@cornerstonejs/tools 0.53.1 → 0.54.1

package/dist/esm/utilities/segmentation/index.js

@@ -8,5 +8,6 @@ import { triggerSegmentationRender } from './triggerSegmentationRender';
 import floodFill from './floodFill';
 import { getBrushSizeForToolGroup, setBrushSizeForToolGroup, } from './brushSizeForToolGroup';
 import { getBrushThresholdForToolGroup, setBrushThresholdForToolGroup, } from './brushThresholdForToolGroup';
-export { thresholdVolumeByRange, createMergedLabelmapForIndex, isValidRepresentationConfig, getDefaultRepresentationConfig, createLabelmapVolumeForViewport, rectangleROIThresholdVolumeByRange, triggerSegmentationRender, floodFill, getBrushSizeForToolGroup, setBrushSizeForToolGroup, getBrushThresholdForToolGroup, setBrushThresholdForToolGroup, };
+import thresholdSegmentationByRange from './thresholdSegmentationByRange';
+export { thresholdVolumeByRange, createMergedLabelmapForIndex, isValidRepresentationConfig, getDefaultRepresentationConfig, createLabelmapVolumeForViewport, rectangleROIThresholdVolumeByRange, triggerSegmentationRender, floodFill, getBrushSizeForToolGroup, setBrushSizeForToolGroup, getBrushThresholdForToolGroup, setBrushThresholdForToolGroup, thresholdSegmentationByRange, };
 //# sourceMappingURL=index.js.map

package/dist/esm/utilities/segmentation/index.js.map

@@ -1 +1 @@
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package/dist/esm/utilities/segmentation/rectangleROIThresholdVolumeByRange.d.ts

@@ -1,9 +1,5 @@
 import type { Types } from '@cornerstonejs/core';
-export declare type ThresholdInformation = {
-    volume: Types.IImageVolume;
-    lower: number;
-    upper: number;
-};
+import { ThresholdInformation } from './utilities';
 export declare type ThresholdOptions = {
     numSlicesToProject?: number;
     overwrite: boolean;

package/dist/esm/utilities/segmentation/rectangleROIThresholdVolumeByRange.js.map

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package/dist/esm/utilities/segmentation/thresholdSegmentationByRange.d.ts

@@ -0,0 +1,4 @@
+import { Types } from '@cornerstonejs/core';
+import { ThresholdInformation } from './utilities';
+declare function thresholdSegmentationByRange(segmentationVolume: Types.IImageVolume, segmentationIndex: number, thresholdVolumeInformation: ThresholdInformation[], overlapType: number): Types.IImageVolume;
+export default thresholdSegmentationByRange;

package/dist/esm/utilities/segmentation/thresholdSegmentationByRange.js

@@ -0,0 +1,52 @@
+import { pointInShapeCallback } from '../../utilities';
+import { triggerSegmentationDataModified } from '../../stateManagement/segmentation/triggerSegmentationEvents';
+import { getVoxelOverlap, processVolumes, } from './utilities';
+function thresholdSegmentationByRange(segmentationVolume, segmentationIndex, thresholdVolumeInformation, overlapType) {
+    const scalarData = segmentationVolume.getScalarData();
+    const { baseVolumeIdx, volumeInfoList } = processVolumes(segmentationVolume, thresholdVolumeInformation);
+    volumeInfoList.forEach((volumeInfo) => {
+        const { volumeSize } = volumeInfo;
+        if (volumeSize === scalarData.length) {
+            _handleSameSizeVolume(scalarData, segmentationIndex, volumeInfo);
+        }
+        else {
+            _handleDifferentSizeVolume(scalarData, segmentationIndex, volumeInfo, volumeInfoList, baseVolumeIdx, overlapType);
+        }
+    });
+    triggerSegmentationDataModified(segmentationVolume.volumeId);
+    return segmentationVolume;
+}
+function _handleDifferentSizeVolume(scalarData, segmentationIndex, volumeInfo, volumeInfoList, baseVolumeIdx, overlapType) {
+    const { imageData, lower, upper, dimensions } = volumeInfo;
+    let total, overlaps, range;
+    for (let i = 0; i < scalarData.length; i++) {
+        if (scalarData[i] === segmentationIndex) {
+            const overlapBounds = getVoxelOverlap(imageData, dimensions, volumeInfoList[baseVolumeIdx].spacing, volumeInfoList[baseVolumeIdx].imageData.getPoint(i));
+            const callbackOverlap = ({ value }) => {
+                total = total + 1;
+                if (value >= range.lower && value <= range.upper) {
+                    overlaps = overlaps + 1;
+                }
+            };
+            total = 0;
+            overlaps = 0;
+            range = { lower, upper };
+            let overlapTest = false;
+            pointInShapeCallback(imageData, () => true, callbackOverlap, overlapBounds);
+            overlapTest = overlapType === 0 ? overlaps > 0 : overlaps === total;
+            scalarData[i] = overlapTest ? segmentationIndex : 0;
+        }
+    }
+    return { total, range, overlaps };
+}
+function _handleSameSizeVolume(scalarData, segmentationIndex, volumeInfo) {
+    const { referenceValues, lower, upper } = volumeInfo;
+    for (let i = 0; i < scalarData.length; i++) {
+        if (scalarData[i] === segmentationIndex) {
+            const value = referenceValues[i];
+            scalarData[i] = value >= lower && value <= upper ? segmentationIndex : 0;
+        }
+    }
+}
+export default thresholdSegmentationByRange;
+//# sourceMappingURL=thresholdSegmentationByRange.js.map

