@cornerstonejs/tools 0.49.0 → 0.50.0

package/dist/cjs/utilities/dynamicVolume/getDataInTime.d.ts

@@ -0,0 +1,7 @@
+import { Types } from '@cornerstonejs/core';
+declare function getDataInTime(dynamicVolume: Types.IDynamicImageVolume, options: {
+    frameNumbers?: any;
+    maskVolumeId?: any;
+    imageCoordinate?: any;
+}): number[] | number[][];
+export default getDataInTime;

package/dist/cjs/utilities/dynamicVolume/getDataInTime.js

@@ -0,0 +1,64 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+const core_1 = require("@cornerstonejs/core");
+function getDataInTime(dynamicVolume, options) {
+    let dataInTime;
+    const frames = options.frameNumbers || [
+        ...Array(dynamicVolume.numTimePoints).keys(),
+    ];
+    if (!options.maskVolumeId && !options.imageCoordinate) {
+        throw new Error('No ROI provided');
+    }
+    if (options.maskVolumeId && options.imageCoordinate) {
+        throw new Error('Please provide only one ROI');
+    }
+    if (options.maskVolumeId) {
+        const segmentationVolume = core_1.cache.getVolume(options.maskVolumeId);
+        const indexArray = segmentationVolume
+            .getScalarData()
+            .map((_, i) => i)
+            .filter((i) => segmentationVolume.getScalarData()[i] !== 0);
+        const dataInTime = _getTimePointDataMask(frames, indexArray, dynamicVolume);
+        return dataInTime;
+    }
+    if (options.imageCoordinate) {
+        const dataInTime = _getTimePointDataCoordinate(frames, options.imageCoordinate, dynamicVolume);
+        return dataInTime;
+    }
+    return dataInTime;
+}
+function _getTimePointDataCoordinate(frames, coordinate, volume) {
+    const { dimensions, imageData } = volume;
+    const index = imageData.worldToIndex(coordinate);
+    index[0] = Math.floor(index[0]);
+    index[1] = Math.floor(index[1]);
+    index[2] = Math.floor(index[2]);
+    if (!core_1.utilities.indexWithinDimensions(index, dimensions)) {
+        throw new Error('outside bounds');
+    }
+    const yMultiple = dimensions[0];
+    const zMultiple = dimensions[0] * dimensions[1];
+    const allScalarData = volume.getScalarDataArrays();
+    const value = [];
+    for (let i = frames[0]; i < frames[0] + frames.length; i++) {
+        const activeScalarData = allScalarData[i];
+        const scalarIndex = index[2] * zMultiple + index[1] * yMultiple + index[0];
+        value.push(activeScalarData[scalarIndex]);
+    }
+    return value;
+}
+function _getTimePointDataMask(frames, indexArray, volume) {
+    const allScalarData = volume.getScalarDataArrays();
+    const value = [];
+    for (let i = 0; i < indexArray.length; i++) {
+        const indexValues = [];
+        for (let j = frames[0]; j < frames[0] + frames.length; j++) {
+            const activeScalarData = allScalarData[j];
+            indexValues.push(activeScalarData[indexArray[i]]);
+        }
+        value.push(indexValues);
+    }
+    return value;
+}
+exports.default = getDataInTime;
+//# sourceMappingURL=getDataInTime.js.map

package/dist/cjs/utilities/dynamicVolume/getDataInTime.js.map

@@ -0,0 +1 @@
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package/dist/cjs/utilities/dynamicVolume/index.d.ts

@@ -0,0 +1,2 @@
+import getDataInTime from './getDataInTime';
+export { getDataInTime };

package/dist/cjs/utilities/dynamicVolume/index.js

@@ -0,0 +1,9 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.getDataInTime = void 0;
+const getDataInTime_1 = __importDefault(require("./getDataInTime"));
+exports.getDataInTime = getDataInTime_1.default;
+//# sourceMappingURL=index.js.map

package/dist/cjs/utilities/dynamicVolume/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../../src/utilities/dynamicVolume/index.ts"],"names":[],"mappings":";;;;;;AAAA,oEAA4C;AACnC,wBADF,uBAAa,CACE"}

package/dist/cjs/utilities/index.d.ts

@@ -24,5 +24,6 @@ import * as rectangleROITool from './rectangleROITool';
 import * as stackPrefetch from './stackPrefetch';
 import * as viewport from './viewport';
 import * as touch from './touch';
+import * as dynamicVolume from './dynamicVolume';
 import { triggerEvent } from '@cornerstonejs/core';
-export { math, planar, viewportFilters, drawing, debounce, deepMerge, throttle, orientation, isObject, touch, triggerEvent, calibrateImageSpacing, segmentation, triggerAnnotationRenderForViewportIds, triggerAnnotationRender, pointInShapeCallback, pointInSurroundingSphereCallback, getAnnotationNearPoint, getAnnotationNearPointOnEnabledElement, jumpToSlice, viewport, cine, clip, boundingBox, rectangleROITool, planarFreehandROITool, stackPrefetch, scroll, };
+export { math, planar, viewportFilters, drawing, debounce, deepMerge, dynamicVolume, throttle, orientation, isObject, touch, triggerEvent, calibrateImageSpacing, segmentation, triggerAnnotationRenderForViewportIds, triggerAnnotationRender, pointInShapeCallback, pointInSurroundingSphereCallback, getAnnotationNearPoint, getAnnotationNearPointOnEnabledElement, jumpToSlice, viewport, cine, clip, boundingBox, rectangleROITool, planarFreehandROITool, stackPrefetch, scroll, };

