@cornerstonejs/tools 0.66.7 → 0.67.1

package/dist/esm/tools/annotation/PlanarFreehandROITool.js

@@ -5,6 +5,7 @@ import { AnnotationTool } from '../base';
 import { addAnnotation, getAnnotations, } from '../../stateManagement/annotation/annotationState';
 import { polyline } from '../../utilities/math';
 import { filterAnnotationsForDisplay } from '../../utilities/planar';
+import throttle from '../../utilities/throttle';
 import { getViewportIdsWithToolToRender } from '../../utilities/viewportFilters';
 import triggerAnnotationRenderForViewportIds from '../../utilities/triggerAnnotationRenderForViewportIds';
 import registerDrawLoop from './planarFreehandROITool/drawLoop';
@@ -13,6 +14,12 @@ import registerClosedContourEditLoop from './planarFreehandROITool/closedContour
 import registerOpenContourEditLoop from './planarFreehandROITool/openContourEditLoop';
 import registerOpenContourEndEditLoop from './planarFreehandROITool/openContourEndEditLoop';
 import registerRenderMethods from './planarFreehandROITool/renderMethods';
+import { drawLinkedTextBox } from '../../drawingSvg';
+import { getTextBoxCoordsCanvas } from '../../utilities/drawing';
+import { getIntersectionCoordinatesWithPolyline } from '../../utilities/math/polyline/getIntersectionWithPolyline';
+import pointInShapeCallback from '../../utilities/pointInShapeCallback';
+import { isViewportPreScaled } from '../../utilities/viewport/isViewportPreScaled';
+import { getModalityUnit } from '../../utilities/getModalityUnit';
 const { pointCanProjectOnLine } = polyline;
 const { EPSILON } = CONSTANTS;
 const PARALLEL_THRESHOLD = 1 - EPSILON;
@@ -36,6 +43,7 @@ class PlanarFreehandROITool extends AnnotationTool {
                 knotsRatioPercentageOnAdd: 40,
                 knotsRatioPercentageOnEdit: 40,
             },
+            calculateStats: false,
         },
     }) {
         super(toolProps, defaultToolProps);
@@ -80,6 +88,7 @@ class PlanarFreehandROITool extends AnnotationTool {
                     },
                     polyline: [[...worldPos]],
                     label: '',
+                    cachedStats: {},
                 },
             };
             addAnnotation(annotation, element);
@@ -88,11 +97,11 @@ class PlanarFreehandROITool extends AnnotationTool {
             triggerAnnotationRenderForViewportIds(renderingEngine, viewportIdsToRender);
             return annotation;
         };
-        this.handleSelectedCallback = (evt, annotation) => {
+        this.handleSelectedCallback = (evt, annotation, handle) => {
             const eventDetail = evt.detail;
             const { element } = eventDetail;
             const viewportIdsToRender = getViewportIdsWithToolToRender(element, this.getToolName());
-            this.activateOpenContourEndEdit(evt, annotation, viewportIdsToRender);
+            this.activateOpenContourEndEdit(evt, annotation, viewportIdsToRender, handle);
         };
         this.toolSelectedCallback = (evt, annotation) => {
             const eventDetail = evt.detail;
@@ -162,9 +171,10 @@ class PlanarFreehandROITool extends AnnotationTool {
             triggerEvent(eventTarget, eventType, eventDetail);
         };
         this.renderAnnotation = (enabledElement, svgDrawingHelper) => {
-            const renderStatus = false;
-            const { viewport } = enabledElement;
+            let renderStatus = false;
+            const { viewport, renderingEngine } = enabledElement;
             const { element } = viewport;
+            const targetId = this.getTargetId(viewport);
             let annotations = (getAnnotations(this.getToolName(), element));
             if (!annotations?.length) {
                 return renderStatus;
@@ -178,33 +188,219 @@ class PlanarFreehandROITool extends AnnotationTool {
             const isEditingClosed = this.isEditingClosed;
             if (!(isDrawing || isEditingOpen || isEditingClosed)) {
                 annotations.forEach((annotation) => {
-                    if (!annotation)
-                        return;
                     this.renderContour(enabledElement, svgDrawingHelper, annotation);