package/dist/esm/utilities/segmentation/thresholdSegmentationByRange.js.map

@@ -0,0 +1 @@
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package/dist/esm/utilities/segmentation/thresholdVolumeByRange.d.ts

@@ -1,14 +1,10 @@
 import { Types } from '@cornerstonejs/core';
 import { BoundsIJK } from '../../types';
+import { ThresholdInformation } from './utilities';
 export declare type ThresholdRangeOptions = {
     overwrite: boolean;
     boundsIJK: BoundsIJK;
     overlapType?: number;
 };
-export declare type ThresholdInformation = {
-    volume: Types.IImageVolume;
-    lower: number;
-    upper: number;
-};
 declare function thresholdVolumeByRange(segmentationVolume: Types.IImageVolume, thresholdVolumeInformation: ThresholdInformation[], options: ThresholdRangeOptions): Types.IImageVolume;
 export default thresholdVolumeByRange;

package/dist/esm/utilities/segmentation/thresholdVolumeByRange.js

@@ -1,12 +1,8 @@
-import { utilities as csUtils } from '@cornerstonejs/core';
 import { pointInShapeCallback } from '../../utilities';
 import { triggerSegmentationDataModified } from '../../stateManagement/segmentation/triggerSegmentationEvents';
-import getBoundingBoxAroundShape from '../boundingBox/getBoundingBoxAroundShape';
-const equalsCheck = (a, b) => {
-    return JSON.stringify(a) === JSON.stringify(b);
-};
+import { getVoxelOverlap, processVolumes, } from './utilities';
 function thresholdVolumeByRange(segmentationVolume, thresholdVolumeInformation, options) {
-    const { spacing: segmentationSpacing, imageData: segmentationImageData } = segmentationVolume;
+    const { imageData: segmentationImageData } = segmentationVolume;
     const scalarData = segmentationVolume.getScalarData();
     const { overwrite, boundsIJK } = options;
     const overlapType = options?.overlapType || 0;
@@ -15,28 +11,7 @@ function thresholdVolumeByRange(segmentationVolume, thresholdVolumeInformation,
             scalarData[i] = 0;
         }
     }
-    const volumeInfoList = [];
-    let baseVolumeIdx = 0;
-    for (let i = 0; i < thresholdVolumeInformation.length; i++) {
-        const { imageData, spacing, dimensions } = thresholdVolumeInformation[i].volume;
-        const volumeSize = thresholdVolumeInformation[i].volume.getScalarData().length;
-        if (volumeSize === scalarData.length &&
-            equalsCheck(spacing, segmentationSpacing)) {
-            baseVolumeIdx = i;
-        }
-        const referenceValues = imageData.getPointData().getScalars().getData();
-        const lower = thresholdVolumeInformation[i].lower;
-        const upper = thresholdVolumeInformation[i].upper;
-        volumeInfoList.push({
-            imageData,
-            referenceValues,
-            lower,
-            upper,
-            spacing,
-            dimensions,
-            volumeSize,
-        });
-    }
+    const { baseVolumeIdx, volumeInfoList } = processVolumes(segmentationVolume, thresholdVolumeInformation);
     let overlaps, total, range;
     const testOverlapRange = (volumeInfo, voxelSpacing, voxelCenter) => {
         const callbackOverlap = ({ value }) => {
@@ -71,23 +46,6 @@ function thresholdVolumeByRange(segmentationVolume, thresholdVolumeInformation,
             return true;
         }
     };
-    const getVoxelOverlap = (imageData, dimensions, voxelSpacing, voxelCenter) => {
-        const voxelCornersWorld = [];
-        for (let i = 0; i < 2; i++) {
-            for (let j = 0; j < 2; j++) {
-                for (let k = 0; k < 2; k++) {
-                    const point = voxelCenter;
-                    point[0] = point[0] + ((i * 2 - 1) * voxelSpacing[0]) / 2;
-                    point[1] = point[1] + ((j * 2 - 1) * voxelSpacing[1]) / 2;
-                    point[2] = point[2] + ((k * 2 - 1) * voxelSpacing[2]) / 2;
-                    voxelCornersWorld.push(point);
-                }
-            }
-        }
-        const voxelCornersIJK = voxelCornersWorld.map((world) => csUtils.transformWorldToIndex(imageData, world));
-        const overlapBounds = getBoundingBoxAroundShape(voxelCornersIJK, dimensions);
-        return overlapBounds;
-    };
     const callback = ({ index, pointIJK, pointLPS }) => {
         let insert = volumeInfoList.length > 0;
         for (let i = 0; i < volumeInfoList.length; i++) {