package/dist/cjs/utilities/index.js

@@ -26,7 +26,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.scroll = exports.stackPrefetch = exports.planarFreehandROITool = exports.rectangleROITool = exports.boundingBox = exports.clip = exports.cine = exports.viewport = exports.jumpToSlice = exports.getAnnotationNearPointOnEnabledElement = exports.getAnnotationNearPoint = exports.pointInSurroundingSphereCallback = exports.pointInShapeCallback = exports.triggerAnnotationRender = exports.triggerAnnotationRenderForViewportIds = exports.segmentation = exports.calibrateImageSpacing = exports.triggerEvent = exports.touch = exports.isObject = exports.orientation = exports.throttle = exports.deepMerge = exports.debounce = exports.drawing = exports.viewportFilters = exports.planar = exports.math = void 0;
+exports.scroll = exports.stackPrefetch = exports.planarFreehandROITool = exports.rectangleROITool = exports.boundingBox = exports.clip = exports.cine = exports.viewport = exports.jumpToSlice = exports.getAnnotationNearPointOnEnabledElement = exports.getAnnotationNearPoint = exports.pointInSurroundingSphereCallback = exports.pointInShapeCallback = exports.triggerAnnotationRender = exports.triggerAnnotationRenderForViewportIds = exports.segmentation = exports.calibrateImageSpacing = exports.triggerEvent = exports.touch = exports.isObject = exports.orientation = exports.throttle = exports.dynamicVolume = exports.deepMerge = exports.debounce = exports.drawing = exports.viewportFilters = exports.planar = exports.math = void 0;
 const getAnnotationNearPoint_1 = require("./getAnnotationNearPoint");
 Object.defineProperty(exports, "getAnnotationNearPoint", { enumerable: true, get: function () { return getAnnotationNearPoint_1.getAnnotationNearPoint; } });
 Object.defineProperty(exports, "getAnnotationNearPointOnEnabledElement", { enumerable: true, get: function () { return getAnnotationNearPoint_1.getAnnotationNearPointOnEnabledElement; } });
@@ -80,6 +80,8 @@ const viewport = __importStar(require("./viewport"));
 exports.viewport = viewport;
 const touch = __importStar(require("./touch"));
 exports.touch = touch;
+const dynamicVolume = __importStar(require("./dynamicVolume"));
+exports.dynamicVolume = dynamicVolume;
 const core_1 = require("@cornerstonejs/core");
 Object.defineProperty(exports, "triggerEvent", { enumerable: true, get: function () { return core_1.triggerEvent; } });
 //# sourceMappingURL=index.js.map

package/dist/cjs/utilities/index.js.map

@@ -1 +1 @@
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package/dist/esm/utilities/dynamicVolume/getDataInTime.d.ts

@@ -0,0 +1,7 @@
+import { Types } from '@cornerstonejs/core';
+declare function getDataInTime(dynamicVolume: Types.IDynamicImageVolume, options: {
+    frameNumbers?: any;
+    maskVolumeId?: any;
+    imageCoordinate?: any;
+}): number[] | number[][];
+export default getDataInTime;

package/dist/esm/utilities/dynamicVolume/getDataInTime.js

@@ -0,0 +1,62 @@
+import { utilities, cache } from '@cornerstonejs/core';
+function getDataInTime(dynamicVolume, options) {
+    let dataInTime;
+    const frames = options.frameNumbers || [
+        ...Array(dynamicVolume.numTimePoints).keys(),
+    ];
+    if (!options.maskVolumeId && !options.imageCoordinate) {
+        throw new Error('No ROI provided');
+    }
+    if (options.maskVolumeId && options.imageCoordinate) {
+        throw new Error('Please provide only one ROI');
+    }
+    if (options.maskVolumeId) {
+        const segmentationVolume = cache.getVolume(options.maskVolumeId);
+        const indexArray = segmentationVolume
+            .getScalarData()
+            .map((_, i) => i)
+            .filter((i) => segmentationVolume.getScalarData()[i] !== 0);
+        const dataInTime = _getTimePointDataMask(frames, indexArray, dynamicVolume);
+        return dataInTime;
+    }
+    if (options.imageCoordinate) {
+        const dataInTime = _getTimePointDataCoordinate(frames, options.imageCoordinate, dynamicVolume);
+        return dataInTime;
+    }
+    return dataInTime;
+}
+function _getTimePointDataCoordinate(frames, coordinate, volume) {
+    const { dimensions, imageData } = volume;
+    const index = imageData.worldToIndex(coordinate);
+    index[0] = Math.floor(index[0]);
+    index[1] = Math.floor(index[1]);
+    index[2] = Math.floor(index[2]);
+    if (!utilities.indexWithinDimensions(index, dimensions)) {
+        throw new Error('outside bounds');
+    }
+    const yMultiple = dimensions[0];
+    const zMultiple = dimensions[0] * dimensions[1];
+    const allScalarData = volume.getScalarDataArrays();
+    const value = [];
+    for (let i = frames[0]; i < frames[0] + frames.length; i++) {
+        const activeScalarData = allScalarData[i];
+        const scalarIndex = index[2] * zMultiple + index[1] * yMultiple + index[0];
+        value.push(activeScalarData[scalarIndex]);
+    }
+    return value;
+}
+function _getTimePointDataMask(frames, indexArray, volume) {
+    const allScalarData = volume.getScalarDataArrays();
+    const value = [];
+    for (let i = 0; i < indexArray.length; i++) {
+        const indexValues = [];
+        for (let j = frames[0]; j < frames[0] + frames.length; j++) {
+            const activeScalarData = allScalarData[j];
+            indexValues.push(activeScalarData[indexArray[i]]);
+        }
+        value.push(indexValues);
+    }
+    return value;
+}
+export default getDataInTime;
+//# sourceMappingURL=getDataInTime.js.map