                 });
-                return renderStatus;
             }
-            const activeAnnotationUID = this.commonData.annotation.annotationUID;
-            annotations.forEach((annotation) => {
-                if (annotation.annotationUID === activeAnnotationUID) {
-                    if (isDrawing) {
-                        this.renderContourBeingDrawn(enabledElement, svgDrawingHelper, annotation);
+            else {
+                const activeAnnotationUID = this.commonData.annotation.annotationUID;
+                annotations.forEach((annotation) => {
+                    if (annotation.annotationUID === activeAnnotationUID) {
+                        if (isDrawing) {
+                            this.renderContourBeingDrawn(enabledElement, svgDrawingHelper, annotation);
+                        }
+                        else if (isEditingClosed) {
+                            this.renderClosedContourBeingEdited(enabledElement, svgDrawingHelper, annotation);
+                        }
+                        else if (isEditingOpen) {
+                            this.renderOpenContourBeingEdited(enabledElement, svgDrawingHelper, annotation);
+                        }
+                        else {
+                            throw new Error(`Unknown ${this.getToolName()} annotation rendering state`);
+                        }
                     }
-                    else if (isEditingClosed) {
-                        this.renderClosedContourBeingEdited(enabledElement, svgDrawingHelper, annotation);
+                    else {
+                        this.renderContour(enabledElement, svgDrawingHelper, annotation);
                     }
-                    else if (isEditingOpen) {
-                        this.renderOpenContourBeingEdited(enabledElement, svgDrawingHelper, annotation);
+                });
+                renderStatus = true;
+            }
+            if (!this.configuration.calculateStats)
+                return;
+            annotations.forEach((annotation) => {
+                const activeAnnotationUID = this.commonData?.annotation.annotationUID;
+                if (annotation.annotationUID === activeAnnotationUID &&
+                    !this.commonData?.movingTextBox)
+                    return;
+                if (!this.commonData?.movingTextBox) {
+                    const { data } = annotation;
+                    if (!data.cachedStats[targetId] ||
+                        data.cachedStats[targetId].areaUnit === undefined) {
+                        data.cachedStats[targetId] = {
+                            Modality: null,
+                            area: null,
+                            max: null,
+                            mean: null,
+                            stdDev: null,
+                            areaUnit: null,
+                        };
+                        this._calculateCachedStats(annotation, viewport, renderingEngine, enabledElement);
                     }
-                    else {
-                        throw new Error(`Unknown ${this.getToolName()} annotation rendering state`);
+                    else if (annotation.invalidated) {
+                        this._throttledCalculateCachedStats(annotation, viewport, renderingEngine, enabledElement);
                     }
                 }
-                else {
-                    this.renderContour(enabledElement, svgDrawingHelper, annotation);
-                }
+                this._renderStats(annotation, viewport, enabledElement, svgDrawingHelper);
             });
-            return true;
+            return renderStatus;
+        };
+        this._calculateCachedStats = (annotation, viewport, renderingEngine, enabledElement) => {
+            const data = annotation.data;
+            const { cachedStats, polyline: points } = data;
+            const targetIds = Object.keys(cachedStats);
+            for (let i = 0; i < targetIds.length; i++) {
+                const targetId = targetIds[i];
+                const image = this.getTargetIdImage(targetId, renderingEngine);
+                if (!image) {