package/dist/esm/utilities/segmentation/thresholdVolumeByRange.js.map

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package/dist/esm/utilities/segmentation/utilities.d.ts

@@ -1,2 +1,13 @@
+import { Types } from '@cornerstonejs/core';
 import BrushTool from '../../tools/segmentation/BrushTool';
+export declare type ThresholdInformation = {
+    volume: Types.IImageVolume;
+    lower: number;
+    upper: number;
+};
 export default function getBrushToolInstances(toolGroupId: any): BrushTool[];
+export declare function getVoxelOverlap(imageData: any, dimensions: any, voxelSpacing: any, voxelCenter: any): [Types.Point2, Types.Point2, Types.Point2];
+export declare function processVolumes(segmentationVolume: Types.IImageVolume, thresholdVolumeInformation: ThresholdInformation[]): {
+    volumeInfoList: any[];
+    baseVolumeIdx: number;
+};

package/dist/esm/utilities/segmentation/utilities.js

@@ -1,5 +1,7 @@
+import { utilities as csUtils } from '@cornerstonejs/core';
 import { getToolGroup } from '../../store/ToolGroupManager';
 import BrushTool from '../../tools/segmentation/BrushTool';
+import getBoundingBoxAroundShape from '../boundingBox/getBoundingBoxAroundShape';
 export default function getBrushToolInstances(toolGroupId) {
     const toolGroup = getToolGroup(toolGroupId);
     if (toolGroup === undefined) {
@@ -12,4 +14,54 @@ export default function getBrushToolInstances(toolGroupId) {
     const brushBasedToolInstances = Object.values(toolInstances).filter((toolInstance) => toolInstance instanceof BrushTool);
     return brushBasedToolInstances;
 }
+const equalsCheck = (a, b) => {
+    return JSON.stringify(a) === JSON.stringify(b);
+};
+export function getVoxelOverlap(imageData, dimensions, voxelSpacing, voxelCenter) {
+    const voxelCornersWorld = [];
+    for (let i = 0; i < 2; i++) {
+        for (let j = 0; j < 2; j++) {
+            for (let k = 0; k < 2; k++) {
+                const point = voxelCenter;
+                point[0] = point[0] + ((i * 2 - 1) * voxelSpacing[0]) / 2;
+                point[1] = point[1] + ((j * 2 - 1) * voxelSpacing[1]) / 2;
+                point[2] = point[2] + ((k * 2 - 1) * voxelSpacing[2]) / 2;
+                voxelCornersWorld.push(point);
+            }
+        }
+    }
+    const voxelCornersIJK = voxelCornersWorld.map((world) => csUtils.transformWorldToIndex(imageData, world));
+    const overlapBounds = getBoundingBoxAroundShape(voxelCornersIJK, dimensions);
+    return overlapBounds;
+}
+export function processVolumes(segmentationVolume, thresholdVolumeInformation) {
+    const { spacing: segmentationSpacing, imageData: segmentationImageData } = segmentationVolume;
+    const scalarData = segmentationVolume.getScalarData();
+    const volumeInfoList = [];
+    let baseVolumeIdx = 0;
+    for (let i = 0; i < thresholdVolumeInformation.length; i++) {
+        const { imageData, spacing, dimensions } = thresholdVolumeInformation[i].volume;
+        const volumeSize = thresholdVolumeInformation[i].volume.getScalarData().length;
+        if (volumeSize === scalarData.length &&
+            equalsCheck(spacing, segmentationSpacing)) {
+            baseVolumeIdx = i;
+        }
+        const referenceValues = imageData.getPointData().getScalars().getData();
+        const lower = thresholdVolumeInformation[i].lower;
+        const upper = thresholdVolumeInformation[i].upper;
+        volumeInfoList.push({
+            imageData,
+            referenceValues,
+            lower,
+            upper,
+            spacing,
+            dimensions,
+            volumeSize,
+        });
+    }
+    return {
+        volumeInfoList,
+        baseVolumeIdx,
+    };
+}
 //# sourceMappingURL=utilities.js.map

package/dist/esm/utilities/segmentation/utilities.js.map

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