConfig, isActiveLabelmap);
     for (let i = 0; i < numColors; i++) {
@@ -139,15 +150,18 @@ function _setLabelmapColorAndOpacity(viewportId, actorEntry, cfun, ofun, colorLU
             }
         }
     }
-    volumeActor.getProperty().setRGBTransferFunction(0, cfun);
+    const actor = actorEntry.actor;
+    actor.getProperty().setRGBTransferFunction(0, cfun);
     ofun.setClamping(false);
-    volumeActor.getProperty().setScalarOpacity(0, ofun);
-    volumeActor.getProperty().setInterpolationTypeToNearest();
-    volumeActor.getProperty().setUseLabelOutline(renderOutline);
-    volumeActor.getProperty().setLabelOutlineOpacity(outlineOpacity);
-    volumeActor.getProperty().setLabelOutlineThickness(outlineWidth);
+    actor.getProperty().setScalarOpacity(0, ofun);
+    actor.getProperty().setInterpolationTypeToNearest();
+    if (utilities.actorIsA(actorEntry, 'vtkVolume')) {
+        actor.getProperty().setUseLabelOutline(renderOutline);
+        actor.getProperty().setLabelOutlineOpacity(outlineOpacity);
+        actor.getProperty().setLabelOutlineThickness(outlineWidth);
+    }
     const visible = isActiveLabelmap || renderInactiveSegmentations;
-    volumeActor.setVisibility(visible);
+    actor.setVisibility(visible);
 }
 function _getLabelmapConfig(toolGroupLabelmapConfig, segmentationRepresentationLabelmapConfig, isActiveLabelmap, segmentsLabelmapConfig) {
     const segmentLabelmapConfig = segmentsLabelmapConfig || {};
@@ -229,8 +243,8 @@ function _removeLabelmapFromToolGroupViewports(toolGroupId, segmentationRepresen
         removeLabelmapFromElement(enabledElement.viewport.element, segmentationRepresentationUID);
     }
 }
-async function _addLabelmapToViewport(viewport, volumeId, segmentationRepresentationUID) {
-    await addLabelmapToElement(viewport.element, volumeId, segmentationRepresentationUID);
+async function _addLabelmapToViewport(viewport, labelmapData, segmentationRepresentationUID) {
+    await addLabelmapToElement(viewport.element, labelmapData, segmentationRepresentationUID);
 }
 export default {
     render,

package/dist/esm/tools/displayTools/Labelmap/labelmapDisplay.js.map

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package/dist/esm/tools/displayTools/Labelmap/validateRepresentationData.js

@@ -5,12 +5,13 @@ function validate(segmentationInput) {
     }
     const representationData = segmentationInput.representation
         .data;
-    if (!representationData.volumeId) {
-        throw new Error('The segmentationInput.representationData.volumeId is undefined, please provide a valid representationData.volumeId');
+    if ('volumeId' in representationData) {
+        const cachedVolume = cache.getVolume(representationData.volumeId);
+        if (!cachedVolume) {
+            throw new Error(`volumeId of ${representationData.volumeId} not found in cache, you should load and cache volume before adding segmentation`);
+        }
     }
-    const cachedVolume = cache.getVolume(representationData.volumeId);
-    if (!cachedVolume) {
-        throw new Error(`volumeId of ${representationData.volumeId} not found in cache, you should load and cache volume before adding segmentation`);
+    else {
     }
 }
 export default validate;