+                    continue;
+                }
+                const { imageData, metadata, hasPixelSpacing } = image;
+                const canvasCoordinates = points.map((p) => viewport.worldToCanvas(p));
+                const area = polyline.calculateAreaOfPoints(canvasCoordinates);
+                const worldPosIndex = csUtils.transformWorldToIndex(imageData, points[0]);
+                worldPosIndex[0] = Math.floor(worldPosIndex[0]);
+                worldPosIndex[1] = Math.floor(worldPosIndex[1]);
+                worldPosIndex[2] = Math.floor(worldPosIndex[2]);
+                let iMin = worldPosIndex[0];
+                let iMax = worldPosIndex[0];
+                let jMin = worldPosIndex[1];
+                let jMax = worldPosIndex[1];
+                let kMin = worldPosIndex[2];
+                let kMax = worldPosIndex[2];
+                for (let j = 1; j < points.length; j++) {
+                    const worldPosIndex = csUtils.transformWorldToIndex(imageData, points[j]);
+                    worldPosIndex[0] = Math.floor(worldPosIndex[0]);
+                    worldPosIndex[1] = Math.floor(worldPosIndex[1]);
+                    worldPosIndex[2] = Math.floor(worldPosIndex[2]);
+                    iMin = Math.min(iMin, worldPosIndex[0]);
+                    iMax = Math.max(iMax, worldPosIndex[0]);
+                    jMin = Math.min(jMin, worldPosIndex[1]);
+                    jMax = Math.max(jMax, worldPosIndex[1]);
+                    kMin = Math.min(kMin, worldPosIndex[2]);
+                    kMax = Math.max(kMax, worldPosIndex[2]);
+                }
+                const iDelta = 0.01 * (iMax - iMin);
+                const jDelta = 0.01 * (jMax - jMin);
+                const kDelta = 0.01 * (kMax - kMin);
+                iMin = Math.floor(iMin - iDelta);
+                iMax = Math.ceil(iMax + iDelta);
+                jMin = Math.floor(jMin - jDelta);
+                jMax = Math.ceil(jMax + jDelta);
+                kMin = Math.floor(kMin - kDelta);
+                kMax = Math.ceil(kMax + kDelta);
+                const boundsIJK = [
+                    [iMin, iMax],
+                    [jMin, jMax],
+                    [kMin, kMax],
+                ];
+                const worldPosEnd = imageData.indexToWorld([iMax, jMax, kMax]);
+                const canvasPosEnd = viewport.worldToCanvas(worldPosEnd);
+                let count = 0;
+                let sum = 0;
+                let sumSquares = 0;
+                let max = -Infinity;
+                const statCalculator = ({ value: newValue }) => {
+                    if (newValue > max) {
+                        max = newValue;
+                    }
+                    sum += newValue;
+                    sumSquares += newValue ** 2;
+                    count += 1;
+                };
+                let curRow = 0;
+                let intersections = [];
+                let intersectionCounter = 0;
+                pointInShapeCallback(imageData, (pointLPS, pointIJK) => {
+                    let result = true;
+                    const point = viewport.worldToCanvas(pointLPS);
+                    if (point[1] != curRow) {
+                        intersectionCounter = 0;
+                        curRow = point[1];
+                        intersections = getIntersectionCoordinatesWithPolyline(canvasCoordinates, point, [canvasPosEnd[0], point[1]]);
+                        intersections.sort((function (index) {
+                            return function (a, b) {
+                                return a[index] === b[index]
+                                    ? 0
+                                    : a[index] < b[index]
+                                        ? -1
+                                        : 1;
+                            };
+                        })(0));
+                    }
+                    if (intersections.length && point[0] > intersections[0][0]) {
+                        intersections.shift();
+                        intersectionCounter++;
+                    }
+                    if (intersectionCounter % 2 === 0) {