package/dist/esm/utilities/dynamicVolume/getDataInTime.js.map

@@ -0,0 +1 @@
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package/dist/esm/utilities/dynamicVolume/index.d.ts

@@ -0,0 +1,2 @@
+import getDataInTime from './getDataInTime';
+export { getDataInTime };

package/dist/esm/utilities/dynamicVolume/index.js

@@ -0,0 +1,3 @@
+import getDataInTime from './getDataInTime';
+export { getDataInTime };
+//# sourceMappingURL=index.js.map

package/dist/esm/utilities/dynamicVolume/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../../src/utilities/dynamicVolume/index.ts"],"names":[],"mappings":"AAAA,OAAO,aAAa,MAAM,iBAAiB,CAAC;AAC5C,OAAO,EAAE,aAAa,EAAE,CAAC"}

package/dist/esm/utilities/index.d.ts

@@ -24,5 +24,6 @@ import * as rectangleROITool from './rectangleROITool';
 import * as stackPrefetch from './stackPrefetch';
 import * as viewport from './viewport';
 import * as touch from './touch';
+import * as dynamicVolume from './dynamicVolume';
 import { triggerEvent } from '@cornerstonejs/core';
-export { math, planar, viewportFilters, drawing, debounce, deepMerge, throttle, orientation, isObject, touch, triggerEvent, calibrateImageSpacing, segmentation, triggerAnnotationRenderForViewportIds, triggerAnnotationRender, pointInShapeCallback, pointInSurroundingSphereCallback, getAnnotationNearPoint, getAnnotationNearPointOnEnabledElement, jumpToSlice, viewport, cine, clip, boundingBox, rectangleROITool, planarFreehandROITool, stackPrefetch, scroll, };
+export { math, planar, viewportFilters, drawing, debounce, deepMerge, dynamicVolume, throttle, orientation, isObject, touch, triggerEvent, calibrateImageSpacing, segmentation, triggerAnnotationRenderForViewportIds, triggerAnnotationRender, pointInShapeCallback, pointInSurroundingSphereCallback, getAnnotationNearPoint, getAnnotationNearPointOnEnabledElement, jumpToSlice, viewport, cine, clip, boundingBox, rectangleROITool, planarFreehandROITool, stackPrefetch, scroll, };

package/dist/esm/utilities/index.js

@@ -24,6 +24,7 @@ import * as rectangleROITool from './rectangleROITool';
 import * as stackPrefetch from './stackPrefetch';
 import * as viewport from './viewport';
 import * as touch from './touch';
+import * as dynamicVolume from './dynamicVolume';
 import { triggerEvent } from '@cornerstonejs/core';
-export { math, planar, viewportFilters, drawing, debounce, deepMerge, throttle, orientation, isObject, touch, triggerEvent, calibrateImageSpacing, segmentation, triggerAnnotationRenderForViewportIds, triggerAnnotationRender, pointInShapeCallback, pointInSurroundingSphereCallback, getAnnotationNearPoint, getAnnotationNearPointOnEnabledElement, jumpToSlice, viewport, cine, clip, boundingBox, rectangleROITool, planarFreehandROITool, stackPrefetch, scroll, };
+export { math, planar, viewportFilters, drawing, debounce, deepMerge, dynamicVolume, throttle, orientation, isObject, touch, triggerEvent, calibrateImageSpacing, segmentation, triggerAnnotationRenderForViewportIds, triggerAnnotationRender, pointInShapeCallback, pointInSurroundingSphereCallback, getAnnotationNearPoint, getAnnotationNearPointOnEnabledElement, jumpToSlice, viewport, cine, clip, boundingBox, rectangleROITool, planarFreehandROITool, stackPrefetch, scroll, };
 //# sourceMappingURL=index.js.map

package/dist/esm/utilities/index.js.map

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