package/dist/esm/tools/displayTools/Labelmap/validateRepresentationData.js.map

@@ -1 +1 @@
-{"version":3,"file":"validateRepresentationData.js","sourceRoot":"","sources":["../../../../../src/tools/displayTools/Labelmap/validateRepresentationData.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,KAAK,EAAE,MAAM,qBAAqB,CAAC;AAG5C,SAAS,QAAQ,CAAC,iBAA0C;IAC1D,IAAI,CAAC,iBAAiB,CAAC,cAAc,CAAC,IAAI,EAAE;QAC1C,MAAM,IAAI,KAAK,CACb,4GAA4G,CAC7G,CAAC;KACH;IAED,MAAM,kBAAkB,GAAG,iBAAiB,CAAC,cAAc;SACxD,IAAgC,CAAC;IAEpC,IAAI,CAAC,kBAAkB,CAAC,QAAQ,EAAE;QAChC,MAAM,IAAI,KAAK,CACb,oHAAoH,CACrH,CAAC;KACH;IAED,MAAM,YAAY,GAAG,KAAK,CAAC,SAAS,CAAC,kBAAkB,CAAC,QAAQ,CAAC,CAAC;IAElE,IAAI,CAAC,YAAY,EAAE;QACjB,MAAM,IAAI,KAAK,CACb,eAAe,kBAAkB,CAAC,QAAQ,kFAAkF,CAC7H,CAAC;KACH;AACH,CAAC;AAED,eAAe,QAAQ,CAAC"}
+{"version":3,"file":"validateRepresentationData.js","sourceRoot":"","sources":["../../../../../src/tools/displayTools/Labelmap/validateRepresentationData.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,KAAK,EAAE,MAAM,qBAAqB,CAAC;AAM5C,SAAS,QAAQ,CAAC,iBAA0C;IAC1D,IAAI,CAAC,iBAAiB,CAAC,cAAc,CAAC,IAAI,EAAE;QAC1C,MAAM,IAAI,KAAK,CACb,4GAA4G,CAC7G,CAAC;KACH;IAED,MAAM,kBAAkB,GAAG,iBAAiB,CAAC,cAAc;SACxD,IAAgC,CAAC;IAEpC,IAAI,UAAU,IAAI,kBAAkB,EAAE;QAEpC,MAAM,YAAY,GAAG,KAAK,CAAC,SAAS,CACjC,kBAAqD,CAAC,QAAQ,CAChE,CAAC;QAEF,IAAI,CAAC,YAAY,EAAE;YACjB,MAAM,IAAI,KAAK,CACb,eACG,kBAAqD,CAAC,QACzD,kFAAkF,CACnF,CAAC;SACH;KACF;SAAM;KAEN;AACH,CAAC;AAED,eAAe,QAAQ,CAAC"}