+                        result = false;
+                    }
+                    return result;
+                }, statCalculator, boundsIJK);
+                const mean = sum / count;
+                let stdDev = sumSquares / count - mean ** 2;
+                stdDev = Math.sqrt(stdDev);
+                cachedStats[targetId] = {
+                    Modality: metadata.Modality,
+                    area,
+                    mean,
+                    max,
+                    stdDev,
+                    areaUnit: hasPixelSpacing ? 'mm' : 'px',
+                };
+            }
+            annotation.invalidated = false;
+            return cachedStats;
+        };
+        this._renderStats = (annotation, viewport, enabledElement, svgDrawingHelper) => {
+            const data = annotation.data;
+            const targetId = this.getTargetId(viewport);
+            const isPreScaled = isViewportPreScaled(viewport, targetId);
+            const isSuvScaled = this.isSuvScaled(viewport, targetId, annotation.metadata.referencedImageId);
+            const textLines = this._getTextLines(data, targetId, isPreScaled, isSuvScaled);
+            if (!textLines || textLines.length === 0)
+                return;
+            const canvasCoordinates = data.polyline.map((p) => viewport.worldToCanvas(p));
+            if (!data.handles.textBox.hasMoved) {
+                const canvasTextBoxCoords = getTextBoxCoordsCanvas(canvasCoordinates);
+                data.handles.textBox.worldPosition =
+                    viewport.canvasToWorld(canvasTextBoxCoords);
+            }
+            const textBoxPosition = viewport.worldToCanvas(data.handles.textBox.worldPosition);
+            const styleSpecifier = {
+                toolGroupId: this.toolGroupId,
+                toolName: this.getToolName(),
+                viewportId: enabledElement.viewport.id,
+            };
+            const textBoxUID = '1';
+            const boundingBox = drawLinkedTextBox(svgDrawingHelper, annotation.annotationUID ?? '', textBoxUID, textLines, textBoxPosition, canvasCoordinates, {}, this.getLinkedTextBoxStyle(styleSpecifier, annotation));
+            const { x: left, y: top, width, height } = boundingBox;
+            data.handles.textBox.worldBoundingBox = {
+                topLeft: viewport.canvasToWorld([left, top]),
+                topRight: viewport.canvasToWorld([left + width, top]),
+                bottomLeft: viewport.canvasToWorld([left, top + height]),
+                bottomRight: viewport.canvasToWorld([left + width, top + height]),
+            };
+        };
+        this._getTextLines = (data, targetId, isPreScaled, isSuvScaled) => {
+            const cachedVolumeStats = data.cachedStats[targetId];
+            const { area, mean, stdDev, max, isEmptyArea, Modality, areaUnit } = cachedVolumeStats;
+            const textLines = [];
+            const unit = getModalityUnit(Modality, isPreScaled, isSuvScaled);
+            if (area) {
+                const areaLine = isEmptyArea
+                    ? `Area: Oblique not supported`
+                    : `Area: ${area.toFixed(2)} ${areaUnit}\xb2`;
+                textLines.push(areaLine);
+            }
+            if (mean) {
+                textLines.push(`Mean: ${mean.toFixed(2)} ${unit}`);
+            }
+            if (max) {
+                textLines.push(`Max: ${max.toFixed(2)} ${unit}`);
+            }
+            if (stdDev) {
+                textLines.push(`Std Dev: ${stdDev.toFixed(2)} ${unit}`);
+            }
+            return textLines;
         };
         registerDrawLoop(this);
         registerEditLoopCommon(this);
@@ -212,6 +408,7 @@ class PlanarFreehandROITool extends AnnotationTool {
         registerOpenContourEditLoop(this);
         registerOpenContourEndEditLoop(this);
         registerRenderMethods(this);
+        this._throttledCalculateCachedStats = throttle(this._calculateCachedStats, 100, { trailing: true });
     }
     filterInteractableAnnotationsForElement(element, annotations) {
         if (!annotations || !annotations.length) {

package/dist/esm/tools/annotation/PlanarFreehandROITool.js.map

@@ -1 +1 @@
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package/dist/esm/tools/annotation/planarFreehandROITool/closedContourEditLoop.js

@@ -28,6 +28,7 @@ function activateClosedContourEdit(evt, annotation, viewportIdsToRender) {
         spacing,
         xDir,
         yDir,
+        movingTextBox: false,
     };
     state.isInteractingWithTool = true;
     element.addEventListener(Events.MOUSE_UP, this.mouseUpClosedContourEditCallback);

package/dist/esm/tools/annotation/planarFreehandROITool/closedContourEditLoop.js.map

@@ -1 +1 @@
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package/dist/esm/tools/annotation/planarFreehandROITool/drawLoop.js

@@ -27,6 +27,7 @@ function activateDraw(evt, annotation, viewportIdsToRender) {
         spacing,
         xDir,
         yDir,
+        movingTextBox: false,
     };
     state.isInteractingWithTool = true;
     element.addEventListener(Events.MOUSE_UP, this.mouseUpDrawCallback);
@@ -54,7 +55,7 @@ function mouseDragDrawCallback(evt) {
     const canvasPos = currentPoints.canvas;
     const enabledElement = getEnabledElement(element);
     const { renderingEngine, viewport } = enabledElement;
-    const { viewportIdsToRender, xDir, yDir, spacing } = this.commonData;
+    const { annotation, viewportIdsToRender, xDir, yDir, spacing, movingTextBox, } = this.commonData;
     const { polylineIndex, canvasPoints } = this.drawData;
     const lastCanvasPoint = canvasPoints[canvasPoints.length - 1];
     const lastWorldPoint = viewport.canvasToWorld(lastCanvasPoint);
@@ -65,13 +66,26 @@ function mouseDragDrawCallback(evt) {
     if (xDist <= spacing[0] && yDist <= spacing[1]) {
         return;
     }
-    const crossingIndex = this.findCrossingIndexDuringCreate(evt);
-    if (crossingIndex !== undefined) {
-        this.applyCreateOnCross(evt, crossingIndex);
+    if (movingTextBox) {
+        this.isDrawing = false;
+        const { deltaPoints } = eventDetail;
+        const worldPosDelta = deltaPoints.world;
+        const { textBox } = annotation.data.handles;
+        const { worldPosition } = textBox;
+        worldPosition[0] += worldPosDelta[0];
+        worldPosition[1] += worldPosDelta[1];
+        worldPosition[2] += worldPosDelta[2];
+        textBox.hasMoved = true;
     }
     else {
-        const numPointsAdded = addCanvasPointsToArray(element, canvasPoints, canvasPos, this.commonData);
-        this.drawData.polylineIndex = polylineIndex + numPointsAdded;
+        const crossingIndex = this.findCrossingIndexDuringCreate(evt);
+        if (crossingIndex !== undefined) {
+            this.applyCreateOnCross(evt, crossingIndex);
+        }
+        else {
+            const numPointsAdded = addCanvasPointsToArray(element, canvasPoints, canvasPos, this.commonData);
+            this.drawData.polylineIndex = polylineIndex + numPointsAdded;
+        }
     }
     triggerAnnotationRenderForViewportIds(renderingEngine, viewportIdsToRender);
 }

package/dist/esm/tools/annotation/planarFreehandROITool/drawLoop.js.map

@@ -1 +1 @@
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package/dist/esm/tools/annotation/planarFreehandROITool/openContourEditLoop.js

@@ -29,6 +29,7 @@ function activateOpenContourEdit(evt, annotation, viewportIdsToRender) {
         spacing,
         xDir,
         yDir,
+        movingTextBox: false,
     };
     state.isInteractingWithTool = true;
     element.addEventListener(Events.MOUSE_UP, this.mouseUpOpenContourEditCallback);
@@ -108,7 +109,7 @@ function openContourEditOverwriteEnd(evt) {
     this.editData = undefined;
     this.commonData = undefined;
     this.deactivateOpenContourEdit(element);
-    this.activateOpenContourEndEdit(evt, annotation, viewportIdsToRender);
+    this.activateOpenContourEndEdit(evt, annotation, viewportIdsToRender, null);
 }
 function checkIfShouldOverwriteAnEnd(evt) {
     const eventDetail = evt.detail;

package/dist/esm/tools/annotation/planarFreehandROITool/openContourEditLoop.js.map

@@ -1 +1 @@
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