package/dist/esm/tools/segmentation/BrushTool.js

@@ -1,15 +1,16 @@
-import { cache, getEnabledElement, StackViewport } from '@cornerstonejs/core';
+import { getEnabledElement } from '@cornerstonejs/core';
 import { vec3 } from 'gl-matrix';
 import { BaseTool } from '../base';
 import { fillInsideSphere, thresholdInsideSphere, } from './strategies/fillSphere';
 import { eraseInsideSphere } from './strategies/eraseSphere';
 import { thresholdInsideCircle, fillInsideCircle, } from './strategies/fillCircle';
 import { eraseInsideCircle } from './strategies/eraseCircle';
-import { Events, ToolModes } from '../../enums';
+import { Events, ToolModes, SegmentationRepresentations } from '../../enums';
 import { drawCircle as drawCircleSvg } from '../../drawingSvg';
 import { resetElementCursor, hideElementCursor, } from '../../cursors/elementCursor';
 import triggerAnnotationRenderForViewportUIDs from '../../utilities/triggerAnnotationRenderForViewportIds';
 import { config as segmentationConfig, segmentLocking, segmentIndex as segmentIndexController, state as segmentationState, activeSegmentation, } from '../../stateManagement/segmentation';
+import { isVolumeSegmentation } from './strategies/utils/stackVolumeCheck';
 class BrushTool extends BaseTool {
     constructor(toolProps = {}, defaultToolProps = {
         supportedInteractionTypes: ['Mouse', 'Touch'],
@@ -47,28 +48,46 @@ class BrushTool extends BaseTool {
             const { element } = eventData;
             const enabledElement = getEnabledElement(element);
             const { viewport, renderingEngine } = enabledElement;
-            if (viewport instanceof StackViewport) {
-                throw new Error('Not implemented yet');
-            }
             const toolGroupId = this.toolGroupId;
             const activeSegmentationRepresentation = activeSegmentation.getActiveSegmentationRepresentation(toolGroupId);
             if (!activeSegmentationRepresentation) {
                 throw new Error('No active segmentation detected, create one before using the brush tool');
             }
-            const { segmentationId, type } = activeSegmentationRepresentation;
+            const { segmentationId, type, segmentationRepresentationUID } = activeSegmentationRepresentation;
+            if (type === SegmentationRepresentations.Contour) {
+                throw new Error('Not implemented yet');
+            }
             const segmentsLocked = segmentLocking.getLockedSegments(segmentationId);
             const { representationData } = segmentationState.getSegmentation(segmentationId);
-            const { volumeId } = representationData[type];
-            const segmentation = cache.getVolume(volumeId);
-            const actors = viewport.getActors();
-            const firstVolumeActorUID = actors[0].uid;
-            const imageVolume = cache.getVolume(firstVolumeActorUID);
+            const labelmapData = representationData[SegmentationRepresentations.Labelmap];
             const viewportIdsToRender = [viewport.id];
-            this._editData = {
-                segmentation,
-                imageVolume,
-                segmentsLocked,
-            };
+            if (isVolumeSegmentation(labelmapData)) {
+                const { volumeId } = representationData[type];
+                const actors = viewport.getActors();
+                const firstVolumeActorUID = actors[0].uid;
+                this._editData = {
+                    volumeId,
+                    referencedVolumeId: firstVolumeActorUID,
+                    segmentsLocked,
+                    segmentationRepresentationUID,
+                };
+            }
+            else {
+                const { imageIdReferenceMap } = labelmapData;
+                const currentImageId = viewport.getCurrentImageId();
+                if (!imageIdReferenceMap.get(currentImageId)) {
+                    return;
+                }
+                if (this.configuration.activeStrategy.includes('SPHERE')) {
+                    console.warn('Sphere manipulation is not supported for this stack of images yet');
+                    return;
+                }
+                this._editData = {
+                    imageIdReferenceMap,
+                    segmentsLocked,
+                    segmentationRepresentationUID,
+                };
+            }
             this._activateDraw(element);
             hideElementCursor(element);
             evt.preventDefault();
@@ -85,18 +104,15 @@ class BrushTool extends BaseTool {
             const { element } = eventData;
             const enabledElement = getEnabledElement(element);
             const { renderingEngine } = enabledElement;
-            const { imageVolume, segmentation, segmentsLocked } = this._editData;
             this.updateCursor(evt);
             const { segmentIndex, segmentationId, segmentationRepresentationUID, brushCursor, viewportIdsToRender, } = this._hoverData;
             const { data } = brushCursor;
             const { viewPlaneNormal, viewUp } = brushCursor.metadata;
             triggerAnnotationRenderForViewportUIDs(renderingEngine, viewportIdsToRender);
             const operationData = {
+                ...this._editData,
                 points: data.handles.points,
-                volume: segmentation,
-                imageVolume,
                 segmentIndex,
-                segmentsLocked,
                 viewPlaneNormal,
                 toolGroupId: this.toolGroupId,
                 segmentationId,
@@ -109,25 +125,17 @@ class BrushTool extends BaseTool {
         this._endCallback = (evt) => {
             const eventData = evt.detail;
             const { element } = eventData;
-            const { imageVolume, segmentation, segmentsLocked } = this._editData;
             const { segmentIndex, segmentationId, segmentationRepresentationUID, brushCursor, } = this._hoverData;
             const { data } = brushCursor;
             const { viewPlaneNormal, viewUp } = brushCursor.metadata;
             this._deactivateDraw(element);
             resetElementCursor(element);
             const enabledElement = getEnabledElement(element);
-            const { viewport } = enabledElement;
-            this._editData = null;
             this.updateCursor(evt);
-            if (viewport instanceof StackViewport) {
-                throw new Error('Not implemented yet');
-            }
             const operationData = {
                 points: data.handles.points,
-                volume: segmentation,
-                imageVolume,
+                ...this._editData,
                 segmentIndex,
-                segmentsLocked,
                 viewPlaneNormal,
                 toolGroupId: this.toolGroupId,
                 segmentationId,
@@ -135,6 +143,7 @@ class BrushTool extends BaseTool {
                 viewUp,
                 strategySpecificConfiguration: this.configuration.strategySpecificConfiguration,
             };
+            this._editData = null;
             this.applyActiveStrategy(enabledElement, operationData);
         };
         this._activateDraw = (element) => {

package/dist/esm/tools/segmentation/BrushTool.js.map

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